Query 036287
Match_columns 488
No_of_seqs 691 out of 3430
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 11:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-109 2E-114 867.8 56.2 486 2-488 142-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2E-103 4E-108 839.1 54.7 481 2-486 307-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 2.7E-59 5.8E-64 499.7 33.6 454 2-463 105-653 (857)
4 PLN03081 pentatricopeptide (PP 100.0 4E-58 8.6E-63 479.7 36.8 462 2-481 106-581 (697)
5 PLN03218 maturation of RBCL 1; 100.0 9E-57 2E-61 473.0 39.8 444 16-467 435-912 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 6.8E-54 1.5E-58 451.3 40.6 419 2-435 456-916 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 6.7E-33 1.5E-37 215.8 7.8 106 355-478 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.3E-22 4.9E-27 218.5 39.3 341 2-350 518-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 4.5E-22 9.9E-27 216.2 40.5 339 2-348 484-832 (899)
10 PRK11788 tetratricopeptide rep 99.9 7.3E-21 1.6E-25 186.6 32.0 294 57-356 42-355 (389)
11 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.3E-25 185.5 29.8 286 24-313 41-346 (389)
12 PRK15174 Vi polysaccharide exp 99.8 7E-18 1.5E-22 174.2 35.8 319 23-348 47-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 9.3E-18 2E-22 173.6 36.7 340 3-348 147-571 (615)
14 KOG4626 O-linked N-acetylgluco 99.8 1E-18 2.2E-23 165.4 23.6 323 18-348 116-485 (966)
15 PRK15174 Vi polysaccharide exp 99.8 5.1E-17 1.1E-21 167.8 36.3 328 2-348 61-403 (656)
16 KOG4626 O-linked N-acetylgluco 99.8 1.5E-17 3.3E-22 157.6 26.0 299 31-337 197-508 (966)
17 PRK11447 cellulose synthase su 99.8 1.9E-16 4.2E-21 174.4 38.6 184 158-349 468-701 (1157)
18 PRK11447 cellulose synthase su 99.8 8E-16 1.7E-20 169.5 39.7 339 3-352 371-745 (1157)
19 PRK10049 pgaA outer membrane p 99.8 1.8E-15 3.9E-20 159.6 38.9 342 4-348 36-456 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-15 3.5E-20 157.0 37.0 324 21-348 130-537 (615)
21 PRK10049 pgaA outer membrane p 99.8 1.7E-14 3.8E-19 152.1 39.3 329 17-349 14-423 (765)
22 PRK14574 hmsH outer membrane p 99.7 2.4E-13 5.2E-18 141.3 39.4 165 3-173 54-225 (822)
23 PRK09782 bacteriophage N4 rece 99.7 2.9E-13 6.4E-18 143.5 37.1 324 17-350 375-742 (987)
24 PRK09782 bacteriophage N4 rece 99.7 6.6E-13 1.4E-17 140.8 38.7 227 115-349 476-707 (987)
25 PRK14574 hmsH outer membrane p 99.6 2.4E-12 5.1E-17 134.0 37.6 323 23-348 39-479 (822)
26 KOG2076 RNA polymerase III tra 99.6 8E-13 1.7E-17 131.4 31.3 322 23-346 144-510 (895)
27 PF13429 TPR_15: Tetratricopep 99.6 8.5E-16 1.8E-20 143.2 9.8 256 86-346 13-275 (280)
28 PRK10747 putative protoheme IX 99.6 4.9E-12 1.1E-16 123.5 29.8 276 62-347 96-389 (398)
29 TIGR00540 hemY_coli hemY prote 99.6 2E-11 4.4E-16 119.7 32.4 78 267-345 313-396 (409)
30 KOG4422 Uncharacterized conser 99.5 2.2E-11 4.8E-16 111.5 29.3 233 72-308 198-456 (625)
31 PRK10747 putative protoheme IX 99.5 2.1E-11 4.5E-16 119.1 31.6 278 31-315 97-391 (398)
32 KOG2003 TPR repeat-containing 99.5 2.4E-11 5.2E-16 112.0 29.3 203 128-334 502-709 (840)
33 KOG1915 Cell cycle control pro 99.5 4.1E-11 8.9E-16 111.1 30.7 351 2-358 92-510 (677)
34 KOG1155 Anaphase-promoting com 99.5 4.8E-11 1E-15 110.5 30.8 327 13-347 159-494 (559)
35 KOG1126 DNA-binding cell divis 99.5 5.1E-12 1.1E-16 122.1 23.4 274 65-348 334-620 (638)
36 KOG1126 DNA-binding cell divis 99.5 2.7E-12 5.9E-17 123.9 20.9 244 95-347 333-585 (638)
37 TIGR00540 hemY_coli hemY prote 99.5 7.7E-11 1.7E-15 115.7 30.8 281 30-313 96-398 (409)
38 PF13429 TPR_15: Tetratricopep 99.5 1.7E-13 3.7E-18 127.7 11.3 249 23-277 13-272 (280)
39 KOG2003 TPR repeat-containing 99.5 2.4E-11 5.3E-16 111.9 23.9 254 91-348 429-689 (840)
40 KOG2002 TPR-containing nuclear 99.4 3.9E-10 8.5E-15 113.4 30.5 333 15-350 267-677 (1018)
41 TIGR02521 type_IV_pilW type IV 99.4 7E-11 1.5E-15 106.6 23.0 197 150-347 30-231 (234)
42 KOG4318 Bicoid mRNA stability 99.4 1.1E-11 2.4E-16 122.9 18.0 266 102-407 11-277 (1088)
43 KOG1155 Anaphase-promoting com 99.4 2.5E-10 5.3E-15 105.9 25.0 232 9-244 253-493 (559)
44 COG2956 Predicted N-acetylgluc 99.4 3.3E-10 7.1E-15 100.5 24.5 288 64-356 49-355 (389)
45 KOG4422 Uncharacterized conser 99.4 3.2E-09 7E-14 97.6 30.8 329 17-350 206-592 (625)
46 COG3071 HemY Uncharacterized e 99.4 1.9E-09 4E-14 98.6 28.6 278 63-348 97-390 (400)
47 KOG0495 HAT repeat protein [RN 99.4 6.8E-09 1.5E-13 100.3 33.2 301 51-361 585-891 (913)
48 COG2956 Predicted N-acetylgluc 99.4 1.1E-09 2.4E-14 97.2 25.1 262 31-296 48-326 (389)
49 KOG2002 TPR-containing nuclear 99.4 1.3E-09 2.8E-14 109.8 28.6 309 50-362 270-607 (1018)
50 KOG0547 Translocase of outer m 99.3 9.7E-10 2.1E-14 102.6 25.6 211 130-346 340-564 (606)
51 PRK12370 invasion protein regu 99.3 1.1E-09 2.4E-14 111.7 28.6 257 80-349 255-536 (553)
52 COG3071 HemY Uncharacterized e 99.3 4.7E-09 1E-13 96.1 29.2 277 31-314 97-390 (400)
53 PF13041 PPR_2: PPR repeat fam 99.3 3.4E-12 7.4E-17 84.3 6.7 50 79-128 1-50 (50)
54 PF13041 PPR_2: PPR repeat fam 99.3 6.7E-12 1.5E-16 82.8 6.9 50 180-229 1-50 (50)
55 KOG0495 HAT repeat protein [RN 99.3 1.6E-08 3.5E-13 97.8 31.7 318 24-348 412-782 (913)
56 TIGR02521 type_IV_pilW type IV 99.3 1.8E-09 3.9E-14 97.3 23.8 161 81-244 31-196 (234)
57 KOG2076 RNA polymerase III tra 99.3 1.2E-08 2.5E-13 102.4 30.2 345 2-349 158-556 (895)
58 PRK12370 invasion protein regu 99.3 1.6E-09 3.4E-14 110.6 24.7 256 49-315 255-536 (553)
59 KOG1173 Anaphase-promoting com 99.3 4E-09 8.6E-14 100.4 24.4 261 81-347 244-517 (611)
60 KOG4318 Bicoid mRNA stability 99.2 1.5E-09 3.2E-14 108.1 22.0 249 4-268 11-286 (1088)
61 KOG1840 Kinesin light chain [C 99.2 3.7E-09 8.1E-14 103.3 23.4 232 116-347 199-478 (508)
62 KOG1174 Anaphase-promoting com 99.2 4.7E-08 1E-12 89.8 27.6 295 20-320 196-506 (564)
63 KOG1129 TPR repeat-containing 99.2 1.5E-09 3.2E-14 96.5 16.4 229 85-348 227-458 (478)
64 KOG1915 Cell cycle control pro 99.2 2.3E-07 4.9E-12 86.8 31.1 341 2-349 126-537 (677)
65 PRK11189 lipoprotein NlpI; Pro 99.2 3.2E-08 7E-13 92.6 25.8 221 95-323 40-274 (296)
66 KOG1840 Kinesin light chain [C 99.2 1.9E-08 4.1E-13 98.4 24.4 231 83-313 201-478 (508)
67 KOG0547 Translocase of outer m 99.1 6.7E-08 1.5E-12 90.6 24.7 288 55-348 120-491 (606)
68 PRK11189 lipoprotein NlpI; Pro 99.1 1.7E-08 3.7E-13 94.4 21.3 212 130-350 40-267 (296)
69 KOG1174 Anaphase-promoting com 99.1 8.5E-07 1.8E-11 81.7 30.4 154 189-346 341-498 (564)
70 KOG1129 TPR repeat-containing 99.1 1.2E-08 2.5E-13 90.9 17.4 226 54-284 227-461 (478)
71 KOG1173 Anaphase-promoting com 99.1 1.2E-07 2.6E-12 90.6 24.9 273 50-325 244-529 (611)
72 KOG4162 Predicted calmodulin-b 99.0 6.1E-07 1.3E-11 88.9 29.3 334 12-348 317-783 (799)
73 PF12569 NARP1: NMDA receptor- 99.0 1.5E-07 3.2E-12 93.3 25.4 147 201-350 130-293 (517)
74 cd05804 StaR_like StaR_like; a 99.0 2.5E-06 5.3E-11 82.6 30.1 258 89-349 51-337 (355)
75 PF04733 Coatomer_E: Coatomer 98.9 3E-08 6.6E-13 91.5 15.8 144 194-347 114-264 (290)
76 KOG1156 N-terminal acetyltrans 98.9 9.9E-06 2.1E-10 79.0 32.8 127 18-145 41-172 (700)
77 COG3063 PilF Tfp pilus assembl 98.9 9.4E-08 2E-12 81.4 16.9 162 185-350 38-204 (250)
78 PF12569 NARP1: NMDA receptor- 98.9 1.7E-06 3.8E-11 85.8 28.0 123 222-347 199-333 (517)
79 KOG1125 TPR repeat-containing 98.9 4.6E-08 1E-12 93.7 15.7 219 126-347 295-526 (579)
80 KOG0624 dsRNA-activated protei 98.9 8.4E-06 1.8E-10 73.6 28.3 298 17-321 37-377 (504)
81 COG3063 PilF Tfp pilus assembl 98.9 9.6E-07 2.1E-11 75.4 19.9 189 156-346 40-234 (250)
82 PF04733 Coatomer_E: Coatomer 98.8 3E-07 6.5E-12 84.9 18.2 226 83-319 37-270 (290)
83 cd05804 StaR_like StaR_like; a 98.8 6.1E-06 1.3E-10 79.9 28.3 291 19-314 7-336 (355)
84 KOG2376 Signal recognition par 98.8 4E-05 8.6E-10 74.2 31.8 121 221-345 380-517 (652)
85 KOG2047 mRNA splicing factor [ 98.8 1.6E-05 3.5E-10 77.5 28.8 335 8-347 234-686 (835)
86 KOG2047 mRNA splicing factor [ 98.8 2.2E-05 4.7E-10 76.6 29.5 319 21-343 105-535 (835)
87 PF12854 PPR_1: PPR repeat 98.8 1.3E-08 2.8E-13 60.4 4.1 34 12-45 1-34 (34)
88 KOG3785 Uncharacterized conser 98.8 7.2E-06 1.6E-10 74.2 23.2 120 24-145 63-214 (557)
89 KOG4340 Uncharacterized conser 98.7 3.9E-06 8.4E-11 74.2 21.0 301 21-344 13-335 (459)
90 KOG1070 rRNA processing protei 98.7 1.1E-06 2.3E-11 92.3 20.3 201 148-352 1455-1667(1710)
91 KOG0624 dsRNA-activated protei 98.7 3.1E-05 6.8E-10 70.0 26.7 290 54-349 42-371 (504)
92 PRK04841 transcriptional regul 98.7 3.8E-05 8.2E-10 84.1 32.4 322 28-349 384-761 (903)
93 KOG1156 N-terminal acetyltrans 98.7 5.2E-05 1.1E-09 74.2 28.1 326 20-350 10-436 (700)
94 TIGR03302 OM_YfiO outer membra 98.7 2.1E-06 4.6E-11 77.7 18.2 182 149-348 31-232 (235)
95 KOG2376 Signal recognition par 98.7 6.1E-05 1.3E-09 73.0 27.5 307 25-343 19-400 (652)
96 KOG3616 Selective LIM binding 98.6 1.5E-05 3.3E-10 78.6 23.6 287 21-343 618-932 (1636)
97 KOG0985 Vesicle coat protein c 98.6 9.2E-05 2E-09 75.8 29.1 319 3-347 967-1369(1666)
98 KOG1070 rRNA processing protei 98.6 8.7E-06 1.9E-10 85.7 22.4 229 6-236 1447-1690(1710)
99 PF12854 PPR_1: PPR repeat 98.6 8.9E-08 1.9E-12 56.8 4.4 33 146-178 2-34 (34)
100 PRK04841 transcriptional regul 98.6 0.00029 6.3E-09 77.2 35.1 326 23-348 346-720 (903)
101 KOG4340 Uncharacterized conser 98.6 1.7E-05 3.6E-10 70.3 19.9 158 17-179 43-206 (459)
102 KOG0548 Molecular co-chaperone 98.6 5.8E-05 1.3E-09 72.3 24.3 322 26-349 10-456 (539)
103 KOG1128 Uncharacterized conser 98.5 3.7E-06 8.1E-11 83.0 16.6 216 14-244 394-614 (777)
104 PRK10370 formate-dependent nit 98.5 7.8E-06 1.7E-10 71.3 17.0 118 230-349 52-174 (198)
105 KOG1128 Uncharacterized conser 98.5 6.9E-06 1.5E-10 81.2 17.3 190 146-350 393-584 (777)
106 PRK14720 transcript cleavage f 98.5 4.9E-05 1.1E-09 79.5 24.2 234 17-296 30-268 (906)
107 KOG1125 TPR repeat-containing 98.5 1E-05 2.2E-10 78.1 17.7 244 91-339 295-562 (579)
108 PLN02789 farnesyltranstransfer 98.5 7.7E-05 1.7E-09 70.0 23.3 231 83-346 39-300 (320)
109 TIGR03302 OM_YfiO outer membra 98.4 1.9E-05 4.1E-10 71.5 17.9 182 114-316 31-234 (235)
110 KOG4162 Predicted calmodulin-b 98.4 0.00042 9E-09 69.4 27.7 298 49-348 322-749 (799)
111 PRK15359 type III secretion sy 98.4 7.9E-06 1.7E-10 67.4 13.3 104 222-328 29-135 (144)
112 KOG3616 Selective LIM binding 98.4 8.8E-05 1.9E-09 73.5 22.1 106 191-308 741-847 (1636)
113 PRK15179 Vi polysaccharide bio 98.4 3.8E-05 8.2E-10 79.4 20.7 160 180-350 84-247 (694)
114 PRK10370 formate-dependent nit 98.4 3.2E-05 6.9E-10 67.5 17.5 153 158-322 23-181 (198)
115 COG5010 TadD Flp pilus assembl 98.4 3.7E-05 7.9E-10 67.3 17.1 117 223-341 106-224 (257)
116 PRK15359 type III secretion sy 98.4 6.2E-06 1.3E-10 68.1 11.7 95 255-349 26-122 (144)
117 PLN02789 farnesyltranstransfer 98.4 0.0006 1.3E-08 64.0 26.1 210 51-265 38-267 (320)
118 KOG3617 WD40 and TPR repeat-co 98.3 6.6E-05 1.4E-09 75.3 19.5 58 17-77 725-784 (1416)
119 COG4783 Putative Zn-dependent 98.3 0.00023 4.9E-09 67.8 22.3 176 167-347 253-436 (484)
120 COG4783 Putative Zn-dependent 98.3 0.00015 3.3E-09 69.0 20.9 116 90-207 315-433 (484)
121 COG5010 TadD Flp pilus assembl 98.3 7.3E-05 1.6E-09 65.5 17.4 154 54-209 70-229 (257)
122 KOG1127 TPR repeat-containing 98.3 0.0001 2.2E-09 75.5 20.2 81 264-344 827-909 (1238)
123 KOG0548 Molecular co-chaperone 98.3 0.00054 1.2E-08 65.9 23.8 285 58-348 10-421 (539)
124 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3E-11 52.3 4.4 35 82-116 1-35 (35)
125 PRK15363 pathogenicity island 98.3 2.8E-05 6.1E-10 63.4 13.0 95 253-347 35-131 (157)
126 PRK15179 Vi polysaccharide bio 98.3 0.00029 6.2E-09 73.0 23.0 142 147-292 82-229 (694)
127 KOG3785 Uncharacterized conser 98.2 0.00042 9.1E-09 63.2 20.8 328 16-351 118-493 (557)
128 KOG3617 WD40 and TPR repeat-co 98.2 0.00026 5.6E-09 71.2 21.0 239 50-313 726-995 (1416)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.3E-05 9.3E-10 73.2 15.1 120 85-209 173-295 (395)
130 KOG3081 Vesicle coat complex C 98.2 0.0016 3.5E-08 57.3 23.1 114 229-346 149-269 (299)
131 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.8E-11 51.4 4.1 35 183-217 1-35 (35)
132 KOG3081 Vesicle coat complex C 98.2 0.00042 9.2E-09 60.8 19.1 187 157-350 47-238 (299)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.6E-05 7.7E-10 73.7 13.9 122 220-346 172-295 (395)
134 KOG1914 mRNA cleavage and poly 98.2 0.0049 1.1E-07 59.6 27.6 334 15-351 17-467 (656)
135 PF13812 PPR_3: Pentatricopept 98.2 3.7E-06 8E-11 50.1 4.4 33 82-114 2-34 (34)
136 KOG0985 Vesicle coat protein c 98.2 0.0029 6.3E-08 65.4 26.9 242 49-305 1103-1374(1666)
137 TIGR02552 LcrH_SycD type III s 98.2 3.6E-05 7.9E-10 62.9 11.7 96 253-348 17-114 (135)
138 TIGR02552 LcrH_SycD type III s 98.1 0.00013 2.7E-09 59.6 13.6 99 119-220 20-121 (135)
139 KOG3060 Uncharacterized conser 98.1 0.0007 1.5E-08 59.0 18.2 167 154-323 55-229 (289)
140 PF13812 PPR_3: Pentatricopept 98.0 7.8E-06 1.7E-10 48.6 4.2 33 183-215 2-34 (34)
141 PF09976 TPR_21: Tetratricopep 98.0 0.00079 1.7E-08 55.7 16.2 123 83-207 14-143 (145)
142 cd00189 TPR Tetratricopeptide 97.9 0.00013 2.9E-09 54.5 10.1 92 256-347 3-96 (100)
143 PRK14720 transcript cleavage f 97.9 0.002 4.4E-08 67.7 20.9 221 78-349 28-253 (906)
144 PF01535 PPR: PPR repeat; Int 97.9 1.5E-05 3.3E-10 46.2 3.3 31 82-112 1-31 (31)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00043 9.2E-09 57.3 13.1 85 259-344 54-143 (145)
146 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5E-10 45.4 3.1 31 183-213 1-31 (31)
147 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00039 8.5E-09 55.1 11.1 65 256-320 42-111 (119)
148 KOG3060 Uncharacterized conser 97.8 0.0067 1.5E-07 53.1 18.9 161 184-348 54-220 (289)
149 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00043 9.4E-09 54.8 11.0 96 254-349 3-106 (119)
150 PF12895 Apc3: Anaphase-promot 97.7 4.3E-05 9.4E-10 56.5 4.6 78 266-344 2-83 (84)
151 KOG2053 Mitochondrial inherita 97.7 0.027 5.8E-07 58.0 25.2 221 93-318 21-259 (932)
152 PF13414 TPR_11: TPR repeat; P 97.7 0.00012 2.6E-09 51.7 6.4 64 284-347 2-66 (69)
153 KOG1127 TPR repeat-containing 97.7 0.0039 8.5E-08 64.5 18.5 52 153-204 494-548 (1238)
154 cd00189 TPR Tetratricopeptide 97.7 0.00076 1.6E-08 50.3 10.8 91 84-176 3-93 (100)
155 PF04840 Vps16_C: Vps16, C-ter 97.6 0.06 1.3E-06 50.6 25.6 112 217-345 177-288 (319)
156 PLN03088 SGT1, suppressor of 97.6 0.00052 1.1E-08 65.9 10.6 103 224-328 9-113 (356)
157 PF05843 Suf: Suppressor of fo 97.6 0.0027 5.9E-08 58.8 14.9 141 183-327 2-148 (280)
158 PRK02603 photosystem I assembl 97.6 0.0035 7.5E-08 53.5 14.3 130 80-231 34-165 (172)
159 KOG2796 Uncharacterized conser 97.6 0.02 4.3E-07 50.5 18.5 192 20-211 71-315 (366)
160 PF13432 TPR_16: Tetratricopep 97.6 0.00026 5.6E-09 49.3 6.0 57 291-347 3-59 (65)
161 KOG1914 mRNA cleavage and poly 97.6 0.016 3.4E-07 56.3 19.5 172 97-270 347-527 (656)
162 PRK02603 photosystem I assembl 97.6 0.0013 2.8E-08 56.2 11.5 82 253-334 35-121 (172)
163 CHL00033 ycf3 photosystem I as 97.5 0.0014 2.9E-08 55.8 11.2 94 252-345 34-139 (168)
164 KOG0550 Molecular chaperone (D 97.5 0.0041 8.8E-08 58.2 14.6 153 191-349 178-351 (486)
165 PF14938 SNAP: Soluble NSF att 97.5 0.017 3.7E-07 53.7 19.2 194 85-279 39-263 (282)
166 PF05843 Suf: Suppressor of fo 97.5 0.0044 9.5E-08 57.4 15.1 128 82-211 2-136 (280)
167 PRK10153 DNA-binding transcrip 97.5 0.0061 1.3E-07 61.3 16.9 64 284-348 419-482 (517)
168 PRK15363 pathogenicity island 97.5 0.004 8.7E-08 51.0 12.4 89 86-176 40-128 (157)
169 PF10037 MRP-S27: Mitochondria 97.4 0.0049 1.1E-07 59.6 14.9 121 110-230 60-186 (429)
170 PF08579 RPM2: Mitochondrial r 97.4 0.0038 8.2E-08 47.5 11.0 81 83-163 27-116 (120)
171 CHL00033 ycf3 photosystem I as 97.4 0.0057 1.2E-07 51.9 14.0 81 81-162 35-117 (168)
172 PLN03088 SGT1, suppressor of 97.4 0.002 4.3E-08 61.9 12.3 102 188-293 8-111 (356)
173 PF12688 TPR_5: Tetratrico pep 97.4 0.0087 1.9E-07 47.2 13.6 108 86-193 6-117 (120)
174 PF12895 Apc3: Anaphase-promot 97.4 0.00042 9E-09 51.2 5.9 80 94-175 2-82 (84)
175 PF13432 TPR_16: Tetratricopep 97.4 0.00083 1.8E-08 46.7 6.8 61 259-319 3-65 (65)
176 KOG1130 Predicted G-alpha GTPa 97.4 0.0016 3.5E-08 60.7 10.0 257 90-347 26-343 (639)
177 PF14559 TPR_19: Tetratricopep 97.3 0.00036 7.7E-09 49.1 4.3 52 296-347 2-53 (68)
178 KOG0553 TPR repeat-containing 97.3 0.002 4.3E-08 57.8 9.4 87 230-319 94-183 (304)
179 KOG2053 Mitochondrial inherita 97.3 0.31 6.8E-06 50.5 34.2 322 29-354 54-508 (932)
180 PF13371 TPR_9: Tetratricopept 97.2 0.0011 2.3E-08 47.4 6.2 56 293-348 3-58 (73)
181 PRK15331 chaperone protein Sic 97.2 0.0043 9.3E-08 51.1 10.2 89 259-347 43-133 (165)
182 PRK10866 outer membrane biogen 97.2 0.034 7.4E-07 50.2 17.2 56 55-110 37-98 (243)
183 KOG0553 TPR repeat-containing 97.2 0.0036 7.7E-08 56.3 10.4 99 190-293 89-190 (304)
184 PRK10153 DNA-binding transcrip 97.2 0.019 4.2E-07 57.8 17.0 48 229-279 432-479 (517)
185 PF10037 MRP-S27: Mitochondria 97.2 0.0081 1.8E-07 58.1 13.6 122 211-332 60-186 (429)
186 COG4700 Uncharacterized protei 97.2 0.061 1.3E-06 45.0 16.6 97 114-210 87-188 (251)
187 KOG1538 Uncharacterized conser 97.2 0.029 6.4E-07 55.5 17.0 226 18-284 556-805 (1081)
188 PF14938 SNAP: Soluble NSF att 97.2 0.032 6.8E-07 51.9 17.0 114 188-316 100-227 (282)
189 COG4235 Cytochrome c biogenesi 97.2 0.0059 1.3E-07 55.1 11.2 102 250-351 153-259 (287)
190 KOG2041 WD40 repeat protein [G 97.1 0.2 4.4E-06 50.4 22.2 34 147-180 848-881 (1189)
191 PF08579 RPM2: Mitochondrial r 97.1 0.0054 1.2E-07 46.7 9.0 81 184-265 27-116 (120)
192 PF04840 Vps16_C: Vps16, C-ter 97.1 0.25 5.3E-06 46.5 23.7 103 159-278 185-287 (319)
193 PF13281 DUF4071: Domain of un 97.1 0.088 1.9E-06 50.0 19.1 161 156-319 146-339 (374)
194 PRK10866 outer membrane biogen 97.1 0.073 1.6E-06 48.1 18.1 174 156-346 37-239 (243)
195 PF06239 ECSIT: Evolutionarily 97.1 0.0052 1.1E-07 52.8 9.5 97 171-268 34-153 (228)
196 COG3898 Uncharacterized membra 97.1 0.28 6E-06 46.1 28.0 300 34-348 69-392 (531)
197 PF13414 TPR_11: TPR repeat; P 97.1 0.0017 3.7E-08 45.7 5.6 65 252-316 2-69 (69)
198 PF14559 TPR_19: Tetratricopep 97.0 0.0012 2.6E-08 46.3 4.7 54 265-318 3-58 (68)
199 KOG2280 Vacuolar assembly/sort 97.0 0.52 1.1E-05 48.0 25.0 315 12-343 426-794 (829)
200 COG4700 Uncharacterized protei 96.9 0.15 3.2E-06 42.8 16.4 132 213-347 85-221 (251)
201 PRK10803 tol-pal system protei 96.9 0.01 2.2E-07 54.2 10.2 95 254-348 144-246 (263)
202 PF03704 BTAD: Bacterial trans 96.8 0.0039 8.5E-08 51.6 6.9 69 286-354 63-136 (146)
203 KOG2041 WD40 repeat protein [G 96.8 0.24 5.3E-06 49.8 19.6 187 65-279 678-878 (1189)
204 PF12688 TPR_5: Tetratrico pep 96.8 0.025 5.4E-07 44.6 10.8 86 260-345 8-101 (120)
205 PF06239 ECSIT: Evolutionarily 96.8 0.018 3.9E-07 49.6 10.6 96 70-165 34-152 (228)
206 PF13431 TPR_17: Tetratricopep 96.7 0.0011 2.5E-08 39.0 2.2 33 308-340 2-34 (34)
207 PF13525 YfiO: Outer membrane 96.7 0.093 2E-06 46.1 14.9 53 58-110 13-71 (203)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.011 2.4E-07 56.9 8.7 62 253-314 75-141 (453)
209 PF13428 TPR_14: Tetratricopep 96.5 0.0048 1E-07 38.9 4.2 42 286-327 2-43 (44)
210 KOG2796 Uncharacterized conser 96.5 0.22 4.8E-06 44.1 15.2 230 81-318 69-319 (366)
211 KOG0550 Molecular chaperone (D 96.5 0.66 1.4E-05 44.0 19.0 250 26-279 57-347 (486)
212 PF04053 Coatomer_WDAD: Coatom 96.5 0.19 4E-06 49.6 16.6 130 21-176 298-427 (443)
213 PF13371 TPR_9: Tetratricopept 96.4 0.013 2.9E-07 41.6 6.6 62 261-322 3-66 (73)
214 COG3898 Uncharacterized membra 96.4 0.93 2E-05 42.7 24.3 59 255-313 331-391 (531)
215 PF12921 ATP13: Mitochondrial 96.3 0.052 1.1E-06 43.2 9.9 48 248-295 47-98 (126)
216 PRK10803 tol-pal system protei 96.3 0.055 1.2E-06 49.4 11.2 101 219-319 145-251 (263)
217 COG4235 Cytochrome c biogenesi 96.3 0.11 2.4E-06 47.1 12.7 98 113-211 153-256 (287)
218 PF12921 ATP13: Mitochondrial 96.1 0.051 1.1E-06 43.3 9.0 54 212-265 47-100 (126)
219 PF09205 DUF1955: Domain of un 96.1 0.5 1.1E-05 37.3 16.0 140 193-351 13-152 (161)
220 KOG1585 Protein required for f 96.0 0.89 1.9E-05 40.1 16.3 86 256-342 153-250 (308)
221 KOG0543 FKBP-type peptidyl-pro 96.0 0.11 2.3E-06 49.1 11.6 88 261-348 216-320 (397)
222 PF13525 YfiO: Outer membrane 96.0 0.96 2.1E-05 39.6 19.0 65 82-146 6-72 (203)
223 PF13424 TPR_12: Tetratricopep 96.0 0.022 4.9E-07 41.1 5.9 56 153-208 7-72 (78)
224 KOG1130 Predicted G-alpha GTPa 96.0 0.08 1.7E-06 49.8 10.5 243 2-244 36-342 (639)
225 KOG1538 Uncharacterized conser 95.9 0.28 6.1E-06 49.0 14.5 154 8-179 625-801 (1081)
226 PF13424 TPR_12: Tetratricopep 95.9 0.017 3.7E-07 41.7 4.7 61 286-346 6-73 (78)
227 COG0457 NrfG FOG: TPR repeat [ 95.8 1.2 2.6E-05 39.0 27.1 192 152-347 60-264 (291)
228 KOG0890 Protein kinase of the 95.8 3.6 7.8E-05 47.9 23.9 317 23-350 1388-1733(2382)
229 COG3118 Thioredoxin domain-con 95.7 1.6 3.5E-05 39.8 17.2 174 169-345 121-299 (304)
230 KOG0543 FKBP-type peptidyl-pro 95.7 0.17 3.6E-06 47.9 11.4 119 58-178 216-353 (397)
231 PF13281 DUF4071: Domain of un 95.7 1.5 3.2E-05 42.0 17.8 74 53-126 144-227 (374)
232 PF03704 BTAD: Bacterial trans 95.6 0.092 2E-06 43.3 9.0 71 83-154 64-139 (146)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.1 2.2E-06 50.4 9.4 61 216-279 74-138 (453)
234 KOG2280 Vacuolar assembly/sort 95.4 3.7 8E-05 42.2 22.4 109 184-309 686-794 (829)
235 COG0457 NrfG FOG: TPR repeat [ 95.3 1.9 4E-05 37.7 23.9 219 95-317 37-268 (291)
236 KOG3941 Intermediate in Toll s 95.2 0.16 3.4E-06 45.5 8.9 101 169-270 52-175 (406)
237 KOG2610 Uncharacterized conser 95.1 0.62 1.3E-05 42.9 12.8 113 195-310 116-234 (491)
238 smart00299 CLH Clathrin heavy 95.0 1.6 3.5E-05 35.5 14.4 43 121-164 12-54 (140)
239 PRK15331 chaperone protein Sic 94.9 0.43 9.3E-06 39.5 10.2 87 90-178 46-132 (165)
240 PF04053 Coatomer_WDAD: Coatom 94.8 0.43 9.4E-06 47.1 12.1 106 220-349 298-403 (443)
241 COG4105 ComL DNA uptake lipopr 94.8 2.9 6.3E-05 37.4 17.0 177 51-245 35-232 (254)
242 COG1729 Uncharacterized protei 94.8 0.28 6E-06 44.0 9.5 91 255-348 144-244 (262)
243 PF08631 SPO22: Meiosis protei 94.7 3.5 7.6E-05 38.2 22.7 96 83-179 38-149 (278)
244 COG5107 RNA14 Pre-mRNA 3'-end 94.6 4.6 0.0001 39.0 28.5 126 219-346 399-529 (660)
245 PRK11906 transcriptional regul 94.6 0.64 1.4E-05 45.2 12.1 115 233-347 274-400 (458)
246 KOG2066 Vacuolar assembly/sort 94.5 7 0.00015 40.5 23.5 152 25-182 363-536 (846)
247 PF07079 DUF1347: Protein of u 94.4 5.2 0.00011 38.8 21.6 274 28-319 16-332 (549)
248 PF10300 DUF3808: Protein of u 94.4 1.8 3.9E-05 43.4 15.4 26 21-46 191-216 (468)
249 KOG3941 Intermediate in Toll s 94.2 0.53 1.2E-05 42.3 9.9 97 70-166 54-173 (406)
250 PF13512 TPR_18: Tetratricopep 94.2 1.3 2.8E-05 35.9 11.3 59 262-320 19-82 (142)
251 PF10300 DUF3808: Protein of u 94.2 2.6 5.5E-05 42.3 16.1 160 185-347 191-375 (468)
252 KOG1920 IkappaB kinase complex 94.2 10 0.00022 41.3 22.0 26 84-109 793-820 (1265)
253 PRK11906 transcriptional regul 94.1 2.5 5.5E-05 41.2 15.0 158 183-343 252-431 (458)
254 smart00299 CLH Clathrin heavy 94.0 2.8 6E-05 34.1 15.2 39 157-195 13-54 (140)
255 PF00515 TPR_1: Tetratricopept 94.0 0.12 2.5E-06 30.2 3.9 32 286-317 2-33 (34)
256 COG3629 DnrI DNA-binding trans 93.9 0.31 6.8E-06 44.4 8.3 63 285-347 153-215 (280)
257 KOG4555 TPR repeat-containing 93.9 0.75 1.6E-05 36.3 8.9 89 262-350 52-146 (175)
258 PF07719 TPR_2: Tetratricopept 93.7 0.2 4.3E-06 29.0 4.6 33 286-318 2-34 (34)
259 PRK11619 lytic murein transgly 93.7 10 0.00023 39.6 29.4 77 269-345 295-372 (644)
260 KOG4555 TPR repeat-containing 93.5 0.51 1.1E-05 37.1 7.4 90 226-317 52-147 (175)
261 KOG2610 Uncharacterized conser 93.3 2.4 5.3E-05 39.2 12.5 151 93-244 115-274 (491)
262 PF13512 TPR_18: Tetratricopep 93.2 2.8 6E-05 34.0 11.6 62 189-251 17-81 (142)
263 PF09205 DUF1955: Domain of un 92.9 1.8 4E-05 34.3 9.7 85 61-147 67-151 (161)
264 KOG1585 Protein required for f 92.8 6.5 0.00014 34.9 14.5 195 21-239 34-249 (308)
265 KOG1941 Acetylcholine receptor 92.8 1.7 3.7E-05 40.6 11.0 46 91-136 16-63 (518)
266 PF13428 TPR_14: Tetratricopep 92.8 0.47 1E-05 29.6 5.5 29 82-110 2-30 (44)
267 COG5107 RNA14 Pre-mRNA 3'-end 92.8 10 0.00022 36.9 19.3 133 182-318 397-535 (660)
268 PF13176 TPR_7: Tetratricopept 92.7 0.3 6.6E-06 29.0 4.2 26 83-108 1-26 (36)
269 PRK09687 putative lyase; Provi 92.4 9.2 0.0002 35.4 26.7 61 252-316 205-265 (280)
270 COG3118 Thioredoxin domain-con 92.2 9.1 0.0002 35.1 17.8 117 124-244 142-263 (304)
271 PF04184 ST7: ST7 protein; In 92.2 3.6 7.8E-05 40.4 12.8 62 289-350 263-326 (539)
272 PF13170 DUF4003: Protein of u 92.0 3.8 8.3E-05 38.2 12.6 61 199-260 160-224 (297)
273 KOG1941 Acetylcholine receptor 92.0 6 0.00013 37.2 13.4 43 61-103 17-65 (518)
274 KOG0276 Vesicle coat complex C 91.9 4.1 9E-05 40.8 13.0 148 31-207 599-746 (794)
275 COG3629 DnrI DNA-binding trans 91.9 1.7 3.7E-05 39.7 9.9 76 151-226 153-236 (280)
276 PF04184 ST7: ST7 protein; In 91.9 14 0.0003 36.5 16.6 138 93-244 180-322 (539)
277 PF02259 FAT: FAT domain; Int 91.7 13 0.00027 35.6 18.0 67 284-350 145-215 (352)
278 PF13170 DUF4003: Protein of u 91.7 4.8 0.00011 37.5 13.0 126 97-224 78-224 (297)
279 COG1729 Uncharacterized protei 91.6 3.8 8.3E-05 36.9 11.6 90 231-320 155-250 (262)
280 COG4105 ComL DNA uptake lipopr 91.5 10 0.00022 34.1 19.2 58 290-347 172-232 (254)
281 COG4785 NlpI Lipoprotein NlpI, 91.5 8.8 0.00019 33.5 13.6 183 161-350 75-268 (297)
282 COG4649 Uncharacterized protei 91.5 3.7 7.9E-05 34.3 10.4 124 92-215 69-200 (221)
283 PF13176 TPR_7: Tetratricopept 91.3 0.41 8.9E-06 28.4 3.7 26 321-346 1-26 (36)
284 COG3947 Response regulator con 91.1 12 0.00026 34.2 15.0 59 289-347 283-341 (361)
285 COG4649 Uncharacterized protei 91.0 4.3 9.3E-05 33.9 10.3 49 265-313 144-195 (221)
286 PF02259 FAT: FAT domain; Int 90.3 17 0.00037 34.7 19.8 147 180-329 144-302 (352)
287 PF13181 TPR_8: Tetratricopept 90.0 0.58 1.3E-05 27.1 3.6 30 287-316 3-32 (34)
288 TIGR02508 type_III_yscG type I 89.9 6.8 0.00015 29.4 10.1 61 57-120 46-106 (115)
289 KOG2114 Vacuolar assembly/sort 89.9 15 0.00033 38.5 15.2 179 118-311 336-516 (933)
290 PF00515 TPR_1: Tetratricopept 89.9 0.87 1.9E-05 26.3 4.3 29 82-110 2-30 (34)
291 PF10602 RPN7: 26S proteasome 89.5 6 0.00013 33.7 10.8 94 152-245 37-141 (177)
292 KOG4234 TPR repeat-containing 89.4 2.4 5.2E-05 36.3 7.8 88 262-349 104-198 (271)
293 PF08631 SPO22: Meiosis protei 89.3 18 0.00039 33.4 23.6 18 92-109 4-21 (278)
294 KOG2396 HAT (Half-A-TPR) repea 88.8 26 0.00057 34.7 16.9 278 35-322 268-568 (568)
295 PF10602 RPN7: 26S proteasome 88.7 6.9 0.00015 33.3 10.6 63 82-144 37-101 (177)
296 KOG0276 Vesicle coat complex C 88.2 8.4 0.00018 38.8 11.7 51 152-207 667-717 (794)
297 PF09613 HrpB1_HrpK: Bacterial 88.0 14 0.0003 30.6 11.9 68 228-298 21-90 (160)
298 KOG1586 Protein required for f 88.0 19 0.0004 31.9 12.7 56 262-317 163-227 (288)
299 KOG1920 IkappaB kinase complex 87.5 50 0.0011 36.4 19.8 111 158-279 915-1025(1265)
300 KOG1258 mRNA processing protei 87.3 36 0.00077 34.5 28.9 182 150-334 296-490 (577)
301 PF13431 TPR_17: Tetratricopep 87.0 1.1 2.3E-05 26.2 3.2 24 148-171 10-33 (34)
302 COG1747 Uncharacterized N-term 86.8 35 0.00076 33.9 22.6 91 151-244 66-158 (711)
303 PF07719 TPR_2: Tetratricopept 86.7 1.8 4E-05 24.7 4.3 29 82-110 2-30 (34)
304 COG1747 Uncharacterized N-term 86.6 36 0.00078 33.8 18.8 159 80-245 65-233 (711)
305 TIGR02561 HrpB1_HrpK type III 86.6 4.6 9.9E-05 32.9 7.5 52 298-349 23-74 (153)
306 PF13374 TPR_10: Tetratricopep 86.4 1.9 4.2E-05 26.0 4.5 28 82-109 3-30 (42)
307 PF07035 Mic1: Colon cancer-as 86.3 19 0.0004 30.3 13.2 132 6-145 17-149 (167)
308 PRK09687 putative lyase; Provi 85.7 30 0.00064 32.1 25.8 239 44-296 32-278 (280)
309 KOG2114 Vacuolar assembly/sort 85.6 53 0.0011 34.8 21.1 121 51-178 335-458 (933)
310 PF00637 Clathrin: Region in C 85.4 0.88 1.9E-05 37.2 3.2 69 5-77 29-97 (143)
311 KOG4570 Uncharacterized conser 85.4 17 0.00036 33.7 11.2 91 51-145 65-164 (418)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 85.2 4 8.7E-05 30.4 6.0 63 197-261 22-84 (103)
313 COG2976 Uncharacterized protei 85.2 14 0.0003 31.7 10.0 128 17-146 53-189 (207)
314 KOG1464 COP9 signalosome, subu 85.0 29 0.00063 31.4 17.3 238 65-309 42-327 (440)
315 PF00637 Clathrin: Region in C 84.9 0.73 1.6E-05 37.7 2.5 49 158-206 14-66 (143)
316 KOG4570 Uncharacterized conser 84.9 7.8 0.00017 35.7 8.9 96 146-245 59-163 (418)
317 PF11207 DUF2989: Protein of u 84.7 10 0.00022 32.8 9.1 72 98-170 123-197 (203)
318 PF07079 DUF1347: Protein of u 84.5 43 0.00092 32.8 25.9 323 15-345 125-521 (549)
319 PF02284 COX5A: Cytochrome c o 84.2 4.2 9.1E-05 30.6 5.8 60 200-261 28-87 (108)
320 PF06552 TOM20_plant: Plant sp 84.1 11 0.00023 32.0 8.8 44 301-351 96-139 (186)
321 KOG1258 mRNA processing protei 83.9 52 0.0011 33.4 19.9 178 49-228 296-486 (577)
322 PF13374 TPR_10: Tetratricopep 83.8 2.9 6.3E-05 25.2 4.4 28 183-210 3-30 (42)
323 PF07721 TPR_4: Tetratricopept 83.8 1.6 3.5E-05 23.6 2.8 24 320-343 2-25 (26)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 83.4 10 0.00022 28.4 7.4 45 99-143 25-69 (103)
325 KOG1586 Protein required for f 83.2 33 0.00071 30.5 12.3 22 296-317 165-186 (288)
326 KOG4648 Uncharacterized conser 82.8 2.8 6E-05 38.9 5.4 93 225-320 105-200 (536)
327 PRK15180 Vi polysaccharide bio 82.7 6.8 0.00015 38.2 8.1 121 193-318 300-424 (831)
328 PF13929 mRNA_stabil: mRNA sta 82.7 15 0.00033 33.6 9.9 113 198-310 144-263 (292)
329 PF02284 COX5A: Cytochrome c o 82.4 9 0.0002 28.9 6.9 49 278-326 38-86 (108)
330 TIGR02561 HrpB1_HrpK type III 82.3 26 0.00056 28.7 11.4 19 161-179 54-72 (153)
331 PF13174 TPR_6: Tetratricopept 82.2 3.1 6.7E-05 23.5 3.8 27 291-317 6-32 (33)
332 KOG4234 TPR repeat-containing 81.1 15 0.00033 31.6 8.7 89 89-179 103-196 (271)
333 PF09613 HrpB1_HrpK: Bacterial 80.5 32 0.0007 28.6 13.3 18 161-178 54-71 (160)
334 COG2976 Uncharacterized protei 80.2 38 0.00082 29.2 15.6 114 99-212 70-189 (207)
335 smart00028 TPR Tetratricopepti 80.1 3.7 8E-05 22.3 3.7 29 288-316 4-32 (34)
336 PF07721 TPR_4: Tetratricopept 79.9 3.3 7.1E-05 22.3 3.1 21 22-42 5-25 (26)
337 COG4455 ImpE Protein of avirul 79.3 8.4 0.00018 33.6 6.7 62 257-318 5-68 (273)
338 KOG1550 Extracellular protein 79.1 83 0.0018 32.5 15.4 180 167-352 228-430 (552)
339 PF14853 Fis1_TPR_C: Fis1 C-te 79.0 14 0.00031 24.1 6.4 26 322-347 4-29 (53)
340 PF11207 DUF2989: Protein of u 79.0 13 0.00029 32.0 7.9 21 284-304 177-197 (203)
341 PF13181 TPR_8: Tetratricopept 78.6 6.2 0.00013 22.5 4.3 27 83-109 3-29 (34)
342 COG4785 NlpI Lipoprotein NlpI, 78.5 46 0.001 29.2 14.9 158 81-245 99-265 (297)
343 PF07035 Mic1: Colon cancer-as 76.9 44 0.00095 28.1 14.4 99 102-208 15-115 (167)
344 KOG3364 Membrane protein invol 76.6 27 0.00058 28.1 8.3 64 284-347 31-99 (149)
345 KOG4648 Uncharacterized conser 76.5 6.8 0.00015 36.5 5.8 55 89-145 105-160 (536)
346 PF10345 Cohesin_load: Cohesin 76.1 1.1E+02 0.0023 32.2 23.4 48 296-343 372-428 (608)
347 cd08819 CARD_MDA5_2 Caspase ac 76.0 16 0.00035 26.7 6.4 39 30-70 48-86 (88)
348 PF04097 Nic96: Nup93/Nic96; 75.5 13 0.00029 38.7 8.5 19 23-41 116-134 (613)
349 PRK15180 Vi polysaccharide bio 75.2 20 0.00043 35.2 8.7 125 229-355 301-427 (831)
350 PHA02875 ankyrin repeat protei 74.8 89 0.0019 30.7 15.5 166 4-179 16-193 (413)
351 TIGR03504 FimV_Cterm FimV C-te 74.5 5.5 0.00012 24.9 3.3 27 323-349 3-29 (44)
352 TIGR02508 type_III_yscG type I 74.4 35 0.00076 25.8 9.6 86 132-221 21-106 (115)
353 PF14853 Fis1_TPR_C: Fis1 C-te 74.3 6.7 0.00015 25.7 3.9 31 290-320 6-36 (53)
354 PF13174 TPR_6: Tetratricopept 74.1 3.9 8.5E-05 23.0 2.6 28 321-348 2-29 (33)
355 PRK10941 hypothetical protein; 73.2 20 0.00044 32.8 8.1 62 287-348 183-244 (269)
356 PF11768 DUF3312: Protein of u 72.9 40 0.00087 33.9 10.4 56 155-210 412-472 (545)
357 PRK13800 putative oxidoreducta 72.1 1.6E+02 0.0036 32.5 26.8 50 251-300 787-836 (897)
358 TIGR03504 FimV_Cterm FimV C-te 72.0 9.4 0.0002 23.8 3.9 24 188-211 5-28 (44)
359 PF04910 Tcf25: Transcriptiona 70.9 1E+02 0.0022 29.7 14.8 64 284-347 99-167 (360)
360 PF10366 Vps39_1: Vacuolar sor 69.5 42 0.00091 25.8 8.0 27 184-210 41-67 (108)
361 PF07163 Pex26: Pex26 protein; 69.0 79 0.0017 29.0 10.4 86 87-174 89-181 (309)
362 COG3947 Response regulator con 68.9 97 0.0021 28.6 13.0 99 112-210 223-341 (361)
363 PF13934 ELYS: Nuclear pore co 68.8 86 0.0019 27.9 12.3 106 185-299 79-186 (226)
364 PF13762 MNE1: Mitochondrial s 68.4 41 0.00089 27.5 7.9 76 54-129 43-128 (145)
365 PF10366 Vps39_1: Vacuolar sor 68.1 53 0.0012 25.3 8.5 27 83-109 41-67 (108)
366 COG5159 RPN6 26S proteasome re 67.7 1E+02 0.0022 28.4 11.1 134 87-220 9-167 (421)
367 cd08819 CARD_MDA5_2 Caspase ac 66.8 23 0.00049 26.0 5.5 38 62-100 48-85 (88)
368 KOG1464 COP9 signalosome, subu 66.1 56 0.0012 29.6 8.9 63 285-347 105-173 (440)
369 KOG3807 Predicted membrane pro 65.9 1E+02 0.0022 28.9 10.7 17 303-319 380-396 (556)
370 PF10579 Rapsyn_N: Rapsyn N-te 65.0 13 0.00028 26.6 3.9 46 229-274 18-64 (80)
371 PF14561 TPR_20: Tetratricopep 64.8 18 0.00038 26.8 4.9 43 306-348 9-51 (90)
372 TIGR01503 MthylAspMut_E methyl 64.0 47 0.001 32.6 8.7 45 131-178 69-113 (480)
373 KOG4279 Serine/threonine prote 64.0 1.2E+02 0.0025 32.0 11.6 181 136-320 183-401 (1226)
374 PF07163 Pex26: Pex26 protein; 63.9 71 0.0015 29.3 9.2 88 188-278 89-183 (309)
375 PF09477 Type_III_YscG: Bacter 63.7 65 0.0014 24.7 9.7 77 33-111 21-99 (116)
376 KOG2297 Predicted translation 63.0 1.3E+02 0.0028 28.0 12.7 25 22-46 33-58 (412)
377 KOG2063 Vacuolar assembly/sort 62.8 2.3E+02 0.0051 30.8 14.8 126 21-163 507-638 (877)
378 PF09670 Cas_Cas02710: CRISPR- 62.5 1.1E+02 0.0025 29.7 11.3 54 191-245 140-197 (379)
379 PF06552 TOM20_plant: Plant sp 62.1 22 0.00048 30.1 5.4 46 301-346 51-100 (186)
380 smart00386 HAT HAT (Half-A-TPR 61.7 16 0.00034 20.2 3.4 29 299-327 1-29 (33)
381 KOG1308 Hsp70-interacting prot 61.2 5 0.00011 37.4 1.7 113 230-345 127-241 (377)
382 PF14669 Asp_Glu_race_2: Putat 61.1 1.1E+02 0.0023 26.4 11.0 65 12-76 2-77 (233)
383 PRK12798 chemotaxis protein; R 60.8 1.7E+02 0.0037 28.6 20.6 180 164-346 125-322 (421)
384 PF09986 DUF2225: Uncharacteri 60.2 57 0.0012 28.8 8.1 65 285-349 118-195 (214)
385 KOG4642 Chaperone-dependent E3 59.9 40 0.00087 30.1 6.7 48 297-344 56-103 (284)
386 KOG4507 Uncharacterized conser 59.8 42 0.0009 34.0 7.6 131 215-348 569-705 (886)
387 KOG4077 Cytochrome c oxidase, 59.5 40 0.00088 26.6 6.0 59 200-260 67-125 (149)
388 COG0790 FOG: TPR repeat, SEL1 59.4 1.5E+02 0.0032 27.4 20.8 16 96-111 128-143 (292)
389 PF11846 DUF3366: Domain of un 59.1 38 0.00083 29.2 6.9 37 280-316 139-175 (193)
390 PF11838 ERAP1_C: ERAP1-like C 59.1 1.6E+02 0.0034 27.7 16.2 83 233-315 146-231 (324)
391 KOG0687 26S proteasome regulat 58.4 1.6E+02 0.0036 27.6 11.2 93 219-313 106-209 (393)
392 PF04097 Nic96: Nup93/Nic96; 58.2 2.4E+02 0.0053 29.6 15.9 67 50-117 112-188 (613)
393 KOG1550 Extracellular protein 58.1 2.3E+02 0.005 29.3 22.7 173 66-244 228-424 (552)
394 cd08326 CARD_CASP9 Caspase act 57.4 34 0.00074 24.9 5.2 37 61-97 41-77 (84)
395 PRK10564 maltose regulon perip 56.7 23 0.0005 32.7 5.1 45 79-123 254-299 (303)
396 cd08326 CARD_CASP9 Caspase act 55.6 40 0.00086 24.6 5.3 62 3-69 19-80 (84)
397 KOG4077 Cytochrome c oxidase, 55.5 66 0.0014 25.5 6.6 48 278-325 77-124 (149)
398 PF07064 RIC1: RIC1; InterPro 55.2 1.7E+02 0.0036 26.7 14.8 87 256-348 156-249 (258)
399 PF11663 Toxin_YhaV: Toxin wit 54.9 13 0.00028 29.7 2.7 34 91-126 105-138 (140)
400 PF11663 Toxin_YhaV: Toxin wit 54.8 16 0.00034 29.2 3.2 34 192-227 105-138 (140)
401 KOG4642 Chaperone-dependent E3 54.4 1.2E+02 0.0027 27.1 8.8 9 397-405 248-256 (284)
402 PF13762 MNE1: Mitochondrial s 54.2 1.2E+02 0.0026 24.8 10.5 50 181-230 78-128 (145)
403 PF11846 DUF3366: Domain of un 53.8 35 0.00077 29.4 5.8 32 248-279 139-170 (193)
404 PRK13342 recombination factor 53.5 2.3E+02 0.0051 27.9 15.9 48 83-130 229-279 (413)
405 PF10579 Rapsyn_N: Rapsyn N-te 53.1 32 0.0007 24.6 4.2 45 297-341 18-65 (80)
406 KOG0292 Vesicle coat complex C 53.1 19 0.00042 38.0 4.4 97 195-315 606-702 (1202)
407 KOG0376 Serine-threonine phosp 52.3 10 0.00023 37.1 2.3 94 224-320 11-107 (476)
408 PRK10564 maltose regulon perip 52.2 29 0.00064 32.0 5.0 42 184-225 259-300 (303)
409 KOG4507 Uncharacterized conser 51.8 42 0.00092 34.0 6.3 97 229-328 619-719 (886)
410 PF08424 NRDE-2: NRDE-2, neces 51.7 2.2E+02 0.0047 27.0 15.8 78 97-176 47-127 (321)
411 PF04190 DUF410: Protein of un 51.5 1.9E+02 0.0042 26.4 19.7 157 62-245 2-169 (260)
412 PF14863 Alkyl_sulf_dimr: Alky 51.2 64 0.0014 26.3 6.3 62 269-333 57-118 (141)
413 PF14689 SPOB_a: Sensor_kinase 50.3 39 0.00085 22.9 4.3 30 181-210 22-51 (62)
414 PF06957 COPI_C: Coatomer (COP 49.6 50 0.0011 32.4 6.4 39 280-318 293-333 (422)
415 COG5159 RPN6 26S proteasome re 49.5 2.2E+02 0.0047 26.3 11.3 47 190-236 11-64 (421)
416 PRK11619 lytic murein transgly 49.3 3.5E+02 0.0075 28.6 30.0 224 130-354 255-511 (644)
417 COG5108 RPO41 Mitochondrial DN 48.8 82 0.0018 32.6 7.8 72 222-293 33-111 (1117)
418 KOG2063 Vacuolar assembly/sort 48.7 4E+02 0.0086 29.2 18.4 26 84-109 507-532 (877)
419 KOG2062 26S proteasome regulat 48.5 3.6E+02 0.0078 28.6 12.7 119 191-313 510-634 (929)
420 smart00638 LPD_N Lipoprotein N 48.4 3.3E+02 0.0072 28.2 21.3 29 81-109 340-368 (574)
421 PRK14700 recombination factor 48.3 2.1E+02 0.0045 26.7 9.8 68 80-147 122-197 (300)
422 PF10255 Paf67: RNA polymerase 48.0 1.1E+02 0.0023 30.0 8.3 55 155-209 126-191 (404)
423 PF14689 SPOB_a: Sensor_kinase 47.9 32 0.00069 23.3 3.5 26 84-109 26-51 (62)
424 COG4976 Predicted methyltransf 47.8 30 0.00064 30.6 4.1 56 263-318 5-62 (287)
425 KOG0292 Vesicle coat complex C 47.6 2.8E+02 0.0061 30.0 11.5 131 159-313 651-781 (1202)
426 PF12862 Apc5: Anaphase-promot 47.2 63 0.0014 24.0 5.5 52 296-347 9-69 (94)
427 PF11848 DUF3368: Domain of un 47.1 73 0.0016 20.2 5.2 34 192-225 12-45 (48)
428 COG5108 RPO41 Mitochondrial DN 46.9 1.1E+02 0.0023 31.8 8.2 43 55-97 33-81 (1117)
429 KOG4521 Nuclear pore complex, 46.5 4.7E+02 0.01 29.4 13.2 21 158-178 927-947 (1480)
430 COG4455 ImpE Protein of avirul 46.1 2.1E+02 0.0046 25.3 11.6 59 185-244 4-62 (273)
431 cd08332 CARD_CASP2 Caspase act 45.9 70 0.0015 23.6 5.4 34 62-95 46-79 (90)
432 KOG0686 COP9 signalosome, subu 45.4 3E+02 0.0065 26.9 14.7 61 83-143 152-214 (466)
433 COG0735 Fur Fe2+/Zn2+ uptake r 45.3 1.2E+02 0.0027 24.7 7.3 45 85-129 24-68 (145)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 44.5 1.5E+02 0.0033 23.5 7.6 43 302-344 80-124 (126)
435 PF00244 14-3-3: 14-3-3 protei 44.5 2.4E+02 0.0051 25.4 10.4 58 86-143 6-64 (236)
436 KOG2908 26S proteasome regulat 44.2 2.2E+02 0.0048 27.0 9.2 87 152-238 76-178 (380)
437 PF11848 DUF3368: Domain of un 44.1 83 0.0018 20.0 5.3 32 92-123 13-44 (48)
438 PRK11639 zinc uptake transcrip 42.9 1.1E+02 0.0024 25.8 6.9 39 231-270 39-77 (169)
439 PF11838 ERAP1_C: ERAP1-like C 42.8 2.9E+02 0.0062 25.9 21.0 80 132-211 146-230 (324)
440 PRK13800 putative oxidoreducta 42.4 5.2E+02 0.011 28.7 26.6 255 39-313 625-880 (897)
441 PRK13342 recombination factor 42.3 3.5E+02 0.0076 26.7 15.4 42 185-226 230-274 (413)
442 PF12862 Apc5: Anaphase-promot 42.0 1E+02 0.0023 22.8 6.0 25 290-314 46-70 (94)
443 KOG2297 Predicted translation 41.6 3E+02 0.0065 25.7 11.9 19 219-237 323-341 (412)
444 PF08967 DUF1884: Domain of un 41.5 30 0.00064 24.8 2.6 30 376-405 5-34 (85)
445 PF11768 DUF3312: Protein of u 41.3 2.1E+02 0.0045 29.1 9.2 57 53-109 411-472 (545)
446 KOG0545 Aryl-hydrocarbon recep 41.2 2.2E+02 0.0048 25.7 8.4 86 262-347 187-292 (329)
447 COG0735 Fur Fe2+/Zn2+ uptake r 41.0 1.6E+02 0.0034 24.1 7.3 46 186-231 24-69 (145)
448 cd08323 CARD_APAF1 Caspase act 40.8 1.2E+02 0.0026 22.2 5.8 37 62-98 40-76 (86)
449 PRK11639 zinc uptake transcrip 40.6 1.2E+02 0.0027 25.4 6.9 45 86-130 30-74 (169)
450 KOG0545 Aryl-hydrocarbon recep 40.0 2.9E+02 0.0062 25.0 8.9 89 57-146 185-294 (329)
451 cd08332 CARD_CASP2 Caspase act 39.8 1E+02 0.0022 22.8 5.5 59 4-67 24-82 (90)
452 cd00280 TRFH Telomeric Repeat 39.4 1.2E+02 0.0027 25.8 6.3 19 261-279 119-137 (200)
453 PHA03100 ankyrin repeat protei 39.3 4.1E+02 0.0088 26.6 13.5 209 21-240 35-270 (480)
454 COG2909 MalT ATP-dependent tra 39.1 5.4E+02 0.012 28.0 26.8 215 127-344 426-684 (894)
455 PF10255 Paf67: RNA polymerase 38.9 1.5E+02 0.0032 29.1 7.8 59 85-143 126-191 (404)
456 PF00244 14-3-3: 14-3-3 protei 38.8 2.9E+02 0.0063 24.8 10.4 50 301-350 142-200 (236)
457 PF04090 RNA_pol_I_TF: RNA pol 38.5 2E+02 0.0043 25.0 7.7 63 285-347 41-104 (199)
458 PF11525 CopK: Copper resistan 38.3 14 0.00031 25.3 0.6 21 464-484 8-28 (73)
459 PF14561 TPR_20: Tetratricopep 37.9 1.6E+02 0.0036 21.7 7.8 62 284-345 21-85 (90)
460 smart00777 Mad3_BUB1_I Mad3/BU 37.9 1.7E+02 0.0037 23.3 6.7 42 302-343 80-123 (125)
461 PRK12356 glutaminase; Reviewed 37.6 2.4E+02 0.0053 26.5 8.6 21 13-33 93-113 (319)
462 PF09477 Type_III_YscG: Bacter 37.4 1.9E+02 0.0042 22.3 10.8 79 131-212 21-99 (116)
463 PF07720 TPR_3: Tetratricopept 37.2 90 0.0019 18.4 4.5 19 289-307 5-23 (36)
464 PHA02875 ankyrin repeat protei 37.1 3.3E+02 0.0072 26.6 10.5 200 90-309 8-223 (413)
465 PRK13184 pknD serine/threonine 36.9 6.3E+02 0.014 28.1 21.6 149 196-347 670-832 (932)
466 PF10475 DUF2450: Protein of u 35.8 2.6E+02 0.0057 26.0 8.8 22 181-202 196-217 (291)
467 KOG4567 GTPase-activating prot 35.7 3.8E+02 0.0082 25.2 10.2 72 202-279 263-344 (370)
468 PRK00971 glutaminase; Provisio 35.7 3.8E+02 0.0082 25.2 9.7 20 13-32 88-107 (307)
469 PF01347 Vitellogenin_N: Lipop 35.0 5.5E+02 0.012 26.9 17.6 48 62-109 357-406 (618)
470 KOG0686 COP9 signalosome, subu 35.0 4.4E+02 0.0096 25.8 14.7 59 52-110 152-216 (466)
471 PF09454 Vps23_core: Vps23 cor 34.7 1.3E+02 0.0029 20.6 4.9 49 78-127 5-53 (65)
472 PF02847 MA3: MA3 domain; Int 34.0 1E+02 0.0022 23.6 5.0 22 86-107 7-28 (113)
473 PF04910 Tcf25: Transcriptiona 33.9 4.4E+02 0.0096 25.4 18.4 52 225-279 111-165 (360)
474 cd08323 CARD_APAF1 Caspase act 33.5 1.7E+02 0.0037 21.4 5.7 39 30-69 40-78 (86)
475 cd07153 Fur_like Ferric uptake 33.2 1.1E+02 0.0024 23.6 5.1 47 187-233 5-51 (116)
476 PF12069 DUF3549: Protein of u 33.0 4.4E+02 0.0095 25.1 12.6 135 157-293 172-306 (340)
477 KOG2300 Uncharacterized conser 32.6 5.3E+02 0.012 26.0 19.3 145 66-210 298-473 (629)
478 PF05119 Terminase_4: Phage te 32.5 2.1E+02 0.0045 21.3 7.3 34 372-405 57-90 (100)
479 PF15469 Sec5: Exocyst complex 32.4 3.1E+02 0.0068 23.2 11.1 22 223-244 92-113 (182)
480 PRK10941 hypothetical protein; 32.4 3.7E+02 0.008 24.7 9.0 23 188-210 187-209 (269)
481 PF04034 DUF367: Domain of unk 32.2 2.6E+02 0.0056 22.2 7.3 56 253-308 66-122 (127)
482 PF07575 Nucleopor_Nup85: Nup8 31.7 2.3E+02 0.005 29.4 8.5 19 17-35 326-344 (566)
483 KOG3824 Huntingtin interacting 31.3 82 0.0018 29.2 4.4 15 449-463 419-433 (472)
484 KOG0890 Protein kinase of the 31.1 1.1E+03 0.024 29.2 22.6 116 21-140 1423-1542(2382)
485 KOG0403 Neoplastic transformat 31.1 5.4E+02 0.012 25.6 16.9 102 288-397 512-617 (645)
486 cd08789 CARD_IPS-1_RIG-I Caspa 30.9 1.7E+02 0.0036 21.3 5.3 38 30-69 44-81 (84)
487 TIGR02270 conserved hypothetic 30.9 5.3E+02 0.012 25.5 24.5 235 24-280 44-279 (410)
488 cd07153 Fur_like Ferric uptake 30.5 1.3E+02 0.0028 23.2 5.1 46 87-132 6-51 (116)
489 PF08311 Mad3_BUB1_I: Mad3/BUB 30.4 2.8E+02 0.006 22.0 8.5 43 134-176 81-124 (126)
490 KOG3364 Membrane protein invol 30.3 3E+02 0.0065 22.3 7.2 32 289-320 75-106 (149)
491 TIGR02270 conserved hypothetic 29.8 5.6E+02 0.012 25.3 25.6 24 376-404 336-359 (410)
492 COG4976 Predicted methyltransf 29.7 91 0.002 27.7 4.2 55 295-349 5-59 (287)
493 KOG3824 Huntingtin interacting 29.4 1E+02 0.0022 28.6 4.7 58 264-321 127-186 (472)
494 KOG2223 Uncharacterized conser 29.4 4.7E+02 0.01 25.8 9.1 54 4-57 460-513 (586)
495 KOG2422 Uncharacterized conser 29.2 6.5E+02 0.014 26.0 14.6 77 88-164 349-429 (665)
496 cd00280 TRFH Telomeric Repeat 29.1 3.7E+02 0.0081 23.1 7.9 28 291-319 117-144 (200)
497 PF01475 FUR: Ferric uptake re 28.8 1E+02 0.0022 24.0 4.3 48 186-233 11-58 (120)
498 TIGR03581 EF_0839 conserved hy 28.7 2.6E+02 0.0057 24.6 6.7 79 268-346 136-235 (236)
499 KOG1524 WD40 repeat-containing 28.6 3.5E+02 0.0076 27.4 8.3 60 252-314 572-631 (737)
500 PF02607 B12-binding_2: B12 bi 28.2 1.1E+02 0.0024 21.5 4.1 40 91-130 11-50 (79)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-109 Score=867.75 Aligned_cols=486 Identities=38% Similarity=0.671 Sum_probs=471.5
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHH---------------------
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY--------------------- 60 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~--------------------- 60 (488)
|+++|..|++.|+.||..++|.|+++|+++|++++|.++|++|++++ .++||++|.+|
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 220 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN-LASWGTIIGGLVDAGNYREAFALFREMWEDGS 220 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999999876 77777777666
Q ss_pred -------------------------------------------------HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 036287 61 -------------------------------------------------VEHGLVENAFEVFSRVKVKDTVCWTAMIDGL 91 (488)
Q Consensus 61 -------------------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 91 (488)
+++|++++|.++|+.|+++|+++||+||.+|
T Consensus 221 ~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y 300 (697)
T PLN03081 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300 (697)
T ss_pred CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHH
Confidence 5566666666677777778999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
+++|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|++||..++++|+++|+++|++++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 172 QVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|
T Consensus 381 ~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998789999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
+..+|++|+++|++.|++++|.+++++|++.|+..+|++|+.+|..+|+++.|..+++++.+.+|.+..+|..|+++|++
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccccchh
Q 036287 332 SGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDW 411 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~ 411 (488)
.|+|++|.+++++|+++|+++.|++||+++++.+|.|++||.+||+.++++++++++..+|++.||.||+..++|+++++
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~ 620 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED 620 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhchHHHHHHHhhcCCCCCCcEEEEccccccCCcchhhHHHhhhcCceEEEecCCcccccccCccCCCCCC
Q 036287 412 EKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488 (488)
Q Consensus 412 ~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~csc~~~w 488 (488)
+|+..+.+||||||+||||+++|||+||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 621 ~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 621 EEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-103 Score=839.05 Aligned_cols=481 Identities=40% Similarity=0.752 Sum_probs=463.6
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHH---------------------
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY--------------------- 60 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~--------------------- 60 (488)
|+++|+.|++.|+.||..+||+|+.+|+++|++++|.++|++|..++ .++||++|.+|
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD-AVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999999877 78888888777
Q ss_pred -------------------------------------------------HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 036287 61 -------------------------------------------------VEHGLVENAFEVFSRVKVKDTVCWTAMIDGL 91 (488)
Q Consensus 61 -------------------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 91 (488)
+++|++++|.++|++|.++|+++||+||.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 5666677777777777778888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
.++|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.++..++++|+++|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 172 QVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|
T Consensus 545 ~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 545 NQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999997789999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++.+++|+++..|..|.++|+.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccccchh
Q 036287 332 SGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDW 411 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~ 411 (488)
.|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||+.++||+.|+++..+|++.||.||+..+++ .+++
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~-~~~~ 782 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD-EIEV 782 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcc-ccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998884 4778
Q ss_pred hhhhhhhhchHHHHHHHhhcCCCCCCcEEEEccccccCCcchhhHHHhhhcCceEEEecCCcccccccCccCCCC
Q 036287 412 EKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGD 486 (488)
Q Consensus 412 ~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~csc~~ 486 (488)
+|+..+.+||||||+||||+++|+|+||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|
T Consensus 783 ~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 783 SKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-59 Score=499.75 Aligned_cols=454 Identities=22% Similarity=0.334 Sum_probs=391.6
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHH---------------------
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY--------------------- 60 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~--------------------- 60 (488)
|+++|+++++.|..++..++|+|+.+|+++|+++.|.++|++|++++ +++||++|.+|
T Consensus 105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d-~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD-LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCC-eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 67889999988888888888888888888888888888888888766 66776666666
Q ss_pred -------------------------------------------------HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 036287 61 -------------------------------------------------VEHGLVENAFEVFSRVKVKDTVCWTAMIDGL 91 (488)
Q Consensus 61 -------------------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 91 (488)
+++|++++|.++|++|+.||+++||+||.+|
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~ 263 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 5566677777777777788999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
++.|++++|+++|.+|.+.|+.||..||++++.+|++.|+++.|.++|..+.+.|+.||..+|++|+++|+++|++++|.
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 172 QVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++|++|.++|+++||+||.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+. |+.|
T Consensus 344 ~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~ 422 (857)
T PLN03077 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLIS 422 (857)
T ss_pred HHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975 9999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
+..+|+.||++|+++|++++|.++|++|. +||..+|++++.+|.+.|+.++|..+|++|.+..+||..+|..++.+|++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999999996 46899999999999999999999999999987667788999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCccCCceeEEEECCE----------------------EEEEEeCCCCCccHHHHHHHHHHHH
Q 036287 332 SGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNE----------------------IHEFILGDIRHPQREQIYKKMQELK 389 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~l~ 389 (488)
.|..+.+.+++..|.+.|+.++......+++.. ....+.|+..|++.+++.+ ++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~----lf 577 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE----LF 577 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHH----HH
Confidence 999999999988888888876654332211100 0012345566777777775 88
Q ss_pred HHHHHcCccCCCcccccccchhhhhhhh---hhchHHHHHHHhhcCCCCCCcEEEEccccccCCcchhhHHHhhhcC
Q 036287 390 QIVKLEGYSPSTEVVLHDIEDWEKEWAL---AIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITK 463 (488)
Q Consensus 390 ~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~e~la~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~ 463 (488)
++|.+.|+.||..|+..-+..+.+.+.+ ....+.+-..+|+.++..+.. ++++.+.++|+..+|.++|.+|+.
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~ 653 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPI 653 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCC
Confidence 9999999999999986666555443332 222333444677665554444 689999999999999999999864
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-58 Score=479.71 Aligned_cols=462 Identities=22% Similarity=0.304 Sum_probs=399.3
Q ss_pred HhHHHHHHHHhC-CCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC---CceeeHHHHHHHHHHcCCHHHHHHHHhhcC
Q 036287 2 GREIHGQVLKLG-LRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC---NDVVASTVMINCYVEHGLVENAFEVFSRVK 77 (488)
Q Consensus 2 ~~~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 77 (488)
|.+++..|...+ +.||..+|++++.+|++.++++.|.+++..|... +++.+||.++.+|+++|++++|.++|++|+
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 185 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence 567889998765 7899999999999999999999999999998763 369999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHH
Q 036287 78 VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGAL 157 (488)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 157 (488)
.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.+++..+.+.|+.+|..++++|
T Consensus 186 ~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-C
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR-S 316 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p 316 (488)
+++..|.+. |+.||..+|+.|+++|+++|++++|.++|++|. +||..+|++|+.+|.++|+.++|.++|++|.+.+ .
T Consensus 346 ~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 346 QAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999975 999999999999999999999999999999996 5799999999999999999999999999999876 6
Q ss_pred CCchhHHHHHHHHhcCCChHHHHHHHHHHHh-CCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHc
Q 036287 317 ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE-AGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLE 395 (488)
Q Consensus 317 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~ 395 (488)
||..||..++.+|.+.|+.++|.++|+.|.+ .|+.|+....... +.+....++.+++++ +++ +.
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l--------i~~l~r~G~~~eA~~----~~~---~~ 488 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM--------IELLGREGLLDEAYA----MIR---RA 488 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH--------HHHHHhcCCHHHHHH----HHH---HC
Confidence 6789999999999999999999999999986 5888876544332 234445677777765 333 45
Q ss_pred CccCCCcccccccchhhhhhhhhhchHHH-HHHHhhcCCCCCCcEEEEccccccCCcchhhHHHhhhcCceEEE------
Q 036287 396 GYSPSTEVVLHDIEDWEKEWALAIHSERL-AICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIV------ 468 (488)
Q Consensus 396 g~~pd~~~~~~~~~~~~~~~~~~~~~e~l-a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~i~~------ 468 (488)
+..||..++..-+..+.+.+.+.. .++. ...+++.+...++.+.+++.+..+|+..+|.+++..|..+.+-.
T Consensus 489 ~~~p~~~~~~~Ll~a~~~~g~~~~-a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 489 PFKPTVNMWAALLTACRIHKNLEL-GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcHH-HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 788988764433333322221110 1111 11234433334556667888999999999999999998886532
Q ss_pred -ecCCcccccccCc
Q 036287 469 -RDRNRFHHFENGT 481 (488)
Q Consensus 469 -~d~~~~h~~~~g~ 481 (488)
.-.+..|.|-.|-
T Consensus 568 i~~~~~~~~f~~~d 581 (697)
T PLN03081 568 IEVKKQDHSFFSGD 581 (697)
T ss_pred EEECCeEEEEccCC
Confidence 2234567775553
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9e-57 Score=473.04 Aligned_cols=444 Identities=20% Similarity=0.312 Sum_probs=377.7
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHhhCCCC---CceeeHHHHHHHHHHcCCHHHHHHHHhhcC----CCCHHHHHHHH
Q 036287 16 SNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC---NDVVASTVMINCYVEHGLVENAFEVFSRVK----VKDTVCWTAMI 88 (488)
Q Consensus 16 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li 88 (488)
||..+|+.|+.+|++.|+++.|.++|+.|.+. +|..+|++||.+|+++|++++|.++|++|. .||..+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 78999999999999999999999999999874 368999999999999999999999999998 68999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH--cCCCCcHhHHHHHHHHHHhcCC
Q 036287 89 DGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGK--HRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~ 166 (488)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|..|.+ .|+.||..+|++|+++|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999986 6789999999999999999999
Q ss_pred HHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHh
Q 036287 167 IDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQS 242 (488)
Q Consensus 167 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 242 (488)
+++|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999986 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-CCC
Q 036287 243 MTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR-SAD 318 (488)
Q Consensus 243 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~ 318 (488)
|.+. |+.|+..+|+.||++|+++|++++|.++|++| ++.||..+|++|+.+|++.|++++|.+++++|.+.+ .||
T Consensus 675 M~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 ARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 9975 99999999999999999999999999999999 689999999999999999999999999999999876 667
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCCceeEEEEC-------------CEEEEEEeCCCC--CccHHHHHH
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVN-------------NEIHEFILGDIR--HPQREQIYK 383 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~-------------~~~~~~~~~~~~--~~~~~~~~~ 383 (488)
..+|..|+.+|.+.|++++|.+++++|.+.|+.|+.......++ ..+..|-.|... .....+
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~--- 830 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW--- 830 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH---
Confidence 89999999999999999999999999999999998754433221 011111111100 111223
Q ss_pred HHHHHHHHHHHcCccCCCcccccccchhhhhhhhhhchHHHHHHHhhcCCCCCCc--EEEEccccccCCcchhhHHHhhh
Q 036287 384 KMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTT--IRVVKNLRVCNDCHSMIKLIANI 461 (488)
Q Consensus 384 ~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~--~~~~~n~~~~~~~~~~~~~~s~~ 461 (488)
.-.++++|.+.|+.||..++...+....+... ....+.+-..+++.+.+++.. ..+++.+.. .-++|..++..|
T Consensus 831 -Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em 906 (1060)
T PLN03218 831 -ALMVYRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEA 906 (1060)
T ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHH
Confidence 33589999999999999887555422112111 122333444566666655432 234554421 125799999988
Q ss_pred cCceEE
Q 036287 462 TKRKII 467 (488)
Q Consensus 462 ~~~~i~ 467 (488)
..+.|+
T Consensus 907 ~~~Gi~ 912 (1060)
T PLN03218 907 ASLGVV 912 (1060)
T ss_pred HHcCCC
Confidence 877554
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.8e-54 Score=451.30 Aligned_cols=419 Identities=18% Similarity=0.281 Sum_probs=361.8
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC---CceeeHHHHHHHHHHcCCHHHHHHHHhhcC-
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC---NDVVASTVMINCYVEHGLVENAFEVFSRVK- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~- 77 (488)
|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|.+. +|..+|++||.+|++.|++++|.++|+.|.
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999863 359999999999999999999999999996
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh
Q 036287 78 ---VKDTVCWTAMIDGLVRNGEMARALDLFREMQR--DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI 152 (488)
Q Consensus 78 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 152 (488)
.||..+||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 68999999999999999999999999999986 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 228 (488)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999985 7999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCChhHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGE 305 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~ 305 (488)
+.|++++|.++|+.|.+. ++.||..+|+.||.+|++.|++++|.++|++| ++.||..+|++++.+|.+.|+++.|.
T Consensus 696 k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred hCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999864 99999999999999999999999999999998 79999999999999999999999999
Q ss_pred HHHHHHHhcC-CCCchhHHHHHHHHhc----C-------------------CChHHHHHHHHHHHhCCCccCCceeEEEE
Q 036287 306 QIAKRLLDCR-SADSGTYVLLSNAYAS----S-------------------GKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361 (488)
Q Consensus 306 ~~~~~~~~~~-p~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 361 (488)
+++++|.+.+ .+|..+|..|+.+|.+ + +..++|..+|++|.+.|+.|+..+....+
T Consensus 775 ~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 775 DLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 9999999976 5677899999876532 2 12367999999999999999866544333
Q ss_pred CCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccccchhh--hhhhhhhchHHHHHHHhhcCCCC
Q 036287 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWE--KEWALAIHSERLAICYGLISTKP 435 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~--~~~~~~~~~e~la~~~~~~~~~~ 435 (488)
... . .... ......+++.|...+..|+..++..-++... .+..+..+.| +...|+.+.-.
T Consensus 855 ~cl----~----~~~~----~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~e--m~~~Gi~p~~~ 916 (1060)
T PLN03218 855 GCL----Q----LPHD----ATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEE--AASLGVVPSVS 916 (1060)
T ss_pred HHh----c----cccc----HHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHH--HHHcCCCCCcc
Confidence 211 0 1111 2233456666766677776665432222211 1123333332 44566665553
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.98 E-value=6.7e-33 Score=215.81 Aligned_cols=106 Identities=64% Similarity=1.020 Sum_probs=96.5
Q ss_pred ceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccccchhhh--------hhhhhhchHHHHH
Q 036287 355 GCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEK--------EWALAIHSERLAI 426 (488)
Q Consensus 355 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 426 (488)
+++|+.+ |.|++||.+||+. ++..++...||.|++..++|+++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6788866 9999999999998 366778889999999999998877655 5688999999999
Q ss_pred HHhhcCCCCCCcEEEEccc-cccCCcchhhHHHhhhcCceEEEecCCcccccc
Q 036287 427 CYGLISTKPYTTIRVVKNL-RVCNDCHSMIKLIANITKRKIIVRDRNRFHHFE 478 (488)
Q Consensus 427 ~~~~~~~~~~~~~~~~~n~-~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~ 478 (488)
|||++++ ||+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 899999 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=2.3e-22 Score=218.51 Aligned_cols=341 Identities=11% Similarity=0.131 Sum_probs=271.3
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
+.+++..+++.+ +.+..++..+...|.+.|+.++|...|+++.. +++...+..++..|.+.|++++|..+++.+.
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 456777777655 45677888888999999999999999888754 3356678888888999999999999988875
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 -VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.+..+|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3467788889999999999999999999888754 4466777888888888899999999998888764 456778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
++..+...|++++|.++++.+.+ .+...+..+...+...|++++|+..|+++... .|+..++..+..++...|+.
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 88888888999999888888765 35667788888888888888888888888875 45556777788888888888
Q ss_pred HHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
++|.+.+..+.+ ..+.+...+..+...|.+.|++++|.+.|+++ .. +++..++..+...+...|+ ++|...++++
T Consensus 753 ~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 888888888875 33455777888888888888888888888887 33 3457778888888888888 7788888888
Q ss_pred HhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 312 LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 312 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.+..|.++..+..++.+|...|++++|.+.++++.+.+.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888888888888888888888888877654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=4.5e-22 Score=216.17 Aligned_cols=339 Identities=13% Similarity=0.088 Sum_probs=294.3
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
|.+.+..+++.. +.+...+..+...|.+.|++++|.+.|+.+.. +++..++..+...+.+.|+.++|..+|+++.
T Consensus 484 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777654 44566788899999999999999999998865 3457889999999999999999999999874
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 -VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.+...+..++..|.+.|++++|+.+++++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 3456788899999999999999999999998763 5678899999999999999999999999998875 456778889
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+..+|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 99999999999999999998764 457899999999999999999999999998874 55667788888899999999
Q ss_pred HHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
++|.+.|..+.. ..|+..++..+..++.+.|++++|.+.++++ ..+.+..++..+...|...|+.++|...++++
T Consensus 720 ~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999999884 3566678888999999999999999999888 33346788888999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 312 LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 312 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++..|+++.++..++.+|...|+ .+|...++++.+.
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 99999999999999999999999 8899999988765
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=7.3e-21 Score=186.60 Aligned_cols=294 Identities=13% Similarity=0.156 Sum_probs=222.1
Q ss_pred HHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 036287 57 INCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN---EVTIVCVLSACSQLG 130 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~ 130 (488)
...+...|++++|...|+++. +.+..+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344566677777777777765 22445677777788888888888888887776432221 245666777777888
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC--------HHHHHHHHHHHHhcCChhHHH
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD--------VTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~ 202 (488)
+++.|..++..+.+.. +.+..++..++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888877653 4456677778888888888888888888776421 123556777788888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC--hhhHHHHHHHHHhcCChHHHHHHHHhC-
Q 036287 203 EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ--IEHYGCIVDLLSRVGRPEEAYDFITNM- 279 (488)
Q Consensus 203 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m- 279 (488)
..|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+. .|+ ..+++.++.+|.+.|++++|.+.++++
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888753 233456667778888889999999999888743 333 456788899999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc---CCChHHHHHHHHHHHhCCCccCCce
Q 036287 280 KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS---SGKWKEAVQIRAKMKEAGVQKEPGC 356 (488)
Q Consensus 280 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~ 356 (488)
...|+...+..+...+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.+
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 5667777778889999999999999999999999988774 66666666553 5689999999999999999998873
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.1e-20 Score=185.45 Aligned_cols=286 Identities=16% Similarity=0.128 Sum_probs=241.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC--CceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC-C------HHHHHHHHHHHHHc
Q 036287 24 LVELYGKCGEFKDAMQLFDEMPEC--NDVVASTVMINCYVEHGLVENAFEVFSRVKVK-D------TVCWTAMIDGLVRN 94 (488)
Q Consensus 24 li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~ 94 (488)
+...+...|++++|...|.++.+. ++..+|..+...+...|++++|..+++.+... + ...|..++..|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567889999999999999774 34668899999999999999999999987632 1 24688999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN----HIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A 170 (488)
|++++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...|.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998763 45778899999999999999999999999988764332 22456678889999999999
Q ss_pred HHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc
Q 036287 171 LQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY 247 (488)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 247 (488)
.+.|+++.+ .+...+..+...|.+.|++++|.++|+++.+.+......++..+..+|...|++++|.+.++.+.+
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 277 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-- 277 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 999999864 345688889999999999999999999999854333345678889999999999999999999885
Q ss_pred CcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---hCChhHHHHHHHHHHh
Q 036287 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKI---HGKLQLGEQIAKRLLD 313 (488)
Q Consensus 248 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 313 (488)
..|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+
T Consensus 278 -~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 -EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 3677777789999999999999999999877 677999999988887765 5688899999998886
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=7e-18 Score=174.16 Aligned_cols=319 Identities=12% Similarity=0.033 Sum_probs=243.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 97 (488)
..+....+.|++++|..+++.... +++...+..++.+....|++++|...|+++. +.+...|..+...+.+.|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 345566778999999888887655 3346677777788888999999999998875 33567788888888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
++|+..|+++.+.. +.+...+..+..++...|++++|...+..+...... +...+..+. .+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 99999999888753 345667777888888899999999988887766433 333333333 477889999999888886
Q ss_pred ccC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHhcccccCc
Q 036287 178 KER----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL----GFEIFQSMTRDYGI 249 (488)
Q Consensus 178 ~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~ 249 (488)
.+. +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++ |...|+.+.+ +
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l 279 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---F 279 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---h
Confidence 543 23344555677888899999999999888753 3345566677788888888875 7888888874 3
Q ss_pred ccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 250 EPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 250 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
.|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+..|.++..+..++
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 444 667888888899999999999888887 44554 566777888888899999999999999888888766666677
Q ss_pred HHHhcCCChHHHHHHHHHHHhC
Q 036287 327 NAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.++...|++++|...+++..+.
T Consensus 360 ~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888899999999998887654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=9.3e-18 Score=173.57 Aligned_cols=340 Identities=11% Similarity=0.044 Sum_probs=256.0
Q ss_pred hHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---
Q 036287 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK--- 77 (488)
Q Consensus 3 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--- 77 (488)
...+...++ +.|+...|..+...|.+.|++++|++.++...+ +++..+|..+..+|...|++++|+..|....
T Consensus 147 i~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~ 224 (615)
T TIGR00990 147 IKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIID 224 (615)
T ss_pred HHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345555554 567778888888999999999999999888765 3356788888899999999999876554321
Q ss_pred ------------------------------CCCHHHHHHHHHH--------------------------H----------
Q 036287 78 ------------------------------VKDTVCWTAMIDG--------------------------L---------- 91 (488)
Q Consensus 78 ------------------------------~~~~~~~~~li~~--------------------------~---------- 91 (488)
.++..++..+... +
T Consensus 225 ~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~ 304 (615)
T TIGR00990 225 GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPES 304 (615)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHh
Confidence 0011111111000 0
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 036287 92 VRNGEMARALDLFREMQRDN-VRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 169 (488)
...+++++|++.|++....+ ..| +...+..+...+...|++++|...++..++.. +.....+..+..+|...|++++
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 11256888999998888754 233 34567777778888999999999999998864 3346678888899999999999
Q ss_pred HHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccc
Q 036287 170 ALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRD 246 (488)
Q Consensus 170 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 246 (488)
|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+...+.
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999988764 457789999999999999999999999998852 334556667778888999999999999998752
Q ss_pred cCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 247 YGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDH-I-------MLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 247 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
.+.+...++.+..+|...|++++|++.|++. ...|+. . .++..+..+...|++++|...++++++.+|.
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2334778888999999999999999999886 444421 1 1222223334468999999999999999998
Q ss_pred CchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 318 DSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 318 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+..++..++.+|...|++++|.+.|++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988653
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1e-18 Score=165.42 Aligned_cols=323 Identities=17% Similarity=0.204 Sum_probs=269.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC------------------
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK------------------ 77 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~------------------ 77 (488)
..+|..+.+.+-..|++++|..+++.+.+ ++.+..|..+..++...|+.+.|...|.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 45677888888899999999999998776 3357788888888888888777777766542
Q ss_pred ------------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHH
Q 036287 78 ------------------VKD-TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQLGALELGRW 137 (488)
Q Consensus 78 ------------------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 137 (488)
+|. .++|+.|...+-.+|+...|++.|++..+. .|+ ...|..+...|...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 121 345777777778888888888888888774 454 4677888888888888888888
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036287 138 IHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR 214 (488)
Q Consensus 138 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 214 (488)
.+....... +....++..|...|-..|.+|.|...+++..+ | -..+|+.|..++-..|+..+|.+.|.+.... .
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~ 350 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--C 350 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--C
Confidence 888776653 34466777788888899999999999998775 3 3478999999999999999999999999884 4
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 036287 215 PT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGS 290 (488)
Q Consensus 215 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 290 (488)
|+ ....+.|..++...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|+..+++. .++|+ ...++.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 44 4678889999999999999999999887 45666 677899999999999999999999988 88998 688999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...|...|+.+.|.+.+.+++..+|.-..++..|...|-.+|+..+|+.-+++..+.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999988764
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5.1e-17 Score=167.76 Aligned_cols=328 Identities=13% Similarity=0.064 Sum_probs=256.6
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
+..+....+.....+ ......|+......|++++|...|+++.. +++...|..+...+.+.|++++|...|++..
T Consensus 61 A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 61 GLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred hHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555554333 33444555666779999999999999876 4567889999999999999999999999875
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 -VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.+...|..+...+...|++++|+..++++..... .+...+.. +..+...|++++|...+..+.+....++......
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 34677899999999999999999999998877542 23333333 3457889999999999999887754444555566
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIE----AVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
+...+.+.|++++|...|++..+ .+...+..+...|...|++++ |+..|++..+.. +.+...+..+...+..
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 67889999999999999998765 467788899999999999986 899999999852 3345677888899999
Q ss_pred cCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHhCChhHHHH
Q 036287 230 GGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIM-LGSLLSACKIHGKLQLGEQ 306 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~ 306 (488)
.|++++|...++...+ ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+... +..+..++...|+.++|..
T Consensus 297 ~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 297 TGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999885 3454 566778899999999999999999988 45666444 4445677899999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 307 IAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 307 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.++++++..|.+. ...+++|...+.+..+.
T Consensus 374 ~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 374 VFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 9999999988763 23445565555555443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=1.5e-17 Score=157.59 Aligned_cols=299 Identities=15% Similarity=0.143 Sum_probs=255.9
Q ss_pred cCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 036287 31 CGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKD---TVCWTAMIDGLVRNGEMARALDLFR 105 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 105 (488)
.|++++|...+-+..+ +.-.++|+.|.-.+...|++..|+.-|++...-| ..+|-.|...|...+.+++|+..|.
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 4555555555444332 2256789999999999999999999999876433 5689999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CC
Q 036287 106 EMQRDNVRPN-EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RD 181 (488)
Q Consensus 106 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 181 (488)
+.... .|+ .+.+..+...|...|.++.|+..+++.++.. +.-...|+.|..+.-..|++.+|...+++... .-
T Consensus 277 rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 277 RALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred HHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 98875 454 5778888888999999999999999999875 34477899999999999999999999999775 34
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCI 259 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 259 (488)
..+.+.|...|...|..++|..+|....+ +.|. ...++.|...|-+.|++++|...++... .|+|+ ...|+.+
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~Nm 428 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNM 428 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhc
Confidence 57889999999999999999999999988 5555 4568889999999999999999999988 78898 6899999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHH
Q 036287 260 VDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKE 337 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 337 (488)
...|...|+.+.|.+.+.+. .+.|. ....+.|.+.+...|++.+|+..++..++++|+-+.+|-.++.+.---.+|.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999887 78887 67889999999999999999999999999999999999988877665556655
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=1.9e-16 Score=174.35 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=126.4
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHH----------
Q 036287 158 INMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGV---------- 223 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l---------- 223 (488)
...|...|++++|.+.|++..+ | +...+..+...|.+.|++++|...|+++.+. .|+ ...+..+
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCH
Confidence 3445556777777777766553 2 3445556666677777777777777766653 222 2222222
Q ss_pred ----------------------------------HHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCCh
Q 036287 224 ----------------------------------LNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRP 269 (488)
Q Consensus 224 ----------------------------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 269 (488)
...+...|+.++|..+++. .+++...+..+...|.+.|++
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCH
Confidence 2334444555555555441 133455667788888888999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 270 EEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 270 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++|++.|++. ...| +...+..+...+...|+.++|+..++.+.+..|+++..+..+..++...|++++|.++++.+.+
T Consensus 620 ~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 620 AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999888887 4455 4778888888888899999999999988888888888888888888899999999999998876
Q ss_pred CC
Q 036287 348 AG 349 (488)
Q Consensus 348 ~g 349 (488)
..
T Consensus 700 ~~ 701 (1157)
T PRK11447 700 QA 701 (1157)
T ss_pred hC
Confidence 53
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=8e-16 Score=169.53 Aligned_cols=339 Identities=12% Similarity=0.075 Sum_probs=258.3
Q ss_pred hHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC
Q 036287 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKD 80 (488)
Q Consensus 3 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 80 (488)
.+.+..+++.. +.+...+..|...|.+.|++++|++.|++... +++...+..+...|. .++.++|..+++.++...
T Consensus 371 ~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 371 ERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ 448 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH
Confidence 44555555543 33555677788888888888888888888765 334556666666664 457788888887765321
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC
Q 036287 81 ------------TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID 148 (488)
Q Consensus 81 ------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 148 (488)
...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|...++.+++.. +
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P 526 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-P 526 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 1234556777888999999999999998864 3356677788889999999999999999998764 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC----CH---------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKER----DV---------TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
.+...+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|+.+++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 45555556666778899999999999987642 11 1123456678899999999999882 345
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036287 216 TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLS 293 (488)
Q Consensus 216 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 293 (488)
+...+..+...+...|+.++|...|+.+.+. -+.+...+..++..|...|++++|.+.++.. ...|+ ...+..+..
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 5566777888899999999999999999853 2334788899999999999999999999987 44554 667777888
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCCCc------hhHHHHHHHHhcCCChHHHHHHHHHHHh-CCCcc
Q 036287 294 ACKIHGKLQLGEQIAKRLLDCRSADS------GTYVLLSNAYASSGKWKEAVQIRAKMKE-AGVQK 352 (488)
Q Consensus 294 ~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~ 352 (488)
++...|++++|.++++++++..|+++ ..+..+...+...|++++|.+.++.... .|+.|
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 89999999999999999998765443 3566678999999999999999998754 35543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=1.8e-15 Score=159.55 Aligned_cols=342 Identities=7% Similarity=-0.013 Sum_probs=251.2
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---C
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---V 78 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~ 78 (488)
+++....... +.+...+..+...+.+.|++++|..+|++..+ +++...+..++..+...|++++|...+++.. +
T Consensus 36 ~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P 114 (765)
T PRK10049 36 TVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP 114 (765)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4455554422 34455688899999999999999999998654 3456778888899999999999999998875 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH------------------------
Q 036287 79 KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALEL------------------------ 134 (488)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~------------------------ 134 (488)
.+.. |..+...+...|++++|+..++++.+.. +.+...+..+..++...+..+.
T Consensus 115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~ 192 (765)
T PRK10049 115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAA 192 (765)
T ss_pred CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566 8888899999999999999999998863 2344444455555554454443
Q ss_pred ----------------------HHHHHHHHHHc-CCCCcHh--HHHH---HHHHHHhcCCHHHHHHHHHhcccCC---H-
Q 036287 135 ----------------------GRWIHSYMGKH-RIDLNHI--VGGA---LINMYSRCGDIDKALQVFEEMKERD---V- 182 (488)
Q Consensus 135 ----------------------a~~~~~~~~~~-g~~~~~~--~~~~---li~~y~~~g~~~~A~~~~~~~~~~~---~- 182 (488)
|.+.++.+.+. ...|+.. ...+ .+.++...|++++|++.|+++.+.+ +
T Consensus 193 ~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~ 272 (765)
T PRK10049 193 ELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP 272 (765)
T ss_pred HHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH
Confidence 33344444432 1122211 1111 1223456799999999999988632 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHhcccccC----------c
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP---TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG----------I 249 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~ 249 (488)
..-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.++++.+.+... -
T Consensus 273 ~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 273 WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 122225678999999999999999987643111 123455667788999999999999999875311 0
Q ss_pred ccC---hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 250 EPQ---IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 250 ~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|++++|++.++++++..|++...+..
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 122 234567788899999999999999998 4344 57888999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhC
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++..+...|++++|..+++.+.+.
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999764
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=1.6e-15 Score=156.98 Aligned_cols=324 Identities=12% Similarity=-0.021 Sum_probs=246.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 96 (488)
+..+...|.+.|++++|...|++... .++...|..+..+|.+.|++++|++.++... +.+..+|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 45677889999999999999998765 2347789999999999999999999999865 3356789999999999999
Q ss_pred HHHHHHHHHHHHHCCC----------------------------CC----CHHHHHHHHH--------------------
Q 036287 97 MARALDLFREMQRDNV----------------------------RP----NEVTIVCVLS-------------------- 124 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~----------------------------~p----~~~t~~~ll~-------------------- 124 (488)
+++|+.-|......+- .| ........+.
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 9999876654432210 00 0000000000
Q ss_pred ---HH----------HhcCchHHHHHHHHHHHHcC-C-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHH
Q 036287 125 ---AC----------SQLGALELGRWIHSYMGKHR-I-DLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYN 186 (488)
Q Consensus 125 ---~~----------~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~ 186 (488)
++ ...+.+++|.+.++.+++.+ . +.....++.+...|...|++++|...|++..+ | +..+|.
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 369 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 00 11246778888888888765 2 33456778888889999999999999998765 3 356788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHh
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSR 265 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 265 (488)
.+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+ +.| +...+..+..++.+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHH
Confidence 88888999999999999999988752 33467777888889999999999999999874 344 46777788889999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHH-------HHHHHhcCCChH
Q 036287 266 VGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL-------LSNAYASSGKWK 336 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~ 336 (488)
.|++++|+..+++. ...| +...|+.+...+...|++++|...+++++++.|.+...+.. ....|...|+++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999887 4445 47788888999999999999999999999988765333221 122344468999
Q ss_pred HHHHHHHHHHhC
Q 036287 337 EAVQIRAKMKEA 348 (488)
Q Consensus 337 ~a~~~~~~m~~~ 348 (488)
+|.+++++..+.
T Consensus 526 eA~~~~~kAl~l 537 (615)
T TIGR00990 526 EAENLCEKALII 537 (615)
T ss_pred HHHHHHHHHHhc
Confidence 999999887664
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=1.7e-14 Score=152.14 Aligned_cols=329 Identities=11% Similarity=0.048 Sum_probs=253.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-CC-ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CN-DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGL 91 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 91 (488)
+.....-.+......|+.++|++++..... .+ +...+..+...+...|++++|.++|++.. +.+...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444455567778889999999999999775 22 34459999999999999999999999953 44677888999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++.+.+.. +.+..++..+..++...|..+.|.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999998863 44555 8888889999999999999999999876 445666667777777777777666
Q ss_pred HHHHhccc---------------------------------------------------CCHH-HH----HHHHHHHHhc
Q 036287 172 QVFEEMKE---------------------------------------------------RDVT-TY----NSLIAGLAMH 195 (488)
Q Consensus 172 ~~~~~~~~---------------------------------------------------~~~~-~~----~~li~~~~~~ 195 (488)
+.++.... |+.. .+ ...+.++...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 55553221 1100 00 1112345677
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc--ChhhHHHHHHHHHhcCChHHH
Q 036287 196 GRSIEAVEMFREMINQGIR-PTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP--QIEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 272 (488)
|++++|+..|+++.+.+.+ |+.. ...+..+|...|++++|...|+.+.+.....+ .......|..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8999999999999987532 4332 22256789999999999999999875311111 134566677788999999999
Q ss_pred HHHHHhC-CCCC-------------C---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCCh
Q 036287 273 YDFITNM-KIAP-------------D---HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW 335 (488)
Q Consensus 273 ~~~~~~m-~~~p-------------~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 335 (488)
.++++.+ ...| + ...+..+...+...|+.++|+..++++.+..|.++..+..++.++...|++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 9999988 3223 2 234556777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 036287 336 KEAVQIRAKMKEAG 349 (488)
Q Consensus 336 ~~a~~~~~~m~~~g 349 (488)
++|++.+++..+..
T Consensus 410 ~~A~~~l~~al~l~ 423 (765)
T PRK10049 410 RAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999887743
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=2.4e-13 Score=141.31 Aligned_cols=165 Identities=10% Similarity=0.086 Sum_probs=97.8
Q ss_pred hHHHHHHHHhCCCCch--hhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHH--HHHHHHcCCHHHHHHHHhhcCC
Q 036287 3 REIHGQVLKLGLRSNR--STRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVM--INCYVEHGLVENAFEVFSRVKV 78 (488)
Q Consensus 3 ~~i~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~l--i~~~~~~g~~~~A~~~f~~~~~ 78 (488)
.+.+.++++.. |+. .++ .++..+...|+.++|+..+++...+.+...+..+ ...|...|++++|+++|+++..
T Consensus 54 l~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 54 LDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred HHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445554433 332 233 6777777777777777777777755434444444 4466677777777777777652
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHH
Q 036287 79 ---KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGG 155 (488)
Q Consensus 79 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 155 (488)
.|...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.++.+.+.. +.+...+.
T Consensus 131 ~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~ 207 (822)
T PRK14574 131 KDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLK 207 (822)
T ss_pred hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 24556666677777777777777777777664 3554555333333333455545777777777664 33454555
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 036287 156 ALINMYSRCGDIDKALQV 173 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~ 173 (488)
.++....+.|-...|.++
T Consensus 208 ~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 208 NHLEILQRNRIVEPALRL 225 (822)
T ss_pred HHHHHHHHcCCcHHHHHH
Confidence 555555555544444433
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=2.9e-13 Score=143.50 Aligned_cols=324 Identities=12% Similarity=0.080 Sum_probs=237.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-CC----ceeeHHHHHHHHHHcCC---HHHHHHH----------------
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CN----DVVASTVMINCYVEHGL---VENAFEV---------------- 72 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~----~~~~~~~li~~~~~~g~---~~~A~~~---------------- 72 (488)
+....-.+.-...+.|+.++|.++|..... +. +...-+-++..|.+.+. ..+|..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 444455555566778889999999888766 22 12234466777766655 3333222
Q ss_pred ---------HhhcC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 036287 73 ---------FSRVK---VK--DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWI 138 (488)
Q Consensus 73 ---------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 138 (488)
+.... ++ +...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111 22 56678888877776 7888899988877764 36665544555556788999999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 139 HSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNS---LIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
++.+... +|+...+..+...+.+.|+.++|...|++..+.+...++. +.......|++++|+..|++..+ ..|
T Consensus 532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P 607 (987)
T PRK09782 532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAP 607 (987)
T ss_pred HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCC
Confidence 9887654 3444455667778888999999999998877643332332 23334455999999999999887 456
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036287 216 TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLL 292 (488)
Q Consensus 216 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 292 (488)
+...+..+..++.+.|+.++|...++...+ ..|+ ...++.+...+...|++++|++.+++. ...| +...+..+.
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 777888888889999999999999998884 3454 667778888899999999999998887 5555 477888888
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.++...|++++|+..++++++..|.+..+.........+..+++.+.+-++.-...++
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999998888888888888888888888887776655444
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=6.6e-13 Score=140.84 Aligned_cols=227 Identities=8% Similarity=0.023 Sum_probs=182.3
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHH
Q 036287 115 NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGL 192 (488)
Q Consensus 115 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 192 (488)
+...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 45555656555555 67778888777766553 4444444455556789999999999998764 4455677778888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH
Q 036287 193 AMHGRSIEAVEMFREMINQGIRPTK-VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 271 (488)
.+.|+.++|...|++..+.. |+. ..+..+.......|++++|...++... .+.|+...|..+..++.+.|++++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999998853 433 333344445556799999999999998 446788899999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 272 AYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 272 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
|+..+++. ...|+ ...+..+..++...|+.++|+..++++++..|.++..+..+..+|...|++++|+..+++..+..
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999988 66665 67788888899999999999999999999999999999999999999999999999999987643
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=2.4e-12 Score=134.01 Aligned_cols=323 Identities=12% Similarity=0.095 Sum_probs=246.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCH-HHHHHH--HHHHHHcCCH
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKVKDT-VCWTAM--IDGLVRNGEM 97 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~l--i~~~~~~g~~ 97 (488)
.-+-...+.|+++.|...|++..+.+ +......++..+...|+.++|+..+++...|+. ..+..+ ...|...|++
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 33445568999999999999988754 211234888999999999999999999886643 333334 5688889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
++|+++|+++.+.. +-+...+..++..+...++.++|.+.+..+.+.. |+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999874 4456777788888999999999999999998764 44555555666665567776699888887
Q ss_pred cc--C------------------------------CH-----------------H----------------------HHH
Q 036287 178 KE--R------------------------------DV-----------------T----------------------TYN 186 (488)
Q Consensus 178 ~~--~------------------------------~~-----------------~----------------------~~~ 186 (488)
.+ | +. + -+.
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 53 1 00 0 000
Q ss_pred H---------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 187 S---------------------LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 187 ~---------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
. .+-++...|+..++++.|+.|...|.+-...+-..+.++|...+++++|..++..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 1 1334566778888999999998887654455777899999999999999999999865
Q ss_pred ccC----cccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-------------CC---HHHHHHHHHHHHHhCChhHH
Q 036287 246 DYG----IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-------------PD---HIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 246 ~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-------------p~---~~~~~~ll~~~~~~g~~~~a 304 (488)
..+ ..++......|.-+|...+++++|..+++++ ... || ......++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 422 2334555678899999999999999999988 111 22 22334456677889999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++.++++....|.|......+.+++...|.+.+|++.++.....
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999766543
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=8e-13 Score=131.39 Aligned_cols=322 Identities=13% Similarity=0.147 Sum_probs=255.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhh---cCCCCHHHHHHHHHHHHHcCCH
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSR---VKVKDTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~ 97 (488)
...+.....|++++|.+++.++...+ ....|.+|...|-+.|+.+++...+-. +.+.|..-|-.+.....+.|++
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 33344444599999999999986633 588999999999999999999987654 3466889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH----HHHHHHhcCCHHHHHHH
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA----LINMYSRCGDIDKALQV 173 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~ 173 (488)
++|.-.|.+.++.. +++...+---...|-+.|+...|..-+.++.+...+.|..-... .+..|...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999975 56767777778889999999999999999988764444333333 35567777888999998
Q ss_pred HHhccc--C---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----------------------H----HH
Q 036287 174 FEEMKE--R---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT----------------------F----VG 222 (488)
Q Consensus 174 ~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----------------------~----~~ 222 (488)
++.... . +...++.++..|.+..+++.|......+......+|..- | ..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 887664 2 345688999999999999999999888876222222211 1 12
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccC--cccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHH
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYG--IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKI 297 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~ 297 (488)
+.-++.+....+....+.....+. . ..-++..|.-+.++|...|++.+|+.+|..+ +...+..+|-.+...|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 333444555555555555555542 4 3345788999999999999999999999998 222357899999999999
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.|..++|...+++++...|.+..+-..|...|...|+.++|.+++..+.
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999876
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=8.5e-16 Score=143.17 Aligned_cols=256 Identities=16% Similarity=0.174 Sum_probs=110.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV-CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
.+...+.+.|++++|++++++......+|+...|- .+...+...++.+.|.+.++.+.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667788888899988886654443234444443 4445566788888899888888877633 56667777777 688
Q ss_pred CCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 036287 165 GDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241 (488)
Q Consensus 165 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 241 (488)
+++++|.+++.+.-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999888876643 566678888888999999999999999977543 34566677777888889999999999999
Q ss_pred hcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 242 SMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 242 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
...+ ..|+ ......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...+++..+..|.|
T Consensus 171 ~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9884 3564 777888999999999999988887776 223456788899999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+.+...++.++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999988764
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=4.9e-12 Score=123.45 Aligned_cols=276 Identities=14% Similarity=0.073 Sum_probs=206.9
Q ss_pred HcCCHHHHHHHHhhcCCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCchHHHH
Q 036287 62 EHGLVENAFEVFSRVKVK--D-TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV--CVLSACSQLGALELGR 136 (488)
Q Consensus 62 ~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~ 136 (488)
..|+++.|++.+...+.. + ...|........+.|+++.|...|.++.+. .|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 359999999988876643 2 333433344558899999999999999874 46654333 3356778899999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC---H--------HHHHHHHHHHHhcCChhHHHHHH
Q 036287 137 WIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD---V--------TTYNSLIAGLAMHGRSIEAVEMF 205 (488)
Q Consensus 137 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~ 205 (488)
+.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998887 5577888899999999999999999998887532 1 13333444444445556666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036287 206 REMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD 284 (488)
Q Consensus 206 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 284 (488)
+.+-+. .+.+......+..++...|+.++|.+++....+. .|+.... ++......++.+++.+.+++. +..|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665432 3456777788889999999999999999888742 4554221 233333558999999998887 44554
Q ss_pred -HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 285 -HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 285 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+.....+...|...+++++|...|+.+.+..|++ ..+..|..++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678888999999999999999999999998876 6788999999999999999999987643
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2e-11 Score=119.74 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=40.1
Q ss_pred CChHHHHHHHHhC-CCCCC-H--HHHHHHHHHHHHhCChhHHHHHHHH--HHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 267 GRPEEAYDFITNM-KIAPD-H--IMLGSLLSACKIHGKLQLGEQIAKR--LLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 267 g~~~~A~~~~~~m-~~~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
++.+.+.+.+++. ...|+ + ....++...+.+.|++++|.+.|+. ..+..|++ ..+..++..+.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Confidence 4444455544443 22232 2 3444555556666666666666663 33344433 345566666666666666666
Q ss_pred HHHHH
Q 036287 341 IRAKM 345 (488)
Q Consensus 341 ~~~~m 345 (488)
++++-
T Consensus 392 ~~~~~ 396 (409)
T TIGR00540 392 MRQDS 396 (409)
T ss_pred HHHHH
Confidence 66553
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=2.2e-11 Score=111.53 Aligned_cols=233 Identities=18% Similarity=0.293 Sum_probs=172.6
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcH
Q 036287 72 VFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNH 151 (488)
Q Consensus 72 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 151 (488)
++-+..++...++.+||.+.++--..+.|.++|++-.....+.+..+|+.+|.+-+ +..++++..+|+...+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCch
Confidence 44444455678899999999999999999999999988778899999999987754 33448889999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH----Hhcc----cCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHc----CCCC---
Q 036287 152 IVGGALINMYSRCGDIDKALQVF----EEMK----ERDVTTYNSLIAGLAMHGRSIE-AVEMFREMINQ----GIRP--- 215 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~----g~~p--- 215 (488)
.++|+++.+.++.|+++.|++.+ .+|+ +|...+|..+|..+.+.++..+ |..++.+.+.. .++|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999999988876554 4454 3788899999999998888755 44455555432 2222
Q ss_pred -CHHHHHHHHHHHhccCCHHHHHHHHHhcccc--cC-cccC---hhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCH
Q 036287 216 -TKVTFVGVLNACSHGGLVDLGFEIFQSMTRD--YG-IEPQ---IEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDH 285 (488)
Q Consensus 216 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~-~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~ 285 (488)
|...|...+..|.+..+.+.|.++..-.... +. +.|+ ..-|..+.++.++...++.-...++.| -.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 4556778889999999999998887666531 11 2333 234667778888888888888888888 244677
Q ss_pred HHHHHHHHHHHHhCChhHHHHHH
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~ 308 (488)
.+...++++....+.++..-+++
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw 456 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIW 456 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHH
Confidence 77777777776666655444443
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=2.1e-11 Score=119.08 Aligned_cols=278 Identities=11% Similarity=0.013 Sum_probs=218.0
Q ss_pred cCChHHHHHHHhhCCCCC-ceeeHHHH-HHHHHHcCCHHHHHHHHhhcCC--CCHHHHH--HHHHHHHHcCCHHHHHHHH
Q 036287 31 CGEFKDAMQLFDEMPECN-DVVASTVM-INCYVEHGLVENAFEVFSRVKV--KDTVCWT--AMIDGLVRNGEMARALDLF 104 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~~~-~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 104 (488)
.|+++.|++.+...++.. ++..+..+ .....+.|+++.|...|.++.+ |+..... .....+...|++++|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 699999999998876642 22333333 3444899999999999999863 3332222 3367889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh-------HHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 105 REMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI-------VGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 105 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
+++.+.. +-+......+...+.+.|+++.+..++..+.+.+..++.. ++..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998875 4467788888999999999999999999999987543332 3334444445556677777888877
Q ss_pred cc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh
Q 036287 178 KE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 178 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
++ .++.....+...+...|+.++|.+++++..+. +||.... ++.+....++.+++.+..+...+. -+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 64 47788999999999999999999999999883 5555322 334444569999999999998864 234466
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR 315 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 315 (488)
.+.++...+.+.+++++|.+.|+.. ...|+...+..+...+...|+.++|..++++.+.+-
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 7889999999999999999999998 788999999999999999999999999999987743
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=2.4e-11 Score=112.00 Aligned_cols=203 Identities=13% Similarity=0.130 Sum_probs=163.6
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChhHHHHH
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK---ERDVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
..|++++|.+.+++.+...-.-....|| +.-.|-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3467888888888887665333333333 3334677899999999887765 36777777888888888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP 283 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 283 (488)
+.+.... ++.|......|...|-+.|+-.+|.+.+-.-.+ -++.+..+...|...|....-+++|+..|++. -++|
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 8877654 566777788888999999999999888766543 45667888888999999999999999999998 6789
Q ss_pred CHHHHHHHHHHH-HHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 284 DHIMLGSLLSAC-KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 284 ~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
+..-|..++..| ++.|++++|..+++.+....|.+......|+..+...|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999998877 567999999999999999999999999999999988886
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=4.1e-11 Score=111.13 Aligned_cols=351 Identities=14% Similarity=0.109 Sum_probs=264.7
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC-C-ceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC-N-DVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
|+.||+..+... ..+..+|-..+.+=.++..+..|+.++++.... + --..|--.+..=-..|++..|.++|++-.
T Consensus 92 ARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 92 ARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 677888887766 566777888888888899999999998876441 1 12356666666677889999999998743
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc-CC-CCcHhHHH
Q 036287 78 VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RI-DLNHIVGG 155 (488)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~ 155 (488)
+|+..+|++.|..-.+-.+.+.|..+|++..- +.|+..+|.-...-=.+.|+...+.+++..+++. |- ..+..++.
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 78899999999988888899999999998876 4588888887777777888888888888877653 21 11233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-----------------------------------------------CCHHHHHHH
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE-----------------------------------------------RDVTTYNSL 188 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~-----------------------------------------------~~~~~~~~l 188 (488)
+....=.++..++.|.-+|+-..+ -|-.+|--.
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 444444556666666655543221 034567667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHhcccccCcccChhhHHH
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRPTKV-------TFVGVLNAC---SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGC 258 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 258 (488)
+..-...|+.+...++|++.... ++|-.. .|.-+--+| ....+++.+.++++...+ -++....|+.-
T Consensus 329 lrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaK 405 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAK 405 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHH
Confidence 77777789999999999999875 666321 222222222 246889999999999884 44555677776
Q ss_pred HHHHHH----hcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC
Q 036287 259 IVDLLS----RVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333 (488)
Q Consensus 259 li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 333 (488)
+--+|+ ++.++..|.+++... |.-|...++...|..-.+.++++...+++++.++.+|.+..+|.-.+..-...|
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 666665 688999999999887 889999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCccCCceeE
Q 036287 334 KWKEAVQIRAKMKEAGVQKEPGCSS 358 (488)
Q Consensus 334 ~~~~a~~~~~~m~~~g~~~~~~~s~ 358 (488)
+++.|..+|+..........|..-|
T Consensus 486 dtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 486 DTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred hHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999998776544444433
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.8e-11 Score=110.50 Aligned_cols=327 Identities=10% Similarity=0.006 Sum_probs=248.3
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHH-HHHHHHH
Q 036287 13 GLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCW-TAMIDGL 91 (488)
Q Consensus 13 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~~ 91 (488)
|-.-|.+.+-...-.+-+.|..+.|...|.....+- +..|.+-+....-.-+.+.+..+....+..+...- --+..+|
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 446666666666667778888889999888877766 77888877777777777777766655554332211 1244566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC--CCcHhHHHHHHHHHHhcCCHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI--DLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~ 169 (488)
....+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++ |.+..+-.-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skL 315 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHH
Confidence 66678888888888888888765555555555556678899999999999998741 12556666655 343332221
Q ss_pred ---HHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 170 ---ALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 170 ---A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
|..++ .+.+=-+.|.-.+.+-|.-.++.++|...|++..+. .|. ...++.+..-|....+...|.+-++.+.+
T Consensus 316 s~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 316 SYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 22222 222223456666778888899999999999999985 454 44566667789999999999999999984
Q ss_pred ccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 246 DYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 246 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
-.+.|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|++.|+++...+..+...|.
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 23446789999999999999999999999998 6777 5899999999999999999999999999999877888999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHh
Q 036287 324 LLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.|++.|-+.++.++|...+++-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999987765
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=5.1e-12 Score=122.09 Aligned_cols=274 Identities=15% Similarity=0.086 Sum_probs=211.3
Q ss_pred CHHHHHHHHhhcC--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCchHHHHHHH
Q 036287 65 LVENAFEVFSRVK--VKDT-VCWTAMIDGLVRNGEMARALDLFREMQRDNV--RPNEVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 65 ~~~~A~~~f~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
+.++|...|..++ .+|+ .....+..+|...+++++|.++|+.+.+... .-+..+|++.+--.-+.- +...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 5678888888866 2343 3445677899999999999999999887421 125677887776543211 12222
Q ss_pred -HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 140 -SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 140 -~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
+.+++.. +..+.+|.++.++|+-.++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2223322 556789999999999999999999999998864 457788888888888999999999998865 333
Q ss_pred CH-HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 036287 216 TK-VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSL 291 (488)
Q Consensus 216 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 291 (488)
.. ..|..+...|.+.++++.|+-.|+.+. .+.|. .....++...+-+.|+.++|++++++. ...| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 32 345567788999999999999999988 56665 555667788899999999999999998 4444 44444455
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...+...++.++|...++++.++-|++..+|..++..|-+.|+.+.|+.-|.-+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 666778899999999999999999999999999999999999999999988877654
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.7e-12 Score=123.90 Aligned_cols=244 Identities=13% Similarity=0.102 Sum_probs=196.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHH-HH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDK-AL 171 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-A~ 171 (488)
-+..+|+.+|...... +.-+......+..+|..++++++++++|+.+.+.. ...+..+|++.+--.-+.=.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3578999999995554 44455777788999999999999999999998764 22356777776643222111111 11
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcc
Q 036287 172 QVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIE 250 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 250 (488)
.+. .+....+.+|-++.+.|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... .
T Consensus 412 ~Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~ 483 (638)
T KOG1126|consen 412 DLI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----G 483 (638)
T ss_pred HHH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----c
Confidence 121 22234678999999999999999999999999988 566 67788888788888899999999999877 3
Q ss_pred cChhhHH---HHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 251 PQIEHYG---CIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 251 p~~~~~~---~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
.|+.+|+ .|...|.+.++++.|+-.|++. .+.|. .+....+...+.+.|+.|+|+.+++++..++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 4555665 5667899999999999999998 78884 67777788889999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHh
Q 036287 326 SNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+..+...+++++|++.++++++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH
Confidence 9999999999999999999987
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=7.7e-11 Score=115.66 Aligned_cols=281 Identities=13% Similarity=0.032 Sum_probs=197.0
Q ss_pred hcCChHHHHHHHhhCCCCCc--eeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 036287 30 KCGEFKDAMQLFDEMPECND--VVASTVMINCYVEHGLVENAFEVFSRVK--VKD--TVCWTAMIDGLVRNGEMARALDL 103 (488)
Q Consensus 30 ~~g~~~~A~~~~~~m~~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~ 103 (488)
..|+++.|++.+....+..+ ...+-....++.+.|+.+.|.+.|.+.. .|+ ....-.....+.+.|++++|+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 57899999999887766331 2233344566777899999999998853 233 23444457788889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH-------HhcCCHHHHHHHHHh
Q 036287 104 FREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY-------SRCGDIDKALQVFEE 176 (488)
Q Consensus 104 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y-------~~~g~~~~A~~~~~~ 176 (488)
++++.+.. |-+...+..+...+...|+++.+.+.+..+.+.+..+.......-...+ ......+...+..+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99998875 3466678888888999999999999999999887543332211111111 222233444555555
Q ss_pred ccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHhcccccCcc
Q 036287 177 MKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF---VGVLNACSHGGLVDLGFEIFQSMTRDYGIE 250 (488)
Q Consensus 177 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 250 (488)
.++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+...-.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 554 37788888889999999999999999998885 3444321 112222334577888888888877542222
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 251 PQIEHYGCIVDLLSRVGRPEEAYDFITN--M-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3225566888888999999999999993 3 6678888888889999999999999999998765
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.7e-13 Score=127.67 Aligned_cols=249 Identities=17% Similarity=0.197 Sum_probs=61.1
Q ss_pred HHHHHHHhcCChHHHHHHHhh-CCC---CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcC
Q 036287 23 KLVELYGKCGEFKDAMQLFDE-MPE---CNDVVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNG 95 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~-m~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g 95 (488)
.+..++.+.|++++|.++++. +.. ++++..|..+.......++.+.|.+.++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 456667777777777777743 222 224555555555666666666666666666532 23344455554 4666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC-CCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 96 EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR-IDLNHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 96 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
++++|.+++.+..+. .+++..+..++..+...++++.+..++..+.... .+.+...+..+...|.+.|+.++|.+.|
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666555443 2344445555555555666666666555554322 2334444555555555555555555555
Q ss_pred Hhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 175 EEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 175 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++..+ | |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..+|+...+. -+.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~ 246 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD 246 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccc
Confidence 54442 2 23444445555555555555444444444431 223333344444444555555555555544421 122
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFIT 277 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~ 277 (488)
|+.....+.+++...|+.++|.++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp -HHHHHHHHHHHT-------------
T ss_pred cccccccccccccccccccccccccc
Confidence 34444444444444444444444443
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=2.4e-11 Score=111.93 Aligned_cols=254 Identities=12% Similarity=0.119 Sum_probs=175.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 036287 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS--QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID 168 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 168 (488)
|.++|+++.|+++++-+.+..-+.-...-+.+-..+. .-.++..|.++-+..+... .-+......-.+.-...|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 4566666666666666554432222222222111111 1224555555555444332 112222222222334578999
Q ss_pred HHHHHHHhcccCCHHHHHHHHH---HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 169 KALQVFEEMKERDVTTYNSLIA---GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
+|...+++....|...-.+|.+ .+-..|+.++|++.|-++..- +..+......+.+.|....+..+|.+++.+...
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 9999999998888765444433 467889999999999998764 455667777888999999999999999988873
Q ss_pred ccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 246 DYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 246 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
-++.|+...+-|.+.|-+.|+-..|.+..-.- .. +-|..+..-|..-|....-.+.++..|+++.-..|.....-.
T Consensus 587 --lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 587 --LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred --cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 55667899999999999999999999876554 33 335666666777788888889999999999888887654444
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 324 LLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+..++.+.|++..|.++++....+
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5566778899999999999988654
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.43 E-value=3.9e-10 Score=113.41 Aligned_cols=333 Identities=11% Similarity=0.065 Sum_probs=195.8
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-----ceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--CC--HHHHH
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECN-----DVVASTVMINCYVEHGLVENAFEVFSRVKV--KD--TVCWT 85 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~--~~~~~ 85 (488)
.-++.+.+.|.+.|.-.|+++.+..+...+.... -..+|--+..+|-..|++++|...|.+... +| +..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 3456667778888888888888777766554421 233466677778888888888887766542 22 33455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----chHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG----ALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
-|.+.|.+.|+.+.|...|+...+.. +-+..|..++...|+..+ ..+.|..+.....+.- +.|...|-.+..+|
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 67777888888888888888777752 445566666666666654 3445555554444433 33444555555444
Q ss_pred HhcCCHHHHHHHHHhcc--------cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH-----HH-HHHHH
Q 036287 162 SRCGDIDKALQVFEEMK--------ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQ---GIRPTK-----VT-FVGVL 224 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~-----~t-~~~ll 224 (488)
-...- -.++.+|.... ...+...|.+...+...|++.+|...|.+.... ...+|. .| -..+.
T Consensus 425 e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 43222 11233332221 234455566666666666666666666655433 122222 11 11122
Q ss_pred HHHhccCCHHHHHHHHHhccccc--------------------------------CcccChhhHHHHHHHHHhcCChHHH
Q 036287 225 NACSHGGLVDLGFEIFQSMTRDY--------------------------------GIEPQIEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 225 ~a~~~~g~~~~a~~~~~~~~~~~--------------------------------~~~p~~~~~~~li~~~~~~g~~~~A 272 (488)
......++.+.|.+.|..+.+.+ ....++..++.+...+.+...+..|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 22333444455555554444321 2223333344444444444444444
Q ss_pred HHHHH----hCCCCCCHHHHHHHHHHHHHh------------CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChH
Q 036287 273 YDFIT----NMKIAPDHIMLGSLLSACKIH------------GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWK 336 (488)
Q Consensus 273 ~~~~~----~m~~~p~~~~~~~ll~~~~~~------------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 336 (488)
.+-|. +....+|+.+.-+|.+.|... +..++|.++|.++++.+|.|..+-+.++-+++..|++.
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch
Confidence 44222 222335666666666655322 34678999999999999999888889999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 036287 337 EAVQIRAKMKEAGV 350 (488)
Q Consensus 337 ~a~~~~~~m~~~g~ 350 (488)
+|..+|.+.++...
T Consensus 664 ~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 664 EARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=7e-11 Score=106.62 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=158.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 150 NHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
....+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677788888888999999888887654 345677888888888999999999999888753 3345566777788
Q ss_pred HhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHH
Q 036287 227 CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 304 (488)
+...|++++|.+.+...............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988753222233556777888899999999999999887 4444 466788888899999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
...+++..+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888899999999999999998887754
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=1.1e-11 Score=122.86 Aligned_cols=266 Identities=15% Similarity=0.149 Sum_probs=194.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 036287 102 DLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181 (488)
Q Consensus 102 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 181 (488)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 9999998888899999999999999999888776 788
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
..+|..+..+|.++|+..- ++..++ ....+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999765 333332 122344455556665555566655443334555543 3566
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 262 LLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG-KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
...-.|.++.+.+++..+|...-.......++-+.... .+++-....+...+ .+++.+|..++..-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 67778889999999988854321112222344443332 33444444444443 4577899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccc
Q 036287 341 IRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD 407 (488)
Q Consensus 341 ~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~ 407 (488)
++.+|+++|++-.+.+.|.++-+ .. ...-++.+++-|.+.|+.||..|....
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~-------~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------IN-------AAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Cc-------cchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 99999999999999999976543 11 123345578889999999999985433
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.5e-10 Score=105.89 Aligned_cols=232 Identities=11% Similarity=0.044 Sum_probs=112.2
Q ss_pred HHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-----ceeeHHHHHHHHHHcCCHH-HHHHHHhhcCCCCHH
Q 036287 9 VLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECN-----DVVASTVMINCYVEHGLVE-NAFEVFSRVKVKDTV 82 (488)
Q Consensus 9 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----~~~~~~~li~~~~~~g~~~-~A~~~f~~~~~~~~~ 82 (488)
+...|++-+.+.-+....++-...|+++|+.+|+++...+ |..+|+.++-.--.+..+. -|..++. +..=-+.
T Consensus 253 l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-idKyR~E 331 (559)
T KOG1155|consen 253 LSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-IDKYRPE 331 (559)
T ss_pred HHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hccCCcc
Confidence 3344444444444444444444555555555555554422 3334443332222111111 1222221 1111123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
|...+.+-|+-.++.++|...|++.++.+ +-....|+.+..-|..+.+...|.+-+..+++.. +.|-..|-.|..+|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 33344444555555555555555555543 2233445555555555555555555555555554 445555555555555
Q ss_pred hcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 163 RCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|......| ..+...+..|...+-+.++.++|.+.
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555555555555432 355555555555555555555555555555543 22444555555555555555555555
Q ss_pred HHhcc
Q 036287 240 FQSMT 244 (488)
Q Consensus 240 ~~~~~ 244 (488)
|..-.
T Consensus 489 yek~v 493 (559)
T KOG1155|consen 489 YEKYV 493 (559)
T ss_pred HHHHH
Confidence 55443
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=3.3e-10 Score=100.51 Aligned_cols=288 Identities=14% Similarity=0.152 Sum_probs=133.6
Q ss_pred CCHHHHHHHHhhcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCchHHHHH
Q 036287 64 GLVENAFEVFSRVKVKDTV---CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN---EVTIVCVLSACSQLGALELGRW 137 (488)
Q Consensus 64 g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~ 137 (488)
.+.++|.++|-.|.+-|.. +.-+|.+.|.+.|+.+.|+++-+.+.++.--+. ......+..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444555555444433322 223444455555555555555554443210000 1122233344445555555555
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHH--------HHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 138 IHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVT--------TYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 138 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+|..+.+.+ +.-.....-|+..|-+..+|++|..+-+++..-+.. .|--+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 555554433 112233344555555555555555554444332111 12223333334455555555555555
Q ss_pred HcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 036287 210 NQGIRPTKVTF-VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIM 287 (488)
Q Consensus 210 ~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 287 (488)
+.+ |+.+-- ..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+....
T Consensus 208 qa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 208 QAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred hhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 532 222111 12334455555555555555555543 22222445555555666666666665555554 33333333
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh---cCCChHHHHHHHHHHHhCCCccCCce
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA---SSGKWKEAVQIRAKMKEAGVQKEPGC 356 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~ 356 (488)
-..+...-....-.+.|...+.+-+...|.- ..+..|+..-. ..|.+.+.+.+++.|....++..|.+
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 3333333333444455555555555555543 33444444332 33557777888888877766655543
No 45
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.2e-09 Score=97.63 Aligned_cols=329 Identities=13% Similarity=0.116 Sum_probs=153.7
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCCCC---ceeeHHHHHHHHHHcCCHHHHHHHHhhcC----CCCHHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPECN---DVVASTVMINCYVEHGLVENAFEVFSRVK----VKDTVCWTAMID 89 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~ 89 (488)
+..++..+|.+.+|-...+.|.+++.+..+.. +..++|.+|.+-.-..+ .++..+|. .||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 34455555555555555555555555443321 23344444443322222 22222222 455555555555
Q ss_pred HHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH-HHHHHHHHHH----cCC----CCcHhHHHH
Q 036287 90 GLVRNGEMAR----ALDLFREMQRDNVRPNEVTIVCVLSACSQLGALEL-GRWIHSYMGK----HRI----DLNHIVGGA 156 (488)
Q Consensus 90 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~----~~~~~~~~~ 156 (488)
+.++.|+++. |++++.+|++-|+.|...+|..+|..+.+-++..+ +..+...+.. ..+ +.|...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 5555554433 34444555555555555555555555555444422 2222222221 111 112233344
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC--------C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKER--------D---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
.++.+....+.+-|.++-.-.... + ..-|..+....++....+.-+..|+.|.-.-.-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 444444555555555544333321 1 12234445555555666666666666665556666667777777
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC-C-------------------hHHHHH-HHHhC-CCCC
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG-R-------------------PEEAYD-FITNM-KIAP 283 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~-------------------~~~A~~-~~~~m-~~~p 283 (488)
|..-.+.++-..+++..+.. +|-.-......-+...+++.. + +.++.+ --.+| ....
T Consensus 442 A~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 76666666666666655553 232222111112222222211 0 111100 01111 1222
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---CCCc--hhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR---SADS--GTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.....+..+-.+.+.|..++|.+++..+.+.. |..+ .+..-|.+.-........|..+++-|...+.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 34444555555666777777777777665422 2221 1223444555556666777777776655444
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=1.9e-09 Score=98.65 Aligned_cols=278 Identities=14% Similarity=0.102 Sum_probs=147.2
Q ss_pred cCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHH
Q 036287 63 HGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 63 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
.|++.+|++...+-. +..+..|..-+.+--+.|+.+.|-.++.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 355555555554422 11223333333444445555555555555544311233333334444445555555555555
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036287 140 SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD-----------VTTYNSLIAGLAMHGRSIEAVEMFREM 208 (488)
Q Consensus 140 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m 208 (488)
..+.+.+ +.+..+.......|.+.|++.....++..+.+.. ..+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5555444 3334444555555555555555555555554421 123444444333333333333333332
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHH
Q 036287 209 INQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHI 286 (488)
Q Consensus 209 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~ 286 (488)
-.. .+-+...-.+++.-+.+.|+.++|.++.....+. +..|+.. ..-...+-++.+.-++..++- ..+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 221 2333344444445555555555555555555432 3333310 111122233333333322222 1222457
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+.+|...|.+++.+.+|...|+..++..|.. .+|..+..++.+.|+..+|.+++++..-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88899999999999999999999888888755 79999999999999999999999887643
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.37 E-value=6.8e-09 Score=100.33 Aligned_cols=301 Identities=12% Similarity=0.050 Sum_probs=183.8
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS 127 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 127 (488)
..|-....-+-..|++..|+.++.+.- ..+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..--
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 344444444455556655555555433 123445555555566666666666666655542 344444444444444
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHH
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
-+++.++|.++++..++.- +.-...|-.+...|-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|+.-.|..+
T Consensus 663 ~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 4555666666665555542 33344555555666666666666666554433 2 334555555555556666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPD 284 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 284 (488)
|++....+ +-|...|...+..=.+.|..++|..+..+..+ .++.+...|..-|.+..+.++-..+.+.+++-. -|
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~d 816 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HD 816 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CC
Confidence 66655542 33445555666666666666666666666654 334445556666666666655555555555443 35
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCCceeEEEE
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 361 (488)
+.+.-++...+-....++.|.+.|.+.++.+|++..+|.-+...+...|.-++-.++++..... .|.-|..|..+
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 5666667777778888999999999999999999999999999999999999999998877653 34455566533
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.1e-09 Score=97.17 Aligned_cols=262 Identities=15% Similarity=0.129 Sum_probs=176.1
Q ss_pred cCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcC-CCCH------HHHHHHHHHHHHcCCHHHHH
Q 036287 31 CGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVK-VKDT------VCWTAMIDGLVRNGEMARAL 101 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~~------~~~~~li~~~~~~g~~~~A~ 101 (488)
..+.++|.++|-+|.+.+ +..+.-+|.+.|.+.|.+|.|+++-..+. .||. .+.-.|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 457788888888877644 34445577788888888888888877765 3432 23445667777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 102 DLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN----HIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 102 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
.+|..+.+.| ..-......++..|-...++++|..+-..+.+.+-++. ...|.-|...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888877754 33456677778888888888888888887777664433 233455666666677788888888776
Q ss_pred ccCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh
Q 036287 178 KERDV---TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 178 ~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
.+.|. ..--.+...+...|+++.|++.++...+.+..--..+...|..+|.+.|+.+++..++..+.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 65332 3334455667778888888888888877654444556667777888888888888888777743 44444
Q ss_pred hHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFI-TNMKIAPDHIMLGSLLSACK 296 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~ 296 (488)
.-..|.+.-....-.+.|...+ +.+.-+|+...+..++..-.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 4455555544444455555444 44466788777777776543
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.3e-09 Score=109.77 Aligned_cols=309 Identities=16% Similarity=0.150 Sum_probs=139.2
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVKVKD------TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE--VTIVC 121 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ 121 (488)
+++.+.|.+-|.-.|+++.++.+...+...+ ..+|-.+.++|...|++++|...|.+..+.. ||. ..+..
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~G 347 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVG 347 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccc
Confidence 3334444444444444444444444333111 1233444444444444444444444443321 222 22223
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----CHHHHHHHHHhcccC---CHHHHHHHHHHHHh
Q 036287 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG----DIDKALQVFEEMKER---DVTTYNSLIAGLAM 194 (488)
Q Consensus 122 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 194 (488)
+...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..++ |...|-.+...|-+
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 3344444444444444444444432 223333344444444332 233333333333321 33334333333332
Q ss_pred cCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccC--cccCh------hhHHHHHHH
Q 036287 195 HGRSIEAVEMFREMI----NQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG--IEPQI------EHYGCIVDL 262 (488)
Q Consensus 195 ~g~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li~~ 262 (488)
++...++..|.... ..+-.+.....+.+.......|+++.|...|........ ..++. .+--.+...
T Consensus 427 -~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 -TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred -cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 22222244443322 223334444555555555555666666665555542100 11111 111223344
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 263 LSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
+-..++.+.|.+.+..+ ...|. ...|--++......++..+|...++.+++.+..++.++..+++.|.+...|..|.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 44455556666665555 33343 22333333333344566677777777777776677777777777777777777777
Q ss_pred HHHHHHhCCCccCCceeEEEEC
Q 036287 341 IRAKMKEAGVQKEPGCSSIEVN 362 (488)
Q Consensus 341 ~~~~m~~~g~~~~~~~s~~~~~ 362 (488)
-|+...++-...+..+|.+.++
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhh
Confidence 6666655544333334444333
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=9.7e-10 Score=102.64 Aligned_cols=211 Identities=13% Similarity=0.135 Sum_probs=158.6
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFR 206 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 206 (488)
|+.-.+.+-++..++.... +...|--+..+|....+.++-.+.|+...+ .|..+|..-.+.+.-.+++++|..=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555544322 223355566677888888888888877664 355677777777777888999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036287 207 EMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD 284 (488)
Q Consensus 207 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 284 (488)
+.+. +.| +...|..+-.+..+.+.++++...|+...+ .++..+++|+.....+...+++++|.+.|+.. .+.|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 8887 444 345666666677788999999999999997 55666889999999999999999999999876 44443
Q ss_pred ---------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 285 ---------HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 285 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+.+-.+++..- =.+++..|..+++++++++|....+|..|...-...|+.++|+++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222332222 23899999999999999999999999999999999999999999999754
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=1.1e-09 Score=111.67 Aligned_cols=257 Identities=14% Similarity=0.066 Sum_probs=186.6
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---------cCchHHHHHHHHHHHH
Q 036287 80 DTVCWTAMIDGLVR-----NGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQ---------LGALELGRWIHSYMGK 144 (488)
Q Consensus 80 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 144 (488)
+..+|...+.+-.. .+..++|+.+|++..+. .|+ ...+..+..++.. .+++++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 55666666665322 13467999999999885 354 4455555544432 2447899999999998
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HH
Q 036287 145 HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV-TF 220 (488)
Q Consensus 145 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 220 (488)
.. +.+..++..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 86 55778888899999999999999999999775 3 4668888999999999999999999999985 45432 23
Q ss_pred HHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHH
Q 036287 221 VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDH-IMLGSLLSACKI 297 (488)
Q Consensus 221 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~ 297 (488)
..++..+...|++++|...+.++.+. ..|+ +..+..+..+|...|++++|...++++ +..|+. ..++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566688999999999988742 2343 555777888999999999999999987 455553 444555556666
Q ss_pred hCChhHHHHHHHHHHhcC---CCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 298 HGKLQLGEQIAKRLLDCR---SADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.| +.|...++.+.+.. |.++. .+...|+-.|+-+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 47888788877643 44433 366677778887777776 7777654
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=4.7e-09 Score=96.06 Aligned_cols=277 Identities=14% Similarity=0.078 Sum_probs=224.4
Q ss_pred cCChHHHHHHHhhCCCCCc--eeeHHHHHHHHHHcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHH
Q 036287 31 CGEFKDAMQLFDEMPECND--VVASTVMINCYVEHGLVENAFEVFSRVKVK----DTVCWTAMIDGLVRNGEMARALDLF 104 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 104 (488)
.|++..|+++..+-.+..+ ...|..-..+--+.|+.+.|-..+.+..++ +....-+........|++..|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6999999999988665432 344445556667889999999999887644 4456777788899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 105 REMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNH-------IVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 105 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
.++.+.+ +-++........+|.+.|++.....+...+.+.|.-.+. .++..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9999876 446778889999999999999999999999999865553 45666666655556666656677777
Q ss_pred cc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh
Q 036287 178 KE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 178 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++.+.-.+..+.-.+.++..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 64 4677777888899999999999999999999877776 2233456777888777777777776555555 6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
.+..|...|.+.+.+.+|.+.|+.. +.+|+...|+.+..++.+.|+.++|.+..++.+-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7888999999999999999999987 88999999999999999999999999999998753
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=3.4e-12 Score=84.27 Aligned_cols=50 Identities=26% Similarity=0.603 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036287 79 KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ 128 (488)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 128 (488)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999864
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=6.7e-12 Score=82.84 Aligned_cols=50 Identities=38% Similarity=0.661 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 180 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.30 E-value=1.6e-08 Score=97.82 Aligned_cols=318 Identities=11% Similarity=0.032 Sum_probs=242.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC------------------------
Q 036287 24 LVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK------------------------ 77 (488)
Q Consensus 24 li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~------------------------ 77 (488)
|.-+|++..-++.|.++++...+ +.+...|.+-...=-.+|+.+...++.++-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34456667778888888877655 3357777776666666777776666655431
Q ss_pred --------------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHH
Q 036287 78 --------------------VK-DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGR 136 (488)
Q Consensus 78 --------------------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 136 (488)
+. --.+|+.-...|.+.+.++-|..+|...++. .+-+...|..+...--..|..+.-.
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 00 1225666666677777777788888777764 3445566666666656677888888
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 137 WIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 137 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
.+++.++..- +.....|-....-+-..|++..|+.++.+.-+ .+...|-+-+..-..+..++.|..+|.+... .
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~ 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--I 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--c
Confidence 8888887764 44555666667777778999999988887765 3567888888888899999999999998877 5
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 036287 214 RPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGS 290 (488)
Q Consensus 214 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 290 (488)
.|+...|..-+..-.-.+..++|.++++...+. -|+ ...|..+.+.+-+.++++.|.+.|..- ..-|+ ...|-.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 677777776666666788999999999988864 344 678888899999999999998888765 55555 678888
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
|...--+.|++-+|..++++..-.+|.+...|...+.+-.+.|..+.|..+..+..+.
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888889999999999999999999999999999999999999999999888776553
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=1.8e-09 Score=97.33 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...+..+...|...|++++|+..+++..+.. +.+...+..+...+...|+++.|.+.+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455566666666666666666666665542 2334455555555666666666666666655543 2233444555555
Q ss_pred HHhcCCHHHHHHHHHhcccC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 161 YSRCGDIDKALQVFEEMKER-----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
|...|++++|.+.|++.... ....+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554321 12334444445555555555555555554431 1122334444444444455555
Q ss_pred HHHHHHhcc
Q 036287 236 GFEIFQSMT 244 (488)
Q Consensus 236 a~~~~~~~~ 244 (488)
|...++...
T Consensus 188 A~~~~~~~~ 196 (234)
T TIGR02521 188 ARAYLERYQ 196 (234)
T ss_pred HHHHHHHHH
Confidence 555444444
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.28 E-value=1.2e-08 Score=102.38 Aligned_cols=345 Identities=14% Similarity=0.104 Sum_probs=252.5
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC-
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEM--PECNDVVASTVMINCYVEHGLVENAFEVFSRVKV- 78 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~- 78 (488)
|..|+..+++.. +.....|.+|...|-..|+.+++...+--. ..+.|...|-.+.....+.|.+++|.-.|.+..+
T Consensus 158 A~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~ 236 (895)
T KOG2076|consen 158 AEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA 236 (895)
T ss_pred HHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 456777777765 556778999999999999999998876443 3455689999999999999999999999998763
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCchHHHHHHHHHHHHcC-CCCcH
Q 036287 79 --KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV----TIVCVLSACSQLGALELGRWIHSYMGKHR-IDLNH 151 (488)
Q Consensus 79 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 151 (488)
++....--=+..|-+.|+...|...|.++.....+.|.. +...++..+...++-+.|.+++......+ -..+.
T Consensus 237 ~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ 316 (895)
T KOG2076|consen 237 NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASL 316 (895)
T ss_pred CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccc
Confidence 344444445668899999999999999999874322322 22334566777777788888888776632 24456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc----CC---------------------------HHHHHHHHHHHHhcCChhH
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKE----RD---------------------------VTTYNSLIAGLAMHGRSIE 200 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~---------------------------~~~~~~li~~~~~~g~~~~ 200 (488)
..++.++.+|.+...++.|......+.. +| ..... +.-++......+.
T Consensus 317 ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~ 395 (895)
T KOG2076|consen 317 EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLKEREL 395 (895)
T ss_pred cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhhhhhcccccch
Confidence 6778899999999999999877665542 11 11211 2223334444444
Q ss_pred HHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 201 AVEMFREMINQGIRP--TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 201 A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
...+.....+.++.| +...|.-+..++...|.+.+|..+|..+... ...-+..+|--+..+|-..|..++|.+.++.
T Consensus 396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444455555444 4556888999999999999999999999864 3333477899999999999999999999998
Q ss_pred C-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---------CCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 279 M-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCR---------SADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 279 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
. ...|+ ...--+|...+...|+.++|.+.++.+..-+ +++..........|...|+.++-..+-.+|..
T Consensus 475 vl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 475 VLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8 55664 5566677778889999999999999876433 22334556778889999999988877777765
Q ss_pred CC
Q 036287 348 AG 349 (488)
Q Consensus 348 ~g 349 (488)
..
T Consensus 555 ~~ 556 (895)
T KOG2076|consen 555 DF 556 (895)
T ss_pred HH
Confidence 43
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.6e-09 Score=110.59 Aligned_cols=256 Identities=11% Similarity=0.034 Sum_probs=182.2
Q ss_pred ceeeHHHHHHHHHH-----cCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCC
Q 036287 49 DVVASTVMINCYVE-----HGLVENAFEVFSRVKV--K-DTVCWTAMIDGLVR---------NGEMARALDLFREMQRDN 111 (488)
Q Consensus 49 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g 111 (488)
+...|...+.+-.. .+++++|...|++... | +...|..+..+|.. .+++++|...+++..+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 35556666665422 2346799999998763 3 45567766665542 345899999999999865
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-HHHHHHH
Q 036287 112 VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RD-VTTYNSL 188 (488)
Q Consensus 112 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~l 188 (488)
+-+...+..+...+...|++++|...++++++.+ +.+...+..+...|...|++++|...+++..+ |+ ...+..+
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 4467788888888899999999999999999986 55677888899999999999999999999875 33 2234445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhc
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRV 266 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 266 (488)
+..+...|++++|+..+++..... +|+ ...+..+..++...|+.++|...+..+... .|+ ....+.+...|.+.
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhcc
Confidence 555777899999999999988753 354 344566777788999999999999887642 444 44455666677777
Q ss_pred CChHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 036287 267 GRPEEAYDFITNM----KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR 315 (488)
Q Consensus 267 g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 315 (488)
| ++|...++.+ ...|...-+.. ..+.-+|+.+.+... +++.+.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4676666655 33343333433 344556776766655 7776644
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4e-09 Score=100.42 Aligned_cols=261 Identities=12% Similarity=0.037 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
+...-.-..-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=..+++.- |....+|-++.--
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3334445556778899999999999988864 5666666666778888888777777666677653 6667889999999
Q ss_pred HHhcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 161 YSRCGDIDKALQVFEEMKERD---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.+..+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 999999999999999876544 368999999999999999999999887764 2222233444555688899999999
Q ss_pred HHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC--C---C---CC-CHHHHHHHHHHHHHhCChhHHHHH
Q 036287 238 EIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM--K---I---AP-DHIMLGSLLSACKIHGKLQLGEQI 307 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~---~---~p-~~~~~~~ll~~~~~~g~~~~a~~~ 307 (488)
++|.... ++.|+ +.+.+-+.-..-..+.+.+|..+|+.. + + .+ -..+++.|..+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999987 56664 667777777777788999999998876 1 1 11 245688889999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 308 AKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 308 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+++.+.+.|.++.+|.+++-.|...|+++.|.+.|.+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987643
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=1.5e-09 Score=108.15 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=158.4
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCC---ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECN---DVVASTVMINCYVEHGLVENAFEVFSRVKVKD 80 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 80 (488)
.++..+...|+.|+.++|..||.-|+..|+++.|- +|.-|..++ +...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 888887654 5678899999888888877665 778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-HH-------HCCCCCCHHHHHHHHHH--------------HHhcCchHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFRE-MQ-------RDNVRPNEVTIVCVLSA--------------CSQLGALELGRWI 138 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~--------------~~~~~~~~~a~~~ 138 (488)
..+|..|..+|.+.|+... ++..++ |. ..|+..-..-+-..+.+ ....|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765 222222 21 12221111111111111 1122222333333
Q ss_pred HHHHHHcC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036287 139 HSYMGKHR-IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE-RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT 216 (488)
Q Consensus 139 ~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 216 (488)
...+.... ..|..+ + |=.+-.....+++-...-....+ ++..++.+.+..-...|+.+.|..++.+|.+.|++.+
T Consensus 162 l~~~Pvsa~~~p~~v-f--Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQV-F--LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HhhCCcccccchHHH-H--HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 22221110 001111 0 11111111223333222233333 7788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC
Q 036287 217 KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 217 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 268 (488)
..-|..|+-+ .++...+..+...|.+ .|+.|+..|+.-.+-.+...|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 8888777765 6777777777777775 4888888888766655555443
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=3.7e-09 Score=103.30 Aligned_cols=232 Identities=19% Similarity=0.207 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHc-----CC-CCcHh-HHHHHHHHHHhcCCHHHHHHHHHhccc-------C-
Q 036287 116 EVTIVCVLSACSQLGALELGRWIHSYMGKH-----RI-DLNHI-VGGALINMYSRCGDIDKALQVFEEMKE-------R- 180 (488)
Q Consensus 116 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~-------~- 180 (488)
..|+..+...|...|+++.|..+++..++. |. .|.+. ..+.+..+|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 457777889999999999999999988765 21 22322 334577899999999999999988763 1
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHhcccccC--
Q 036287 181 ---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ-----GI-RPTKV-TFVGVLNACSHGGLVDLGFEIFQSMTRDYG-- 248 (488)
Q Consensus 181 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 248 (488)
-..+++.|..+|.+.|++++|...+++..+- |. .|... -++.+...|...+.+++|..++....+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2357888888999999999988888776541 22 22322 345566678899999999999887665332
Q ss_pred cccC----hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh-
Q 036287 249 IEPQ----IEHYGCIVDLLSRVGRPEEAYDFITNM---------KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD- 313 (488)
Q Consensus 249 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 313 (488)
..++ ..+++.|...|...|++++|.+++++. +..+. ...++.|..+|...++.++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 468999999999999999999999887 12222 56678889999999999999999988765
Q ss_pred ---cCC---CCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 314 ---CRS---ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 314 ---~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.+| +...+|..|+.+|.+.|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344 3456788999999999999999999988753
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.7e-08 Score=89.78 Aligned_cols=295 Identities=12% Similarity=0.008 Sum_probs=212.6
Q ss_pred hHHHHHHHHHhc--CChHHHHHHHhhC--CC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHH---HHHHHHH
Q 036287 20 TRLKLVELYGKC--GEFKDAMQLFDEM--PE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVC---WTAMIDG 90 (488)
Q Consensus 20 ~~~~li~~y~~~--g~~~~A~~~~~~m--~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~ 90 (488)
+...-+.+|+.+ ++-..|...+-.+ .. ++++....++...+...|+.++|+..|++...-|+.+ ...-.-.
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH
Confidence 333344555443 4444554444322 22 4568888999999999999999999999876444332 2222334
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
+.+.|++++...+...+.... +-+...|..-+.......+++.|..+-+..++.. +.++..+-.-..+....|+.++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHH
Confidence 567888888888877776532 2334445445555566778888888888887765 33445554445677788999999
Q ss_pred HHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHhccc
Q 036287 171 LQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVL-NACS-HGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~ 245 (488)
.-.|+.... -+..+|.-++..|...|++.+|.-+-+...+. ++.+..+...+. ..|. ....-++|.+++++-.
T Consensus 354 ~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L- 431 (564)
T KOG1174|consen 354 VIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL- 431 (564)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh-
Confidence 999987553 47789999999999999999999887776654 444555555442 3333 2334588999998876
Q ss_pred ccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 246 DYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 246 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
.+.|+ ....+.+...+...|..++++.++++. ...||....+.|...+...+.+++|...|..++..+|.+..
T Consensus 432 --~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 432 --KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred --ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 45777 566778888999999999999999887 77889999999999999999999999999999999998843
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.5e-09 Score=96.48 Aligned_cols=229 Identities=14% Similarity=0.123 Sum_probs=155.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-+.||..+-++|.+..+++.|..++.+-++. ++.++.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 55667777777777777777776664 455666777777777777777777777766654 244555555566666666
Q ss_pred CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 036287 165 GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241 (488)
Q Consensus 165 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 241 (488)
++.++|.++++...+ .++.+...+..+|.-.++++-|+..|+++.+.|+. +...|+.+.-+|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777666554 24444555555666666677777777776666643 34445555555555555555554444
Q ss_pred hcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 242 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
.... -..+.++ -..+|..+.......||+..|.+.|+-.+..+|++..+
T Consensus 383 RAls-------------------tat~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALS-------------------TATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHh-------------------hccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 4331 1111111 25667777777778899999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 322 YVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++.|.-.-.+.|+.++|..++...+..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999999987664
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=2.3e-07 Score=86.82 Aligned_cols=341 Identities=13% Similarity=0.128 Sum_probs=240.9
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--C
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVK--V 78 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~ 78 (488)
|+-+++..+..-...|- .|-..+.|=-..|++..|+++|++-.+ .++..+|++.|.-=.+-..++.|..++++.. .
T Consensus 126 ARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H 204 (677)
T KOG1915|consen 126 ARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH 204 (677)
T ss_pred HHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec
Confidence 55666666654322232 344445555567888888888876544 4447888888888888888888888888754 7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCchHHHHHHHHHHHHcC--------
Q 036287 79 KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS----QLGALELGRWIHSYMGKHR-------- 146 (488)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g-------- 146 (488)
|++.+|--...---++|+...|..+|...... -.|...-..+..+++ +....+.|.-+++..++.-
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL 282 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEEL 282 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 78888877777777888888888888777653 122322233333332 2334455555544443321
Q ss_pred -----------------------------------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCH---HHHH
Q 036287 147 -----------------------------------IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDV---TTYN 186 (488)
Q Consensus 147 -----------------------------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~ 186 (488)
-+.|-.+|--.+..-...|+.+...++|++... |.. ..|.
T Consensus 283 ~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 283 YKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 023344555666666778999999999998764 211 1232
Q ss_pred HHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHhcccccCcccChh
Q 036287 187 SLIAG--------LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS----HGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 187 ~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
-.|-. =....+.+.+.++|+..++. ++-...||..+--.|+ +..++..|.+++.... |.-|...
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~K 438 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchh
Confidence 22211 12467899999999999984 5666788876655544 5678999999999988 8899999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC--chhHHHHHHHHh
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD--SGTYVLLSNAYA 330 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~ 330 (488)
++...|+.=.+.+.++....++++. ...| |-.+|......-...|+.+.|..+|+-+++....+ ...+...++.-.
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI 518 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh
Confidence 9999999999999999999999987 5666 57899999888899999999999999988744222 135666777778
Q ss_pred cCCChHHHHHHHHHHHhCC
Q 036287 331 SSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~g 349 (488)
..|.++.|..+++.+.+..
T Consensus 519 ~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcchHHHHHHHHHHHHHhc
Confidence 8999999999999998753
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=3.2e-08 Score=92.55 Aligned_cols=221 Identities=14% Similarity=-0.020 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 95 GEMARALDLFREMQRDN-VRPN--EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...+...++.. +.+..+++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777776532 1222 3446666677778888888888888887765 446778888888888888888888
Q ss_pred HHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccC
Q 036287 172 QVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG 248 (488)
Q Consensus 172 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 248 (488)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88888754 2 4567888888888888999999988888874 45443222222234456778888888866543 2
Q ss_pred cccChhhHHHHHHHHHhcCChHHH--HHHHHhC-CC----CC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 249 IEPQIEHYGCIVDLLSRVGRPEEA--YDFITNM-KI----AP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 249 ~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
..|+...+ .++.. ..|++.++ .+.+.+- .. .| ....|..+...+...|++++|...|+++++.+|++..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23332222 23332 34444433 3222221 11 12 2457888899999999999999999999999976644
Q ss_pred hHH
Q 036287 321 TYV 323 (488)
Q Consensus 321 ~~~ 323 (488)
-+.
T Consensus 272 e~~ 274 (296)
T PRK11189 272 EHR 274 (296)
T ss_pred HHH
Confidence 333
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=1.9e-08 Score=98.42 Aligned_cols=231 Identities=13% Similarity=0.113 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCchHHHHHHHHHHHHc-----C--CC
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRD-----N-VRPNEVT-IVCVLSACSQLGALELGRWIHSYMGKH-----R--ID 148 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~ 148 (488)
+...|...|...|+++.|+.++++.++. | ..|...+ ...+...|...+++++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445889999999999999999988764 2 1334333 334677888999999999999988653 2 12
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc----------CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKE----------RDV-TTYNSLIAGLAMHGRSIEAVEMFREMINQ---GIR 214 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~ 214 (488)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ...+.++..+...+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245667778899999999999888876542 222 24666777888999999999999876642 133
Q ss_pred CCH----HHHHHHHHHHhccCCHHHHHHHHHhccccc-----CcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-----
Q 036287 215 PTK----VTFVGVLNACSHGGLVDLGFEIFQSMTRDY-----GIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM----- 279 (488)
Q Consensus 215 p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----- 279 (488)
++. -++..+...|...|++++|.++|.++.... +..+. ..+++.|...|.+.++..+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 468889999999999999999999887532 11222 467788999999999999999888775
Q ss_pred ---CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 280 ---KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 280 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
+-.|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444 57899999999999999999999998875
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=6.7e-08 Score=90.64 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=201.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 036287 55 VMINCYVEHGLVENAFEVFSRVK--VKD-TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE-VTIVCVLSACSQLG 130 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~ 130 (488)
...+-|.+.|.+++|++.+.... .|| .+.|.....+|...|+|+++.+--.+.++ +.|+- ..+..-.++.-.+|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 44556788899999999998865 456 77888899999999999999888887777 45663 45666677888888
Q ss_pred chHHHHHH----------------------HHH--------HHH-cC--CCCcHhHHHHHHHHHH---------hcC---
Q 036287 131 ALELGRWI----------------------HSY--------MGK-HR--IDLNHIVGGALINMYS---------RCG--- 165 (488)
Q Consensus 131 ~~~~a~~~----------------------~~~--------~~~-~g--~~~~~~~~~~li~~y~---------~~g--- 165 (488)
+++++..= +.. -.+ .+ +-|+.....+....+. +..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 88766531 110 001 11 1122222111111110 000
Q ss_pred -CHHHHHHHHHhc------------cc----------CC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 166 -DIDKALQVFEEM------------KE----------RD---------VTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 166 -~~~~A~~~~~~~------------~~----------~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
.+.++.+.+..- .+ .+ +.+.+.-..-+.-.|+.-+|..-|+..+....
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 011121111111 00 01 11112222224557899999999999998654
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 036287 214 RPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGS 290 (488)
Q Consensus 214 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 290 (488)
.++.. |..+..+|....+.++.++.|+... .+.| ++.+|..-..++.-.+++++|..-|++. .+.|+ +..|-.
T Consensus 358 ~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 358 AFNSL-YIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred ccchH-HHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 44432 7777888999999999999999987 4444 4677877788888889999999999988 77774 677777
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+.-+..+.+.++++...|++..+..|.-+..|+....++...++++.|.+.|+...+.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 7777788889999999999999999999999999999999999999999999988663
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.7e-08 Score=94.44 Aligned_cols=212 Identities=18% Similarity=0.099 Sum_probs=154.5
Q ss_pred CchHHHHHHHHHHHHcC-CCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHH
Q 036287 130 GALELGRWIHSYMGKHR-IDLN--HIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 203 (488)
+..+.+..-+.+++... ..|+ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566666676776532 2222 45677888899999999999999998765 467899999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--C
Q 036287 204 MFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--K 280 (488)
Q Consensus 204 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 280 (488)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...+++++|.+.+.+. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999984 554 56777788888999999999999999884 3555332222223345678899999999665 3
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHH-------hcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 281 IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLL-------DCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 281 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
..|+...| .......|+...+ ..++.+. +..|..+.+|..++..|...|++++|...|++..+.++
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333322 2222345666554 3444444 34456667899999999999999999999999887543
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=8.5e-07 Score=81.70 Aligned_cols=154 Identities=14% Similarity=0.029 Sum_probs=81.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHH-HHHH-hc
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIV-DLLS-RV 266 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~ 266 (488)
...+.+.|++++|.-.|+..+.. -+-+...|..|+..|...|.+.+|...-+...+ -++.+..+.+.+. +.+. ..
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCc
Confidence 34455555666666666555542 123445555666666666666555554444432 2222233332221 1111 11
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 267 GRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 267 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
.--++|.+++++. .++|+ ....+.+...|...|..+.+..++++.+...|++ ...+.|.+.+...+.+.+|.+.|..
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2234555555554 55565 3445555566666677777777777766666544 5666677777777777777666665
Q ss_pred HH
Q 036287 345 MK 346 (488)
Q Consensus 345 m~ 346 (488)
..
T Consensus 497 AL 498 (564)
T KOG1174|consen 497 AL 498 (564)
T ss_pred HH
Confidence 53
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.2e-08 Score=90.89 Aligned_cols=226 Identities=14% Similarity=0.099 Sum_probs=180.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcC
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVK--VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI-VCVLSACSQLG 130 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~ 130 (488)
+.+..+|.+.|-+.+|.+.|+.-. .|-+.||-.|-.+|.+-.++..|+.+|.+-++. .|-.+|| ..+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 578899999999999999998765 567789999999999999999999999988775 4555555 45778888999
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
+.+.+.++++...+.. +.++.....+...|.-.|+.+.|...++++.+ .+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 9999999999998875 45666666677788889999999999998776 5778899999999999999999999999
Q ss_pred HHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036287 208 MINQGIRPTK--VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD 284 (488)
Q Consensus 208 m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 284 (488)
.+..--.|+. ..|..+-......|++..|.+.|+.... .-......++.|.-.-.+.|++++|..+++.. .+.|+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 8865444543 3455566666778888888888887764 22334677777777777888888888888776 34443
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.2e-07 Score=90.58 Aligned_cols=273 Identities=11% Similarity=0.014 Sum_probs=204.0
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
+.....-..-+...+++++..++++.+.+. +...+..=|.++...|+..+-..+=.+|.+. .|-.+.+|.++.--|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence 556666667778888999999888887643 4556666777888899888888888888876 355678999998888
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 203 (488)
...|...+|++.+......+ +.-...|-.....|+-.|.-|.|...+....+ ..-..+--+.--|.+.+..+-|.+
T Consensus 323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 88899999999998876654 22355788888999999999999888766543 111112223334777889999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-Cc---c-cChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 204 MFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-GI---E-PQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 204 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
.|.+.... .+-|+...+-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++|+..+++
T Consensus 402 Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 99988773 23345555555555566788899999888776210 01 1 1345688899999999999999999998
Q ss_pred C-CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 279 M-KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 279 m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
. .. +.|..++.++.-.+...|+++.|...|.+.+.+.|+|..+-..|
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 7 33 34688899999999999999999999999999999985443333
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.04 E-value=6.1e-07 Score=88.88 Aligned_cols=334 Identities=14% Similarity=0.090 Sum_probs=201.7
Q ss_pred hCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC--CceeeHHHHHHHHHHcCCHHHHHHHHhhcC--C--CCHHHHH
Q 036287 12 LGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC--NDVVASTVMINCYVEHGLVENAFEVFSRVK--V--KDTVCWT 85 (488)
Q Consensus 12 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~--~~~~~~~ 85 (488)
.-+.-|..+|..|.-+...+|+++.+-+.|++...- +....|+.+...|..+|.-..|..+.+.-. . |+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345568889999999999999999999999986541 236789999999999999889998887654 2 2222211
Q ss_pred HHH-HHHH-HcCCHHHH--------------------------------------------------HHHHHHHHHCCCC
Q 036287 86 AMI-DGLV-RNGEMARA--------------------------------------------------LDLFREMQRDNVR 113 (488)
Q Consensus 86 ~li-~~~~-~~g~~~~A--------------------------------------------------~~~~~~m~~~g~~ 113 (488)
.|+ ..|. +-+..+++ ++.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 111 1222 12333333 33333333322 1
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--C----------
Q 036287 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER--D---------- 181 (488)
Q Consensus 114 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~---------- 181 (488)
-|+.....+.--++..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.+...+. +
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 1111111222223445556666666666655544555555555555556666666666555443320 0
Q ss_pred -----------HHHHHHHHHHHH------h-----------------cCChhHHHHHHHHHH--------HcC-------
Q 036287 182 -----------VTTYNSLIAGLA------M-----------------HGRSIEAVEMFREMI--------NQG------- 212 (488)
Q Consensus 182 -----------~~~~~~li~~~~------~-----------------~g~~~~A~~l~~~m~--------~~g------- 212 (488)
..+...++..+- + .++..+|.+..+++. ..|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 011111111111 0 001111111111110 000
Q ss_pred --C--CCCH------HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036287 213 --I--RPTK------VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI 281 (488)
Q Consensus 213 --~--~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 281 (488)
+ .|+. ..+......+...+..++|...+.+... -.+.....|......+...|.+++|.+.|... -+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0 0111 0122233445555666666665555542 22233556666667788889999999988776 67
Q ss_pred CCC-HHHHHHHHHHHHHhCChhHHHH--HHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 282 APD-HIMLGSLLSACKIHGKLQLGEQ--IAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 282 ~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.|+ +.+..++...+...|+...|.. ++..+++.+|.++.+|..|+.++-+.|+.++|.+.|....+.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 776 7788999999999999998888 999999999999999999999999999999999999987664
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=1.5e-07 Score=93.31 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-------------CcccCh--hhHHHHHHHHHh
Q 036287 201 AVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-------------GIEPQI--EHYGCIVDLLSR 265 (488)
Q Consensus 201 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~li~~~~~ 265 (488)
+...+..+...|+++ +|+.|-..|......+-..+++....... .-+|+. .++..+...|..
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 444555566666654 45555555555444444444443332110 112333 345667888889
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 266 VGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.|++++|++++++. ...|+ +..|..-...+...|++++|...++.+.++++.|...-.-.+..+.++|+.++|.++..
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999876 66676 66777788888999999999999999999998887666677788889999999999998
Q ss_pred HHHhCCC
Q 036287 344 KMKEAGV 350 (488)
Q Consensus 344 ~m~~~g~ 350 (488)
.....+.
T Consensus 287 ~Ftr~~~ 293 (517)
T PF12569_consen 287 LFTREDV 293 (517)
T ss_pred hhcCCCC
Confidence 8877665
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=2.5e-06 Score=82.60 Aligned_cols=258 Identities=12% Similarity=0.042 Sum_probs=133.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 89 DGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
..+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+... ....+........+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHc
Confidence 34555666777777766666542 223323321 111222 23333333333331 111122233334455566677
Q ss_pred CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCCHHHHHH
Q 036287 165 GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPTK--VTFVGVLNACSHGGLVDLGFE 238 (488)
Q Consensus 165 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 238 (488)
|++++|...+++..+ .+...+..+...|...|++++|...+++...... .|+. ..+..+...+...|+.++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777766553 2345566666667777777777777776665321 1222 223345566667777777777
Q ss_pred HHHhcccccCcccChhhH-H--HHHHHHHhcCChHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHHhCChhHHHHHH
Q 036287 239 IFQSMTRDYGIEPQIEHY-G--CIVDLLSRVGRPEEAYDF---ITNM-KIAP---DHIMLGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~ 308 (488)
+++.........+..... + .++.-+...|....+.++ .... +..| ..........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777664221111111111 1 222333334433333222 1111 1101 1122234556667778888888888
Q ss_pred HHHHhcC-C--------CCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 309 KRLLDCR-S--------ADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 309 ~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+.+.... . ..........-++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8876632 1 122344455667789999999999999887654
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=3e-08 Score=91.52 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=80.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH----HHHhcCCh
Q 036287 194 MHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD----LLSRVGRP 269 (488)
Q Consensus 194 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~ 269 (488)
..|++++|++++.+- .+.......+..+...++++.|.+.++.|.+ +..| .+...|.. .+.-.+.+
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhH
Confidence 345555555544321 2233333344455555555555555555542 1222 12222222 22223456
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 036287 270 EEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW-KEAVQIRAKMK 346 (488)
Q Consensus 270 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 346 (488)
.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 7777777777 34456677777777777778888888888887777777777777777777777776 55666777665
Q ss_pred h
Q 036287 347 E 347 (488)
Q Consensus 347 ~ 347 (488)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.94 E-value=9.9e-06 Score=79.04 Aligned_cols=127 Identities=9% Similarity=-0.021 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLV 92 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 92 (488)
..+.....-.+...|+-++|....+.....+ +.+.|..+.-.+....++++|++.|.... ..|...|.-+.-.-+
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI 120 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3333333334445677777777666554422 46777777777777777777777777643 223444444444444
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 145 (488)
+.|+++.....-.++.+.. +-....|.....+.--.|+...|..+.+...+.
T Consensus 121 QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555544444444431 222334444444444555555555555555443
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=9.4e-08 Score=81.42 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHH
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLL 263 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 263 (488)
...+.-+|.+.|+...|..-+++.++.. +.+..++..+...|...|..+.|.+.|+... .+.|+ ..+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 3345556666666666666666666631 2233455555666666666777766666665 33443 45666666667
Q ss_pred HhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHH
Q 036287 264 SRVGRPEEAYDFITNMKIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 339 (488)
+..|++++|.+.|++.-..|+ ..+|..+.-...+.|+.+.|...+++.++.+|..+.+...+.....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777776622222 5677777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCC
Q 036287 340 QIRAKMKEAGV 350 (488)
Q Consensus 340 ~~~~~m~~~g~ 350 (488)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 88877766544
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=1.7e-06 Score=85.84 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=69.2
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH 298 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 298 (488)
-+...|.+.|+.++|+++++..++. .|+ +..|..-...|-..|++.+|.+.++.. ...+ |-.+-+.....+.+.
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 3344455666666666666666632 344 556666666666666666666666655 2222 344444455555666
Q ss_pred CChhHHHHHHHHHHhcC--CCCc-----hhH--HHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 299 GKLQLGEQIAKRLLDCR--SADS-----GTY--VLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~--p~~~-----~~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|++++|.+.+......+ |... -.| .-.+.+|.+.|++..|++-|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66676666666654433 1110 011 2345677777777777766655543
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=4.6e-08 Score=93.71 Aligned_cols=219 Identities=13% Similarity=0.065 Sum_probs=177.2
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHH
Q 036287 126 CSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 202 (488)
+.+.|++.+|.-.|+..++.. +.+...|.-|....+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999999998886 56788999999999999999999999988775 35677778888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHH
Q 036287 203 EMFREMINQGIR--------PTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYD 274 (488)
Q Consensus 203 ~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 274 (488)
..++..+....+ ++..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988764211 01000000 12222334555667777776655666888999999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 275 FITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 275 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.|+.. .++|+ ..+||.|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99988 77785 789999999999999999999999999999999999999999999999999999999877654
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=8.4e-06 Score=73.56 Aligned_cols=298 Identities=14% Similarity=0.137 Sum_probs=214.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHH---HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH---HHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVM---INCYVEHGLVENAFEVFSRVKVKDTVCWTAM---IDG 90 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~l---i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~ 90 (488)
++.----|.+.+...|++.+|+.-|....+-+ +..|.++ ...|...|+-..|+.-|++..+..+..+.+- ...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34444556777788899999999998888766 6666665 4578888888888888887763333333332 346
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC------------CH--HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 91 LVRNGEMARALDLFREMQRDNVRP------------NE--VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p------------~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.++|++++|..=|+..++..... -. ......+..+...|+...++.....+++.. +.|...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 789999999999999998864211 11 112334556677889999999999988875 668888888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----HHHH---H--
Q 036287 157 LINMYSRCGDIDKALQVFEEMK---ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT----FVGV---L-- 224 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~l---l-- 224 (488)
-..+|...|++..|+.-++... ..+....--+-..+...|+.+.++...++-++ +.||.-. |..| .
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999987665544 45667777777888899999999999999887 5677632 2111 1
Q ss_pred ----HHHhccCCHHHHHHHHHhcccccCcccC-----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036287 225 ----NACSHGGLVDLGFEIFQSMTRDYGIEPQ-----IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLS 293 (488)
Q Consensus 225 ----~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 293 (488)
......+.+.++.+-.+...+. .|. ...+..+-.+|...|++.+|++...+. .+.|| +.++.-=..
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 1123445666666666665532 333 234455667778889999999888776 66675 778888888
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 294 ACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 294 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
+|.....++.|+.-|+.+.+.+++|..+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 8888889999999999999998887543
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=9.6e-07 Score=75.39 Aligned_cols=189 Identities=14% Similarity=0.090 Sum_probs=119.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGG 231 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 231 (488)
.|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|..+.|.+.|++.... .| +....|....-++..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 3555667777777777777766643 2346666777777777777777777776663 33 3344455555556666
Q ss_pred CHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 232 LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
.+++|.+.|+.....-....-..+|..+.-+-.+.|+++.|.+.|++. ...|+ ..+...+.......|++-.|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 777777777776654222223456666666666777777777777665 33443 4555666666667777777777777
Q ss_pred HHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 310 RLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 310 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
......+.+.......+..-...|+-+.+-+.=..+.
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7766666666666666666667777666665544443
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=3e-07 Score=84.94 Aligned_cols=226 Identities=15% Similarity=0.124 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC-CcHhHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID-LNHIVGGALINMY 161 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y 161 (488)
...-+.++|...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+......+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 44456667777777665443 332322 555555555544444333444444333333322222 2334444445667
Q ss_pred HhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHH
Q 036287 162 SRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH----GGLVDLGF 237 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 237 (488)
...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 7778888888777765 45666666777888888888888888888763 333 344444444332 34578888
Q ss_pred HHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCh-hHHHHHHHHHHhc
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKL-QLGEQIAKRLLDC 314 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 314 (488)
.+|+++.. ...+++.+.+.+.-+....|++++|.+++++. ...| ++.+...++......|+. +.+.+.+.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 88888775 34567777888888888888888888888775 4344 356666777777777776 6677788888877
Q ss_pred CCCCc
Q 036287 315 RSADS 319 (488)
Q Consensus 315 ~p~~~ 319 (488)
.|..+
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 77664
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=6.1e-06 Score=79.86 Aligned_cols=291 Identities=10% Similarity=0.016 Sum_probs=179.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCCC--ce---eeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHH
Q 036287 19 STRLKLVELYGKCGEFKDAMQLFDEMPECN--DV---VASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDG 90 (488)
Q Consensus 19 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~---~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 90 (488)
..+..+...|...|+.+.|.+.+....... +. .........+...|++++|.+.+++.. +.|...++. ...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 345566677777888888766666543311 11 223333455678899999999998765 335555553 223
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 91 LVR----NGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 91 ~~~----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
+.. .+....+.+.+.. .....|+ ......+...+...|++++|...++...+.. +.+...+..+...|...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 333 3445555555544 1222343 3444456677889999999999999999876 556778888999999999
Q ss_pred CHHHHHHHHHhcccC-----CH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhccCCHH
Q 036287 166 DIDKALQVFEEMKER-----DV--TTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPTKVTF-V--GVLNACSHGGLVD 234 (488)
Q Consensus 166 ~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~ 234 (488)
++++|...+++..+. +. ..|..+...+...|++++|+.+|++...... .+..... . .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999986641 22 2456788889999999999999999865322 1222221 1 2233333444333
Q ss_pred HHHHH---HHhcccc-cCcccChhhHHHHHHHHHhcCChHHHHHHHHhCC--CCC---C----HHHHHHHHH--HHHHhC
Q 036287 235 LGFEI---FQSMTRD-YGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMK--IAP---D----HIMLGSLLS--ACKIHG 299 (488)
Q Consensus 235 ~a~~~---~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p---~----~~~~~~ll~--~~~~~g 299 (488)
.+.+. ....... .+ ..........+.++...|+.++|..+++.+. ... . ..+-..++. ++...|
T Consensus 243 ~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 243 VGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred hHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 33332 1111110 01 1111222245667778999999999998871 111 1 112222333 446789
Q ss_pred ChhHHHHHHHHHHhc
Q 036287 300 KLQLGEQIAKRLLDC 314 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~ 314 (488)
+.+.|...+...+..
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888764
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4e-05 Score=74.18 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=84.7
Q ss_pred HHHHHHHhccCCHHHHHHHHH--------hcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC
Q 036287 221 VGVLNACSHGGLVDLGFEIFQ--------SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--------KIAPD 284 (488)
Q Consensus 221 ~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~ 284 (488)
...+..-...|+++.|.+++. .+.+ +.-.+.+...++..|.+.++-+.|..++.+. .-.+.
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 334445667788999988888 4432 2333455667788888888777676666654 11121
Q ss_pred -HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 285 -HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 285 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
..+|.-+...-.++|+.++|..+++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 233444444446779999999999999999999999999999999887 667777765443
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.80 E-value=1.6e-05 Score=77.51 Aligned_cols=335 Identities=15% Similarity=0.197 Sum_probs=189.7
Q ss_pred HHHHhCCC--Cc--hhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-ceeeHHHHHHHHHHc----------------C--
Q 036287 8 QVLKLGLR--SN--RSTRLKLVELYGKCGEFKDAMQLFDEMPECN-DVVASTVMINCYVEH----------------G-- 64 (488)
Q Consensus 8 ~~~~~g~~--~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~~li~~~~~~----------------g-- 64 (488)
.+++.|+. +| .++|++|.+-|.+.|.++.|..+|++....- ++.-++.+-+.|++- |
T Consensus 234 aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 234 AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNE 313 (835)
T ss_pred HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccCh
Confidence 34455543 23 4579999999999999999999998765532 233445555555211 1
Q ss_pred ----CHHHHHHHHhhcC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 036287 65 ----LVENAFEVFSRVK---------------VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN------EVTI 119 (488)
Q Consensus 65 ----~~~~A~~~f~~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~ 119 (488)
+++-...-|+.+. ..++..|..-.. ...|+..+-...|.+..+. +.|. ...|
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw 390 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLW 390 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHH
Confidence 2222333344332 113334443332 2356677777777777653 2221 2456
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccc-----------------
Q 036287 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLN---HIVGGALINMYSRCGDIDKALQVFEEMKE----------------- 179 (488)
Q Consensus 120 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------------- 179 (488)
..+.+.|-+.|+++.|+.+|+...+..++.- ..+|..-.++=.+..+++.|+++.+....
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 6677777777888888888877777654432 45666666777777777777777665431
Q ss_pred ----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----------------------------------CCCCHH-HH
Q 036287 180 ----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG----------------------------------IRPTKV-TF 220 (488)
Q Consensus 180 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------------------------------~~p~~~-t~ 220 (488)
++...|...++.--..|-++....+|+++.+.. ..|+.. .|
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 122345444444444454444444444444322 123321 12
Q ss_pred HHHHHHH---hccCCHHHHHHHHHhcccccCcccChhh--HHHHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHH
Q 036287 221 VGVLNAC---SHGGLVDLGFEIFQSMTRDYGIEPQIEH--YGCIVDLLSRVGRPEEAYDFITNM--KIAPD--HIMLGSL 291 (488)
Q Consensus 221 ~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~l 291 (488)
+.-|.-+ .....++.|..+|++..+ +.+|...- |-.....=-+-|....|+.++++. ++++. ...|+..
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222211 122357888888888875 66654221 111122222457777788888877 34432 4567766
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCCch--hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSADSG--TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|.-....=-+.....+++++++.-|++.. ...-...+-.+.|..+.|..++.--.+
T Consensus 629 I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 66444444455667788888887665432 222345566788999999999876544
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.80 E-value=2.2e-05 Score=76.60 Aligned_cols=319 Identities=16% Similarity=0.180 Sum_probs=164.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC----CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE----CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 96 (488)
|-..+....+.|++...+..|++... ......|...+.-....|-.+-+..++++-..-++..-+--|..+...++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 34444455566666666666665433 11244566666666666666666666666555555555556666666666
Q ss_pred HHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCchHHH---HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 036287 97 MARALDLFREMQRDN------VRPNEVTIVCVLSACSQLGALELG---RWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 167 (488)
+++|-+.+...+... .+.+...|..+-...++..+.-.. ..++..++..-.+.-...|++|.+-|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 666666665543211 122333333333333332222211 11222221111111134556666666666666
Q ss_pred HHHHHHHHhcccC-------------------------------------------------------------------
Q 036287 168 DKALQVFEEMKER------------------------------------------------------------------- 180 (488)
Q Consensus 168 ~~A~~~~~~~~~~------------------------------------------------------------------- 180 (488)
++|..+|++....
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 6666665543321
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 181 ---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK------VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 181 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++..|..-+. ...|+..+-...|.+..+. +.|-. ..+..+...|-..|+++.|..+|++..+. ..+.
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~ 420 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKT 420 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-Cccc
Confidence 1112222211 1234555566666666553 33322 23566677777888888888888877642 2111
Q ss_pred C---hhhHHHHHHHHHhcCChHHHHHHHHhC---CCCC-----------------CHHHHHHHHHHHHHhCChhHHHHHH
Q 036287 252 Q---IEHYGCIVDLLSRVGRPEEAYDFITNM---KIAP-----------------DHIMLGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 252 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-----------------~~~~~~~ll~~~~~~g~~~~a~~~~ 308 (488)
- ..+|-.-.++=.+..+++.|.++++.. |-+| +..+|..++..--..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 345555556666777788888877776 2111 1344555555555566667777777
Q ss_pred HHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 309 KRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 309 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
++++++.--.|......+..+-...-++++.++++
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77776653333333333333444444556655554
No 87
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.3e-08 Score=60.35 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=31.4
Q ss_pred hCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 036287 12 LGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMP 45 (488)
Q Consensus 12 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 45 (488)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999885
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=7.2e-06 Score=74.25 Aligned_cols=120 Identities=11% Similarity=0.192 Sum_probs=80.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---------------CHHHH--
Q 036287 24 LVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKVK---------------DTVCW-- 84 (488)
Q Consensus 24 li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------------~~~~~-- 84 (488)
+...|.+.|++++|..++.-+.+++ +...|-.|.-++.-.|.+.+|..+-.+.+.. |..-|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 5567778999999999998876643 4677888888888888888888887766521 11111
Q ss_pred ------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCchHHHHHHHHHHHHc
Q 036287 85 ------------TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA-CSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 85 ------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~ 145 (488)
-+|.+...-.-.+++|+++|.+.+..+ |+-...+.-+.. |.++.-++.+.++++-..+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 123333333446889999999988753 555555554443 45666677777777665554
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=3.9e-06 Score=74.25 Aligned_cols=301 Identities=18% Similarity=0.178 Sum_probs=173.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHH-HHHHHHHHcC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVK--VKDTVCWT-AMIDGLVRNG 95 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~-~li~~~~~~g 95 (488)
+++.+.-+.+..++++|.+++..-.+++ +....+.|..+|....++..|-..++++. .|...-|. --...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 4555555667777778877776655543 34556667777777777777777777765 23222222 1234556677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036287 96 EMARALDLFREMQRDNVRPNEVTIVCVLSAC--SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQV 173 (488)
Q Consensus 96 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 173 (488)
.+.+|+++...|... |+...-..-+.+. ...+++..++.+.++....| +..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 777777777766542 2222211122221 23455556666655554322 233333344445566777777777
Q ss_pred HHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCc
Q 036287 174 FEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGI 249 (488)
Q Consensus 174 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 249 (488)
|+...+ .....||..+. ..+.|++..|+++..++++.|++.... ++ -|..-++.. .+.+ |
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiD-vrsv----g- 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGID-VRSV----G- 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCc-hhcc----c-
Confidence 766654 23455655443 334566777777777777766543221 00 000000000 0000 0
Q ss_pred ccChhhHHHHH-------HHHHhcCChHHHHHHHHhCCC----CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 250 EPQIEHYGCIV-------DLLSRVGRPEEAYDFITNMKI----APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 250 ~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
.|-.-+-+.++ ..+.+.|+++.|.+.+..||- ..|++|...+.-. -..+++-.+..-++-+++.+|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 01112223333 345678999999999999942 3467776655322 23456777778888888888888
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
+.||..++-.|++..-++-|.+++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88999999999999999998888764
No 90
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=1.1e-06 Score=92.29 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=167.7
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 036287 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMKER--------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT 219 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 219 (488)
|.+...|-..+......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+. .-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667777788888899999999999887641 2357889988888889888899999999874 222345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP---DHIMLGSLLSAC 295 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 295 (488)
|..|...|...+..++|-++++.|.++++ -...+|...++.+.+..+-+.|..++++. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888999999999999999999998766 66788999999999999999999999886 3233 455566666777
Q ss_pred HHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCcc
Q 036287 296 KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
.+.|+.+++..+|+..+...|.....|..++++-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999999887753
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=3.1e-05 Score=69.99 Aligned_cols=290 Identities=13% Similarity=0.109 Sum_probs=211.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhc
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMI---DGLVRNGEMARALDLFREMQRDNVRPNEVTIV-CVLSACSQL 129 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~ 129 (488)
--+.+.+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=|.+.++ ++||-..-. .-.....+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 34667788889999999999998887777776665 578999999999999999888 478754332 234456789
Q ss_pred CchHHHHHHHHHHHHcCCCC--cHhHH------------HHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDL--NHIVG------------GALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGL 192 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~--~~~~~------------~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 192 (488)
|.+++|..=|..+++..... ...++ ...+..+.-.|+...|+.....+.+- |+..+..-..+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 99999999999998875311 11111 12234456678999999888887763 677788888899
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh----hHHHH---H-----
Q 036287 193 AMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE----HYGCI---V----- 260 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---i----- 260 (488)
...|.+..|+.=++..-+.. .-+..++..+-..+...|+.+.++...+... .+.||-. +|-.| +
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999998887776642 3345566667777888899999988888776 4566632 22211 1
Q ss_pred -HHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC
Q 036287 261 -DLLSRVGRPEEAYDFITNM-KIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333 (488)
Q Consensus 261 -~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 333 (488)
......+++.++.+-.+.. ...|. ...+..+-..+...+++-+|++...++++.+|+|..++---..+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1123345666666555544 44554 2233445556677899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 036287 334 KWKEAVQIRAKMKEAG 349 (488)
Q Consensus 334 ~~~~a~~~~~~m~~~g 349 (488)
.+++|+.=|+...+.+
T Consensus 356 ~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999988876643
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=3.8e-05 Score=84.15 Aligned_cols=322 Identities=11% Similarity=0.013 Sum_probs=200.1
Q ss_pred HHhcCChHHHHHHHhhCCCC---CceeeHHHHHHHHHHcCCHHHHHHHHhhcC----CC------CH--HHHHHHHHHHH
Q 036287 28 YGKCGEFKDAMQLFDEMPEC---NDVVASTVMINCYVEHGLVENAFEVFSRVK----VK------DT--VCWTAMIDGLV 92 (488)
Q Consensus 28 y~~~g~~~~A~~~~~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~------~~--~~~~~li~~~~ 92 (488)
....|+++.+...++.++.. .++.........+...|++++|...++... .. .. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 33456666666666665421 123333344455567788888888776542 11 11 12222334566
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHc----CC-CCcHhHHHHHHHHHHh
Q 036287 93 RNGEMARALDLFREMQRDNVRPNE----VTIVCVLSACSQLGALELGRWIHSYMGKH----RI-DLNHIVGGALINMYSR 163 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~ 163 (488)
..|++++|...+++....-...+. ...+.+...+...|+++.|...+...... |- .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999887763111222 23344555667789999998888877643 21 1112344566777888
Q ss_pred cCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHh
Q 036287 164 CGDIDKALQVFEEMKE-------R----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQG--IRPT--KVTFVGVLNACS 228 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~a~~ 228 (488)
.|+++.|...+++..+ + ....+..+...+...|++++|...+++..... ..+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999888876543 1 12234455556777899999999988876521 1122 223334455677
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHY-----GCIVDLLSRVGRPEEAYDFITNMKIA--PDH----IMLGSLLSACKI 297 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~ 297 (488)
..|+.++|...+.....-.........+ ...+..+...|+.+.|.+++...... ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999988887774311111111111 11224455688999999988776211 111 123456677888
Q ss_pred hCChhHHHHHHHHHHhcC------CCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 298 HGKLQLGEQIAKRLLDCR------SADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.|+.++|...++++.+.. +....++..+..+|...|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999987742 1123467778889999999999999999987654
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.67 E-value=5.2e-05 Score=74.17 Aligned_cols=326 Identities=13% Similarity=0.132 Sum_probs=212.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHc
Q 036287 20 TRLKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKV---KDTVCWTAMIDGLVRN 94 (488)
Q Consensus 20 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 94 (488)
.+..++..|- .+++...+++.+.+..+. ...+.....-.+...|+-++|......-.. ++.+.|..+.-.+...
T Consensus 10 lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 4555666663 456666666555554422 233444444455778999999998877653 4568899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
.++++|++.|......+ +-|...+.-+.-.-++.++++........+.+.. +.....|..++-++.-.|+...|..+.
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999865 4456667666666678888888877777776653 334556777777777788888887776
Q ss_pred Hhccc-----CCHH----------------------------------------HHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 175 EEMKE-----RDVT----------------------------------------TYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 175 ~~~~~-----~~~~----------------------------------------~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
++..+ ++.. .-.+....+.+.++.++|..++..++
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 65432 1111 11223445777889999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHh--ccCCHHHHHHHHHhcccccCc--cc-----C-----------------------hhhHH
Q 036287 210 NQGIRPTKVTFVGVLNACS--HGGLVDLGFEIFQSMTRDYGI--EP-----Q-----------------------IEHYG 257 (488)
Q Consensus 210 ~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~--~p-----~-----------------------~~~~~ 257 (488)
.. .||...|...+..+. -.+..+....+|....+.+.. .| + +.++.
T Consensus 247 ~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 247 ER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred hh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 84 688877776665544 233333333666665543211 11 0 11112
Q ss_pred HHHHHHHhcCChHH----HHHHHHhC-C------------CCCCHHHHHH--HHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 258 CIVDLLSRVGRPEE----AYDFITNM-K------------IAPDHIMLGS--LLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 258 ~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
.+...|-.-...+- +..+...+ + .+|....|.. +...+-..|+++.|...++.+++.-|.-
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl 404 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL 404 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH
Confidence 22222211111110 11111111 1 2566666654 5667788899999999999999988888
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
+..|..-+.++...|+.++|...+++..+.+.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 88888889999999999999999998877654
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=2.1e-06 Score=77.71 Aligned_cols=182 Identities=13% Similarity=0.007 Sum_probs=118.2
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHH
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKE--RD-V---TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK--VTF 220 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~ 220 (488)
.....+..+...|.+.|+++.|...|+++.. |+ . .+|..+..+|.+.|++++|+..|+++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455666777778888888888888887654 22 1 35677777888888888888888888764221111 133
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHhcccccCcccChh-hHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 036287 221 VGVLNACSHG--------GLVDLGFEIFQSMTRDYGIEPQIE-HYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSL 291 (488)
Q Consensus 221 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 291 (488)
..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... .. ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---HHHHH-----------HHHHHHH
Confidence 3344444433 5677777777777643 33321 22111111 00 00000 0111245
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...+...|+++.|...++++++..|.+ +..+..++.+|...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567888999999999999999986654 468899999999999999999999888654
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=6.1e-05 Score=72.96 Aligned_cols=307 Identities=14% Similarity=0.184 Sum_probs=148.5
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC--CceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH----HHHHHHcCCHH
Q 036287 25 VELYGKCGEFKDAMQLFDEMPEC--NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAM----IDGLVRNGEMA 98 (488)
Q Consensus 25 i~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~~~ 98 (488)
++.+.+.|++++|.+.-+++... ++..+...-+-+..+.+++++|+.+.+.-... .+++.. .-+..+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 44555556666666655555442 33444444445555555555555444332211 111111 11223445555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC----------------------------C
Q 036287 99 RALDLFREMQRDNVRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKHRID----------------------------L 149 (488)
Q Consensus 99 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----------------------------~ 149 (488)
+|+..++ |..+ |..+...-...|.+++++++|..+|+.+.+++.+ |
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 5555544 1111 1223333344445555555555555555443321 1
Q ss_pred --cHhHHHHHHHHHHhcCCHHHHHHHHHhcc--------cCC-----HH-----HHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 150 --NHIVGGALINMYSRCGDIDKALQVFEEMK--------ERD-----VT-----TYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 150 --~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+-..+......+...|++.+|+++++... +.| +. .--.|.-.+-..|+.++|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 11122223445667788888888887762 111 11 12223344566788888888888877
Q ss_pred HcCCCCCHHHH----HHHHHHHhccCC-HH-HHHHHHHhccccc----------CcccChhhHHHHHHHHHhcCChHHHH
Q 036287 210 NQGIRPTKVTF----VGVLNACSHGGL-VD-LGFEIFQSMTRDY----------GIEPQIEHYGCIVDLLSRVGRPEEAY 273 (488)
Q Consensus 210 ~~g~~p~~~t~----~~ll~a~~~~g~-~~-~a~~~~~~~~~~~----------~~~p~~~~~~~li~~~~~~g~~~~A~ 273 (488)
..+ .+|.... |.|+ +...-.. ++ .++..++...... .-.-...--++++.+|. +.-+.+.
T Consensus 252 ~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r 327 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVR 327 (652)
T ss_pred Hhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHH
Confidence 763 4444221 2222 2221111 11 1111111111000 00001111123444443 4455666
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHH-Hh-CChhHHHHHHHHHHhcCCCC-chhHHHHHHHHhcCCChHHHHHHHH
Q 036287 274 DFITNMK-IAPDHIMLGSLLSACK-IH-GKLQLGEQIAKRLLDCRSAD-SGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 274 ~~~~~m~-~~p~~~~~~~ll~~~~-~~-g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
++-...+ ..|. ..+..++..+. .. .....+..++....+..|.+ ..+....+......|+|+.|.+++.
T Consensus 328 ~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 328 ELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666663 3343 44445554442 22 24677778888887777877 3455566778899999999999999
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.64 E-value=1.5e-05 Score=78.64 Aligned_cols=287 Identities=17% Similarity=0.215 Sum_probs=148.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC-------------------
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKD------------------- 80 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------------------- 80 (488)
.-+.|+.|.+.|.+..|.++-..=.+ ..+......+..++.+..-+++|-.+|+++..++
T Consensus 618 ~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiela 697 (1636)
T KOG3616|consen 618 GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELA 697 (1636)
T ss_pred cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHH
Confidence 45678999999999888776422111 1113333334444444444444444444443221
Q ss_pred -------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh
Q 036287 81 -------TVC-WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI 152 (488)
Q Consensus 81 -------~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 152 (488)
++. =......+.+.|+++.|+.-|-+... ..-.+.+......+.+|..+++.+..... -..
T Consensus 698 rfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~ 766 (1636)
T KOG3616|consen 698 RFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASG 766 (1636)
T ss_pred HhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccc
Confidence 110 01111222333444444444322211 11223344445566666666666655432 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL 232 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 232 (488)
.|..+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|++++|.++-.+... .......|.+-..-.-..|.
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcc
Confidence 34556667777777777777776532 344556677777777777766555432 22333344444444556677
Q ss_pred HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 036287 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLL 312 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 312 (488)
+.+|.+++-.+. .|+. -|.+|-+.|..+..+++..+-.-.--..|-..+..-+-..|++..|+..|-++
T Consensus 840 f~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea- 908 (1636)
T KOG3616|consen 840 FAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA- 908 (1636)
T ss_pred hhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh-
Confidence 777776665543 2332 35667777777777776666521112344445555566666666666655443
Q ss_pred hcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 313 DCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 313 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.-|..-+++|-.++.|++|.++-+
T Consensus 909 -------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 909 -------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred -------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 234455566666666666655443
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=9.2e-05 Score=75.82 Aligned_cols=319 Identities=16% Similarity=0.185 Sum_probs=210.7
Q ss_pred hHHHHHHHHhCCC--CchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHH-----HHH------------------
Q 036287 3 REIHGQVLKLGLR--SNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVAST-----VMI------------------ 57 (488)
Q Consensus 3 ~~i~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~-----~li------------------ 57 (488)
|++.+++++.+++ .|+.--+.-+.++...+-..+-.++++++.-.+++++-+ .||
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 6888899998874 467777788899999999999999998875543222222 111
Q ss_pred ---------HHHHHcCCHHHHHHHHhhcC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036287 58 ---------NCYVEHGLVENAFEVFSRVK-------------------------VKDTVCWTAMIDGLVRNGEMARALDL 103 (488)
Q Consensus 58 ---------~~~~~~g~~~~A~~~f~~~~-------------------------~~~~~~~~~li~~~~~~g~~~~A~~~ 103 (488)
......+-+++|..+|+... -.....|..+..+-.+.|...+|++-
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHH
Confidence 11145566777777777642 11345799999999999999999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc----
Q 036287 104 FREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---- 179 (488)
Q Consensus 104 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 179 (488)
|-+. -|+..|..++.++.+.|.+++-..++..+.+..-+|.+. +.|+-+|++.+++.+-++.+..-..
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQ 1198 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHH
Confidence 7542 367889999999999999999999999888877666544 5789999999998887665432110
Q ss_pred -------------------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 180 -------------------RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 180 -------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
.++.-|..+...+...|+++.|.+.-++. .+..||..+-.+|...+.+..|.-
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQi-- 1270 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQI-- 1270 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHh--
Confidence 13445666666666677777666655543 234577777777777666554432
Q ss_pred HhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
. -..+.....-..-|+..|-..|.+++-+.+++.. |.+ ..-..|+.|.-.|.+-+ +++..+.++-.-..
T Consensus 1271 ---C-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR---- 1341 (1666)
T KOG0985|consen 1271 ---C-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR---- 1341 (1666)
T ss_pred ---c-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh----
Confidence 1 0122333445567788888888888888888765 443 23455666655555443 44444333333221
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
...--+++++-.+.-|.+..-++..-.+
T Consensus 1342 -vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1342 -VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1122466777777778888777765544
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=8.7e-06 Score=85.72 Aligned_cols=229 Identities=13% Similarity=0.082 Sum_probs=176.7
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-------ceeeHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 036287 6 HGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECN-------DVVASTVMINCYVEHGLVENAFEVFSRVKV 78 (488)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 78 (488)
|+.+++.. +-+...|-..|......++++.|++++++....= -...|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444433 3345668888888889999999999998875521 356899999998889988999999998764
Q ss_pred C-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC-CcHhHHH
Q 036287 79 K-D-TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID-LNHIVGG 155 (488)
Q Consensus 79 ~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~ 155 (488)
- | ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.=.. ..+....
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 3 3 346888999999999999999999999875 3456778888888888989999999999988775311 2455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcc
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK--VTFVGVLNACSHG 230 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~ 230 (488)
-.+.+-.++|+.+.++.+|+.... +-...|+..|..=.++|+.+.+..+|++....++.|-. ..|...|..=...
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc
Confidence 677778899999999999998775 34678999999999999999999999999998877654 4455555544444
Q ss_pred CCHHHH
Q 036287 231 GLVDLG 236 (488)
Q Consensus 231 g~~~~a 236 (488)
|+-+.+
T Consensus 1685 Gde~~v 1690 (1710)
T KOG1070|consen 1685 GDEKNV 1690 (1710)
T ss_pred CchhhH
Confidence 554333
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=8.9e-08 Score=56.75 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=25.8
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 036287 146 RIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 146 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677788888888888888888888888887774
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.59 E-value=0.00029 Score=77.25 Aligned_cols=326 Identities=10% Similarity=-0.020 Sum_probs=201.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCc-eeeHHHHHHHHHHcCCHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCCH
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPECND-VVASTVMINCYVEHGLVENAFEVFSRVKV----KDTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~ 97 (488)
.....|...|++.+|..........+. ..............|+++.+..+++.++. .+..........+...|++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 334445556666666665555544320 00111122334567888888888888751 1222334445566788999
Q ss_pred HHHHHHHHHHHHCC--C----CCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcC
Q 036287 98 ARALDLFREMQRDN--V----RPNE--VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN----HIVGGALINMYSRCG 165 (488)
Q Consensus 98 ~~A~~~~~~m~~~g--~----~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g 165 (488)
++|..++.+....- . .|.. .....+...+...|+++.+...++...+.-...+ ....+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999998875431 0 1111 1122233445678999999999998876321222 134456677788899
Q ss_pred CHHHHHHHHHhccc-------CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhc
Q 036287 166 DIDKALQVFEEMKE-------RD--VTTYNSLIAGLAMHGRSIEAVEMFREMINQ----GIR--P-TKVTFVGVLNACSH 229 (488)
Q Consensus 166 ~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~ll~a~~~ 229 (488)
+++.|...+.+... +. ..++..+...+...|++++|...+++.... +.. | ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999888753 11 234555667788999999999999887652 211 1 12233444555667
Q ss_pred cCCHHHHHHHHHhccccc-Cccc--ChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHH
Q 036287 230 GGLVDLGFEIFQSMTRDY-GIEP--QIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPDHIMLG-----SLLSACKI 297 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~-----~ll~~~~~ 297 (488)
.|++++|...+....... ...+ ....+..+...+...|++++|.+.+... ........+. ..+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 799999999988775321 1112 1334455667788899999998888776 1111111111 12234456
Q ss_pred hCChhHHHHHHHHHHhcCCCCchh----HHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGT----YVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.|+.+.|...+.......+..... +..+..++...|++++|...+++....
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 789999998887765532222211 456788899999999999999987653
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.7e-05 Score=70.34 Aligned_cols=158 Identities=11% Similarity=0.031 Sum_probs=108.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-ceeeHH-HHHHHHHHcCCHHHHHHHHhhcCCC-CHHHHHHHHH--HH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPECN-DVVAST-VMINCYVEHGLVENAFEVFSRVKVK-DTVCWTAMID--GL 91 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~-~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~--~~ 91 (488)
+....+.|...|-...++..|-..++++...- ...-|. .-...+.+.+.+.+|+++...|... +...-..-+. ..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 55667788889999999999999999876622 112221 1235567889999999999998864 3222222222 23
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
.+.+++..+..+.++....| +..+.....-...+.|+.+.|.+-|+...+. |+.| ...||.. -+..+.|+.+.|
T Consensus 123 Yse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniA-LaHy~~~qyasA 197 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLA-LAHYSSRQYASA 197 (459)
T ss_pred cccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHH-HHHHhhhhHHHH
Confidence 45688888888888765433 4445555544557889999999999998875 4554 4455543 445567999999
Q ss_pred HHHHHhccc
Q 036287 171 LQVFEEMKE 179 (488)
Q Consensus 171 ~~~~~~~~~ 179 (488)
++...++.+
T Consensus 198 Lk~iSEIie 206 (459)
T KOG4340|consen 198 LKHISEIIE 206 (459)
T ss_pred HHHHHHHHH
Confidence 999888775
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.8e-05 Score=72.34 Aligned_cols=322 Identities=16% Similarity=0.122 Sum_probs=184.9
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCC-HHHHHHHHHHHHHcCCHHHH
Q 036287 26 ELYGKCGEFKDAMQLFDEMP--ECNDVVASTVMINCYVEHGLVENAFEVFSRVK--VKD-TVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 26 ~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A 100 (488)
++.+..|+++.|...|.... .+++.+.|+.-..+|.+.|++++|++--.+-. .|+ ...|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 34456788888888887643 34467778888888888888888776555443 232 34677777788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C---------------------------------------------ch
Q 036287 101 LDLFREMQRDNVRPNEVTIVCVLSACSQL---G---------------------------------------------AL 132 (488)
Q Consensus 101 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~---------------------------------------------~~ 132 (488)
+.-|.+-++.. +.|...+..+..++... + +.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 88887766643 33444455555444111 0 00
Q ss_pred HHHHHHHHHHHHc--------C-------CCC------------cH----------hHHHHHHHHHHhcCCHHHHHHHHH
Q 036287 133 ELGRWIHSYMGKH--------R-------IDL------------NH----------IVGGALINMYSRCGDIDKALQVFE 175 (488)
Q Consensus 133 ~~a~~~~~~~~~~--------g-------~~~------------~~----------~~~~~li~~y~~~g~~~~A~~~~~ 175 (488)
....+.+..+... | ..| |. .-...|.++.-+..+++.|.+.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0011111111000 0 000 00 001223333444444455554444
Q ss_pred hccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHhccCCHHHHHHHHHhccccc
Q 036287 176 EMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP--T----KVTFVGVLNACSHGGLVDLGFEIFQSMTRDY 247 (488)
Q Consensus 176 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 247 (488)
...+ .++.-++....+|...|.+.+....-....+.|-.- + ...+..+..++...++.+.+..+|.+....+
T Consensus 249 ~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 249 KALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 4332 222334444555666666655555555444433110 0 0112223335555666777777776655432
Q ss_pred CcccChhh-------------------------HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 036287 248 GIEPQIEH-------------------------YGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK 300 (488)
Q Consensus 248 ~~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 300 (488)
..|+... ...-...+.+.|++.+|+..+.++ ...| |...|..-.-+|.+.|+
T Consensus 329 -Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 329 -RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE 407 (539)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh
Confidence 2222111 011133456678888888888887 4445 57778888888888888
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+..|.+-.+..++++|+....|..-+.++....+|++|.+.|.+-.+.+
T Consensus 408 ~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 408 YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888776543
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=3.7e-06 Score=83.02 Aligned_cols=216 Identities=13% Similarity=0.048 Sum_probs=111.5
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHHH
Q 036287 14 LRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK--VKDTVCWTAMIDGL 91 (488)
Q Consensus 14 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~ 91 (488)
++|-...-..+...+..+|-...|..+|++ ...|.-.|.+|...|+..+|..+..+.. +||...|..+.+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhc
Confidence 344444455556666666666666666654 3445556666666666666665554433 34455555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
...--+++|.++++..-.. .-..+.....+.++++++.+.++...+.. +....+|..+..++.++++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 5555555666555443221 01111111122455555555555555443 333445555555566666666666
Q ss_pred HHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 172 QVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 172 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
+.|..... | +..+||.+-.+|.+.|+-.+|...+.+..+.+.. +-..+-..+....+.|.+++|.+.+.++.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 66655442 2 3355666666666666666666666666555422 22222223333445556666665555554
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=7.8e-06 Score=71.34 Aligned_cols=118 Identities=9% Similarity=0.126 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHhCC--hhHH
Q 036287 230 GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSAC-KIHGK--LQLG 304 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 304 (488)
.++.+++...+....+ .-+.+...|..|...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666553 23445777888888888888888888888877 5555 466777777654 56666 4888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
..+++++++.+|.++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888887643
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=6.9e-06 Score=81.20 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=160.4
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 146 RIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 146 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
+++|-......+...+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 35666777788999999999999999999975 4788899999999999999999998887 5899999999999
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhH
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQL 303 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 303 (488)
..-...-+++|.++++..... .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888899999998876642 1111222233478999999988865 5555 47889999888899999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 304 GEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 304 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
|.+.|.....++|++...|+.+..+|.+.|+-.+|...+++..+.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988774
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=4.9e-05 Score=79.46 Aligned_cols=234 Identities=10% Similarity=0.087 Sum_probs=139.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRN 94 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 94 (488)
+...+..|+..|-..+++++|.++.+...+ ++....|-.+...+.+.++.++|..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 344566777777777777777777765444 23344455554555666654444443 334444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
.++.-...++..|... .-+...+..+..+|-++|+.+++.++++++++.. +.|+.+.|.+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4554444444455442 2345577777888888888888888888888877 66777888888888888 888888877
Q ss_pred HhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHhcccccCcccCh
Q 036287 175 EEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF-VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQI 253 (488)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 253 (488)
.+.. ..|...+++.++.++|.++... .|+...+ ..++.. +....+..--+
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~k----------------i~~~~~~~~~~ 223 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERK----------------VLGHREFTRLV 223 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHH----------------HHhhhccchhH
Confidence 6643 2366677888888888888774 3443332 222222 21111212223
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACK 296 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 296 (488)
.++--+...|....+++++.++++.+ ...| |.....-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34445556666667777777777766 4333 3444455555554
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=1e-05 Score=78.08 Aligned_cols=244 Identities=13% Similarity=0.066 Sum_probs=164.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
+.++|+..+|.-.|+...+.+ |-+...|.-|...-+..++-..|+..+.+..+.. +.+..+.-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456777777777777776664 3355666666666666667777777777777665 44566666677777777777777
Q ss_pred HHHHHhccc-CCHHHHHHHH---------HHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 171 LQVFEEMKE-RDVTTYNSLI---------AGLAMHGRSIEAVEMFREMIN-QGIRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~li---------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
.+.|+.=.. .-...|...- ..+..........++|-++.. .+..+|......|.-.|--.|.+++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 777665321 0000000000 111112223455666666654 34346666777777778888999999999
Q ss_pred HHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 240 FQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 240 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
|+.+. .+.|+ ...||-|...++...+-++|+..|++. .++|+ +.++..|.-+|...|.+++|.+.|-.++.+.+
T Consensus 453 f~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99998 44665 788999999999999999999999988 88888 67888899999999999999999988887543
Q ss_pred C-----C-----chhHHHHHHHHhcCCChHHHH
Q 036287 317 A-----D-----SGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 317 ~-----~-----~~~~~~l~~~~~~~g~~~~a~ 339 (488)
. . ...|..|=.++.-.++.|-+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 2 1 134555555555555555333
No 108
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=7.7e-05 Score=70.01 Aligned_cols=231 Identities=12% Similarity=0.051 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-chHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQLG-ALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
++..+-..+...+..++|+.++.++++. .|+ ..+|...-.++...+ +++++...+..+.+.. +.+..+|+...-+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 5666667777788889999999888875 344 345555555555666 5678888888777765 3455566655555
Q ss_pred HHhcCCH--HHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 161 YSRCGDI--DKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 161 y~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
+.+.|+. +++..+++++.+ +|..+|+.....+...|+++++++.++++++.+.. |...|+.....+.+.+..
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l-- 192 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLL-- 192 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccc--
Confidence 5555542 556666666554 45667777777777777777888888777775433 233333332222221100
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh----CChhHHHHHHH
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH----GKLQLGEQIAK 309 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~ 309 (488)
. +. ....+++.+...++ ...| |...|+.+...+... ++..+|...+.
T Consensus 193 --------~---~~----------------~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 193 --------G---GL----------------EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred --------c---cc----------------cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 0 00 00123344444332 3344 466677776666653 33456777777
Q ss_pred HHHhcCCCCchhHHHHHHHHhcCC------------------ChHHHHHHHHHHH
Q 036287 310 RLLDCRSADSGTYVLLSNAYASSG------------------KWKEAVQIRAKMK 346 (488)
Q Consensus 310 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 346 (488)
++.+.+|.++.+...|+..|.... ..++|.++++.+.
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 877777888888888888887642 2366888888773
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=1.9e-05 Score=71.48 Aligned_cols=182 Identities=13% Similarity=0.023 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC-C-cHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CH---HHH
Q 036287 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID-L-NHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DV---TTY 185 (488)
Q Consensus 114 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~ 185 (488)
.....+......+...|+++.|...++.+.+.... | ....+..+..+|.+.|++++|...|+++.+ | +. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45677888888999999999999999999876422 1 124667789999999999999999999875 2 12 245
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhH
Q 036287 186 NSLIAGLAMH--------GRSIEAVEMFREMINQGIRPTKV-TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHY 256 (488)
Q Consensus 186 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (488)
..+..++.+. |++++|.+.|+++... .|+.. ....+... .. ... .. ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HH---------HHHH
Confidence 5666666654 7899999999999875 45432 22111111 00 000 00 0112
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 257 GCIVDLLSRVGRPEEAYDFITNM----KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
..+...|.+.|++++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788999999999988887 2223 357888999999999999999999888876554
No 110
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.44 E-value=0.00042 Score=69.44 Aligned_cols=298 Identities=15% Similarity=0.108 Sum_probs=173.1
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRP-NEVTIVCVLS 124 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 124 (488)
+...|..|.-+...+|+++.+.+.|++...- ....|+.+...|...|....|..+++.-......| |...+...-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 5778888888999999999999999986532 45689999999999999999999998766543224 3444444444
Q ss_pred HHH-hcCchHHHHHHHHHHHHc--C----CCC-------------------------------------------cHhHH
Q 036287 125 ACS-QLGALELGRWIHSYMGKH--R----IDL-------------------------------------------NHIVG 154 (488)
Q Consensus 125 ~~~-~~~~~~~a~~~~~~~~~~--g----~~~-------------------------------------------~~~~~ 154 (488)
.|. +.+..+++..+-..++.. + +.| |..+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 443 345555555554444441 1 111 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-------------- 216 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------------- 216 (488)
.-|.--|+..++++.|.....+..+ .+...|..+.-.+...+++.+|+.+.+...+. .|+
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhh
Confidence 1222334455555555555544332 35566666666666667777777766655542 111
Q ss_pred -------HHHHHHHHHHHhc------cC-----------------CHHHH-------HHHHH----hcc-----cccCcc
Q 036287 217 -------KVTFVGVLNACSH------GG-----------------LVDLG-------FEIFQ----SMT-----RDYGIE 250 (488)
Q Consensus 217 -------~~t~~~ll~a~~~------~g-----------------~~~~a-------~~~~~----~~~-----~~~~~~ 250 (488)
..|...++...-. .+ +..++ ..... .+. ....+.
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0111222211110 00 00000 00000 000 000111
Q ss_pred cC--------hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 251 PQ--------IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 251 p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
|+ ...|....+.+.+.+..++|...+.+. ++.| .+..|......+...|+.++|...|..++.++|+++.
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 11 122344555666677777776655555 3334 3556666666677778888888888888888888888
Q ss_pred hHHHHHHHHhcCCChHHHHH--HHHHHHhC
Q 036287 321 TYVLLSNAYASSGKWKEAVQ--IRAKMKEA 348 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~--~~~~m~~~ 348 (488)
...+++.++.+.|+..-|.. ++..+.+.
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 88888888888887777766 66666553
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=7.9e-06 Score=67.45 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=62.7
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH 298 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 298 (488)
....++...|++++|...|+.+.. +.| +...|..+..++.+.|++++|...|++. ...| +...|..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 344455556666666666666552 223 3555566666666666666666666665 3333 456666666666667
Q ss_pred CChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
|+.++|...++.+++..|.++..+.....+
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 777777777777777777666665554443
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.41 E-value=8.8e-05 Score=73.48 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=74.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChH
Q 036287 191 GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
+......+.+|+.+++.++..+. -.--|..+..-|+..|+++.|.++|-+.- .++--|++|++.|+++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHH
Confidence 34455677778888877776432 22345667788999999999999887653 3455788999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHH
Q 036287 271 EAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 271 ~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 308 (488)
.|.++-.+. +-......|-+-..-.-.+|++.+|++++
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 999988776 43334556666666667777777766554
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=3.8e-05 Score=79.39 Aligned_cols=160 Identities=11% Similarity=0.069 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHH
Q 036287 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV-TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYG 257 (488)
Q Consensus 180 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 257 (488)
.++..+..|.....+.|.+++|..+++...+ ..||.. ....+..++.+.+.+++|+..++.... ..|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 4578888899999999999999999999998 567654 555677889999999999999999984 3554 67778
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCCh
Q 036287 258 CIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW 335 (488)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 335 (488)
.+..++.+.|++++|..+|++. ...|+ ..+|.++..++...|+.++|...|+++++...+....|+.++. +.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 8889999999999999999998 33444 7899999999999999999999999999977555566554432 33
Q ss_pred HHHHHHHHHHHhCCC
Q 036287 336 KEAVQIRAKMKEAGV 350 (488)
Q Consensus 336 ~~a~~~~~~m~~~g~ 350 (488)
..-..+++.+.-.+.
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 233 NADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHcCcccc
Confidence 344455555544443
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=3.2e-05 Score=67.51 Aligned_cols=153 Identities=9% Similarity=0.121 Sum_probs=103.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+. -+.|...+..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666776666544433322211 0112245566777777766664 2455666777777788888888888
Q ss_pred HHHHhcccccCccc-ChhhHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 238 EIFQSMTRDYGIEP-QIEHYGCIVDL-LSRVGR--PEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 238 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
..|+...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887763 334 46677777775 466676 48888888887 4555 4677888888889999999999999999
Q ss_pred HhcCCCCchhH
Q 036287 312 LDCRSADSGTY 322 (488)
Q Consensus 312 ~~~~p~~~~~~ 322 (488)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99887775443
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=3.7e-05 Score=67.30 Aligned_cols=117 Identities=19% Similarity=0.192 Sum_probs=57.5
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK 300 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 300 (488)
......+.|++.+|...+++... .-++|...|+.+.-+|.+.|++++|..-|.+. .+.| ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 34444444555555555544442 33444455555555555555555554444443 3333 23444555555555555
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHH
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
.+.|+.++.......+.++.+-..|..+....|++++|.++
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555444545555555555555555555544
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=6.2e-06 Score=68.06 Aligned_cols=95 Identities=7% Similarity=-0.143 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS 332 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 332 (488)
.+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++|.++.++..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3556788889999999999999987 5555 5888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 036287 333 GKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 333 g~~~~a~~~~~~m~~~g 349 (488)
|++++|...++...+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 117
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=0.0006 Score=64.04 Aligned_cols=210 Identities=11% Similarity=0.021 Sum_probs=150.0
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVKV---KDTVCWTAMIDGLVRNG-EMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
.++..+-..+...++.++|+.+.+.+.. .+..+|+.-...+...| ++++++..++++.+.+ +-+..+|+.....+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 4566777777888999999999998763 34557877777777777 6799999999999875 33556677665556
Q ss_pred HhcCch--HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc---CCh
Q 036287 127 SQLGAL--ELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH---GRS 198 (488)
Q Consensus 127 ~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~ 198 (488)
.+.+.. +.+..+...+++.. +.+..+|+...-++...|++++|++.++++.+ .|..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 666653 67788888888776 56788899888889999999999999999886 5678898887776654 222
Q ss_pred ----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh
Q 036287 199 ----IEAVEMFREMINQGIRPTKVTFVGVLNACSHG----GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR 265 (488)
Q Consensus 199 ----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 265 (488)
+++++...+++.. .+-|...++.+...+... +...+|..++...... -..+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHh
Confidence 4566777677664 234556666666666552 3345677777765531 12345566777777764
No 118
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=6.6e-05 Score=75.28 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=36.8
Q ss_pred chhhHHHHHH--HHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC
Q 036287 17 NRSTRLKLVE--LYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK 77 (488)
Q Consensus 17 ~~~~~~~li~--~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 77 (488)
|..|-.++++ .|.--|+++.|.+-.+.+.. ..+|..|.+.+.+..++|-|.-.+-.|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS---~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS---DSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh---hHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 4555555553 45666777777666655544 5577777777777777776666655554
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00023 Score=67.81 Aligned_cols=176 Identities=19% Similarity=0.155 Sum_probs=121.1
Q ss_pred HHHHHHHHHhccc------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 167 IDKALQVFEEMKE------RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 167 ~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
+.+++..-++++. ++.......+.+.........+-.++-+-.+ ..-...-|..-+ .+...|+.++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHHH
Confidence 4445555555553 3445555555544333322223222222222 111222233333 345678899999999
Q ss_pred HhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
+.+.++ .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|.+
T Consensus 330 ~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 330 QPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 998853 3344666677888999999999999999988 66676 6778888899999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+..|..|..+|...|+..++...+.++..
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999998888888776643
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.00015 Score=68.95 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=53.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 169 (488)
.+...|++++|+..++.+.+. .+-|..........+...++.++|.+.++.++... +....+.-.+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 334445555555555554443 12222333333344445555555555555554442 1113344444555555555555
Q ss_pred HHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 170 ALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 170 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
|..+++.... .|...|..|..+|...|+..+|....-+
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 5555544432 2444555555555555555555444443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=7.3e-05 Score=65.48 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG 130 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 130 (488)
..+-..+...|+-+.+..+..... ..|....+.++....++|++.+|+..|++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 455556666666666666665533 2344555667777777777777777777776643 567777777777777777
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
+.+.|..-|.+..+.. +-+..+.|.|.-.|.-.|+++.|..++..... .|...-..+.......|++++|..+-.+
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777777777664 33445556666666667777777777765432 3555666666666677777777766654
Q ss_pred HH
Q 036287 208 MI 209 (488)
Q Consensus 208 m~ 209 (488)
-.
T Consensus 228 e~ 229 (257)
T COG5010 228 EL 229 (257)
T ss_pred cc
Confidence 43
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.30 E-value=0.0001 Score=75.53 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=56.8
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHH
Q 036287 264 SRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
+..|.+.-|...|-+- -..| ...+|..+...|....|++.|...|.....++|.|...|......-...|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444555444443332 1222 4667777777777888889999999999999999888888777777777887777777
Q ss_pred HHH
Q 036287 342 RAK 344 (488)
Q Consensus 342 ~~~ 344 (488)
|..
T Consensus 907 faH 909 (1238)
T KOG1127|consen 907 FAH 909 (1238)
T ss_pred HHh
Confidence 765
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00054 Score=65.93 Aligned_cols=285 Identities=15% Similarity=0.100 Sum_probs=190.0
Q ss_pred HHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchH
Q 036287 58 NCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQLGALE 133 (488)
Q Consensus 58 ~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 133 (488)
++.+..|+++.|...|-+.. ++|.+.|..=..+|+..|++++|++=-.+-++ +.|+ ...|+-...+...+|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999998743 56888999999999999999999987777666 4677 468888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC------------------------------------------------
Q 036287 134 LGRWIHSYMGKHRIDLNHIVGGALINMYSRCG------------------------------------------------ 165 (488)
Q Consensus 134 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g------------------------------------------------ 165 (488)
+|..-|..-++.. +.+....+.|.+++.-..
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999998887765 456666777776662110
Q ss_pred ---CHHHHHHHHHhcc----------------cC------------C----------HHHHHHHHHHHHhcCChhHHHHH
Q 036287 166 ---DIDKALQVFEEMK----------------ER------------D----------VTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 166 ---~~~~A~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~g~~~~A~~l 204 (488)
.+..|..++.... .| | ..-.-.+.++..+..++..|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0111111111100 00 0 01233455566666777778888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc--C----hhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP--Q----IEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~----~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
+....+. .-+..-++....+|...|...+.........+. |-.. + ......+..+|.+.++++.|+..+++
T Consensus 247 y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 8777764 333333344445577777666655554444332 1111 0 11222344467777888888888877
Q ss_pred C---C------------------------CCCCH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 279 M---K------------------------IAPDH-IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 279 m---~------------------------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
. . +.|.. .--..=...+.+.|++..|.+.+.++++.+|+|+..|....-+|.
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 5 1 22221 111112345678899999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 036287 331 SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~ 348 (488)
+.|.+..|++=-+...+.
T Consensus 404 kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 999999999876665554
No 124
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.28 E-value=1.4e-06 Score=52.34 Aligned_cols=35 Identities=37% Similarity=0.787 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE 116 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 116 (488)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.28 E-value=2.8e-05 Score=63.40 Aligned_cols=95 Identities=8% Similarity=-0.050 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
....-.+...+...|++++|.++|+-. .+.| +..-|..|...|...|++++|+..+..+..++|+++.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444455666777899999999999988 5555 47788899999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHh
Q 036287 331 SSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~ 347 (488)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998865
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=0.00029 Score=73.01 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=116.1
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHH
Q 036287 147 IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT-FVG 222 (488)
Q Consensus 147 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 222 (488)
.+.+...+-.|.......|.+++|+.+++...+ | +...+..+...+.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688888899999999999999999999875 4 5567888999999999999999999999984 566555 445
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLL 292 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 292 (488)
+..++.+.|++++|..+|+++... .+-+...+..+...+-..|+.++|...|++. ...|-+.-|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 667788999999999999999852 2233788889999999999999999999987 3334455555544
No 127
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00042 Score=63.17 Aligned_cols=328 Identities=12% Similarity=0.076 Sum_probs=198.2
Q ss_pred CchhhH-HHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHH-HHHHH
Q 036287 16 SNRSTR-LKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKV--KDTVCWTA-MIDGL 91 (488)
Q Consensus 16 ~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~ 91 (488)
|+.... ..|...-.|.|+-++-..+-..+.+. ..---+|.+.....-.+++|++++.++.. |+-...|. |.-+|
T Consensus 118 ~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 118 PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 444444 45556667788877777666665542 23334555555556678999999999874 44445554 44577
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH--------------HHHHHHHcCC----------
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRW--------------IHSYMGKHRI---------- 147 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~--------------~~~~~~~~g~---------- 147 (488)
.+..-++-+.+++.--++. ++.+....+..+....+.=+-..+.+ ..+.+.+.++
T Consensus 196 yKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgAL 274 (557)
T KOG3785|consen 196 YKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGAL 274 (557)
T ss_pred HhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHH
Confidence 8888888888888777664 33333444433332222211111111 1122222211
Q ss_pred --CC-----cHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCC
Q 036287 148 --DL-----NHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGR-------SIEAVEMFREMINQGI 213 (488)
Q Consensus 148 --~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~ 213 (488)
-| -+..-..|+--|.+.|++.+|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-+++.
T Consensus 275 qVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 275 QVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred HhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 01 112223456678899999999999988876555544443334444543 3345555554444444
Q ss_pred CCCHHH-HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHH
Q 036287 214 RPTKVT-FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-PDHIMLGS 290 (488)
Q Consensus 214 ~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ 290 (488)
..|... -.++.+++.-..++++.+.+++.+.. +=...|...+ .+..+++..|...+|+++|-.+ +.+ .|..+|.+
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 433322 22344445555678899998888874 3333444444 4788999999999999999887 222 36777877
Q ss_pred HHH-HHHHhCChhHHHHHHHHHHhcC-CCCc-hhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 291 LLS-ACKIHGKLQLGEQIAKRLLDCR-SADS-GTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 291 ll~-~~~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
++. .|...+.++.|..++ ++.+ |.+. .....+.+-|.+++.+--|.+.|+.+...+..
T Consensus 433 ~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 665 557778888887655 4444 3322 23445678899999999999999988765433
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00026 Score=71.21 Aligned_cols=239 Identities=16% Similarity=0.171 Sum_probs=165.5
Q ss_pred eeeHHHHHH--HHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--------CCCCHHH
Q 036287 50 VVASTVMIN--CYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD-N--------VRPNEVT 118 (488)
Q Consensus 50 ~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~t 118 (488)
..+--++++ .|..-|+.|.|.+-.+.+. +...|..|.+.|++..+.+-|.-.+-.|... | -.|+ .+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-ED 802 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-ch
Confidence 666666663 4677899999988777664 4578999999999999888887777666431 1 1232 22
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-HHHHHHHHHHHHhcCC
Q 036287 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD-VTTYNSLIAGLAMHGR 197 (488)
Q Consensus 119 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~ 197 (488)
=.-+.-....+|.+++|+.+|.+-.+.. .|=..|-..|.+++|.++-+.-..-. -.+|.....-+-..++
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 2333334568899999999999887643 45567888999999998866433211 2356556666666777
Q ss_pred hhHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHH
Q 036287 198 SIEAVEMFREM----------INQG---------IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGC 258 (488)
Q Consensus 198 ~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 258 (488)
.+.|++.|++. .... -..|...|..........|+.+.|+.+|..... |-+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs 943 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFS 943 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhh
Confidence 88888777652 2211 122444555566667778999999999888763 456
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 259 IVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
++...+-.|+.++|-++-++-+ |......|.+.|-..|++.+|...|.++..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6777777888888888887765 555556677788888888888877776644
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=4.3e-05 Score=73.18 Aligned_cols=120 Identities=11% Similarity=0.075 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
.+|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|.+++.+.++.. +.+..+...-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555666666666666666543 432 2335555555556666666666665442 33455555555666666
Q ss_pred CCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 165 GDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 165 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
++.+.|.++.+++.+ | +..+|..|..+|.+.|+++.|+-.++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777766654 3 33467777777777777777776666543
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0016 Score=57.27 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=78.0
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChh
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLS----RVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQ 302 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~ 302 (488)
+..+++-|.+.++.|.+ + .+..+.+.|..++. ..+.+.+|.-+|++| +..|+..+.+-...++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 34455555555555552 1 22233443444443 345677888888888 46788888888888889999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHH-HHHHHHHH
Q 036287 303 LGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEA-VQIRAKMK 346 (488)
Q Consensus 303 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 346 (488)
+|+.+++.++..++.++.+...++-.-...|.-.++ .+.+.+++
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999999999988888888888777777775443 34444443
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.2e-06 Score=51.39 Aligned_cols=35 Identities=51% Similarity=0.892 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK 217 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 217 (488)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00042 Score=60.81 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=126.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAV-EMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
+-..|...|.......-...-..+.......+......-++.++-+ ++.+.+.......+......-...|.+.|++++
T Consensus 47 ~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~de 126 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDE 126 (299)
T ss_pred HHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHH
Confidence 3445555555443332222222233333333333333344444433 344555555455554444455567999999999
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHh----CChhHHHHHHHHH
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIH----GKLQLGEQIAKRL 311 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~ 311 (488)
|++..+... +......=+..+.+..+++-|.+.+++|..-.+..|.+.|..++.+. +.+..|.-+|+++
T Consensus 127 Al~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 127 ALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred HHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 999887632 33445555667788899999999999995444677888788777554 4688999999999
Q ss_pred HhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 312 LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 312 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.+.-|+.+.+.+..+.++...|+|++|..++++...+.-
T Consensus 200 s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 200 SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 998888889999999999999999999999999987644
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=3.6e-05 Score=73.72 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=93.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 297 (488)
..+|+..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| +...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344556666667777777777777643 244 3445667777777777787777776 3233 56666666777889
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.++.+.|..+++++.+..|.+..+|..|+.+|...|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988774
No 134
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.18 E-value=0.0049 Score=59.63 Aligned_cols=334 Identities=11% Similarity=0.093 Sum_probs=190.6
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHHHHHH
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKV--KDTVCWTAMIDG 90 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~ 90 (488)
+-|..+|+.||+-+... .++++++.++++.. +..+..|..-|..-.+..+++..+++|.+... -++..|..-|+-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 45888999999988666 99999999999876 45678999999999999999999999999763 377788777764
Q ss_pred HHH-cCCHHH----HHHHHHHH-HHCCCCCCH-HHHHHHHH---------HHHhcCchHHHHHHHHHHHHcCCCCcHhHH
Q 036287 91 LVR-NGEMAR----ALDLFREM-QRDNVRPNE-VTIVCVLS---------ACSQLGALELGRWIHSYMGKHRIDLNHIVG 154 (488)
Q Consensus 91 ~~~-~g~~~~----A~~~~~~m-~~~g~~p~~-~t~~~ll~---------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 154 (488)
-.+ +|.... ..+.|+-. .+.|..+-. ..|+..+. -+....+++..+++++.++...+..=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 332 222222 22333322 234433322 22333222 233444667777788877764332212222
Q ss_pred HHH------HHH-------HHhcCCHHHHHHHHHhccc---------C------------CHHHHHHHHH----------
Q 036287 155 GAL------INM-------YSRCGDIDKALQVFEEMKE---------R------------DVTTYNSLIA---------- 190 (488)
Q Consensus 155 ~~l------i~~-------y~~~g~~~~A~~~~~~~~~---------~------------~~~~~~~li~---------- 190 (488)
+-. |+. --+...+..|++++++... + .+..|-.+|.
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 110 100 0122345556666555431 0 0011211111
Q ss_pred ---------------------------------------HHHhcCC-------hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036287 191 ---------------------------------------GLAMHGR-------SIEAVEMFREMINQGIRPTKVTFVGVL 224 (488)
Q Consensus 191 ---------------------------------------~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ll 224 (488)
.+...|+ .+++..+++.....-..-+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 334444444443322222333333222
Q ss_pred HHHh---ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCC-CHHHHHHHHHHHHH
Q 036287 225 NACS---HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 225 ~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~ll~~~~~ 297 (488)
+.=. .....+....+++++.....+.|+. +|-+++..-.|..-+..|..+|.+. +..+ ++.+.++++.-++
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 2111 1112444455555555444445543 5667777777777788888888777 3333 5666666666554
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
.++.+-|.++|+--++..++++..-...++-+...++-..+..+|++....++.
T Consensus 414 skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 467777888888777777777665566677777778878888888887776544
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=3.7e-06 Score=50.07 Aligned_cols=33 Identities=30% Similarity=0.608 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRP 114 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 114 (488)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 588999999999999999999999999988887
No 136
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0029 Score=65.38 Aligned_cols=242 Identities=12% Similarity=0.138 Sum_probs=153.4
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ 128 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 128 (488)
.+.+|+.+..+-.+.|.+.+|.+-|-+.. |+..|.-.+....+.|.|++-.+.+...++..-.|...+ .++-+|++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHH
Confidence 47799999999999999999999886554 567888999999999999999999888777665565443 56778888
Q ss_pred cCchHHHHHHHH-----HHHHcC--------------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHH
Q 036287 129 LGALELGRWIHS-----YMGKHR--------------IDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLI 189 (488)
Q Consensus 129 ~~~~~~a~~~~~-----~~~~~g--------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 189 (488)
.+++.+.+++.. .+...| +-.++.-|..|.......|+++.|...-++. .+..+|...-
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA--ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA--NSTKTWKEVC 1256 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--cchhHHHHHH
Confidence 887776655431 000000 0012233344444445555555554433322 3667888887
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCC
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 268 (488)
.+|...+.+.-| +|-..++-......--++..|-..|-+++-..+++... |++- ....|+-|.-.|++- +
T Consensus 1257 faCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky-k 1327 (1666)
T KOG0985|consen 1257 FACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY-K 1327 (1666)
T ss_pred HHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc-C
Confidence 777766554322 23233333445567779999999999999999888765 5443 355677777778764 3
Q ss_pred hHHHHHHHH----hCCCC------CCHHHHHHHHHHHHHhCChhHHH
Q 036287 269 PEEAYDFIT----NMKIA------PDHIMLGSLLSACKIHGKLQLGE 305 (488)
Q Consensus 269 ~~~A~~~~~----~m~~~------p~~~~~~~ll~~~~~~g~~~~a~ 305 (488)
+++..+.++ +..++ .....|+.+.-.|.+-..++.|.
T Consensus 1328 p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1328 PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 344333322 22211 12455666666666655555543
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=3.6e-05 Score=62.85 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..+...|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455666777788888888888888876 4344 56778888888888899999999999988888888888888899999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 036287 331 SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~ 348 (488)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999988877664
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=0.00013 Score=59.62 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc
Q 036287 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH 195 (488)
Q Consensus 119 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 195 (488)
...+...+...|+.++|.+.++.+...+ +.+...+..+...|.+.|++++|..+|++... .+...+..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344444555555555555555555443 33445555555555555566665555555432 2344555555566666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHH
Q 036287 196 GRSIEAVEMFREMINQGIRPTKVTF 220 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~p~~~t~ 220 (488)
|++++|+..|++..+ ..|+...+
T Consensus 99 g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 99 GEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred CCHHHHHHHHHHHHH--hccccchH
Confidence 666666666666655 33444443
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0007 Score=59.04 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKERDVTTYNSL---IAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
+.-+.-+...+|+.+.|..+++++..+-+.++... .--+-..|++++|+++++.+.+.+ +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33444445556777777777776654211111111 112445788899999999888864 55667776666666667
Q ss_pred CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH---hCChhHHH
Q 036287 231 GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKI---HGKLQLGE 305 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~---~g~~~~a~ 305 (488)
|+.-+|.+-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -+.|. +..+..+...+.. ..+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777765 56778889999999999999999999999988 34453 4444555554433 34678899
Q ss_pred HHHHHHHhcCCCCchhHH
Q 036287 306 QIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 306 ~~~~~~~~~~p~~~~~~~ 323 (488)
+.+.+.+++.|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999986644443
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=7.8e-06 Score=48.63 Aligned_cols=33 Identities=39% Similarity=0.687 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888999999988888877
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00079 Score=55.66 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc--HhHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN---EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN--HIVGGAL 157 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l 157 (488)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4777777777777777753 222 12333344666777888888888887777653332 2233446
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKER--DVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
...+...|++++|+..++....+ ....+......|.+.|+.++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777778888888777665443 234455666677777777777777765
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00013 Score=54.55 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 333 (488)
+..+...+...|++++|.+.+++. ...|+ ...+..+...+...++++.|.+.++...+..|.+..++..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778888899998888876 44443 4677778888888899999999999999888888788888899999999
Q ss_pred ChHHHHHHHHHHHh
Q 036287 334 KWKEAVQIRAKMKE 347 (488)
Q Consensus 334 ~~~~a~~~~~~m~~ 347 (488)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.89 E-value=0.002 Score=67.71 Aligned_cols=221 Identities=10% Similarity=0.096 Sum_probs=137.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI-VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
..+...|..|+..|...+++++|.++.+...+. .|+...+ ..+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 446778899999999999999999999876664 4554433 2333345555554444333 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVD 234 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 234 (488)
+++......++....-+...|.+ .+..++..+..+|.+.|+.++|..+|+++.+.. +-|....+.+...|+.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33333333344333333333332 233466777888888888888888888888864 44566777777777777 888
Q ss_pred HHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 036287 235 LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLL 312 (488)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 312 (488)
+|.+++.++... |...+++.++.+++.++ ...|+ ...+..+++....+-..
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~----------- 219 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF----------- 219 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc-----------
Confidence 888887776532 55566777777777776 33333 22222222222211111
Q ss_pred hcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 313 DCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 313 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
..-..++..|-+.|-...+|+++..+++...+..
T Consensus 220 ---~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 220 ---TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred ---chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 1122456667778888899999999999997753
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.89 E-value=1.5e-05 Score=46.19 Aligned_cols=31 Identities=29% Similarity=0.687 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNV 112 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 112 (488)
++||+||++|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888777663
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.87 E-value=0.00043 Score=57.28 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KIAPDH----IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 333 (488)
+...+...|++++|...|+.. ...|+. .....|...+...|++++|...++.. ...+..+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 334444455555555555444 111221 22333444455555555555555442 112223345555666666666
Q ss_pred ChHHHHHHHHH
Q 036287 334 KWKEAVQIRAK 344 (488)
Q Consensus 334 ~~~~a~~~~~~ 344 (488)
++++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666666553
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=2.3e-05 Score=45.37 Aligned_cols=31 Identities=52% Similarity=0.759 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877653
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.00039 Score=55.08 Aligned_cols=65 Identities=12% Similarity=0.035 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++...|+.+.|...++++++..|+++.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 333444555555555555555544 21222 334555555555666666666666666666655543
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0067 Score=53.12 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVL-NACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 262 (488)
.+..++-+....|+.+.|...++++... + |.+.-...+= .-+...|..++|.++++.+.++ -+.|..+|-.=+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 3445556667789999999999999876 3 5443322221 2245578999999999999974 24556677766667
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC---hHH
Q 036287 263 LSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK---WKE 337 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~ 337 (488)
.-..|+--+|++-+... .+..|...|.-+...|...|+++.|.-.+++++=..|.++..+..+...+.-.|- .+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77778888888877665 5667899999999999999999999999999999999999999999988766554 556
Q ss_pred HHHHHHHHHhC
Q 036287 338 AVQIRAKMKEA 348 (488)
Q Consensus 338 a~~~~~~m~~~ 348 (488)
+.+.+.+..+.
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 77778777654
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00043 Score=54.82 Aligned_cols=96 Identities=15% Similarity=0.043 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHH
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLL 325 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 325 (488)
.++..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566777888899999999999887 33333 3566778889999999999999999999987764 4578889
Q ss_pred HHHHhcCCChHHHHHHHHHHHhCC
Q 036287 326 SNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+.++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=4.3e-05 Score=56.51 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=46.8
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHH
Q 036287 266 VGRPEEAYDFITNM-KIAP---DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
.|++++|+.+++++ ...| +...|..+..++...|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 1122 344455566666777777777777766 555555555555667777777777777777
Q ss_pred HHH
Q 036287 342 RAK 344 (488)
Q Consensus 342 ~~~ 344 (488)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.74 E-value=0.027 Score=57.97 Aligned_cols=221 Identities=16% Similarity=0.176 Sum_probs=111.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC--SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
..+++.+|++...++.+. .|+. .|..++.++ .+.|..++|..+++.....+.. |..+...+-.+|...|+.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345566666666665554 2332 223333333 4556666666555555444433 555666666666666666666
Q ss_pred HHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----------CHHHHHH
Q 036287 171 LQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG----------LVDLGFE 238 (488)
Q Consensus 171 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------~~~~a~~ 238 (488)
..++++... |+......+..+|.+.+.+.+-.+.=-+|.+ ..+-+...|.++++...+.- -..-|..
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 666666554 3333333444455555544432222222222 13444555555555544321 1234555
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh-C-CCC--CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN-M-KIA--PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
.++.+.++.|-.-+..-.-.-...+...|++++|.+++.. . ..- .+...-+.-+..+...+++.+-.++..++++.
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 5666655432111111122223345566777777777732 2 111 12333344555666667777777777777777
Q ss_pred CCCC
Q 036287 315 RSAD 318 (488)
Q Consensus 315 ~p~~ 318 (488)
+++|
T Consensus 256 ~~Dd 259 (932)
T KOG2053|consen 256 GNDD 259 (932)
T ss_pred CCcc
Confidence 7766
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=0.00012 Score=51.71 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC-ChHHHHHHHHHHHh
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG-KWKEAVQIRAKMKE 347 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 347 (488)
++.+|..+...+...|++++|+..|+++++.+|.++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999988765
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.68 E-value=0.0039 Score=64.48 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHH
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
.|..|...|...-+...|.+.|+..-+ .|..++-.....|+...++++|..+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 344444444444444445555544433 2334444445555555555555444
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.00076 Score=50.31 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 84 WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.+....+.. +.+..++..+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3444555555566666666665555432 2223344444444555555555555555554433 2222344444444444
Q ss_pred cCCHHHHHHHHHh
Q 036287 164 CGDIDKALQVFEE 176 (488)
Q Consensus 164 ~g~~~~A~~~~~~ 176 (488)
.|+.+.|...+..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 4555554444443
No 155
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.06 Score=50.61 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036287 217 KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACK 296 (488)
Q Consensus 217 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 296 (488)
..+.+..+.-|...|+...|.++-... . .|+...|-..+.+|+..++|++-.++... +-.+.-|..++.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 345555666777788888888876554 3 38888899999999999999998887654 234578899999999
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
..|+..+|..+..++ .+..-+.+|.+.|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999998888772 2356778899999999998765443
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.59 E-value=0.00052 Score=65.92 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=81.3
Q ss_pred HHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCh
Q 036287 224 LNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKL 301 (488)
Q Consensus 224 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 301 (488)
...+...|++++|...|..+.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44566778999999999998842 2334677888888899999999999998887 5555 467788888889999999
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 302 QLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 302 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
+.|...++++++++|.++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999887665554333
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0027 Score=58.80 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA-CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+ .+..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467778888888888888888888887542 2233344433333 3335677779999998886 34566777888889
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+++...++.+++.+.-|.+. ....+++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ 148 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSD 148 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHH
Confidence 999999999999999887 32333 35899999999999999999999999999877653 3333443
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.0035 Score=53.54 Aligned_cols=130 Identities=14% Similarity=0.114 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN--EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGAL 157 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 157 (488)
....+..+...+...|++++|+..|++..+....+. ...+..+...+...|+++.|...+...++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677777888888888888888888876433222 3566777777888888888888888877754 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036287 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG 231 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 231 (488)
..+|...|+...+..-++... ..+++|++.+++.... .|+. +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 777777776555543332211 1245666777666652 3433 444444444333
No 159
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.02 Score=50.50 Aligned_cols=192 Identities=12% Similarity=0.066 Sum_probs=125.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CC--------------------------------ceeeHHHHHHHHHHcC
Q 036287 20 TRLKLVELYGKCGEFKDAMQLFDEMPE---CN--------------------------------DVVASTVMINCYVEHG 64 (488)
Q Consensus 20 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~--------------------------------~~~~~~~li~~~~~~g 64 (488)
.|+.-+..+.+....++|..-++...+ ++ ...-|++|+..+.-..
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~ 150 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT 150 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 355566777788888877655443322 11 2344556666555555
Q ss_pred CHHHHHHHHhhcCCC--CHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH
Q 036287 65 LVENAFEVFSRVKVK--DTV--------CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALEL 134 (488)
Q Consensus 65 ~~~~A~~~f~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 134 (488)
-+++-...|+.-..| .+. .-++++..+.-.|++.-.+.++.+.++...+.++.....+.+...+.|+.+.
T Consensus 151 ~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~ 230 (366)
T KOG2796|consen 151 VVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKT 230 (366)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHH
Confidence 555555555543322 222 3456777777788888888888888887666677777788888888888888
Q ss_pred HHHHHHHHHHcC-----CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036287 135 GRWIHSYMGKHR-----IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFR 206 (488)
Q Consensus 135 a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 206 (488)
|...++...+.. ++....+.-.....|.-.+++..|...|++++. .|++.-|.-.-+..-.|+..+|++.++
T Consensus 231 a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 231 AEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred HHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 888888776543 233333333444556667788888888877765 455666655555556788888888888
Q ss_pred HHHHc
Q 036287 207 EMINQ 211 (488)
Q Consensus 207 ~m~~~ 211 (488)
.|.+.
T Consensus 311 ~~~~~ 315 (366)
T KOG2796|consen 311 AMVQQ 315 (366)
T ss_pred HHhcc
Confidence 88874
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00026 Score=49.34 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+...+...|++++|...++++++..|.++..+..++.++...|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667778888888888888888888888888888888888888888888887765
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.55 E-value=0.016 Score=56.28 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 97 MARALDLFREMQRD-NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDL-NHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 97 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
.+..-..+++++.. .+.| ..+|...++...+..-++.|+.+|..+.+.+..+ ++.+.++++.-|+ .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 34444455554432 1222 2445556666666666677777777776666555 6666666666655 45666666666
Q ss_pred Hhccc--CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHhcccccC-
Q 036287 175 EEMKE--RDV-TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK--VTFVGVLNACSHGGLVDLGFEIFQSMTRDYG- 248 (488)
Q Consensus 175 ~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 248 (488)
+--.. +|. .--+..++-+...++-..|..+|++....++.||. ..|..+|..=+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 64332 232 23344555556666666666666666666544443 4566666666666666666666555544332
Q ss_pred -cccChhhHHHHHHHHHhcCChH
Q 036287 249 -IEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 249 -~~p~~~~~~~li~~~~~~g~~~ 270 (488)
..+...+-..+++.|.-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 2333334444555555444433
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0013 Score=56.20 Aligned_cols=82 Identities=13% Similarity=0.061 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
...+..+...|...|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666777777788888888877766 22222 4577788888888899999999999999888888888888888
Q ss_pred HHhcCCC
Q 036287 328 AYASSGK 334 (488)
Q Consensus 328 ~~~~~g~ 334 (488)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877776
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.0014 Score=55.83 Aligned_cols=94 Identities=11% Similarity=-0.064 Sum_probs=75.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...++++++..|....++..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777888889999999988877 33332 357888889999999999999999999999988888888888
Q ss_pred HHHh-------cCCChHHHHHHHHHH
Q 036287 327 NAYA-------SSGKWKEAVQIRAKM 345 (488)
Q Consensus 327 ~~~~-------~~g~~~~a~~~~~~m 345 (488)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888776666544
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0041 Score=58.19 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=109.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHhcccccCcccChhh---HHHH------
Q 036287 191 GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN--ACSHGGLVDLGFEIFQSMTRDYGIEPQIEH---YGCI------ 259 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l------ 259 (488)
.+...|++++|.+.--..++. .++. .+...++ ++-..++.+.|...|++.. ...|+-.. ...+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 456778888888776666653 2221 1222222 3345677888888888776 33454221 1111
Q ss_pred ----HHHHHhcCChHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 260 ----VDLLSRVGRPEEAYDFITNM-KIA-----PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 260 ----i~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
.....+.|++.+|.+.+.+. .+. |++..|.....+..+.|+.++|+.-.+++++++|.-...|..-.+++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 22346789999999999887 444 45666777777788999999999999999999988888888889999
Q ss_pred hcCCChHHHHHHHHHHHhCC
Q 036287 330 ASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 330 ~~~g~~~~a~~~~~~m~~~g 349 (488)
...++|++|.+-++...+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999876643
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.50 E-value=0.017 Score=53.66 Aligned_cols=194 Identities=11% Similarity=0.050 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHH----cCCCC-cHhHH
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQR----DNVRPN-EVTIVCVLSACSQLGALELGRWIHSYMGK----HRIDL-NHIVG 154 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~-~~~~~ 154 (488)
......|...|++++|.+.|.+... .+-+.+ ...|......+. ..+++.|...+....+ .|-.. -..++
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3455566667777777776665532 111111 122333333332 2366666655555432 22110 12234
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHhccc----CC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHH-
Q 036287 155 GALINMYSRC-GDIDKALQVFEEMKE----RD-----VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR-----PTKV- 218 (488)
Q Consensus 155 ~~li~~y~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~- 218 (488)
..+..+|... |+++.|.+.|++..+ .+ ...+..+...+.+.|++++|+++|++....-.. ++..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 4455566666 666666666665442 11 123445555666667777777777666543221 1111
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhccccc-CcccC--hhhHHHHHHHHHh--cCChHHHHHHHHhC
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDY-GIEPQ--IEHYGCIVDLLSR--VGRPEEAYDFITNM 279 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m 279 (488)
.|...+-.+...|++-.|...++...... ++..+ ......|+++|-. ...+.+|..-|+.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 12222223444566666666666654221 12122 2333444555433 23345555555554
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.50 E-value=0.0044 Score=57.44 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA-CSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467777777777777888888888877543 2334444444333 22345666688888887765 45567777777788
Q ss_pred HHhcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036287 161 YSRCGDIDKALQVFEEMKER------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ 211 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 211 (488)
+.+.|+.+.|+.+|++.... ....|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888876641 3347888888777888888888888877773
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.0061 Score=61.32 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...|..+.-.....|++++|...++++++++| +..+|..++..|...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345555555555556777777777777777776 3566777777777777777777777666543
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.45 E-value=0.004 Score=50.98 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
.+...+.+.|++++|.++|+-+...+ +-+..-|..+..++-..|++++|...|....... +.|+..+..+..+|.+.|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33344444555555555555444432 1233333344444444455555555555544444 233444444445555555
Q ss_pred CHHHHHHHHHh
Q 036287 166 DIDKALQVFEE 176 (488)
Q Consensus 166 ~~~~A~~~~~~ 176 (488)
+.+.|++.|+.
T Consensus 118 ~~~~A~~aF~~ 128 (157)
T PRK15363 118 NVCYAIKALKA 128 (157)
T ss_pred CHHHHHHHHHH
Confidence 55555555443
No 169
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0049 Score=59.59 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=93.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCHH
Q 036287 110 DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE----RDVT 183 (488)
Q Consensus 110 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~ 183 (488)
.+.+.+...+..+++.+....+++.+..++-...... ...-..+..+++..|.+.|..+.+..+++.=.. +|..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456677788888888888888888888877776652 222344556888999999999998888876554 7888
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
++|.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888877777777777666666554
No 170
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.43 E-value=0.0038 Score=47.52 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHcCCCCcHhH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNV-RPNEVTIVCVLSACSQLG--------ALELGRWIHSYMGKHRIDLNHIV 153 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 153 (488)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777788999999999999999999 999999999999887654 24456778899999999999999
Q ss_pred HHHHHHHHHh
Q 036287 154 GGALINMYSR 163 (488)
Q Consensus 154 ~~~li~~y~~ 163 (488)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.43 E-value=0.0057 Score=51.95 Aligned_cols=81 Identities=11% Similarity=-0.019 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRP--NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALI 158 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 158 (488)
...|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456667777777777777777777776542222 12356666666677777777777776666542 22233444444
Q ss_pred HHHH
Q 036287 159 NMYS 162 (488)
Q Consensus 159 ~~y~ 162 (488)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.42 E-value=0.002 Score=61.95 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=81.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhc
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRV 266 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 266 (488)
....+...|++++|++.|++.++.. +.+...+..+..+|...|++++|...++.+.+ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999853 33566777788889999999999999999984 345 477888899999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036287 267 GRPEEAYDFITNM-KIAPDHIMLGSLLS 293 (488)
Q Consensus 267 g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 293 (488)
|++++|...|++. .+.|+.......+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 66666544444443
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.42 E-value=0.0087 Score=47.17 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC--CcHhHHHHHHHHH
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPN--EVTIVCVLSACSQLGALELGRWIHSYMGKHRID--LNHIVGGALINMY 161 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y 161 (488)
.+..++-..|+.++|+.+|++....|+..+ ...+..+.+.+...|++++|..+++........ .+..+...+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345567778888888888888888776544 335556677778888888888888877665311 1222333334455
Q ss_pred HhcCCHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036287 162 SRCGDIDKALQVFEEMKERDVTTYNSLIAGLA 193 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 193 (488)
...|+.++|...+-....++...|.--|..|+
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777666555444444444444443
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.41 E-value=0.00042 Score=51.18 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 94 NGEMARALDLFREMQRDNVR-PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 94 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
+|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555555555555553211 1222333344455555555555555544 21111 112222233444555555555555
Q ss_pred HHH
Q 036287 173 VFE 175 (488)
Q Consensus 173 ~~~ 175 (488)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.00083 Score=46.70 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5556 477888888899999999999999999999988764
No 176
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.0016 Score=60.71 Aligned_cols=257 Identities=15% Similarity=0.082 Sum_probs=151.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCchHHHHHHHHHHH--H--cCCC-CcHhHHHHHHHH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNE----VTIVCVLSACSQLGALELGRWIHSYMG--K--HRID-LNHIVGGALINM 160 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~li~~ 160 (488)
-+++.|+......+|+..++.|. -|- ..|..+.++|.-++++++|.++|..=+ . .|-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35677777777777777777662 233 334455566667777777777664321 1 0100 011112223444
Q ss_pred HHhcCCHHHHHHHHHhcc-------cC--CHHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHHH-
Q 036287 161 YSRCGDIDKALQVFEEMK-------ER--DVTTYNSLIAGLAMHGR--------------------SIEAVEMFREMIN- 210 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~- 210 (488)
+--.|.+++|.-.-.+-. ++ ...++..+...|...|+ ++.|.+.|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444566666654322211 10 12234445566655542 1223333332111
Q ss_pred ---cCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHhc---ccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC---
Q 036287 211 ---QGI-RPTKVTFVGVLNACSHGGLVDLGFEIFQSM---TRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM--- 279 (488)
Q Consensus 211 ---~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 279 (488)
.|- -.....|..|...|.-.|+++.|...++.- .+++|-.. ....++.|..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 110 011234555555566678899998776542 22344333 2467788889999999999999988764
Q ss_pred ----CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh----cC--CCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 280 ----KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRLLD----CR--SADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 280 ----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+- ...+.+..+|.++|....+++.|+.++.+-+. ++ .-...++.+|.++|...|..++|+.+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 21 12367778899999999999999988877554 22 23456899999999999999999887766543
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.00036 Score=49.11 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=40.1
Q ss_pred HHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 296 KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
...|++++|...++++.+..|.+..++..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888888776654
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.002 Score=57.82 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHH
Q 036287 230 GGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQ 306 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 306 (488)
.+++++|+..|...+ .+.|+ ...|..=..+|.+.|.++.|++-.+.. .+.|. ...|..|..+|...|++++|++
T Consensus 94 ~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 344444444444444 22332 333333444555555555555544443 44444 4566666666666677777777
Q ss_pred HHHHHHhcCCCCc
Q 036287 307 IAKRLLDCRSADS 319 (488)
Q Consensus 307 ~~~~~~~~~p~~~ 319 (488)
.|++.++++|.+.
T Consensus 171 aykKaLeldP~Ne 183 (304)
T KOG0553|consen 171 AYKKALELDPDNE 183 (304)
T ss_pred HHHhhhccCCCcH
Confidence 7777777777665
No 179
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.27 E-value=0.31 Score=50.54 Aligned_cols=322 Identities=14% Similarity=0.196 Sum_probs=178.5
Q ss_pred HhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036287 29 GKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK--VKDTVCWTAMIDGLVRNGEMARALDLF 104 (488)
Q Consensus 29 ~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 104 (488)
.+.|+.++|..+++.... .+|..+...+-.+|...|+.++|..++++.. .|+......+..+|++-+.+.+-.+.-
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999988877654 3367788888899999999999999999876 345455556667788887776655444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC----------chHHHHHHHHHHHHcC-CCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036287 105 REMQRDNVRPNEVTIVCVLSACSQLG----------ALELGRWIHSYMGKHR-IDLNHIVGGALINMYSRCGDIDKALQV 173 (488)
Q Consensus 105 ~~m~~~g~~p~~~t~~~ll~~~~~~~----------~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~ 173 (488)
-+|.+. .+-+...|-++++...+.- -+..|....+.+++.+ .-.+..=.-.-.......|++++|..+
T Consensus 134 ~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~ 212 (932)
T KOG2053|consen 134 LQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEF 212 (932)
T ss_pred HHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHH
Confidence 444442 4456666767776654432 1234555566655543 111111111112334557778888887
Q ss_pred HHh-----cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------------CCCH------------
Q 036287 174 FEE-----MKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI-------------------RPTK------------ 217 (488)
Q Consensus 174 ~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------------~p~~------------ 217 (488)
+.. ...-+...-+--+..+...+++.+..++-.++...|. .|-.
T Consensus 213 l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~ 292 (932)
T KOG2053|consen 213 LAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDEC 292 (932)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHH
Confidence 732 1122333333334444444444444444444444321 1100
Q ss_pred -------------HHHHHHHHHHh---ccCCHHHHHHHHHhcccccCccc----ChhhH---------HHHHHHHHhc--
Q 036287 218 -------------VTFVGVLNACS---HGGLVDLGFEIFQSMTRDYGIEP----QIEHY---------GCIVDLLSRV-- 266 (488)
Q Consensus 218 -------------~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p----~~~~~---------~~li~~~~~~-- 266 (488)
.+|.+-+.+.. .-|+.+++...|-+ .+|-.| |..+| ..+++.+...
T Consensus 293 ~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~---kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~ 369 (932)
T KOG2053|consen 293 IEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK---KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADD 369 (932)
T ss_pred HHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH---HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCC
Confidence 11111122211 12444444333221 112222 11111 2233333222
Q ss_pred ----------------------CChH-----HHHHHHHhC------C------CCCC---------HHHHHHHHHHHHHh
Q 036287 267 ----------------------GRPE-----EAYDFITNM------K------IAPD---------HIMLGSLLSACKIH 298 (488)
Q Consensus 267 ----------------------g~~~-----~A~~~~~~m------~------~~p~---------~~~~~~ll~~~~~~ 298 (488)
|.++ .-..++++. + .-|+ .-+.+.|+..|.+.
T Consensus 370 ~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rkt 449 (932)
T KOG2053|consen 370 DSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKT 449 (932)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhc
Confidence 2111 111111111 1 1222 12345677788888
Q ss_pred CChh---HHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCC
Q 036287 299 GKLQ---LGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354 (488)
Q Consensus 299 g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 354 (488)
++.. +|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.|.-+.|+.+.
T Consensus 450 nd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 450 NDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred CcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 7754 6777778888888999988899999999999999999999999888777553
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.0011 Score=47.38 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=48.3
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
..+...++++.|.++++++++.+|.++..+...+.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888999999999999999988888888999999999999999988888754
No 181
>PRK15331 chaperone protein SicA; Provisional
Probab=97.23 E-value=0.0043 Score=51.05 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=76.5
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChH
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWK 336 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 336 (488)
..--+-..|++++|..+|+-+ -..| |..-|..|...+...++++.|...+..+..++++|+..+.....+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 334455789999999999887 2222 56678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 036287 337 EAVQIRAKMKE 347 (488)
Q Consensus 337 ~a~~~~~~m~~ 347 (488)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998766
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.23 E-value=0.034 Score=50.23 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC--CC-HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 55 VMINCYVEHGLVENAFEVFSRVKV--KD-TV---CWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~~--~~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
.....+.+.|++++|.+.|+.+.. |+ .. +.-.++.+|.+.+++++|+..|++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445555667777777777777652 21 11 1234556677777777777777777764
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0036 Score=56.27 Aligned_cols=99 Identities=24% Similarity=0.272 Sum_probs=80.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcC
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVG 267 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 267 (488)
.-+.+.+++++|+..|.+.++. .| |.+-|..=..+|++.|..+.|.+-.+..+ .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 3466789999999999999984 55 55556666788999999999998888776 45665 689999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036287 268 RPEEAYDFITNM-KIAPDHIMLGSLLS 293 (488)
Q Consensus 268 ~~~~A~~~~~~m-~~~p~~~~~~~ll~ 293 (488)
++++|++.|++. .+.|+-.+|-.=|.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999999987 88898777654443
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.22 E-value=0.019 Score=57.81 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=24.1
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
..|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++.
T Consensus 432 ~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 432 VKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555442 2344445555555555555555555555443
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.21 E-value=0.0081 Score=58.13 Aligned_cols=122 Identities=11% Similarity=0.085 Sum_probs=92.1
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-CcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHH
Q 036287 211 QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHI 286 (488)
Q Consensus 211 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~ 286 (488)
.+.+.+...+..+++.+....+++.+..++.+....- ....-..+..++|..|...|..++++++++.= |+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456677788888888888888888888887776431 11122344458899999999999999988765 8889999
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC-CCCchhHHHHHHHHhcC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCR-SADSGTYVLLSNAYASS 332 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 332 (488)
+++.|+..+.+.|++..|.+++..|...+ ..++.++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999988888876644 56667777666666555
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.21 E-value=0.061 Score=44.98 Aligned_cols=97 Identities=16% Similarity=0.071 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHHHHHHH
Q 036287 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RDVTTYNSL 188 (488)
Q Consensus 114 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 188 (488)
|+...-..+..+....|+..+|...|++....-+..|..+...+.++....++...|...++.+-+ ++..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 333333344444444444444444444444333333444444444444444444444444443322 111222233
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 036287 189 IAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~ 210 (488)
...|...|++.+|...|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 3344444444444444444443
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.19 E-value=0.029 Score=55.54 Aligned_cols=226 Identities=16% Similarity=0.166 Sum_probs=126.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 97 (488)
...+.+-+.-|...|.+++|.++----. ...-|..|..--...-+++-|++.+.+.. .-.+
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgV---v~~DW~~LA~~ALeAL~f~~ARkAY~rVR----------------dl~~ 616 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGV---TDTDWRELAMEALEALDFETARKAYIRVR----------------DLRY 616 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccce---ecchHHHHHHHHHhhhhhHHHHHHHHHHh----------------ccHH
Confidence 3344444555666777777665411100 12235555444333444444444443322 2234
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|.+ .|.+ |..+.+|.....+|.|.++...-
T Consensus 617 L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcC
Confidence 4455567888888888887654 3456677888888888764 3432 34567777777777777776543
Q ss_pred cc-------CCHHHH-------HHHHHHHHhcCChhHHHHHHHH------HHHcCC---CCCHHHHHHHHHHHhccCCHH
Q 036287 178 KE-------RDVTTY-------NSLIAGLAMHGRSIEAVEMFRE------MINQGI---RPTKVTFVGVLNACSHGGLVD 234 (488)
Q Consensus 178 ~~-------~~~~~~-------~~li~~~~~~g~~~~A~~l~~~------m~~~g~---~p~~~t~~~ll~a~~~~g~~~ 234 (488)
.. +-...| .+....+...|+.++|..+.-+ +.+-+- ..+..+...+...+-+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 21 011111 1233344556776666655321 112111 223445555555555667777
Q ss_pred HHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036287 235 LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD 284 (488)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 284 (488)
.|-++|.+|-. ...++++....+++++|..+-++. ...||
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 78888887753 235677888888999998888887 34444
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.18 E-value=0.032 Score=51.91 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=65.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHhcccccCcccC----hhhHHHHHHH
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG-GLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDL 262 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 262 (488)
.+..|...|++..|-+.+.+ +...|... |++++|.+.|....+-+.-... ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34455555555555444443 44556666 7888888888777643222111 3455667778
Q ss_pred HHhcCChHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 263 LSRVGRPEEAYDFITNMK---I-----APDHI-MLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
+.+.|++++|.++|++.. . +.++. .+-..+-.+...||...|.+.+++....+|
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888888761 1 11121 122223345566888888888888887765
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0059 Score=55.15 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=86.4
Q ss_pred ccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---CChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 250 EPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH---GKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 250 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
+-|...|-.|...|.+.|+++.|..-|.+. .+.| |+..+..+..++... ....++..++++++..+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456889999999999999999999999887 4444 467777777766544 34578999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
|...+...|++.+|...++.|.+..-.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999886543
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.2 Score=50.35 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=19.7
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 036287 147 IDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180 (488)
Q Consensus 147 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 180 (488)
++.+....-.+.+|+.+.|.-++|.+.|-+-..|
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p 881 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP 881 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence 3445555555666666666666666666554443
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.12 E-value=0.0054 Score=46.68 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHhcccccCcccChh
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPTKVTFVGVLNACSHGG--------LVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+++.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666667999999999999999998 899999999988766532 244566777777754 7777777
Q ss_pred hHHHHHHHHHh
Q 036287 255 HYGCIVDLLSR 265 (488)
Q Consensus 255 ~~~~li~~~~~ 265 (488)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.25 Score=46.53 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=59.3
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFE 238 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 238 (488)
.-+...|+...|.++-.+..-||-.-|...+.+|+..+++++-.++-.. +-.++.|-.++.+|...|...+|..
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 3344556666666666666666666666666666666666655443221 1123556666666666666666666
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
+...+. +..-+.+|.++|++.+|.+.--+
T Consensus 259 yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 259 YIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 655522 13345666666666666555433
No 193
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.12 E-value=0.088 Score=50.04 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=106.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC-------CHHHHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKER-------DVTTYNSLIAGLAM---HGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
.|+-.|....+++...++++.+... ....--...-++.+ .|+.++|++++..+......++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688889999999999888763 11222234445566 7899999999999776667788888877766
Q ss_pred HHhc---------cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHH----HHHH---HhC-------CCC
Q 036287 226 ACSH---------GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA----YDFI---TNM-------KIA 282 (488)
Q Consensus 226 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~m-------~~~ 282 (488)
.|-. ....++|...|.+.- .+.|+..+--.++..+...|...+. .++- ..+ .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 234677777777654 4456654443444445445542222 2222 111 122
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 283 PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 283 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
.|-.-+.+++.++.-.|+.+.|.+.++++.++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3566678899999999999999999999999887663
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.11 E-value=0.073 Score=48.11 Aligned_cols=174 Identities=13% Similarity=0.037 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc--CCH-HH---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE--RDV-TT---YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
.....+.+.|++++|.+.|+++.. |+. .. .-.++.+|.+.+++++|...|++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455667888888888888765 221 22 234566778888899999999888875332223334334443331
Q ss_pred --cC---------------C---HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 036287 230 --GG---------------L---VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLG 289 (488)
Q Consensus 230 --~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 289 (488)
.+ + ...|...|+.+ ++-|-...-..+|..-+..+...- ..---
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l----------------i~~yP~S~ya~~A~~rl~~l~~~l-a~~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL----------------VRGYPNSQYTTDATKRLVFLKDRL-AKYEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHH----------------HHHCcCChhHHHHHHHHHHHHHHH-HHHHH
Confidence 10 1 12233333333 333333334445544333331000 01111
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 290 SLLSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 290 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.+..-|.+.|.+..|..-++.+++.-|.. ..+...+..+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34556888899999999999999876654 4566788899999999999998877654
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.07 E-value=0.0052 Score=52.79 Aligned_cols=97 Identities=14% Similarity=0.303 Sum_probs=70.6
Q ss_pred HHHHHhc--ccCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 036287 171 LQVFEEM--KERDVTTYNSLIAGLAMH-----GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG------------- 230 (488)
Q Consensus 171 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 230 (488)
...|+.. ..+|-.+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455555 456777888888877654 66777778888888889999999999988876542
Q ss_pred ---CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC
Q 036287 231 ---GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 231 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 268 (488)
.+.+-|.+++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234667777888875 4888888888888877766554
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.06 E-value=0.28 Score=46.07 Aligned_cols=300 Identities=18% Similarity=0.175 Sum_probs=193.3
Q ss_pred hHHHHHHHhhCCCCCceeeHHHHHHHHH--HcCCHHHHHHHHhhcC---CCCHHHHHHHHH--HHHHcCCHHHHHHHHHH
Q 036287 34 FKDAMQLFDEMPECNDVVASTVMINCYV--EHGLVENAFEVFSRVK---VKDTVCWTAMID--GLVRNGEMARALDLFRE 106 (488)
Q Consensus 34 ~~~A~~~~~~m~~~~~~~~~~~li~~~~--~~g~~~~A~~~f~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~ 106 (488)
...+.+.|..-.. -..|.+|-.++. -.||-..|.++-.+-. ..|....-.|+. +-.-.|+++.|.+-|+.
T Consensus 69 P~t~~Ryfr~rKR---drgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeA 145 (531)
T COG3898 69 PYTARRYFRERKR---DRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEA 145 (531)
T ss_pred cHHHHHHHHHHHh---hhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 3344444444332 234566655553 4577778877765533 345554444444 33457999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC
Q 036287 107 MQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RD 181 (488)
Q Consensus 107 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~ 181 (488)
|... ...-..-+..+.-..-+.|+.+.|+++-+..-..- +.-...+.+++...+..|+++.|+++++.-.. +|
T Consensus 146 Ml~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 146 MLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 9763 11111222333344467899999998888776654 33356778899999999999999999987553 44
Q ss_pred HH--HHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHhcccccCcccChhh
Q 036287 182 VT--TYNSLIAGLAM---HGRSIEAVEMFREMINQGIRPTKVTF-VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEH 255 (488)
Q Consensus 182 ~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 255 (488)
+. .--.|+.+-+. .-+...|...-.+..+ +.||-+.- .....++.+.|++.++-.+++.+.+. .|.+..
T Consensus 224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~i 298 (531)
T COG3898 224 VAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDI 298 (531)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHH
Confidence 42 22333433221 2345666666555554 66775433 23446788999999999999999854 555554
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM----KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
+.. -.+.+.|+ .+.+=+++. .++|| ..+-..+..+-...|++..|..-.+.+....|.. ..|..|.+.-.
T Consensus 299 a~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIee 373 (531)
T COG3898 299 ALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEE 373 (531)
T ss_pred HHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHh
Confidence 332 22344554 333333322 45564 6677778888889999999999999888888866 68888888765
Q ss_pred -cCCChHHHHHHHHHHHhC
Q 036287 331 -SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 -~~g~~~~a~~~~~~m~~~ 348 (488)
..|+-.++...+.+..+.
T Consensus 374 AetGDqg~vR~wlAqav~A 392 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccCchHHHHHHHHHHhcC
Confidence 459999988887766543
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.05 E-value=0.0017 Score=45.73 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCC
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHG-KLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 316 (488)
+...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777888888888888888888877 44554 677888888888888 79999999999988876
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0012 Score=46.31 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=28.0
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 265 RVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 265 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
..|++++|+++|+++ ...| +...+..+..+|...|++++|..+++++....|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 345555555555554 2222 34455555555555555555555555555555554
No 199
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.52 Score=47.99 Aligned_cols=315 Identities=13% Similarity=0.098 Sum_probs=179.0
Q ss_pred hCCCCchhhH-----HHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcC---CHHHHHHHHhhcCC--C
Q 036287 12 LGLRSNRSTR-----LKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHG---LVENAFEVFSRVKV--K 79 (488)
Q Consensus 12 ~g~~~~~~~~-----~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g---~~~~A~~~f~~~~~--~ 79 (488)
.|+..+..-| ..+++-+...+.+..|.++-..+..+- ...++.....-+.+.. +-+-+..+=+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 3544444433 345667777888888888877766543 1234444455555542 33334444445554 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC---------
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNV----RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR--------- 146 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--------- 146 (488)
..++|....+.-.+.|+++-|..+++.=...+. -.+..-+...+.-+...|+.+...+++-.+.+.-
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888999888887754222211 0122334556667777788777777666554421
Q ss_pred --CCCcHhHHHHHHH---------HHHhcCCHHHHHHHHH--hcc-----cCCHHHHHHHHHHHHhcCC----------h
Q 036287 147 --IDLNHIVGGALIN---------MYSRCGDIDKALQVFE--EMK-----ERDVTTYNSLIAGLAMHGR----------S 198 (488)
Q Consensus 147 --~~~~~~~~~~li~---------~y~~~g~~~~A~~~~~--~~~-----~~~~~~~~~li~~~~~~g~----------~ 198 (488)
.+....+|.-++. .|-.. +-..+...|. ... +.-........+.+++... .
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~-dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQD-DNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcc-cchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 1111122221111 11111 1111111111 000 0111112223333433322 1
Q ss_pred hHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHH
Q 036287 199 IEAVEMFREMIN-QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFIT 277 (488)
Q Consensus 199 ~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 277 (488)
.+-+.+.+.+.. .|......|.+-.+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 112222233322 2333444556666667777888888888877665 5788888888888999999998888888
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 278 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.+. .+.-|.-...+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.++--
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 763 245566788889999999998887765521 1256778888899888887643
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.94 E-value=0.15 Score=42.82 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCc-ccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHH
Q 036287 213 IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGI-EPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP---DHIM 287 (488)
Q Consensus 213 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~ 287 (488)
..|+...-..|..+....|+..+|...|.+... |+ .-|....-.+..+....+++.+|...++++ ...| ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666777788888888888888887774 43 445666667777777788888888888776 2223 2344
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.-.+...+...|....|+..|+.++..-|.- ..-......+++.|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5556778888899999999999998876532 4444555677888887777665555443
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.86 E-value=0.01 Score=54.15 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHH
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLL 325 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 325 (488)
..|..-+..+.+.|++++|...|+.+ ...|+ ...+..+..++...|+++.|...|+.+++..|.+ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 44555565556678888888888777 33343 2456667788888888999998888888876654 4455566
Q ss_pred HHHHhcCCChHHHHHHHHHHHhC
Q 036287 326 SNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+.+|...|++++|.++++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77788888899999888887653
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.83 E-value=0.0039 Score=51.56 Aligned_cols=69 Identities=26% Similarity=0.370 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH-----hCCCccCC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK-----EAGVQKEP 354 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 354 (488)
.....++..+...|+++.|...++.++..+|.+...|..++.+|...|+..+|.++|+.+. +.|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 3456677778899999999999999999999999999999999999999999999999874 34776644
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.24 Score=49.82 Aligned_cols=187 Identities=12% Similarity=0.092 Sum_probs=103.1
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCC--------HHHHHHHHHHHHhcCchHHH
Q 036287 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQR-DNVRPN--------EVTIVCVLSACSQLGALELG 135 (488)
Q Consensus 65 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~--------~~t~~~ll~~~~~~~~~~~a 135 (488)
.+++|.+..+. .|.+..|..|...-.+.-.++-|...|-+... .|++.- ...-..-++ +--|.+++|
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 35555555554 44567888888777777777777777765533 232210 001111112 234788888
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--C---HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 136 RWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER--D---VTTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 136 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
++++-.+-++. ..+.++.+.|++-...++++.-... | ..+|+.+...++....+++|.+.|..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887776553 3467778888888777777653321 1 24677777777777777777766654321
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 211 QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 211 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
. ...+.++.+..++++-+.+-..+.+ +....-.+.+++.+.|.-++|.+.+-+-
T Consensus 825 ~---------e~~~ecly~le~f~~LE~la~~Lpe------~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 825 T---------ENQIECLYRLELFGELEVLARTLPE------DSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred h---------HhHHHHHHHHHhhhhHHHHHHhcCc------ccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 0 1133444444444444444333322 2333444555555555555555555443
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.80 E-value=0.025 Score=44.57 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=50.9
Q ss_pred HHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---CchhHHHHHHHHhc
Q 036287 260 VDLLSRVGRPEEAYDFITNM---KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA---DSGTYVLLSNAYAS 331 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 331 (488)
..++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.....|. +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455566666666666654 22221 234445666667777777777777777665555 44444555566667
Q ss_pred CCChHHHHHHHHHH
Q 036287 332 SGKWKEAVQIRAKM 345 (488)
Q Consensus 332 ~g~~~~a~~~~~~m 345 (488)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 77777777665443
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.80 E-value=0.018 Score=49.58 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=63.1
Q ss_pred HHHHhhc--CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------------
Q 036287 70 FEVFSRV--KVKDTVCWTAMIDGLVRN-----GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQL------------- 129 (488)
Q Consensus 70 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 129 (488)
...|++. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445555 456777777777777654 55555666777788888888888888888765431
Q ss_pred ---CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 130 ---GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 130 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
.+-+-|.+++++|...|+-||..++..|++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 123456666777777777777777766666665444
No 206
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.75 E-value=0.0011 Score=39.02 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 308 AKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 308 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.69 E-value=0.093 Score=46.06 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHcCCHHHHHHHHhhcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 58 NCYVEHGLVENAFEVFSRVKV--K----DTVCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 58 ~~~~~~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
..+...|++++|.+.|+.+.. | -..+.-.++.++.+.|++++|...|+++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455556666555555541 1 1224445566666666666666666666553
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.011 Score=56.85 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDH----IMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
...++.+..+|.+.|++++|+..|++. .+.|+. ..|..+..+|...|+.++|...++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666667777777777776664 555552 34666666667777777777777777665
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.54 E-value=0.0048 Score=38.92 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
.+|..+..++...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999888777653
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.22 Score=44.14 Aligned_cols=230 Identities=13% Similarity=0.048 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCc-hH-HHHHHHHHHHHc-CCCCcHhHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC-SQLGA-LE-LGRWIHSYMGKH-RIDLNHIVGGA 156 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~-g~~~~~~~~~~ 156 (488)
...|+.-+..+++....++|..-+..+...+ .||- -|...=..| .+.|. .. ..+.+|..+... |. -++.
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pqes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Ccce-eeeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cHHH
Confidence 4467777778888888888876666554432 1221 010000000 11222 11 122334444332 22 1456
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc--CCH--------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE--RDV--------TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
|...|.-...+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+..+...+.+......|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 66666655555555555544322 122 23456666677777888888888888887666677777788888
Q ss_pred HhccCCHHHHHHHHHhcccccCcccChhhHH-----HHHHHHHhcCChHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHhC
Q 036287 227 CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYG-----CIVDLLSRVGRPEEAYDFITNMKIA-P-DHIMLGSLLSACKIHG 299 (488)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~ll~~~~~~g 299 (488)
-.+.|+.+.|..+|+...+. .-..+....+ .....|.-++++.+|...+.+.... | |+...|.-.-...-.|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 88889999998888877643 2222222222 3333455566777777777666322 2 2333333222333456
Q ss_pred ChhHHHHHHHHHHhcCCCC
Q 036287 300 KLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~~p~~ 318 (488)
+...|.+..+.+.+..|..
T Consensus 301 ~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 6777777777777766543
No 211
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.66 Score=44.02 Aligned_cols=250 Identities=11% Similarity=-0.019 Sum_probs=132.4
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHH
Q 036287 26 ELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 26 ~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 100 (488)
..+-+...+.+|+..+....+ ++++.-|..-...+...|++++|.--.++-. ........-.-.++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344455556666666554433 3345556666666677777777665443322 11111111122222222222222
Q ss_pred HHHH---------------HHHHHCC-CCCCHHHHHHHHH-HHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 101 LDLF---------------REMQRDN-VRPNEVTIVCVLS-ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 101 ~~~~---------------~~m~~~g-~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
.+.| +...... -+|.-.++..+-. .+...++.+.|.++-..+++.. ..+....-.-..++--
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence 2222 2111111 1233344444432 3466778888888777776654 1122111111123334
Q ss_pred cCCHHHHHHHHHhcccCCHH---------------HHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHH
Q 036287 164 CGDIDKALQVFEEMKERDVT---------------TYNSLIAGLAMHGRSIEAVEMFREMINQ---GIRPTKVTFVGVLN 225 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~ 225 (488)
.++.+.|...|++...-|+. .|..-.+-..+.|++.+|.+.|.+.+.. ++.|+...|.....
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 57788888888887653221 2333344466788888888888888763 24455555666666
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
+..+.|+.++|..-.+... .+.|. +..|..-..++.-.++|++|.+-+++.
T Consensus 296 v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred hhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888887776665 33333 233333344555567788887777765
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.47 E-value=0.19 Score=49.64 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 100 (488)
.+.+++.+-+.|..+.|+++- .--..-.....++|+++.|.++-++.. +...|..|.....++|+++-|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV---------TDPDHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS---------S-HHHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhc---------CChHHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 566666666666666666662 222344455566677777766665554 455677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036287 101 LDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176 (488)
Q Consensus 101 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 176 (488)
.+.|++... +..++-.|.-.|+.+.-.++.......| . ++....++...|++++..+++.+
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 777665432 3445555555666666666655555554 1 22333333444555555555443
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.44 E-value=0.013 Score=41.62 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhH
Q 036287 261 DLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 322 (488)
..|.+.+++++|.++++.+ ...| +...|......+...|+++.|...++++++..|.++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888899999888887 5555 466777788888999999999999999999988775443
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.36 E-value=0.93 Score=42.73 Aligned_cols=59 Identities=12% Similarity=-0.021 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH-hCChhHHHHHHHHHHh
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKI-HGKLQLGEQIAKRLLD 313 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~ 313 (488)
.-..+..+-...|++..|..--+.. ...|....|..|...-.. .||-.++...+.+.++
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3334444444455555444433333 334444555444443322 2555555555555544
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.33 E-value=0.052 Score=43.23 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=25.7
Q ss_pred CcccChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 036287 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPDHIMLGSLLSAC 295 (488)
Q Consensus 248 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~ 295 (488)
...|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455555555555555555555555555544 3433455555555543
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.29 E-value=0.055 Score=49.35 Aligned_cols=101 Identities=10% Similarity=0.099 Sum_probs=63.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLL 292 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 292 (488)
.|...+......|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444344456677777777766654211110 235556677777777777777777766 22222 44555566
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
..+...|+.+.|...++.+++..|.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788889999999998888888764
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.11 Score=47.11 Aligned_cols=98 Identities=11% Similarity=-0.031 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc--C-CHHHHHHHHHhccc---CCHHHHH
Q 036287 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC--G-DIDKALQVFEEMKE---RDVTTYN 186 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g-~~~~A~~~~~~~~~---~~~~~~~ 186 (488)
+-|...|..+..+|...|+.+.|..-|....+.. +++...+..+..++... | ...++..+|+++.. .|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3455566666666666666666666666555543 23333444443332221 1 34456666766654 2445555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQ 211 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~ 211 (488)
-+...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666777778888888888877775
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.15 E-value=0.051 Score=43.28 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh
Q 036287 212 GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR 265 (488)
Q Consensus 212 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 265 (488)
...|+..+..+++.+|+..|++..|.++.+...+.|+++.+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999988888899888875443
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.13 E-value=0.5 Score=37.33 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=84.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHH
Q 036287 193 AMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 272 (488)
.-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-+.+.|-.. .-.++..|++.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~N-lKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGN-LKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcc-hHHHHHHHHHhcc----
Confidence 3467778888888887764 2344455555444444455556666666655444433211 1233444444432
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 273 YDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 273 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
+..-....+......|.-+.-.+++..+.+.+.++|....-+.++|.+.|+..++.+++++.-++|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445566778889999999999999998766778889999999999999999999999999999885
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.89 Score=40.07 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHhCChhHHHHHHHHHHhc----CCCCchhHH
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNMK-------IAPDH-IMLGSLLSACKIHGKLQLGEQIAKRLLDC----RSADSGTYV 323 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~ 323 (488)
|..+...|.+..++++|-..+.+-+ --|+. ..+.+.+-.+.-..++..|++.++.-.+. +|.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3444456667777777666555441 11222 22444444555667888888888886553 366777888
Q ss_pred HHHHHHhcCCChHHHHHHH
Q 036287 324 LLSNAYASSGKWKEAVQIR 342 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~ 342 (488)
.|+.+| ..|+.+++.++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 888877 567777776654
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.11 Score=49.10 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=70.0
Q ss_pred HHHHhcCChHHHHHHHHhC--------CCC---------CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 261 DLLSRVGRPEEAYDFITNM--------KIA---------PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m--------~~~---------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
..|.+.|++..|..-|++. +.. .-..++..|...+.+.+++..|+....+.++++|+|..+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3456666666666665553 111 12455677778889999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 324 LLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.-..+|...|+++.|+..|+++.+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999763
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.02 E-value=0.96 Score=39.64 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVR--PNEVTIVCVLSACSQLGALELGRWIHSYMGKHR 146 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 146 (488)
..+-.....+.+.|++.+|++.|+++...-.. --......++.++.+.|+++.|...++..++.-
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33444556677888888888888888764211 123445556677778888888888888777653
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.00 E-value=0.022 Score=41.05 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc---------CC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKE---------RD-VTTYNSLIAGLAMHGRSIEAVEMFREM 208 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 208 (488)
+++.+...|...|++++|+..|++..+ ++ ..+++.+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444445555555555544444321 01 233444455555555555555555443
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.99 E-value=0.08 Score=49.84 Aligned_cols=243 Identities=12% Similarity=0.088 Sum_probs=150.2
Q ss_pred HhHHHHHHHHhCCC---CchhhHHHHHHHHHhcCChHHHHHHHhh-------CCCC-CceeeHHHHHHHHHHcCCHHHHH
Q 036287 2 GREIHGQVLKLGLR---SNRSTRLKLVELYGKCGEFKDAMQLFDE-------MPEC-NDVVASTVMINCYVEHGLVENAF 70 (488)
Q Consensus 2 ~~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~-------m~~~-~~~~~~~~li~~~~~~g~~~~A~ 70 (488)
|..+|...++.|-+ .=..+|..|.++|.-.+++++|.+.... |-.+ +...+...|.+.+--.|.+++|.
T Consensus 36 Gv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~ 115 (639)
T KOG1130|consen 36 GVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEAL 115 (639)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHH
Confidence 56678888888732 1234577778888888899999876321 2111 12344455556666667777776
Q ss_pred HHHhh-cC------CC--CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH----HCCCC-CCH
Q 036287 71 EVFSR-VK------VK--DTVCWTAMIDGLVRNGE--------------------MARALDLFREMQ----RDNVR-PNE 116 (488)
Q Consensus 71 ~~f~~-~~------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~----~~g~~-p~~ 116 (488)
-.-.+ +. .+ ...++..|...|...|+ ++.|.+.|.+=+ +.|-. .-.
T Consensus 116 ~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqG 195 (639)
T KOG1130|consen 116 TCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQG 195 (639)
T ss_pred HHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 54322 21 11 23355567777766553 123444443211 11100 011
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHH----cCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc-------cC--CH
Q 036287 117 VTIVCVLSACSQLGALELGRWIHSYMGK----HRI-DLNHIVGGALINMYSRCGDIDKALQVFEEMK-------ER--DV 182 (488)
Q Consensus 117 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~ 182 (488)
..|..+.+.|.-+|+++.|...|+.-+. .|- ......++.|.++|.-.|+++.|.+.|+.-. .+ ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 2344455555567789999888876433 231 1234567788999999999999999887643 23 33
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQ-----GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.+..+|.+.|.-...+++|+.++.+-..- ...-....+.+|..++...|..++|+.+.....
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56777888888888899999988775431 122345678889999999999999988766554
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.94 E-value=0.28 Score=48.97 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=80.0
Q ss_pred HHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC---------
Q 036287 8 QVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKV--------- 78 (488)
Q Consensus 8 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------- 78 (488)
.+.++|-.|+... +...++-.|.+.+|-++|.+--..+ .-+..|.....++.|.++...-..
T Consensus 625 ~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en------RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 625 ERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN------RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred HHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh------hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 3455666666543 3445556778888888876644432 334445445555555555433210
Q ss_pred CCHHHHH-----HHHHHHHHcCCHHHHHHHHHH------HHHCCC---CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 036287 79 KDTVCWT-----AMIDGLVRNGEMARALDLFRE------MQRDNV---RPNEVTIVCVLSACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 79 ~~~~~~~-----~li~~~~~~g~~~~A~~~~~~------m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 144 (488)
+-..+++ +....+...|+.++|+.+.-+ +..-+- ..+..+...+..-+.+...+..|.++|..|-.
T Consensus 696 RA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD 775 (1081)
T KOG1538|consen 696 RADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD 775 (1081)
T ss_pred HHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc
Confidence 0011111 223334455666665544311 111111 12334444444445555666677777766543
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 036287 145 HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179 (488)
Q Consensus 145 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 179 (488)
. ..++++....+++++|..+-++.++
T Consensus 776 ~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 776 L---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred H---------HHHhhheeecccchHhHhhhhhCcc
Confidence 2 2466777777888888877777765
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.86 E-value=0.017 Score=41.72 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhc----CCC---CchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDC----RSA---DSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.+++.+...+...|++++|+..+++.++. ++. -..++..++.+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666677777777777777766652 221 13466677777888888888887777654
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.81 E-value=1.2 Score=39.01 Aligned_cols=192 Identities=20% Similarity=0.208 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKE-----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN- 225 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 225 (488)
.........+...+.+..+...+..... .....+......+...+++.++...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3444455555555555555555554331 2333444455555555566666666666655322221 11111122
Q ss_pred HHhccCCHHHHHHHHHhcccccCccc----ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHh
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEP----QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD--HIMLGSLLSACKIH 298 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~ 298 (488)
++...|+++.+...+..... ..| ....+......+...++.++|...+... ...|+ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 55566666666666666532 222 2233333333455666777777776666 33333 45666666677777
Q ss_pred CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++.+.|...+.......|.....+..+...+...|.++++...+....+
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777766444555555555566667777777666654
No 228
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=3.6 Score=47.90 Aligned_cols=317 Identities=11% Similarity=0.062 Sum_probs=175.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhC----CCCCceee-HHHHHHHHHHcCCHHHHHHHHhh-cCCCCHHHHHHHHHHHHHcCC
Q 036287 23 KLVELYGKCGEFKDAMQLFDEM----PECNDVVA-STVMINCYVEHGLVENAFEVFSR-VKVKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m----~~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~ 96 (488)
.|..+=.+|+.+..|.-.+++- .+.+.... +-.+...|+..+++|...-+... ...++. ...|...-..|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4555667899999999999883 22222223 33444488888888887777663 334433 234555667899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH-HHHHHHhcCCHHHHHHHHH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA-LINMYSRCGDIDKALQVFE 175 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~ 175 (488)
+..|...|+++.+.+ ++...+++.++..-...+.++...-..+.....- .+...-+++ =+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999875 4447788888887777888777766544443332 233333333 2444466777777766655
Q ss_pred hcccCCHHHHHHH-H-HHHHhc--CChhHHHHHHHHHHHcCCCC-C--------HHHHHHHHHHHhccCCHHHHHHHHHh
Q 036287 176 EMKERDVTTYNSL-I-AGLAMH--GRSIEAVEMFREMINQGIRP-T--------KVTFVGVLNACSHGGLVDLGFEIFQS 242 (488)
Q Consensus 176 ~~~~~~~~~~~~l-i-~~~~~~--g~~~~A~~l~~~m~~~g~~p-~--------~~t~~~ll~a~~~~g~~~~a~~~~~~ 242 (488)
..+..+|.+. + ....+. .+.-.-.++.+.+.+.-+.| . ...|..++....-. +.+.-.+....
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKK 1618 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 5566666655 2 222221 22212223333333221111 0 01122222211110 01111111111
Q ss_pred cccccCcccChhhHHH---HHHHHHhcCChHHHHH-HHHhCCCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 243 MTRDYGIEPQIEHYGC---IVDLLSRVGRPEEAYD-FITNMKIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 243 ~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~-~~~~m~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
........-+..-|.. ..+.+.+...+=-|.+ .+.....+|+ ..+|-...+.++..|.++.|...+-.+.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 1110011111111211 1222222111111111 1111122332 67899999999999999999999888888
Q ss_pred cCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 314 CRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 314 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
..++ ..+.-.+......|+...|+.++++-.+...
T Consensus 1699 ~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1699 SRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 7744 5788899999999999999999998876544
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=1.6 Score=39.75 Aligned_cols=174 Identities=13% Similarity=0.107 Sum_probs=108.9
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccC
Q 036287 169 KALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG 248 (488)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 248 (488)
...+.+++...+....--.........|+..+|..+|+...... +-+......+..+|...|+.+.|..++..+-.+
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-- 197 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-- 197 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--
Confidence 33444444444322222223345667888889999998888752 223445556778888889999999988887642
Q ss_pred cccC-hhhHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--CCCchhHHH
Q 036287 249 IEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNMKIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR--SADSGTYVL 324 (488)
Q Consensus 249 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~ 324 (488)
..-+ ......-+..+.+.....+..++-.+..-.| |...-..+...+...|+.+.|...+-.+++.+ -.+...-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 1111 1122334566666666666666666664456 56666677778888888888888777776643 455677777
Q ss_pred HHHHHhcCCChH-HHHHHHHHH
Q 036287 325 LSNAYASSGKWK-EAVQIRAKM 345 (488)
Q Consensus 325 l~~~~~~~g~~~-~a~~~~~~m 345 (488)
|+..+.-.|.-+ .+.+.+++|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 888777777433 344444444
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.17 Score=47.89 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=82.5
Q ss_pred HHHHHcCCHHHHHHHHhhcC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036287 58 NCYVEHGLVENAFEVFSRVK------------------VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI 119 (488)
Q Consensus 58 ~~~~~~g~~~~A~~~f~~~~------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 119 (488)
+.|.+.|++..|..-|++.. ..-..+++.|..+|.+.+++.+|++.-.+.+..+ ++|.-.+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 34566666666666665532 1123467888888999999999999999888875 6778888
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH-HHHHHhcc
Q 036287 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA-LQVFEEMK 178 (488)
Q Consensus 120 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~ 178 (488)
.--..++...|+++.|+..|+.+++.. +.|..+-+.|+.+-.+....... .++|..|-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888899999999999999988875 44555555666555544443332 44555543
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.66 E-value=1.5 Score=41.98 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCC---C----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036287 53 STVMINCYVEHGLVENAFEVFSRVKVK---D----TVCWTAMIDGLVR---NGEMARALDLFREMQRDNVRPNEVTIVCV 122 (488)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 122 (488)
-..++-.|....+++...++++.+... + ...--...-++.+ .|+.++|++++..+....-.+++.||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334445577777788888887777633 1 1111123334455 67788888888775555556777777776
Q ss_pred HHHH
Q 036287 123 LSAC 126 (488)
Q Consensus 123 l~~~ 126 (488)
.+.|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6655
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.65 E-value=0.092 Score=43.28 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH-----HcCCCCcHhHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMG-----KHRIDLNHIVG 154 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-----~~g~~~~~~~~ 154 (488)
+...++..+...|++++|+.+.+++.... |.|...+..++.++...|+...|.++|..+. +.|++|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45566677778888888888888888764 5577788888888888888888888887764 34777776543
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.45 E-value=0.1 Score=50.44 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh----hHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 216 TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE----HYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 216 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
+...++.+..+|...|++++|...|+... .+.|+.. .|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556666677777777777777777766 3355532 3666777777777777777776665
No 234
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=3.7 Score=42.20 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLL 263 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 263 (488)
+.+--+.-+...|+..+|.++-++.+ -||...|..=+.+++..+++++-+++-.+... +.-|.-.+..+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHH
Confidence 34444555666778888877766653 47777777777788888888777776655542 34455567778
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 264 SRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
.+.|+.++|.+.+-+.+-.+ -...+|...|++.+|.+..-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 88888888888877764222 34455666677766665543
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.26 E-value=1.9 Score=37.70 Aligned_cols=219 Identities=18% Similarity=0.142 Sum_probs=132.5
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 95 GEMARALDLFREMQRDNVR-PNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RIDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444455555554443211 12345555555566666666666665555542 223344455555666666666777777
Q ss_pred HHHhccc--CC-HHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 173 VFEEMKE--RD-VTTYNSLIA-GLAMHGRSIEAVEMFREMINQGIRP----TKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 173 ~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.+..... ++ ......... .+...|+++.|...|.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7666554 11 122222333 67778888888888888755 222 23333334444566778888888888777
Q ss_pred cccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 245 RDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 245 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
. .... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 K--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4 2223 3567777788888888888888888777 44444 445555555555667788999899988888775
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.16 E-value=0.16 Score=45.55 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=80.3
Q ss_pred HHHHHHHhcc--cCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----------
Q 036287 169 KALQVFEEMK--ERDVTTYNSLIAGLAMH-----GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG---------- 231 (488)
Q Consensus 169 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 231 (488)
..++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 67888999999888754 456667778889999999999999999998876542
Q ss_pred ------CHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChH
Q 036287 232 ------LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 232 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
+-+=+..+++.|.. +|+.||-++-..|+.++++.+..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23447888999985 699999999999999999988644
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.62 Score=42.94 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=48.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHH----HHHHHhcCChH
Q 036287 195 HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCI----VDLLSRVGRPE 270 (488)
Q Consensus 195 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 270 (488)
.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...||...|.-+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444444445444443 333444444444445555555444444444442 223333222222 22223445555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHH
Q 036287 271 EAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKR 310 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 310 (488)
+|++.-++. .+.| |...-.++...+...|+..++.+...+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555444 3332 233334444444444555555444433
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=1.6 Score=35.46 Aligned_cols=43 Identities=19% Similarity=0.049 Sum_probs=23.1
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 121 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
.++..+.+.+.......+++.+.+.+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34455555555666666666655554 24455555555555543
No 239
>PRK15331 chaperone protein SicA; Provisional
Probab=94.90 E-value=0.43 Score=39.54 Aligned_cols=87 Identities=13% Similarity=-0.056 Sum_probs=39.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 169 (488)
.+.+.|++++|..+|.-+...+ +-|..-+..+..++-..+++++|...|......+. .|+...--...+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3445555555555555554432 12233333444444445555555555555443331 122222234455555555555
Q ss_pred HHHHHHhcc
Q 036287 170 ALQVFEEMK 178 (488)
Q Consensus 170 A~~~~~~~~ 178 (488)
|+..|....
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555555443
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.83 E-value=0.43 Score=47.10 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=56.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 299 (488)
...++.-+.+.|..+.|+++...-.. -.+...+.|+++.|.++.++.. +...|..|.......|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcC
Confidence 44555555566666666654322211 1334456666666666655543 5556666666666666
Q ss_pred ChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+++.|++.+++. .-+..|+-.|...|+.+.-.++.+....+|
T Consensus 362 ~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 666666666654 234555566666666655555555444433
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.77 E-value=2.9 Score=37.38 Aligned_cols=177 Identities=14% Similarity=0.076 Sum_probs=92.1
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVKVK------DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLS 124 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 124 (488)
..|-.=+..-.+.|++++|.+.|+.+... ...+--.++-++.+.+++++|+...++..+.-..-...-|..-|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 33444444456677888888888777622 223445566677788888888888888776432222233433343
Q ss_pred HHHhc-------CchHHHHH---HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHH--HHHHHHH
Q 036287 125 ACSQL-------GALELGRW---IHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTY--NSLIAGL 192 (488)
Q Consensus 125 ~~~~~-------~~~~~a~~---~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~ 192 (488)
+.+.. .+...+.+ -++.+++.- |.+.. ..+|......+. |.... ..+..-|
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Y--------------a~dA~~~i~~~~--d~LA~~Em~IaryY 177 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-PNSRY--------------APDAKARIVKLN--DALAGHEMAIARYY 177 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHC-CCCcc--------------hhhHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33311 11222222 222222211 11111 111111111111 11111 2234567
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 193 AMHGRSIEAVEMFREMINQGIRPTK---VTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|...-.-+..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888888888888876 22222 3445566778888888887776665553
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=0.28 Score=44.03 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---CchhHHH
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-------KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA---DSGTYVL 324 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~ 324 (488)
.|+.-++.| +.|++.+|.+.|... ...||..-| |..++...|+++.|..+|..+.+..|. -+..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 466555544 556677777777765 233344444 777788888888888888888775543 4456777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhC
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
|.....+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777788888888888888877653
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.73 E-value=3.5 Score=38.17 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHhcCchH---HHHHHHHHHHHcC
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRD--------NVRPNE-----VTIVCVLSACSQLGALE---LGRWIHSYMGKHR 146 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~-----~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g 146 (488)
.||.-...+.+..+++.|...+++..+. ...|+. .++..++.++...+..+ +|..+.+.+.+..
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 3444444444333676666666554331 112222 23334444555444433 3333444442221
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 036287 147 IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179 (488)
Q Consensus 147 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 179 (488)
+..+.++..-+....+.++.+.+.+++.+|..
T Consensus 118 -~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 118 -GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred -CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 22233333334444445666666666666553
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.62 E-value=4.6 Score=39.04 Aligned_cols=126 Identities=11% Similarity=0.147 Sum_probs=86.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcccccC-cccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHH
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDYG-IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIM-LGSLLSAC 295 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~ 295 (488)
.|...+.+..+..-++.|+.+|-++.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||... -...+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4556677777777788889999888875 5 6678888888888665 56778888888754 33345443 34566666
Q ss_pred HHhCChhHHHHHHHHHHhcCCC--CchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 296 KIHGKLQLGEQIAKRLLDCRSA--DSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
..-++-+.|..+|+..++.-.. -...|..++.--..-|+...+..+-+.|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 7778888888888866553211 23567777777777777766666555554
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=94.56 E-value=0.64 Score=45.16 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcccccCcccC-hhhHHHHHHHHHh---------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 036287 233 VDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSR---------VGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK 300 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 300 (488)
.+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++. ...| |+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 46677777776643345555 3444444333321 12234555555554 3444 56666666666677777
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++.|...|+++..++|+.+.+|........-+|+.++|.+.+++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888877543
No 246
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=7 Score=40.52 Aligned_cols=152 Identities=10% Similarity=0.119 Sum_probs=97.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCC----ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 036287 25 VELYGKCGEFKDAMQLFDEMPECN----DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 25 i~~y~~~g~~~~A~~~~~~m~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 100 (488)
++-+.+.+.+++|..+-+...... ....|...|..+...|++++|-...-.|...+..-|.--+..++..++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 556777888999998887765533 2457888899999999999999988888888888888888888777766554
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH------------------HHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 101 LDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRW------------------IHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 101 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~------------------~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
..++ .......++..|..+|-.+.. .+...-.+ +..++.+. ..+..+...|+..|.
T Consensus 443 a~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 443 APYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYL 516 (846)
T ss_pred hccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHH
Confidence 3322 111112344556555555544 21111111 11111111 112234445899999
Q ss_pred hcCCHHHHHHHHHhcccCCH
Q 036287 163 RCGDIDKALQVFEEMKERDV 182 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~ 182 (488)
..+++++|...+-...++++
T Consensus 517 ~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HccChHHHHHHHHhccChHH
Confidence 99999999999888776543
No 247
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.42 E-value=5.2 Score=38.78 Aligned_cols=274 Identities=14% Similarity=0.144 Sum_probs=145.7
Q ss_pred HHhcCChHHHHHHHhhCCCCC--c------eeeHHHHHHHHHHcCCHHHHHHHHhhcCCC-CHHHHHHHHH--HHHHcCC
Q 036287 28 YGKCGEFKDAMQLFDEMPECN--D------VVASTVMINCYVEHGLVENAFEVFSRVKVK-DTVCWTAMID--GLVRNGE 96 (488)
Q Consensus 28 y~~~g~~~~A~~~~~~m~~~~--~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~--~~~~~g~ 96 (488)
+.+.+++.+|.++|.++-+.. + .+.-+.++++|...+ ++..........+. ....|-.|.. .+.+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 457889999999998876532 1 233456677776543 33333333222211 1223444443 3457788
Q ss_pred HHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC----CCcHhHHHHHH
Q 036287 97 MARALDLFREMQRD--NVRP------------NEVTIVCVLSACSQLGALELGRWIHSYMGKHRI----DLNHIVGGALI 158 (488)
Q Consensus 97 ~~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li 158 (488)
+.+|++.+..-... +..| |-.-=+..+.+....|.+.+|+.++..+...=+ ..+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99998888766553 2222 112223445667788999999888888766543 47788888877
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCC
Q 036287 159 NMYSRCGDIDKALQVFEEMKE---RDV-TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH--GGL 232 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g~ 232 (488)
-++++. .|-++.+ -|+ .-|.-||..|.+.=+.-++ ---..+-|....+..++....- ...
T Consensus 175 lmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 175 LMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred HHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 777653 3333321 121 2344455555432111111 0001133433333333332211 111
Q ss_pred HHHHHHHHHhcccccCcccCh-hhHHHHHHHHHhcCChHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHhCChhHH
Q 036287 233 VDLGFEIFQSMTRDYGIEPQI-EHYGCIVDLLSRVGRPEEAYDFITNM---KIAP----DHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p----~~~~~~~ll~~~~~~g~~~~a 304 (488)
..--.+++.... ++-+.|+- -+...|++.+.+ +.+++..+.+.+ .+.+ -..++..++..+.+.++..+|
T Consensus 241 l~~~mq~l~~We-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 241 LPPLMQILENWE-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred ccHHHHHHHHHH-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 111222222222 23455552 333445554444 455555555444 1111 256788888899999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 036287 305 EQIAKRLLDCRSADS 319 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~ 319 (488)
.+.+.-+.-++|...
T Consensus 318 ~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 318 KQYLALLKILDPRIS 332 (549)
T ss_pred HHHHHHHHhcCCcch
Confidence 999888888887653
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.36 E-value=1.8 Score=43.43 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE 46 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~ 46 (488)
...+++..+=.|+-+.+.+.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 34556666667888888888776555
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.24 E-value=0.53 Score=42.29 Aligned_cols=97 Identities=11% Similarity=0.086 Sum_probs=70.4
Q ss_pred HHHHhhcC--CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 036287 70 FEVFSRVK--VKDTVCWTAMIDGLVRN-----GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG------------ 130 (488)
Q Consensus 70 ~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------------ 130 (488)
++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44566665 66778888888777654 445555667788888899999999999888764422
Q ss_pred ----chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 131 ----ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 131 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
+-+-+..++++|...|+-||..+-..|++++.+.|-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234567778888888888888888888888777664
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.23 E-value=1.3 Score=35.88 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 262 LLSRVGRPEEAYDFITNM----KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
...+.|++++|.+.|+.+ |..| ....--.|+.++.+.++++.|...+++.+++.|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344567777777777776 2222 2344555777788888888888888888888776543
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.20 E-value=2.6 Score=42.32 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCCHHHHHHHHHhcccccCcccChh
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTK-----VTFVGVLNACSH----GGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+.. ....+.+.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555666788888888888766532 22111 123333333332 45678899999999864 46655
Q ss_pred hHH-HHHHHHHhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH-H
Q 036287 255 HYG-CIVDLLSRVGRPEEAYDFITNMK-IAP-----DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL-S 326 (488)
Q Consensus 255 ~~~-~li~~~~~~g~~~~A~~~~~~m~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~ 326 (488)
.|. .-...+...|++++|++.|++.- .+. ....+--+...+....++++|...+.++.+....+...|.-+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 554 33456777899999999999752 111 233444566667888999999999999999876665565544 4
Q ss_pred HHHhcCCCh-------HHHHHHHHHHHh
Q 036287 327 NAYASSGKW-------KEAVQIRAKMKE 347 (488)
Q Consensus 327 ~~~~~~g~~-------~~a~~~~~~m~~ 347 (488)
-+|...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 455677888 788888877644
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.18 E-value=10 Score=41.31 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 036287 84 WTAMIDGLVRNG--EMARALDLFREMQR 109 (488)
Q Consensus 84 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 109 (488)
.-.+|.+|++.+ ..++|+....+.+.
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 346778888887 67777777777664
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=94.11 E-value=2.5 Score=41.19 Aligned_cols=158 Identities=11% Similarity=0.090 Sum_probs=104.8
Q ss_pred HHH--HHHHHHHHhcC-----ChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHh---------c-cCCHHHHHHHHHhcc
Q 036287 183 TTY--NSLIAGLAMHG-----RSIEAVEMFREMIN-QGIRPTKVTFVGVLNACS---------H-GGLVDLGFEIFQSMT 244 (488)
Q Consensus 183 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~---------~-~g~~~~a~~~~~~~~ 244 (488)
..| ..++.+....- ..+.|+.+|.+... +...|+-..-.+++.-|- . .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666654422 35678889999882 225666433222222211 1 234556666666665
Q ss_pred cccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh-
Q 036287 245 RDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT- 321 (488)
Q Consensus 245 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~- 321 (488)
+ --+-|......+..++.-.|+++.|..+|++. ...|| +.+|......+.-.|+.++|...+++.+++.|....+
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 3 22335666667777778888899999999998 67787 5677777777788999999999999999999876433
Q ss_pred -HHHHHHHHhcCCChHHHHHHHH
Q 036287 322 -YVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 322 -~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
....+++|...+ .++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 334455777664 577777664
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.00 E-value=2.8 Score=34.07 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=17.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhc
Q 036287 157 LINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMH 195 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 195 (488)
++..+...+........++.+... +....|.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 444444445555555555444322 233444555555443
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.98 E-value=0.12 Score=30.18 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
.+|..+...+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777788888888888888888887775
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.95 E-value=0.31 Score=44.37 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
..++..++..+...|+++.+...++++++.+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445667788888889999999999999999999999999999999999999999999998876
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.88 E-value=0.75 Score=36.27 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=60.1
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-CCC---chhHHHHHHHHhcCCCh
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR-SAD---SGTYVLLSNAYASSGKW 335 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 335 (488)
+++..|+++.|++.|.+. .+-| .+..||.=..++.-.|+.++|..-+++++++. |.. ...|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677777777777765 3333 46677777777777788888887777777754 322 12455566677777888
Q ss_pred HHHHHHHHHHHhCCC
Q 036287 336 KEAVQIRAKMKEAGV 350 (488)
Q Consensus 336 ~~a~~~~~~m~~~g~ 350 (488)
+.|..=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888777777766554
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.70 E-value=0.2 Score=29.05 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
..|..+...+...|++++|.+.++++++++|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777777788888888888777777754
No 259
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.69 E-value=10 Score=39.63 Aligned_cols=77 Identities=12% Similarity=0.032 Sum_probs=35.1
Q ss_pred hHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 269 PEEAYDFITNMK-IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 269 ~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
.++|.+.+.... ...+...+..-+......++.+.+...+..|-+.....+....=++.++...|+.++|...|+..
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555431 11122223333333335555555555555543322223334444555555556666666655554
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.47 E-value=0.51 Score=37.14 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=54.7
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHhC
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAP--DHIMLGSLLSACKIHG 299 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~ll~~~~~~g 299 (488)
+.+..|+++.|++.|.+... -.+.....||.-..+|.-.|+.++|++-+++. +-+. --..|..=...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556667777776666652 22334566777777777777777776666654 2110 0122333344567778
Q ss_pred ChhHHHHHHHHHHhcCCC
Q 036287 300 KLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~~p~ 317 (488)
+.+.|..-|+.+.+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888777644
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=2.4 Score=39.21 Aligned_cols=151 Identities=14% Similarity=0.069 Sum_probs=102.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc---CCCCcHhHHHHHHHHHHhcCCHHH
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH---RIDLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~ 169 (488)
.+|+..+|-..++++++. .|.|...+.-.=.+|.-.|+.+.-+..++.++.. ++|...++...+.-+...+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467888888888888876 5678888888888999999998888888888754 233333444444445567899999
Q ss_pred HHHHHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 170 ALQVFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ---GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 170 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
|++.-++..+- |.-+-.+....+-..|+..++.+...+-... +-..-..-|-...-.+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99998887763 4445556677777889999998887664322 10001122333333445568889999888764
Q ss_pred c
Q 036287 244 T 244 (488)
Q Consensus 244 ~ 244 (488)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.20 E-value=2.8 Score=33.97 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=33.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRP---TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
.....+.|++++|.+.|+.+... .+. ....-..++.++...+++++|...++..++-+.-.|
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 33444566666666666666654 111 123344455566666666666666666664433333
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.87 E-value=1.8 Score=34.26 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=44.7
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHS 140 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 140 (488)
..||++......+-.+. .+....+..+....++|.-++-.+++..+.+. -.|++.....+.+||.+.|+..++.+++.
T Consensus 67 s~C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 67 SKCGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp GG-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hhhcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 34444444444443332 23334455566667777777777777666553 25666666777777777777777777777
Q ss_pred HHHHcCC
Q 036287 141 YMGKHRI 147 (488)
Q Consensus 141 ~~~~~g~ 147 (488)
.+-+.|+
T Consensus 145 ~ACekG~ 151 (161)
T PF09205_consen 145 EACEKGL 151 (161)
T ss_dssp HHHHTT-
T ss_pred HHHHhch
Confidence 7766664
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=6.5 Score=34.88 Aligned_cols=195 Identities=10% Similarity=0.010 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC--HHHHHHHHHHHHHcCC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKD--TVCWTAMIDGLVRNGE 96 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~ 96 (488)
|..-..+|....++++|...+.+..+ .++...|.+ ...++.|.-+.+++..-+ +..|+--...|.++|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 44444555556666666665544332 111111111 122344444444443222 2345555666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC-----CCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI-----DLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
++.|-..+++.-+. ....+++.|.+++++....-. .--...+..+...+.+...+++|-
T Consensus 107 pdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 107 PDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred cchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 66665555544321 122334455555554432110 001122333444555555555555
Q ss_pred HHHHhccc--------CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 172 QVFEEMKE--------RDV-TTYNSLIAGLAMHGRSIEAVEMFREMINQG---IRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 172 ~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
..|.+-.. ++. ..+-+.|-.|.-..++..|...++.--+.+ -.-|..+...||.+|- .|+.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 44443221 111 123334444444555666666665533221 1123344445555443 3444444443
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.84 E-value=1.7 Score=40.61 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchHHHH
Q 036287 91 LVRNGEMARALDLFREMQRD--NVRPNEVTIVCVLSACSQLGALELGR 136 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~ 136 (488)
+.+..+.++|+..+.+-+.. +...--.++..+..+.++.|.++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 34556677777766655442 00111123444444555555544443
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.81 E-value=0.47 Score=29.62 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
.+|..+...|.+.|++++|+++|++.++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35667777888888888888888888775
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.79 E-value=10 Score=36.87 Aligned_cols=133 Identities=11% Similarity=0.161 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhH-HHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHY-GCI 259 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 259 (488)
...|-..+++-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+..-|..+|+.-... -||...| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 4567788888888888999999999999988 6788888888888665 47888899999876643 3444443 456
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 260 VDLLSRVGRPEEAYDFITNM--KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
++.+.+.++-+.|..+|+.. .+..+ ..+|..++.--..-|++..+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 67778899999999999965 33333 5789999998899999999999999998888765
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.66 E-value=0.3 Score=28.97 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQ 108 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (488)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887744
No 269
>PRK09687 putative lyase; Provisional
Probab=92.37 E-value=9.2 Score=35.40 Aligned_cols=61 Identities=13% Similarity=-0.099 Sum_probs=26.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
+..+-...+.++++.|+..-.-.+++.+.- ++ .....+.++...|+. +|...+..+.+..|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 444444455555555553222222222221 12 223444555555553 45555555555444
No 270
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=9.1 Score=35.07 Aligned_cols=117 Identities=10% Similarity=0.054 Sum_probs=70.6
Q ss_pred HHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH----HHHHHHHHHHHhcCChh
Q 036287 124 SACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV----TTYNSLIAGLAMHGRSI 199 (488)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 199 (488)
......|++..+...++...... +.+..+.-.++.+|...|+.+.|..++..++.... ....+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34466788888888888887765 23355566788888999999999999988875321 11222333444444444
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 200 EAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 200 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
+...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444333 34 44444455566666777777766554444
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.18 E-value=3.6 Score=40.40 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCC--CchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 289 GSLLSACKIHGKLQLGEQIAKRLLDCRSA--DSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
..|...+.+.|+.++|.+.++++.+..|. +......|++++...+.+.++..++.+-.+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 44556666777777777777777765543 344666777777777777777777776544333
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.98 E-value=3.8 Score=38.15 Aligned_cols=61 Identities=11% Similarity=0.290 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHhcccccCcccChhhHHHHH
Q 036287 199 IEAVEMFREMINQGIRPTKV--TFVGVLNACSHGGL--VDLGFEIFQSMTRDYGIEPQIEHYGCIV 260 (488)
Q Consensus 199 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 260 (488)
+.+...|+.+.+.|...+.. ....++..+..... ..++.++++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 45666777777766654332 33334433333322 34667777777765 7777777766543
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.96 E-value=6 Score=37.17 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=27.3
Q ss_pred HHcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVK------DTVCWTAMIDGLVRNGEMARALDL 103 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 103 (488)
....+.++|+..+.+...+ -..++..+..+..+.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 4556777777777665432 123566677777788877776653
No 274
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.94 E-value=4.1 Score=40.81 Aligned_cols=148 Identities=19% Similarity=0.213 Sum_probs=66.9
Q ss_pred cCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 31 CGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
.|+++.|-.++..++. ...+.++.-+.+.|-.++|+++-- .||. -.....+.|+.+.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k----~~rt~va~Fle~~g~~e~AL~~s~---D~d~-----rFelal~lgrl~iA~~la~e~--- 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK----EIRTKVAHFLESQGMKEQALELST---DPDQ-----RFELALKLGRLDIAFDLAVEA--- 663 (794)
T ss_pred hccccccccccccCch----hhhhhHHhHhhhccchHhhhhcCC---Chhh-----hhhhhhhcCcHHHHHHHHHhh---
Confidence 4666666665555542 223444555555565555555421 1111 011223445555555544332
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHH
Q 036287 111 NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIA 190 (488)
Q Consensus 111 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 190 (488)
-+..-|..|..+....+++..|.+.+...... ..|+-+|...|+-+....+-....+. -..|....
T Consensus 664 ---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~--g~~N~AF~ 729 (794)
T KOG0276|consen 664 ---NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQ--GKNNLAFL 729 (794)
T ss_pred ---cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhh--cccchHHH
Confidence 13444555555555555665555555544432 23444444455444332222222210 01122223
Q ss_pred HHHhcCChhHHHHHHHH
Q 036287 191 GLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~ 207 (488)
+|...|+++++++++.+
T Consensus 730 ~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 44455666666655543
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.93 E-value=1.7 Score=39.73 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMIN-----QGIRPTKVTFVG 222 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 222 (488)
..++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445677888999999999999999888753 667899999999999999999999998875 467776665554
Q ss_pred HHHH
Q 036287 223 VLNA 226 (488)
Q Consensus 223 ll~a 226 (488)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.91 E-value=14 Score=36.51 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=71.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
+..+++.-+++-++.++ +.||-.+.-+++ +--......++++++++.++.|-. . |.+....+..-.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~----lg~s~~~~~~g~ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------S----LGKSQFLQHHGH 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------h----hchhhhhhcccc
Confidence 44455555555555555 345543333332 222345577888888887765510 0 000000000000
Q ss_pred HHHhcccCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 173 VFEEMKERD----VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 173 ~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
..+....++ +..-.-+..+.-+.|+.++|++.|++|.+....- +......|+.++...+.+.++..++.+-.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 111111222 2222335555667788888888888887643211 22344567778888888888888777754
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.75 E-value=13 Score=35.64 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC----CCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS----ADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
...+|..+...+++.|+++.|...+.++.+.++ ..+.....-+......|+..+|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999988652 2456677778889999999999999988877433
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.70 E-value=4.8 Score=37.49 Aligned_cols=126 Identities=12% Similarity=0.227 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----chHHHHHHHHHHHHcCC---CCcHhHHHHHHHHHHhcCCH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQ--LG----ALELGRWIHSYMGKHRI---DLNHIVGGALINMYSRCGDI 167 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~ 167 (488)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+.-. .++...+.+|+.+ ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788999999999888888775544433 22 35678899999988642 3444555555543 33333
Q ss_pred ----HHHHHHHHhccc-----CCH-HHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036287 168 ----DKALQVFEEMKE-----RDV-TTYNSLIAGLAMHGR--SIEAVEMFREMINQGIRPTKVTFVGVL 224 (488)
Q Consensus 168 ----~~A~~~~~~~~~-----~~~-~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 224 (488)
+.++.+|+.+.+ .|. .....++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 445566666554 233 333333333222222 457899999999999988877766443
No 279
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.63 E-value=3.8 Score=36.94 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhcccccCcc-cChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHhCChhHH
Q 036287 231 GLVDLGFEIFQSMTRDYGIE-PQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPD-HIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a 304 (488)
|++..|.+.|....+.|.-. -....+-.|...+...|++++|...|..+ |-.|- +..+-.|.......|+.+.|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 34555555554444332110 01223334555555555555555555544 22222 34555555566666777777
Q ss_pred HHHHHHHHhcCCCCch
Q 036287 305 EQIAKRLLDCRSADSG 320 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~ 320 (488)
...++++.+.-|..+.
T Consensus 235 ~atl~qv~k~YP~t~a 250 (262)
T COG1729 235 CATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHCCCCHH
Confidence 7777777776666543
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.53 E-value=10 Score=34.07 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=45.2
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCCch---hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 290 SLLSACKIHGKLQLGEQIAKRLLDCRSADSG---TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 290 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.+..-|.+.|.+..|..-++++++.-|..+. .+..+..+|...|..++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3456688999999999999999997655443 555678899999999999988665543
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.53 E-value=8.8 Score=33.45 Aligned_cols=183 Identities=20% Similarity=0.183 Sum_probs=94.3
Q ss_pred HHhcCCHHHHHHHHHhcc--cCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 161 YSRCGDIDKALQVFEEMK--ERD-VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
|-..|-+.-|+--|.+.. .|+ +..+|-+.--+...|+++.|.+.|+...+....-+-...+.- -++.-.|+++.|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeeeecCchHhhH
Confidence 333444445554444433 232 456777777778888888888888887774322221112211 2233457777776
Q ss_pred HHHHhcccccCcccChhhHHHHHH-HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVD-LLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
+=|...-.. .|+. .|..|-- .--+.-++.+|..-+.+--...|..-|...|-.+.- |.+. -+.+++++.+...
T Consensus 154 ~d~~~fYQ~---D~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 154 DDLLAFYQD---DPND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHhc---CCCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 655554432 2221 1222211 112334555665433322112344445544443321 1111 1223333333222
Q ss_pred CC-------chhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 317 AD-------SGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 317 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
++ ..+|.-|..-|...|+.++|..+|+.....++
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22 35888999999999999999999998765443
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.52 E-value=3.7 Score=34.33 Aligned_cols=124 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhH-HHHH--HHHHHhcCCH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEV-TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIV-GGAL--INMYSRCGDI 167 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l--i~~y~~~g~~ 167 (488)
++.+..++|+.-|..+.+.|...=++ ....+.....+.|+-..|...|.++-+....|-+.- ..-| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44555566666666665554321111 111122233455555666666665544332222110 0001 1123445666
Q ss_pred HHHHHHHHhcccC-C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 168 DKALQVFEEMKER-D---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 168 ~~A~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
++...-.+.+..+ + ...-.+|.-+-.+.|++.+|.+.|.++......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 6666555554432 1 2334455555566777777777777766543333
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.30 E-value=0.41 Score=28.38 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=20.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+|..|.++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888889999999998888754
No 284
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.05 E-value=12 Score=34.16 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 289 GSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+.....|...|.+.+|.++.++.+.++|-+...+..|++.++..|+--.+.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33446789999999999999999999999999999999999999998888888887753
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.97 E-value=4.3 Score=33.94 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=23.3
Q ss_pred hcCChHHHHHHHHhCCC--CCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 265 RVGRPEEAYDFITNMKI--APD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 265 ~~g~~~~A~~~~~~m~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
..|.++....-.+.+.. .|- ...-.+|.-+-.+.|++..|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44555555555554411 111 12223344444555666666666666554
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.30 E-value=17 Score=34.68 Aligned_cols=147 Identities=6% Similarity=-0.112 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC--hh
Q 036287 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP---TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ--IE 254 (488)
Q Consensus 180 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 254 (488)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888888888888888888888877643211 2223333344455567778887777766641 11111 11
Q ss_pred hHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHh------CChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 255 HYGCIVDLLSRVGRPEEAYDF-ITNMKIAPDHIMLGSLLSACKIH------GKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
....+...+.. ..+..... ........-...+..+..-+... ++.+.+.+.|+.+.+..|....+|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000022233333333333 77888899999999988887777776666
Q ss_pred HH
Q 036287 328 AY 329 (488)
Q Consensus 328 ~~ 329 (488)
.+
T Consensus 301 ~~ 302 (352)
T PF02259_consen 301 FN 302 (352)
T ss_pred HH
Confidence 55
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.01 E-value=0.58 Score=27.05 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
+|..+...+...|++++|...+++.+++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466666777777777777777777777766
No 288
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.90 E-value=6.8 Score=29.41 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036287 57 INCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 120 (488)
++.+...|++++|..+.+.+..||...|-+|... +.|..+++..-+.+|...| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3556778999999999999999999999887654 6677777777777887776 55555554
No 289
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.88 E-value=15 Score=38.54 Aligned_cols=179 Identities=13% Similarity=0.066 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhc
Q 036287 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNH--IVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMH 195 (488)
Q Consensus 118 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 195 (488)
+...-+....+...++.|..+-+ ..+.+++. .+...-.+-+.+.|++++|...|-+-...-.. .-+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 34445555666666666665533 33433332 22333344455778888888777664431111 1245556666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHH
Q 036287 196 GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
.+..+-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.++.+...+ |.- ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 66777778888888887543 33445688899999999888888776552 222 11233456777778888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 276 ITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 276 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
-.+.+. +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777653 333334333 3557888888877755
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.85 E-value=0.87 Score=26.30 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
.+|..+...|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777888888888888888888887763
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.53 E-value=6 Score=33.71 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---H
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKERD------VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFV---G 222 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ 222 (488)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+....-..+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356677888888888888888888877632 2346667777777888888887777765432221111111 1
Q ss_pred HHHH--HhccCCHHHHHHHHHhccc
Q 036287 223 VLNA--CSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 223 ll~a--~~~~g~~~~a~~~~~~~~~ 245 (488)
+..+ +...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 2335666666666665543
No 292
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.42 E-value=2.4 Score=36.27 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-C-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-D-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
-+.+.|++++|..-|... ..-| . .+.|..=..++.+.+..+.|+.-..+.++++|....+...-..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777766665 2112 1 34455555677888999999999999999999887787777889999999
Q ss_pred hHHHHHHHHHHHhCC
Q 036287 335 WKEAVQIRAKMKEAG 349 (488)
Q Consensus 335 ~~~a~~~~~~m~~~g 349 (488)
+++|++=|+++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887753
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.26 E-value=18 Score=33.43 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=12.7
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 036287 92 VRNGEMARALDLFREMQR 109 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~ 109 (488)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356777777777777655
No 294
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.80 E-value=26 Score=34.65 Aligned_cols=278 Identities=9% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Q 036287 35 KDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVK--DTVCWTAMIDGLVRNGEMARALDLFREM----- 107 (488)
Q Consensus 35 ~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 107 (488)
+.|.+.++-..+.+ .......-.++.---+.+....+|+....+ ....|+..|..+...-....-..+...|
T Consensus 268 ~laqr~l~i~~~td-l~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~ 346 (568)
T KOG2396|consen 268 DLAQRELEILSQTD-LQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRK 346 (568)
T ss_pred HHHHHHHHHHHHhh-ccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh--------ccc
Q 036287 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE--------MKE 179 (488)
Q Consensus 108 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~--------~~~ 179 (488)
...+......-+........-......+...-..+...++..+...|..-+........ ++.-+|.+ +..
T Consensus 347 ~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s 424 (568)
T KOG2396|consen 347 AHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCS 424 (568)
T ss_pred HHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcc
Q ss_pred CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHH
Q 036287 180 RDVTTYNSLI-AGLAMHGRSIEAVEMFREMINQGIRPTKVTFV-GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYG 257 (488)
Q Consensus 180 ~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 257 (488)
+-..+|++.. ..+.+....+..+..+..+ ..|+..|+. .++.-+-+.|-..+|..++..+.. --+|+...|.
T Consensus 425 ~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~----~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r 498 (568)
T KOG2396|consen 425 ELLISWASASEGDSLQEDTLDLIISALLSV----IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFR 498 (568)
T ss_pred hhHHHHHHHhhccchhHHHHHHHHHHHHHh----cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHH
Q ss_pred HHHHH---HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh-cCCCCchhH
Q 036287 258 CIVDL---LSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD-CRSADSGTY 322 (488)
Q Consensus 258 ~li~~---~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~ 322 (488)
.+|.. ...+| +..+..+++.| .+..|+..|...+.--..+|..+.+-.++.++.+ ++|....++
T Consensus 499 ~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~~af 568 (568)
T KOG2396|consen 499 KMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESAEAF 568 (568)
T ss_pred HHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhhhhcC
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.73 E-value=6.9 Score=33.35 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN--EVTIVCVLSACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 144 (488)
..+..+...|.+.|+.++|++.|.++......|. ...+..+++.+...+++..+......+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3677788888888888888888888877544443 24556677777777777777776665543
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.21 E-value=8.4 Score=38.77 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
.-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHH
Confidence 344555555555555555555554432 233344444444444433333333
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.02 E-value=14 Score=30.63 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=38.1
Q ss_pred hccCCHHHHHHHHHhcccccCcccCh-hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHh
Q 036287 228 SHGGLVDLGFEIFQSMTRDYGIEPQI-EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIH 298 (488)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 298 (488)
...++.+.+..++..+. -+.|.. ..-..-...+.+.|++.+|.++|+++ .-.|....-.+|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34566777777776665 344542 22223344466777888888888777 2233344444555555443
No 298
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.96 E-value=19 Score=31.94 Aligned_cols=56 Identities=9% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHHhcCChHHHHHHHHhC---CCCCCHHHHHH---HHH--HHH-HhCChhHHHHHHHHHHhcCCC
Q 036287 262 LLSRVGRPEEAYDFITNM---KIAPDHIMLGS---LLS--ACK-IHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~--~~~-~~g~~~~a~~~~~~~~~~~p~ 317 (488)
.-+..+++.+|+++|++. .+..+..-|.. ++. .|- -..+.-.+...+++..+.+|.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 344667888899998877 23323333321 121 122 225666677788888888875
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.47 E-value=50 Score=36.40 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
++.--+.|.+++|..++.-=.+.-...|.+...-+...+.+++|.-.|+..-+ .-..+.+|...|++.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334455555555554332222233444444444555666666666554322 112455666667777777
Q ss_pred HHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
.+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 77666542 11111223355666666677777776666665
No 300
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.30 E-value=36 Score=34.49 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=112.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 150 NHIVGGALINMYSRCGDIDKALQVFEEMKERDV---TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
+..+|..-++--.+.|+.+.+.-.|++..-|-. ..|--.+.-....|+.+-|-.++....+--++-...+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345556666666667777777777766554311 23444444444447777676666655553333222222112223
Q ss_pred HhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 036287 227 CSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAY---DFITNM-KIAPDHIMLGSLLS-----ACK 296 (488)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----~~~ 296 (488)
+-..|+.+.|..+++.+.++ . |+ +..-..-+....+.|..+.+. +++... +.+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 45678999999999999874 3 55 333344466677888888887 555544 22223333333322 234
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
..++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56889999999999999999999999999888776653
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.00 E-value=1.1 Score=26.23 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=13.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 148 DLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
|.+..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555553
No 302
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.80 E-value=35 Score=33.92 Aligned_cols=91 Identities=8% Similarity=0.009 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 228 (488)
.....++++.+...-...-.+.+-.+|.. .+-..+..++..|..+ ..++-..+|+++.+. .-|.+.+..-+.-+.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~y 142 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKY 142 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHH
Confidence 33344455555544444444444444443 3344455555555555 344445555555542 223333333332222
Q ss_pred ccCCHHHHHHHHHhcc
Q 036287 229 HGGLVDLGFEIFQSMT 244 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~ 244 (488)
..++.+.+..+|.++.
T Consensus 143 Ekik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EKIKKSKAAEFFGKAL 158 (711)
T ss_pred HHhchhhHHHHHHHHH
Confidence 3345555555555444
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.67 E-value=1.8 Score=24.74 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
..|..+...|.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777788888888888888877663
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.59 E-value=36 Score=33.84 Aligned_cols=159 Identities=12% Similarity=0.130 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
|-...-+++..+.++-.+.-...+..+|+.-| .+...|..++..|... ..+.-..+++++++..+. |+....-|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44556677888888888888888888888754 5677788888888777 566677788888777654 4555566777
Q ss_pred HHHhcCCHHHHHHHHHhcccC------CH---HHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc
Q 036287 160 MYSRCGDIDKALQVFEEMKER------DV---TTYNSLIAGLAMHGRSIEAVEMFREMIN-QGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~ 229 (488)
.|-+ ++.+.+...|.++..+ +. ..|..++..- ..+.+..+.+..+... .|...-.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7766 7777777777765532 11 2455554321 2345555555555553 2333334445555566677
Q ss_pred cCCHHHHHHHHHhccc
Q 036287 230 GGLVDLGFEIFQSMTR 245 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~ 245 (488)
..++++|.+++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777776664
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.59 E-value=4.6 Score=32.90 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=35.5
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.++.+.++.++..+.-+.|..+..-..-...+...|+|++|.++++++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666777777777776777666666666666677777777777777766544
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.41 E-value=1.9 Score=26.02 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877654
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.34 E-value=19 Score=30.28 Aligned_cols=132 Identities=13% Similarity=0.160 Sum_probs=85.5
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHc-CCHHHHHHHHhhcCCCCHHHH
Q 036287 6 HGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEH-GLVENAFEVFSRVKVKDTVCW 84 (488)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~~~~~~~~~~ 84 (488)
...+.+.|+.|+..++..+++.+.+.|++..-..++..-.-+|+...--.|++.-.+. .-..-|.+.+.++. ..+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~ 92 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAY 92 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhH
Confidence 3445567999999999999999999999999888876544444222222222221111 11344555555553 356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 145 (488)
..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++....+.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67778899999999999998775332 1222345677777777777666666666554
No 308
>PRK09687 putative lyase; Provisional
Probab=85.75 E-value=30 Score=32.06 Aligned_cols=239 Identities=10% Similarity=0.027 Sum_probs=149.3
Q ss_pred CCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHHHH
Q 036287 44 MPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEM----ARALDLFREMQRDNVRPNEVTI 119 (488)
Q Consensus 44 m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~ 119 (488)
+...+ ..+....+.++.+.|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .|+...-
T Consensus 32 L~d~d-~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 32 LDDHN-SLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred HhCCC-HHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 33344 666666777777777654444444444566777767777778888764 4677777777443 4666666
Q ss_pred HHHHHHHHhcCchHH--HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcC-
Q 036287 120 VCVLSACSQLGALEL--GRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHG- 196 (488)
Q Consensus 120 ~~ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g- 196 (488)
...+.++...+.... .......+...-..++..+-...+.++.+.|+.+....+..-+.++|...-...+.++.+.+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 677777666542111 11222223222224466777777888888887554444555555677666666666666653
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFI 276 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 276 (488)
+..++...+..+.. .+|...-...+.++.+.|+. .+...+-...+. ++ .....+.+++..|.. +|...+
T Consensus 189 ~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 189 DNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred CCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHH
Confidence 24567777777764 45777777788888888885 455444444432 22 234678889999985 677777
Q ss_pred HhC-CCCCCHHHHHHHHHHHH
Q 036287 277 TNM-KIAPDHIMLGSLLSACK 296 (488)
Q Consensus 277 ~~m-~~~p~~~~~~~ll~~~~ 296 (488)
..+ .-.||..+-...+.+|.
T Consensus 258 ~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 258 DTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhhCCChhHHHHHHHHHh
Confidence 776 44668777777666664
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.62 E-value=53 Score=34.81 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=77.1
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVKVKDTV---CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS 127 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 127 (488)
.....-+..+.+...++.|..+-+.-..+... ....-.+-+.+.|++++|...|-+-... +.|. .++.-+.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 34556677778888888888887664422111 2233344566788888888888776543 2332 2344445
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
+......-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.+..+...
T Consensus 409 daq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred CHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555666666777778887653 3334568888888888887777766554
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.38 E-value=0.88 Score=37.19 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC
Q 036287 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK 77 (488)
Q Consensus 5 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 77 (488)
..+.++..+-..+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|.-++.++.
T Consensus 29 yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~----yd~~~~~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 29 YLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN----YDLDKALRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp CHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS----S-CTHHHHHHHTTTSHHHHHHHHHCCT
T ss_pred HHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc----cCHHHHHHHHHhcchHHHHHHHHHHcc
Confidence 455666666667788899999999999888888888773332 233455555556666666665555543
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.37 E-value=17 Score=33.69 Aligned_cols=91 Identities=5% Similarity=0.094 Sum_probs=49.0
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcCC-C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVKV-K--------DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 121 (488)
.+-..++..-....+++++...+-++.. | ...+|--++. .-++++++.++..=.+-|+-||.+++..
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhHHH
Confidence 3334444444445566666665555441 1 1222222222 2245566666666666666666666666
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHc
Q 036287 122 VLSACSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 122 ll~~~~~~~~~~~a~~~~~~~~~~ 145 (488)
++..+.+.++...|.++.-.|+..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666665555444
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.21 E-value=4 Score=30.37 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.+..+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 44466666777777778888888888888888888888888888877643 2223445555543
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.20 E-value=14 Score=31.70 Aligned_cols=128 Identities=7% Similarity=-0.057 Sum_probs=71.1
Q ss_pred chhhHHHHHHHHHh-cCChHHHHHHHhhCCCCCceeeHH--HHHHHHHHcCCHHHHHHHHhhcC-CCCHH-----HHHHH
Q 036287 17 NRSTRLKLVELYGK-CGEFKDAMQLFDEMPECNDVVAST--VMINCYVEHGLVENAFEVFSRVK-VKDTV-----CWTAM 87 (488)
Q Consensus 17 ~~~~~~~li~~y~~-~g~~~~A~~~~~~m~~~~~~~~~~--~li~~~~~~g~~~~A~~~f~~~~-~~~~~-----~~~~l 87 (488)
-...|..++..... .-+...+..-|..-..++.-.++. .+...+..+|++++|..-++... .+.-. +--.|
T Consensus 53 AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 53 ASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34456666665532 112222222233333223222333 33566777888888887777544 22212 22335
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC
Q 036287 88 IDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR 146 (488)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 146 (488)
.+...+.|.+++|+.+++.....+. .......-..++...|+-++|+.-|...++.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5667778888888888776544331 12223334566778888888888888887775
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.02 E-value=29 Score=31.37 Aligned_cols=238 Identities=16% Similarity=0.235 Sum_probs=135.1
Q ss_pred CHHHHHHHHhhcC----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHhcCch
Q 036287 65 LVENAFEVFSRVK----VKD---TVCWTAMIDGLVRNGEMARALDLFREMQR---DNV--RPNEVTIVCVLSACSQLGAL 132 (488)
Q Consensus 65 ~~~~A~~~f~~~~----~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~~~~~~~~~ 132 (488)
++++|+.-|++.. ++. -.+.-.+|..+.+.|++++.+..|.+|+. ..+ .-+..+.++++.-.+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 4555555555443 111 22344567777888888888887777743 111 12455667777766666666
Q ss_pred HHHHHHHHHHHHc----C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------C-------HHHHHHHHHHH
Q 036287 133 ELGRWIHSYMGKH----R-IDLNHIVGGALINMYSRCGDIDKALQVFEEMKER--------D-------VTTYNSLIAGL 192 (488)
Q Consensus 133 ~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~~~ 192 (488)
+.-..+++.-.+. . -..--.+-..|...|...|.+.+-.++++++.+. | ...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 6666655543221 1 0011122345778888888888888888877631 1 24577778888
Q ss_pred HhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHhcccccCcc--cC---hhhHHHHHH
Q 036287 193 AMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLNACS-----HGGLVDLGFEIFQSMTRDYGIE--PQ---IEHYGCIVD 261 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~--p~---~~~~~~li~ 261 (488)
....+-..-..+|++...-. .-|.+ ....++.-|. +.|.+++|-.=|-..-+.+.-. |. ---|-.|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888888888888776532 23433 3445566664 4578887765444443333322 22 223556667
Q ss_pred HHHhcCChHHHHHHHHh--C-CC--CCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 262 LLSRVGRPEEAYDFITN--M-KI--APDHIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~--m-~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
++.+.|-- -|+. . |. .|.....+.|+.+|.. ++..+-+++++
T Consensus 281 MLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 281 MLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 77666521 1111 1 33 3446667788888854 34444444443
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.95 E-value=0.73 Score=37.66 Aligned_cols=49 Identities=8% Similarity=0.140 Sum_probs=19.9
Q ss_pred HHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFR 206 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~ 206 (488)
++.+.+.+.++....+++.+.. .+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3334444444444444443331 223344444444444444444444443
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.87 E-value=7.8 Score=35.71 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-C--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036287 146 RIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE-R--------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT 216 (488)
Q Consensus 146 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 216 (488)
|.+....+...++..-....+++++...+-++.. + ...+|--++. .=++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4444555556666666667788888877766653 2 2233333332 3467788888888888899999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 217 KVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 217 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
.++++.+++.+.+.++...|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999998888887766654
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.68 E-value=10 Score=32.78 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc---CCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH---RIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
++|++.|-++...+.--++.....+.. |....+.+++++++-.+.+. +-.+|+.++.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555443333333323322 22344555555555544432 1234455555555555555555554
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=84.54 E-value=43 Score=32.85 Aligned_cols=323 Identities=12% Similarity=0.089 Sum_probs=166.0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC----C---ceeeHHHHHHHHHHcCCHHH--------HHHHHh-----
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC----N---DVVASTVMINCYVEHGLVEN--------AFEVFS----- 74 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~---~~~~~~~li~~~~~~g~~~~--------A~~~f~----- 74 (488)
-+|...-+..+..+.+.|++.+++.+++++..+ . +..+|+.++-.+++.=-++- +-+.++
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 456677788889999999999999988887552 1 57778776555543321111 111111
Q ss_pred --hcCCCCHH---------HHHHHH-HHHHHc--CCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCchHHHHHHH
Q 036287 75 --RVKVKDTV---------CWTAMI-DGLVRN--GEMARALDLFREMQRDNVRPNEVT-IVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 75 --~~~~~~~~---------~~~~li-~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~ 139 (488)
+|...|.. ..+.+| ....-- .+..--.++++.....-+.|+... ...+...+.. +.+++..+-
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 11111111 111111 111100 011111222222233334555332 2233333332 555555554
Q ss_pred HHHHHcCCC----CcHhHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCHHH-------HHHHHHHHH----hcCChhHHH
Q 036287 140 SYMGKHRID----LNHIVGGALINMYSRCGDIDKALQVFEEMK--ERDVTT-------YNSLIAGLA----MHGRSIEAV 202 (488)
Q Consensus 140 ~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~-------~~~li~~~~----~~g~~~~A~ 202 (488)
+.+....+. .-...+..++....+.++...|.+.+.-+. +|+... -..+-+..+ ..-+..+-+
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL 362 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYL 362 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHH
Confidence 444333211 123456667777778888888877766554 232211 011111111 122334445
Q ss_pred HHHHHHHHcCCCCCHHH-HHHHHH---HHhccCC-HHHHHHHHHhcccccCccc-ChhhHHH----HHHHHHhc---CCh
Q 036287 203 EMFREMINQGIRPTKVT-FVGVLN---ACSHGGL-VDLGFEIFQSMTRDYGIEP-QIEHYGC----IVDLLSRV---GRP 269 (488)
Q Consensus 203 ~l~~~m~~~g~~p~~~t-~~~ll~---a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~----li~~~~~~---g~~ 269 (488)
.+|+......+ |..- ...++. -+-+.|. -++|..+++.+.+ +.| |...-|. +=..|.++ ..+
T Consensus 363 ~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 363 NLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 56666555432 2211 112222 1333344 7888888887763 222 2222222 22233322 112
Q ss_pred H---HHHHHHHhCCCCCC----HHHHHHHHHH--HHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 270 E---EAYDFITNMKIAPD----HIMLGSLLSA--CKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 270 ~---~A~~~~~~m~~~p~----~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
. +-..++++.++.|- ...-|-|..| +..+|++.++.-.-.-+.+..| ++.+|..++-+.....++++|..
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 2 23445555566663 3444555444 4678999999988888888888 88999999999999999999999
Q ss_pred HHHHH
Q 036287 341 IRAKM 345 (488)
Q Consensus 341 ~~~~m 345 (488)
++..+
T Consensus 517 ~l~~L 521 (549)
T PF07079_consen 517 YLQKL 521 (549)
T ss_pred HHHhC
Confidence 98764
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.18 E-value=4.2 Score=30.62 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 200 EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 200 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5555666666667788888888888888888888888888888875433 33336665554
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.06 E-value=11 Score=31.97 Aligned_cols=44 Identities=9% Similarity=0.177 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
+++|...|+++.+.+|.| ..|..-+.+. ++|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 577888888888899988 5777766665 4577888888777654
No 321
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.88 E-value=52 Score=33.35 Aligned_cols=178 Identities=12% Similarity=0.115 Sum_probs=95.8
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKD---TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA 125 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 125 (488)
+..+|..-+.--.+.|+.+.+.-+|++...|- ...|--.+.-....|+.+-|-.++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45677777777777888888888887776442 234555555444557777777666665554333233332222233
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH---HHHHhccc--CCHHHHHHHHHH-----HHhc
Q 036287 126 CSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL---QVFEEMKE--RDVTTYNSLIAG-----LAMH 195 (488)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~~-----~~~~ 195 (488)
+-..|++..|..+++.+...- +.-+.+-..-+.+-.+.|+.+.+. .++....+ .+....+.+..- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 345567777777777776654 222333333455566667776666 22222221 122222222221 2224
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 036287 196 GRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 228 (488)
++.+.|..++.++.+. ++++...|..++..+.
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 5666666666666654 4555555555555433
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.81 E-value=2.9 Score=25.21 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776654
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.80 E-value=1.6 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=17.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHH
Q 036287 320 GTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 320 ~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.+...+..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667778888888888877765
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.36 E-value=10 Score=28.36 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 036287 99 RALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMG 143 (488)
Q Consensus 99 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 143 (488)
++.+-++.+...++.|++....+.++||-+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455556666667788888888888888888888888888888776
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.17 E-value=33 Score=30.47 Aligned_cols=22 Identities=5% Similarity=-0.064 Sum_probs=16.6
Q ss_pred HHhCChhHHHHHHHHHHhcCCC
Q 036287 296 KIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
...+++.+|+++|+++....-+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 5567889999999998775433
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.78 E-value=2.8 Score=38.93 Aligned_cols=93 Identities=8% Similarity=-0.038 Sum_probs=67.7
Q ss_pred HHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCh
Q 036287 225 NACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKL 301 (488)
Q Consensus 225 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 301 (488)
+-|.+.|.+++|...|.... .+.| ++.++..-..+|.+..++..|+.-.... .+.. =...|..=+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45888999999999998877 4456 7888888889999999998887655543 1110 023344444444556788
Q ss_pred hHHHHHHHHHHhcCCCCch
Q 036287 302 QLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 302 ~~a~~~~~~~~~~~p~~~~ 320 (488)
++|.+-++..+++.|.+..
T Consensus 182 ~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhHHHHHhhCcccHH
Confidence 9999999999999998643
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.71 E-value=6.8 Score=38.21 Aligned_cols=121 Identities=20% Similarity=0.212 Sum_probs=82.5
Q ss_pred HhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH
Q 036287 193 AMHGRSIEAV-EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271 (488)
Q Consensus 193 ~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 271 (488)
...|+...|- ++|..+....-.|+.+-..+. ...+.|+++.+.+.+..... -+.....+..+++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456666555 455555554445555544333 35788999999998887763 445567788889999999999999
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 272 AYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 272 A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
|..+-..| .++ +..+...........|-++++...++++..++|+.
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99988877 222 33344434444556677889999999988877553
No 328
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.65 E-value=15 Score=33.64 Aligned_cols=113 Identities=10% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHH
Q 036287 198 SIEAVEMFREMIN-QGIRPTKVTFVGVLNACSH--GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYD 274 (488)
Q Consensus 198 ~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 274 (488)
..+|+++|+.... ..+--|..+...++..... ......-.++.+.+...++-.++..+....+..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHHhCChhHHHHHHHH
Q 036287 275 FITNM----KIAPDHIMLGSLLSACKIHGKLQLGEQIAKR 310 (488)
Q Consensus 275 ~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 310 (488)
+.+.. ....|...|..+|......|+.....++...
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 329
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.40 E-value=9 Score=28.89 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=32.1
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 278 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
.+.+-|++.+..+.|.+|++.+++..|.++++-+...-.+....|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3467788888889999999999999999998888764333333555544
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.34 E-value=26 Score=28.68 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=10.2
Q ss_pred HHhcCCHHHHHHHHHhccc
Q 036287 161 YSRCGDIDKALQVFEEMKE 179 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~ 179 (488)
+...|++++|..+|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 4445555555555555554
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.20 E-value=3.1 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.098 Sum_probs=14.7
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
+..++...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555566666666655555543
No 332
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.06 E-value=15 Score=31.59 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=45.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 89 DGLVRNGEMARALDLFREMQRDNVRPNEV-----TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
.-+.++|++++|..-|.+.+.. +++... .|..-..+..+++.++.|..--...++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 4466778888888888777765 233222 2222333445566666666655555554411 11111222344555
Q ss_pred cCCHHHHHHHHHhccc
Q 036287 164 CGDIDKALQVFEEMKE 179 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~ 179 (488)
...+++|+.-|.++.+
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5555555555555444
No 333
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.49 E-value=32 Score=28.57 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=8.2
Q ss_pred HHhcCCHHHHHHHHHhcc
Q 036287 161 YSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~ 178 (488)
+...|++++|..+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444444444444443
No 334
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.16 E-value=38 Score=29.17 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCchHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 99 RALDLFREMQRDNVRPNEVTIV--CVLSACSQLGALELGRWIHSYMGKHRIDLN--HIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 99 ~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
+......++....-...-.++. .+...+...++++.|...++.....-.+.+ ..+--.|.......|.+|+|.+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555555542111111222 234456777888888888877765422211 122233556677788888888888
Q ss_pred HhcccCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036287 175 EEMKERDVTT--YNSLIAGLAMHGRSIEAVEMFREMINQG 212 (488)
Q Consensus 175 ~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 212 (488)
+....++-.+ ...-.+.+...|+-++|..-|.+.++.+
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8877765444 3334456888888888888888888764
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.08 E-value=3.7 Score=22.26 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555554443
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.87 E-value=3.3 Score=22.31 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChHHHHHHHh
Q 036287 22 LKLVELYGKCGEFKDAMQLFD 42 (488)
Q Consensus 22 ~~li~~y~~~g~~~~A~~~~~ 42 (488)
..|...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445556666666666666554
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.34 E-value=8.4 Score=33.60 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 257 GCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
+.-+..+.+.+.+.+|+...+.- +.+| |...-..++..++..|++++|..-++-.-++.|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34455566667777777666544 4445 34555566677777777777777777666666554
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.08 E-value=83 Score=32.49 Aligned_cols=180 Identities=12% Similarity=0.113 Sum_probs=103.5
Q ss_pred HHHHHHHHHhcccC-CHHHHHHHHHH-----HHhcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhccC--
Q 036287 167 IDKALQVFEEMKER-DVTTYNSLIAG-----LAMHGRSIEAVEMFREMIN-------QGIRPTKVTFVGVLNACSHGG-- 231 (488)
Q Consensus 167 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-- 231 (488)
...|.+.++...+. ++..-..+... +....+.+.|+..|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766543 34333333332 3455678888888888766 44 2224445556665533
Q ss_pred ---CHHHHHHHHHhcccccCcccChhhHHHHHHHHHh-cCChHHHHHHHHhCCC--CCCHHHHHHHHHHHH--HhCChhH
Q 036287 232 ---LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR-VGRPEEAYDFITNMKI--APDHIMLGSLLSACK--IHGKLQL 303 (488)
Q Consensus 232 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~--~~g~~~~ 303 (488)
+.+.|..++....+. | .|+....-..+...+. -.+...|.++|..... .++...+.++..... ...+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 566788888777642 2 3443333222222222 2456788888887722 222333333322222 3357889
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCcc
Q 036287 304 GEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 304 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
|...++++.+.+++....-......+.. ++++.+.-.+..+.+.|...
T Consensus 383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 9999999998884442222333444444 88888888888888877653
No 339
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.99 E-value=14 Score=24.12 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 322 YVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
...+.-++.+.|++++|.+..+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45677889999999999999999876
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.99 E-value=13 Score=32.02 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHhCChhHH
Q 036287 284 DHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a 304 (488)
|+..+.+|.+.+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444433
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.61 E-value=6.2 Score=22.50 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567777788888888888888877765
No 342
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.49 E-value=46 Score=29.22 Aligned_cols=158 Identities=11% Similarity=-0.000 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC-CCCcHhHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR-IDLNHIVGGALIN 159 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~ 159 (488)
...||-|.--+...|+++.|.+.|+...+.+.. ...+...-.-++.-.|++..|.+-+...-+.+ -+|-...|--|+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 456777777777888888888888877765422 22333222223334567777766555554443 2333444433332
Q ss_pred HHHhcCCHHHHHH-HHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHhccC
Q 036287 160 MYSRCGDIDKALQ-VFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-------KVTFVGVLNACSHGG 231 (488)
Q Consensus 160 ~y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~g 231 (488)
..-+..+|.. +.++....|..-|..-|-.|.- |+.. ...+|+++... -..+ ..||--+..-+...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2234455543 3444555566666655555432 2221 12234443332 1111 247777888888888
Q ss_pred CHHHHHHHHHhccc
Q 036287 232 LVDLGFEIFQSMTR 245 (488)
Q Consensus 232 ~~~~a~~~~~~~~~ 245 (488)
+.++|..+|+-...
T Consensus 252 ~~~~A~~LfKLaia 265 (297)
T COG4785 252 DLDEATALFKLAVA 265 (297)
T ss_pred cHHHHHHHHHHHHH
Confidence 88888888887764
No 343
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=76.88 E-value=44 Score=28.10 Aligned_cols=99 Identities=13% Similarity=0.224 Sum_probs=48.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhc-CCHHHHHHHHHhccc
Q 036287 102 DLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI-DLNHIVGGALINMYSRC-GDIDKALQVFEEMKE 179 (488)
Q Consensus 102 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~~ 179 (488)
+..+.+.+.+++|+...+..++..+.+.|.+..-.++. +.++ +++..+...|++.-.+. .-..-|...+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 33444455666777777777777777776655443332 2222 23333333333322110 00222233333322
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036287 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREM 208 (488)
Q Consensus 180 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m 208 (488)
..+..++..+...|++-+|+++.++.
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 23444555666677777777776664
No 344
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.63 E-value=27 Score=28.07 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHh---CChhHHHHHHHHHHhcC-CCCch-hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 284 DHIMLGSLLSACKIH---GKLQLGEQIAKRLLDCR-SADSG-TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~-p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+..+--.+..++... .+..+++.+++.+.+.. |.... ....|.-++.+.++++.++++.+.+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333333444444443 34567777888887632 33322 333556677888888888888887765
No 345
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.50 E-value=6.8 Score=36.48 Aligned_cols=55 Identities=13% Similarity=0.040 Sum_probs=42.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHc
Q 036287 89 DGLVRNGEMARALDLFREMQRDNVRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 145 (488)
+-|.++|.+++|+..|.+-... .| |.+++..-..+|.+...+..|+.-...++..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 4578899999999999887664 45 8888888888998888888777665555443
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.07 E-value=1.1e+02 Score=32.16 Aligned_cols=48 Identities=19% Similarity=0.083 Sum_probs=34.7
Q ss_pred HHhCChhHHHHHHHHHHhcC---CC------CchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 296 KIHGKLQLGEQIAKRLLDCR---SA------DSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
...+++..|....+.+.+.. |+ .+..+...+-.+-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 55688989999999887742 22 23344455555667899999999997
No 347
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.05 E-value=16 Score=26.69 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=24.0
Q ss_pred hcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHH
Q 036287 30 KCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAF 70 (488)
Q Consensus 30 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~ 70 (488)
..|+.+.|+++++.++ ++ +..+..+++++...|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg-~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QK-EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC-CcHHHHHHHHHHHcCchhhhh
Confidence 4466666666666666 55 666666666666666544443
No 348
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.49 E-value=13 Score=38.74 Aligned_cols=19 Identities=21% Similarity=0.655 Sum_probs=15.1
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 036287 23 KLVELYGKCGEFKDAMQLF 41 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~ 41 (488)
++|--+.|||++++|.++.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~ 134 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVA 134 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 4667778999999999998
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.19 E-value=20 Score=35.20 Aligned_cols=125 Identities=13% Similarity=0.118 Sum_probs=83.9
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQ 306 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 306 (488)
..|++-.|-+-+....+.+.-.|+ +.......+...|+++.+.+.+... -+.....+...++....+.|+.+.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 346666665544444433333444 3333444567789999999998877 233456778888899999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCCc
Q 036287 307 IAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPG 355 (488)
Q Consensus 307 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 355 (488)
..+.|+.-+-.++.........--..|-++++...++++..-+-+.+.|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 9999988665555544444444455677899999998886644443333
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.84 E-value=89 Score=30.68 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=76.1
Q ss_pred HHHHHHHHhCCCCchhh--HHHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 036287 4 EIHGQVLKLGLRSNRST--RLKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKVK 79 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 79 (488)
++...+++.|..|+... ..+.+...++.|+.+-+.-+++.-..++ +...+ +-+...++.|+.+.+..+++.-...
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 35566677777665433 3455556666777766655555432221 11122 2344455677777777666643311
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh-
Q 036287 80 D----TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVT--IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI- 152 (488)
Q Consensus 80 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~- 152 (488)
+ ..-+ +.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.|..++..
T Consensus 95 ~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d 165 (413)
T PHA02875 95 DDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIED 165 (413)
T ss_pred cccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCC
Confidence 1 0111 2222233445443 3344445555443221 112334444556655444333 333322211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHhccc
Q 036287 153 -VGGALINMYSRCGDIDKALQVFEEMKE 179 (488)
Q Consensus 153 -~~~~li~~y~~~g~~~~A~~~~~~~~~ 179 (488)
...+.+...+..|+.+-+..+++.-..
T Consensus 166 ~~g~TpL~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 166 CCGCTPLIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 112233344555666666555554433
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.53 E-value=5.5 Score=24.90 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 323 VLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 323 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
..|..+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999887543
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.37 E-value=35 Score=25.77 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036287 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQ 211 (488)
Q Consensus 132 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 211 (488)
-++|.-|-+.+...+-. ...+.-.-+......|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666655554421 22222233455677899999999999888899999987755 3567777777777777776
Q ss_pred CCCCCHHHHH
Q 036287 212 GIRPTKVTFV 221 (488)
Q Consensus 212 g~~p~~~t~~ 221 (488)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 45555554
No 353
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.31 E-value=6.7 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=24.9
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 290 SLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 290 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
.+.-++.+.|+++.|.+..+.+++.+|.|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556788999999999999999999998853
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.11 E-value=3.9 Score=23.04 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998764
No 355
>PRK10941 hypothetical protein; Provisional
Probab=73.17 E-value=20 Score=32.83 Aligned_cols=62 Identities=18% Similarity=0.084 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
..+.+-.++.+.++++.|.++.+.++.+.|+++.-+.--+-.|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34566678899999999999999999999999988888888999999999999988877653
No 356
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=72.89 E-value=40 Score=33.92 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC--CH---HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKER--DV---TTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
..|+.-|.+++++++|..++..|.=. .. .+.+.+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35777899999999999999888621 12 2333344444444444444444554443
No 357
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.14 E-value=1.6e+02 Score=32.52 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=22.0
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Q 036287 251 PQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 300 (488)
++..+-...+.++++.|..+.+...+..+-..++..+-...+.++...+.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 34445555555555555544332222222122344444444445544443
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.00 E-value=9.4 Score=23.85 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=12.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQ 211 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~ 211 (488)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 359
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.90 E-value=1e+02 Score=29.72 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=50.6
Q ss_pred CHHHHHHH---HHHHHHhCChhHHHHHHHHHHhcCCC-CchhHHHHHHHHh-cCCChHHHHHHHHHHHh
Q 036287 284 DHIMLGSL---LSACKIHGKLQLGEQIAKRLLDCRSA-DSGTYVLLSNAYA-SSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 284 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 347 (488)
|...|.++ +..+.+.|-+..|.++.+-+..++|. |+..-...|+.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44555544 45678889999999999999999998 8877778888885 67888888888887654
No 360
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.49 E-value=42 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888889999999999988876
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.98 E-value=79 Score=28.99 Aligned_cols=86 Identities=12% Similarity=0.081 Sum_probs=44.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-
Q 036287 87 MIDGLVRNGEMARALDLFREMQR--DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR- 163 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~- 163 (488)
=|++++..++|.+++...-+--+ +.++|.. ...-|-.|++.+.+..+.++-..-.+..-.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 36677778888887765544433 2233333 333344466667666666555544433222223335555555543
Q ss_pred ----cCCHHHHHHHH
Q 036287 164 ----CGDIDKALQVF 174 (488)
Q Consensus 164 ----~g~~~~A~~~~ 174 (488)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666666554
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.90 E-value=97 Score=28.61 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHcCCCC----------------cHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 112 VRPNEVTIVCVLSACSQLG-ALELGRWIHSYMGKHRIDL----------------NHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 112 ~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~----------------~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
++-|..-|-+.+....+.. .++++.++.......-++. -..+.+.....|..+|.+.+|.++-
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4455666665555443332 3555555554442211111 1123344567889999999999998
Q ss_pred HhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 175 EEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 175 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
++...- +...|-.++..++..|+--.|.+-++++.+
T Consensus 303 qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 303 QRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 887753 556788899999999998888888888764
No 363
>PF13934 ELYS: Nuclear pore complex assembly
Probab=68.80 E-value=86 Score=27.94 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=54.3
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHH
Q 036287 185 YNSLIAGL--AMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262 (488)
Q Consensus 185 ~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 262 (488)
+...+.|| ..++++++|++.+..- .+.|+.. ..++.++...|+.+.|..+++.+.- .-.+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 34444443 3456666666666321 1222221 1355666666777777777776542 12222233333333
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Q 036287 263 LSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 299 (488)
..++.+.+|..+.+...-.-....|..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 455777777777766532212346666666665443
No 364
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.41 E-value=41 Score=27.47 Aligned_cols=76 Identities=11% Similarity=0.244 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcC---------CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVK---------VKDTVCWTAMIDGLVRNGE-MARALDLFREMQRDNVRPNEVTIVCVL 123 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 123 (488)
|.++.-...-+++.....+++.+. ..+..+|++++.+.++..- ---+..+|.-|++.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444455555555554443 2345577777777765555 334567777777777778888888888
Q ss_pred HHHHhc
Q 036287 124 SACSQL 129 (488)
Q Consensus 124 ~~~~~~ 129 (488)
.+|.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 776554
No 365
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.05 E-value=53 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999998876
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.73 E-value=1e+02 Score=28.37 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=78.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCchHHHHHHHHH----HHHcCCCCcHhHHH
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVT-------IVCVLSACSQLGALELGRWIHSY----MGKHRIDLNHIVGG 155 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~ 155 (488)
+.+..++.+++++|+..|.+....|+..|..+ ...+...|...|+...-.+.... |.+-.-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556677888889988888888887766544 34456667777765443333222 22222233445556
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhccc----CCH-----HHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCHHHH
Q 036287 156 ALINMYSRC-GDIDKALQVFEEMKE----RDV-----TTYNSLIAGLAMHGRSIEAVEMFREM----INQGIRPTKVTF 220 (488)
Q Consensus 156 ~li~~y~~~-g~~~~A~~~~~~~~~----~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~ 220 (488)
+|++.+... ..++.-.++.....+ .+. ..-.-+|..+.+.|++.+|+.+...+ .+..-+|+..+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 677666543 345665555554432 111 12234678889999999999876544 444455655443
No 367
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.78 E-value=23 Score=25.95 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=24.2
Q ss_pred HcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 036287 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 62 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 100 (488)
..|+.+.|.++++.++ +....|...++++...|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666777776666 6666666666666666654444
No 368
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.05 E-value=56 Score=29.64 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhc--CCCCch----hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDC--RSADSG----TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
..+.++++.--....+.+.-...++..++. +..|.. +-.-|...|...|.+....++++++..
T Consensus 105 EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 105 EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544331 122222 223567777777777777777776643
No 369
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.85 E-value=1e+02 Score=28.95 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCCCc
Q 036287 303 LGEQIAKRLLDCRSADS 319 (488)
Q Consensus 303 ~a~~~~~~~~~~~p~~~ 319 (488)
.|.+...++.+.+|.-+
T Consensus 380 ~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHhhcCCCCc
Confidence 35566666777776554
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.05 E-value=13 Score=26.62 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=22.7
Q ss_pred ccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYD 274 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 274 (488)
+....++|+..|....+...-.|+ -.+..+|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555543222222 2344555556666665555544
No 371
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.77 E-value=18 Score=26.82 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 306 QIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 306 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
..++..++.+|.|...-..+...+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455556667777777777777777778887777777776554
No 372
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=64.04 E-value=47 Score=32.65 Aligned_cols=45 Identities=16% Similarity=0.091 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
.+++-.++++.+.+.| .+| +...-++.|.+.+++++|...+++-.
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~ 113 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESI 113 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhh
Confidence 4566666666666665 222 33345777888888888877777654
No 373
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.99 E-value=1.2e+02 Score=32.04 Aligned_cols=181 Identities=13% Similarity=0.145 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccc-CCH---H-------HHHHHHHHHHhcCChhHH
Q 036287 136 RWIHSYMGKHRIDLN---HIVGGALINMYSRCGDIDKALQVFEEMKE-RDV---T-------TYNSLIAGLAMHGRSIEA 201 (488)
Q Consensus 136 ~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~---~-------~~~~li~~~~~~g~~~~A 201 (488)
..++..|.+.--.|+ ..+...++-.|....+++...++.+.++. ||. + .|.-.++---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 344555655432333 23344556667777788888777776654 322 1 122222222244667777
Q ss_pred HHHHHHHHHc--CCCCCHHH-----HHHH--HHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC-hHH
Q 036287 202 VEMFREMINQ--GIRPTKVT-----FVGV--LNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR-PEE 271 (488)
Q Consensus 202 ~~l~~~m~~~--g~~p~~~t-----~~~l--l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~ 271 (488)
+...-.|.+. .+.||... |.-+ -+.|...+..+.|.+.|++.- .+.|+...--.+...+..+|. ++.
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccc
Confidence 7777766653 25566532 2211 123555667778888887764 456664433223333333332 222
Q ss_pred HHHHHHhC--------CCCCC----HHHH--HHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 272 AYDFITNM--------KIAPD----HIML--GSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 272 A~~~~~~m--------~~~p~----~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
..++ +.+ +-+-. ..-| ...+.+-.-.+++.+|.++.+.|.++.||...
T Consensus 340 s~El-q~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 340 SLEL-QQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred hHHH-HHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 2211 111 11111 0111 23345556678999999999999999988643
No 374
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.94 E-value=71 Score=29.26 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=50.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh
Q 036287 188 LIAGLAMHGRSIEAVEMFREMIN--QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR 265 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 265 (488)
=|.+++..+++.+++...-+--+ +.++|...-... -.|++.+.+....++-..-... .-.-+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI--LLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI--LLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHH
Confidence 36777777888777765444332 224444333332 3367777777777766665543 112223347766666654
Q ss_pred -----cCChHHHHHHHHh
Q 036287 266 -----VGRPEEAYDFITN 278 (488)
Q Consensus 266 -----~g~~~~A~~~~~~ 278 (488)
.|.+++|++++..
T Consensus 166 ~VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHHhccccHHHHHHHHhc
Confidence 5788888877743
No 375
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.70 E-value=65 Score=24.71 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=41.2
Q ss_pred ChHHHHHHHhhCCCCCc--eeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 33 EFKDAMQLFDEMPECND--VVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 33 ~~~~A~~~~~~m~~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
..++|..+.+.+...+. .++--.-+..+...|++++|+..=.....||...|-+|-. .+.|-.+++...+.++-..
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34555555544433331 1111123455677788888855555556778888766654 3677777777777777665
Q ss_pred C
Q 036287 111 N 111 (488)
Q Consensus 111 g 111 (488)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 376
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.03 E-value=1.3e+02 Score=27.98 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=14.7
Q ss_pred HHHHHHHHhc-CChHHHHHHHhhCCC
Q 036287 22 LKLVELYGKC-GEFKDAMQLFDEMPE 46 (488)
Q Consensus 22 ~~li~~y~~~-g~~~~A~~~~~~m~~ 46 (488)
.+++..|... |+++...+.++..-.
T Consensus 33 da~vq~~~~~~gdle~vak~ldssg~ 58 (412)
T KOG2297|consen 33 DAVVQGLEDNAGDLELVAKSLDSSGN 58 (412)
T ss_pred HHHHHHHHhcCccHHHHHHHHHhccc
Confidence 4566666654 566666666665533
No 377
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.81 E-value=2.3e+02 Score=30.84 Aligned_cols=126 Identities=14% Similarity=0.215 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHH---HHHcCCH
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDG---LVRNGEM 97 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~---~~~~g~~ 97 (488)
|..|+..|...|+.++|++++......+. .+=..... .++.-++.+.....++. .||-. ..-+.++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~-~~d~~~~~------~~e~ii~YL~~l~~~~~----~Li~~y~~wvl~~~p 575 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDS-DTDSFQLD------GLEKIIEYLKKLGAENL----DLILEYADWVLNKNP 575 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccc-ccccchhh------hHHHHHHHHHHhcccch----hHHHHHhhhhhccCc
Confidence 56677777777777777777766655330 00000111 11122333333333321 11111 2234566
Q ss_pred HHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 98 ARALDLFRE---MQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 98 ~~A~~~~~~---m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
+...++|.. -....+.++.+ -.+......+.+..+++.++...-.++....+.++..|++
T Consensus 576 ~~gi~Ift~~~~~~~~sis~~~V------l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 576 EAGIQIFTSEDKQEAESISRDDV------LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhheeeeeccChhhhccCCHHHH------HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 667777755 11122333221 1234455666677777777666555566666777777664
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.47 E-value=1.1e+02 Score=29.72 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=36.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHhccc
Q 036287 191 GLAMHGRSIEAVEMFREMINQGIRPTKV--TFVGVLNACS--HGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 245 (488)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344788899999999998886 555554 2333444443 35677888888887764
No 379
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.09 E-value=22 Score=30.12 Aligned_cols=46 Identities=20% Similarity=0.090 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC----hHHHHHHHHHHH
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK----WKEAVQIRAKMK 346 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 346 (488)
+++|..-|++++.++|+...++..++++|...+. ..+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4667777888888999999999999999987554 445555555543
No 380
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.72 E-value=16 Score=20.20 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888877777666665543
No 381
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.21 E-value=5 Score=37.38 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCChhHHHHH
Q 036287 230 GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDH-IMLGSLLSACKIHGKLQLGEQI 307 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~ 307 (488)
.|.++.|.+.|...++. -+|....|.--..++.+.++...|++=+... .+.||. ..|-.=-.+-+..|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred Ccchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 35555665555555421 1222333333344444555555554444433 334431 1222222233344555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 308 AKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 308 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
++...+++-+. .+-..|-...-+.+..++-...+++.
T Consensus 205 l~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 205 LALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHH
Confidence 55555544221 22223333334444444444444433
No 382
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=61.08 E-value=1.1e+02 Score=26.39 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=32.0
Q ss_pred hCCCCchhhHHHHHHHHHhcC----ChHHHHHHHhhCCCCCceeeHH-------HHHHHHHHcCCHHHHHHHHhhc
Q 036287 12 LGLRSNRSTRLKLVELYGKCG----EFKDAMQLFDEMPECNDVVAST-------VMINCYVEHGLVENAFEVFSRV 76 (488)
Q Consensus 12 ~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~~~~~~~~~-------~li~~~~~~g~~~~A~~~f~~~ 76 (488)
.|+-+|+.-++.++..+.+.. .++-+..+=.+...++....|. .-+..|-+.||+.+--.+|-..
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv 77 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV 77 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH
Confidence 466777777777777665543 3333333333332222122222 2234445556666555555443
No 383
>PRK12798 chemotaxis protein; Reviewed
Probab=60.83 E-value=1.7e+02 Score=28.59 Aligned_cols=180 Identities=16% Similarity=0.207 Sum_probs=112.6
Q ss_pred cCCHHHHHHHHHhccc----CCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHH
Q 036287 164 CGDIDKALQVFEEMKE----RDVTTYNSLIAGLA-MHGRSIEAVEMFREMINQGIRPTK----VTFVGVLNACSHGGLVD 234 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 234 (488)
.|+.++|.+.+..+.. +....+-+|+.+-. ...++.+|+.+|++..- .-|-. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6889999999988774 34456777776644 45679999999998765 23432 33444455667889988
Q ss_pred HHHHHHHhcccccCcccChhh-HHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHH
Q 036287 235 LGFEIFQSMTRDYGIEPQIEH-YGCIVDLLSRVG---RPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKR 310 (488)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 310 (488)
++..+-..-.+.|.-.|-... +..++..+.+.+ ..+.-..++..|.-.--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 887766655554444444322 233344444433 3445555666663222367888899999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHh-----cCCChHHHHHHHHHHH
Q 036287 311 LLDCRSADSGTYVLLSNAYA-----SSGKWKEAVQIRAKMK 346 (488)
Q Consensus 311 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~ 346 (488)
+..+...+ ..-...+..|. -..+.+++.+.+..+-
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 98875322 22223333332 3344666666555443
No 384
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.17 E-value=57 Score=28.76 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhCChh-------HHHHHHHHHHhcC--CC----CchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 285 HIMLGSLLSACKIHGKLQ-------LGEQIAKRLLDCR--SA----DSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+..+.-+...|...|+.+ .|...|++..+.. |. .......++..+.+.|+.++|.+.|.++...+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344555666677777744 4555555555533 22 23456678888999999999999999987653
No 385
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.86 E-value=40 Score=30.05 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=21.0
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
+..+++.+..--++.+++.|+.......|.........+++|...+.+
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.77 E-value=42 Score=34.03 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHhcc--CCHHHHHHHHHhcccccCcccChhhHHHHHHHHH-hcCChHHHHHHHHhC-CCCC--CHHHH
Q 036287 215 PTKVTFVGVLNACSHG--GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLS-RVGRPEEAYDFITNM-KIAP--DHIML 288 (488)
Q Consensus 215 p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m-~~~p--~~~~~ 288 (488)
|+..+...++.-.... ...+-|-.++..|.. .+.|--...|. ...|- -.|+...|...+... ..+| ..+..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 4555554444433321 223444455555542 33443222222 22233 357788888777665 3333 23344
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 289 GSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
..|.....+.|-...|-.++.+.+.+....+-++..++++|....+.+.|++.|+...++
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 456666666777777888888888877667778888888888888888888888877654
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.53 E-value=40 Score=26.64 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHH
Q 036287 200 EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIV 260 (488)
Q Consensus 200 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 260 (488)
+..+-++.+....+.|+....-..+.||.+.+++..|..+|+.+..+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 45555666666778888888888899999999999999988888753 333333555444
No 388
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.42 E-value=1.5e+02 Score=27.41 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHCC
Q 036287 96 EMARALDLFREMQRDN 111 (488)
Q Consensus 96 ~~~~A~~~~~~m~~~g 111 (488)
+..+|...|++.-+.|
T Consensus 128 d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 128 DLVKALKYYEKAAKLG 143 (292)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4555555555555554
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.09 E-value=38 Score=29.19 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 280 KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 280 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
...|++.++..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567778888888888888888888888888777777
No 390
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=59.08 E-value=1.6e+02 Score=27.65 Aligned_cols=83 Identities=18% Similarity=0.008 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcccccCc---ccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 233 VDLGFEIFQSMTRDYGI---EPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
.+.|.+.|........- ..++.....+.....+.|..+.-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 67778888887752111 334455556666667777766655555555545677888889999888899998889999
Q ss_pred HHHhcC
Q 036287 310 RLLDCR 315 (488)
Q Consensus 310 ~~~~~~ 315 (488)
.+..-+
T Consensus 226 ~~l~~~ 231 (324)
T PF11838_consen 226 LLLSND 231 (324)
T ss_dssp HHHCTS
T ss_pred HHcCCc
Confidence 888843
No 391
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.38 E-value=1.6e+02 Score=27.63 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=45.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcccc---cCcccChhhHHHHHHH-HH----hcCChHHHHHHHHhCCC---CCCHHH
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMTRD---YGIEPQIEHYGCIVDL-LS----RVGRPEEAYDFITNMKI---APDHIM 287 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~li~~-~~----~~g~~~~A~~~~~~m~~---~p~~~~ 287 (488)
........|++.|+-+.|.+.+....++ .|.+.|+..+..-+.. |. -...+++|..++++-+- +.-..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444556677777777777776654432 2444454433322221 11 12345556666655421 111233
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
|..+- |....++.+|-.+|-..+.
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 33332 3344566666666665544
No 392
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.17 E-value=2.4e+02 Score=29.55 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=38.7
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE-------MARALDLFREMQRDNVRPNEV 117 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~ 117 (488)
...| ++|--+.++|++++|.++..... .+....+-..+..|..+.+ -++...-|++..+.....|++
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 4555 56778899999999999993332 3334556667777766432 235555666665543322543
No 393
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.13 E-value=2.3e+02 Score=29.26 Aligned_cols=173 Identities=9% Similarity=0.052 Sum_probs=89.9
Q ss_pred HHHHHHHHhhcCCC-CHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 036287 66 VENAFEVFSRVKVK-DTVCWTAMIDG-----LVRNGEMARALDLFREMQR-------DNVRPNEVTIVCVLSACSQLG-- 130 (488)
Q Consensus 66 ~~~A~~~f~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-- 130 (488)
...|.+.++..... ++..-..+... +....+.+.|+..|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766533 33333333222 4455678888888887766 44 2234445555555432
Q ss_pred ---chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhcccC-CHHHHHHHHHHHH----hcCChhHH
Q 036287 131 ---ALELGRWIHSYMGKHRIDLNHIVGGALINMYSR-CGDIDKALQVFEEMKER-DVTTYNSLIAGLA----MHGRSIEA 201 (488)
Q Consensus 131 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A 201 (488)
+.+.|..++....+.|. |+....-..+..... ..+...|.++|...... .+.+.--+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 55678888888777773 343333222222222 23567777777776543 2322222222222 22356777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 202 VEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 202 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
..++++..+.| .|-..--...+..+.. +..+.+.-.+..+.
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 77777777766 3332222233333333 55555444444443
No 394
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=57.42 E-value=34 Score=24.95 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=19.8
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 97 (488)
+...+.++|.++++.++.+...+|.++..++...|..
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 3344455555555555555555555555555555443
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.71 E-value=23 Score=32.66 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=34.2
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036287 79 KDTV-CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVL 123 (488)
Q Consensus 79 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 123 (488)
+|.. -||..|..-.+.|+.++|++++++..+.|+.--..||...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3444 46789999999999999999999999988765555554433
No 396
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=55.61 E-value=40 Score=24.59 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=45.4
Q ss_pred hHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHH
Q 036287 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENA 69 (488)
Q Consensus 3 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A 69 (488)
..|++++++.|+ .+....-...+...+.+.|.++++.++.++ ..+|.++.+++-..|...-|
T Consensus 19 ~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG-~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRG-KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCchHHH
Confidence 346677777764 222233334445678999999999999999 99999999999888865544
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.46 E-value=66 Score=25.50 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=35.4
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 278 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
.+.+-|++.+...-+.+|.+.+|+..|.++++-+...-++....|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 346778888899999999999999999999988866433332345443
No 398
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=55.23 E-value=1.7e+02 Score=26.75 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc-------hhHHHHHHH
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS-------GTYVLLSNA 328 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~ 328 (488)
|-.++-.|.|.-+...--.+|...+ .| ..|+.-|.+.|+++.|-.++--+...++.+. ..-..|+.+
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~ 229 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVM 229 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Confidence 3334444555545555556666665 33 3677889999999999988888876664332 233467778
Q ss_pred HhcCCChHHHHHHHHHHHhC
Q 036287 329 YASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~~ 348 (488)
....++|+-+.++.+-++.-
T Consensus 230 a~~~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 230 ALESGDWDLCFELVRFLKAL 249 (258)
T ss_pred HHhcccHHHHHHHHHHHHHh
Confidence 88999999999998887653
No 399
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.93 E-value=13 Score=29.71 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=25.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
....|.-.+|..+|.+|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457777899999999999999986 55566543
No 400
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.81 E-value=16 Score=29.22 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=26.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 227 (488)
....|.-.+|-.+|++|++.|-+||. ++.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456777899999999999999985 55666554
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.37 E-value=1.2e+02 Score=27.14 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=4.5
Q ss_pred ccCCCcccc
Q 036287 397 YSPSTEVVL 405 (488)
Q Consensus 397 ~~pd~~~~~ 405 (488)
+.|++.+-+
T Consensus 248 fdpvtr~~L 256 (284)
T KOG4642|consen 248 FDPVTRWPL 256 (284)
T ss_pred CCchhcccC
Confidence 455555443
No 402
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.22 E-value=1.2e+02 Score=24.80 Aligned_cols=50 Identities=14% Similarity=0.320 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 181 DVTTYNSLIAGLAMHGR-SIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 181 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
+-.+|++++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34456666666644443 233556666666656666666666666666553
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.80 E-value=35 Score=29.41 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=19.5
Q ss_pred CcccChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 248 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
...|++.+|..++..+...|+.++|.+..+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33566666666666666666666666666555
No 404
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.46 E-value=2.3e+02 Score=27.90 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=30.4
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036287 83 CWTAMIDGLVR---NGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG 130 (488)
Q Consensus 83 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 130 (488)
.+..+++++.+ ..+++.|+..+.+|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455555555 4778888888888888887666555544444444433
No 405
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.13 E-value=32 Score=24.63 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=31.3
Q ss_pred HhCChhHHHHHHHHHHhcCCCCc---hhHHHHHHHHhcCCChHHHHHH
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADS---GTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
...+.+.|+..++.+++..++.+ .++..|+.+|+..|+++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888887554433 3455677788888888877765
No 406
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.06 E-value=19 Score=38.05 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=65.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHH
Q 036287 195 HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYD 274 (488)
Q Consensus 195 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 274 (488)
+.++++.+.+.+.-.--| .+++..+.+.|.++-|+.+.+.-..++ .....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 455666665554322211 235555667777777776655433322 23446889999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 036287 275 FITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR 315 (488)
Q Consensus 275 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 315 (488)
.-+++. +..+|..|.......|+.+.|+..|++....+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 888775 77899999999999999999999988875533
No 407
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.28 E-value=10 Score=37.06 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=64.9
Q ss_pred HHHHhccCCHHHHHHHHHhcccccCcccChhhH-HHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCC
Q 036287 224 LNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHY-GCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGK 300 (488)
Q Consensus 224 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 300 (488)
+......+.++.|..++.+++ .+.|+-..| ..=..++.+.+++..|+.=+... ...|+ ...|.-=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 444556678899999998888 457764444 33347788888888887655444 55554 2334333456777788
Q ss_pred hhHHHHHHHHHHhcCCCCch
Q 036287 301 LQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~ 320 (488)
+.+|...|+....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 88888889888888888853
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.24 E-value=29 Score=32.02 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
-||..|....+.||+++|++++++..+.|+.--..||...++
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 367899999999999999999999999998776777765443
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.84 E-value=42 Score=33.98 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=71.6
Q ss_pred ccCCHHHHHHHHHhcccccCcccC--hhhHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChhHH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQ--IEHYGCIVDLLSRVGRPEEAYDFITNM-KI-APDHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 304 (488)
-.|+...|...+..... ..|- ......|...+.+.|..-+|..++.+. .+ ...+.++.++.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 35788888887776653 3332 234455677777888888888877654 22 22467788889999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHH
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
++.|+.++++.|+++..-..|...
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999998877766544
No 410
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.66 E-value=2.2e+02 Score=26.99 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh---cCCHHHHHHH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR---CGDIDKALQV 173 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---~g~~~~A~~~ 173 (488)
.+.-+.++++.++.+ +-+.......+..+.+..+.+...+-++.++... +-+..+|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345566777777663 3455556667777777777777777777777653 3355666665554332 1234444444
Q ss_pred HHh
Q 036287 174 FEE 176 (488)
Q Consensus 174 ~~~ 176 (488)
|.+
T Consensus 125 y~~ 127 (321)
T PF08424_consen 125 YEK 127 (321)
T ss_pred HHH
Confidence 443
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.51 E-value=1.9e+02 Score=26.36 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=72.6
Q ss_pred HcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCch-----
Q 036287 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM----QRDNVRPNEVTIVCVLSACSQLGAL----- 132 (488)
Q Consensus 62 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~----- 132 (488)
+.+++++|.+++..- ...+.++|+...|-++-..| .+.+.++|......++......+.-
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 445566666654331 22344455544443333222 2345555555555555544433321
Q ss_pred HHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 133 ELGRWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 133 ~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
+-..+..+.. +.| ..-++.....+...|.+.|++.+|+..|-.-.+++...+-.++......|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------
Confidence 1122222222 222 2236778888999999999999999888665544444443344333333433333
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 211 QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 211 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
|...-.+++ -|...+++..|...+....+
T Consensus 141 -----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 -----DLFIARAVL-QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp -----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 111122222 24445677777776665553
No 412
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=51.16 E-value=64 Score=26.26 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=43.0
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC
Q 036287 269 PEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333 (488)
Q Consensus 269 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 333 (488)
-+.|.++.+-|+ ...............|++..|..+.+.++..+|+|...-....++|...|
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 345667777774 33444445566778899999999999999999999887777777765544
No 413
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.34 E-value=39 Score=22.88 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 181 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
|..-.-.+|.+|.+.|++++|.+.++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666777776666666544
No 414
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=49.63 E-value=50 Score=32.37 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=27.9
Q ss_pred CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 280 KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 280 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
+++|. ..+..+-+..+.+++|+..|..+.+++++++|+.
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 45553 3456677778889999999999999999998765
No 415
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.48 E-value=2.2e+02 Score=26.35 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=30.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHhccCCHHHH
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRPTKVT-------FVGVLNACSHGGLVDLG 236 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a 236 (488)
+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 344567788888888888888877666543 34445555555554433
No 416
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.27 E-value=3.5e+02 Score=28.64 Aligned_cols=224 Identities=9% Similarity=-0.061 Sum_probs=109.1
Q ss_pred CchHHHHHHHHHHHHcC-CCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHhcCChhHHHHH
Q 036287 130 GALELGRWIHSYMGKHR-IDLN--HIVGGALINMYSRCGDIDKALQVFEEMKER--DVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
.+.+.|...+....... +.+. ..+...+..-.+..+..+.|...++..... |...+..-+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34566666666553322 2222 112222322222222244555555544321 222233333333466666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-----------Ccc-----c-Chh--------hHHHH
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-----------GIE-----P-QIE--------HYGCI 259 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----------~~~-----p-~~~--------~~~~l 259 (488)
+..|-.. ..-...-.--+..+....|+.++|..+|..+.... |.+ | ... .-..-
T Consensus 335 i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 6665432 12222333345555555677777766666554321 111 0 000 01122
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC---CCchhHHHHHHHHhcCCChH
Q 036287 260 VDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS---ADSGTYVLLSNAYASSGKWK 336 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~ 336 (488)
+..+...|....|...+..+--..+......+.......|..+.+..........+. .-+..|...+..+++.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 344556677777777776652234555555566666677888888776655433210 11234666777776666666
Q ss_pred HHHHHHHHHHhCCCccCC
Q 036287 337 EAVQIRAKMKEAGVQKEP 354 (488)
Q Consensus 337 ~a~~~~~~m~~~g~~~~~ 354 (488)
.+.-.--...+.++.|..
T Consensus 494 ~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 494 QSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHHHhcCCCCCC
Confidence 655433333466776653
No 417
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.83 E-value=82 Score=32.56 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHHhccCCHHHHHHHHHhccccc-CcccChhhHHHHHHHHHhcCChH------HHHHHHHhCCCCCCHHHHHHHHH
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDY-GIEPQIEHYGCIVDLLSRVGRPE------EAYDFITNMKIAPDHIMLGSLLS 293 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~p~~~~~~~ll~ 293 (488)
+|+.+|...|++..+.++++...... |-+.-...||..+.-+.+.|.++ .|.+++++..+.-|..||..|+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 44555555555555555554443210 11111233444444444444432 33444444444444444444443
No 418
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.74 E-value=4e+02 Score=29.19 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 84 WTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
|..|+..|...|+.++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66788888888888888888887765
No 419
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.53 E-value=3.6e+02 Score=28.62 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=71.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC
Q 036287 191 GLAMHGRSIEAVEMFREMINQGIRPTK--VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 268 (488)
++..-|+-++|..+.++|.... .|-. .-..++..+|+..|+.....+++.-... ....|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 4556677788888999888653 2211 1234566678888888888888877664 444555555555556666677
Q ss_pred hHHHHHHHHhC--CCCCCHH--HHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 269 PEEAYDFITNM--KIAPDHI--MLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 269 ~~~A~~~~~~m--~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
++....+..-+ ...|.+. +-.+|.-+|+-.|+ .+|..+++-|..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 77666666655 3334322 22233345555554 556666666654
No 420
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.41 E-value=3.3e+02 Score=28.21 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
...|..++++....|......-+.+.+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 44555666666666655444444444433
No 421
>PRK14700 recombination factor protein RarA; Provisional
Probab=48.26 E-value=2.1e+02 Score=26.72 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHcCC
Q 036287 80 DTVCWTAMIDGLVRN---GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA-----LELGRWIHSYMGKHRI 147 (488)
Q Consensus 80 ~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 147 (488)
+...+--+|+++.++ .+++.|+-.+.+|++.|-.|.-..-..++-++-..|. +..|...++.....|+
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334444567776553 6788888888999988877776666666766666663 2334444444444453
No 422
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.99 E-value=1.1e+02 Score=30.03 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc-----------CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKE-----------RDVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
..|+..++-.|++..|+++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999887652 134566677778888999999999988765
No 423
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.88 E-value=32 Score=23.33 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 84 WTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
.-.+|.+|.+.|++++|.+..+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33456666666666666666665543
No 424
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.84 E-value=30 Score=30.62 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=36.0
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 263 LSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
..+.++.+.|.+++.+. ...| ....|-.+...-.+.|+++.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556666666666665 4334 35666666666677777777777777777776654
No 425
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.65 E-value=2.8e+02 Score=30.01 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=89.7
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFE 238 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 238 (488)
.....||+++.|++.-.++. |...|..|.......|+.+-|...|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999988777665 566899999999999999999999988764 2333334666788888777
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
+...+..+ -|... ....-.-.|+.++-.++++..+..|-. |. .-..+|.-+.|+++.++...
T Consensus 720 m~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 66655421 22111 111122358888888888888765522 21 12457888899999888866
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.23 E-value=63 Score=23.97 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=35.0
Q ss_pred HHhCChhHHHHHHHHHHhcC----CCC-----chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 296 KIHGKLQLGEQIAKRLLDCR----SAD-----SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~----p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.+.||+..|.+.+.+..+.. ... ..+...++......|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888877777766632 111 12334566778889999999999988754
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.10 E-value=73 Score=20.23 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
..+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3466777788888888888887777777666654
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.93 E-value=1.1e+02 Score=31.80 Aligned_cols=43 Identities=9% Similarity=0.103 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCH
Q 036287 55 VMINCYVEHGLVENAFEVFSRVKVK------DTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~ 97 (488)
+|..+|...|++..+.++++..... =...+|..|+...++|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4445555555555555554443311 123455555555555543
No 429
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.54 E-value=4.7e+02 Score=29.44 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=15.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcc
Q 036287 158 INMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~ 178 (488)
.-+|..+|...+|...|.+..
T Consensus 927 g~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred heeeecCCchHHHHHHHHHHh
Confidence 345777888888888887654
No 430
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=46.13 E-value=2.1e+02 Score=25.33 Aligned_cols=59 Identities=8% Similarity=0.021 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.+.-++.+.+.+...+|+...++-++.+ +.|..+-..++..++-.|++++|..-++...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3445666777777888887777766642 2334444456677777788888876666554
No 431
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=45.88 E-value=70 Score=23.64 Aligned_cols=34 Identities=6% Similarity=0.155 Sum_probs=19.1
Q ss_pred HcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q 036287 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNG 95 (488)
Q Consensus 62 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 95 (488)
..-+.+++.++++.++.+...+|..+..++-..+
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 3344555666666666666666666666554433
No 432
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.43 E-value=3e+02 Score=26.85 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDN--VRPNEVTIVCVLSACSQLGALELGRWIHSYMG 143 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 143 (488)
.+.-+..-|...|+.+.|++.|.+.+.-- .+-....|..++....-.|++.....+-....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 45556666777777777777777754321 11122344444555555555555544444443
No 433
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.33 E-value=1.2e+02 Score=24.72 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQL 129 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 129 (488)
..++..+.+.++.-.|.++|+++.+.+...+..|.-..|..+...
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 344444444444455555555555544444444444444443333
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.54 E-value=1.5e+02 Score=23.46 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhc--CCCCchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 302 QLGEQIAKRLLDC--RSADSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 302 ~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
+.+..+|+.|... +..-+..|...+..+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3777778877663 455666777888888888888888888764
No 435
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.50 E-value=2.4e+02 Score=25.36 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCchHHHHHHHHHHH
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS-QLGALELGRWIHSYMG 143 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~ 143 (488)
-++..+-+.|+++++...++++...+...+..--+.+-.+|- ..|....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 356677788999999999999988877777766666666663 2344445555555543
No 436
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.23 E-value=2.2e+02 Score=26.97 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc-------CCHHHH--HHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCH
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKE-------RDVTTY--NSLIAGLAMHGRSIEAVEMFREMIN-----QGIRPTK 217 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~ 217 (488)
.....++...-++++.++|.+.++++.+ |+.+.| ..+...+...|+..++.+++.+... .|++|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HHHHHHHHH--HhccCCHHHHHH
Q 036287 218 VTFVGVLNA--CSHGGLVDLGFE 238 (488)
Q Consensus 218 ~t~~~ll~a--~~~~g~~~~a~~ 238 (488)
.+--..+++ |-..|++.....
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.05 E-value=83 Score=19.98 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=17.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVL 123 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 123 (488)
.+.|-..++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554444
No 438
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.92 E-value=1.1e+02 Score=25.77 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChH
Q 036287 231 GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
...-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 39 ~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 39 PGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3444555555555543 33344444334455555555543
No 439
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.80 E-value=2.9e+02 Score=25.86 Aligned_cols=80 Identities=13% Similarity=0.026 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHcCC----CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036287 132 LELGRWIHSYMGKHRI----DLNHIVGGALINMYSRCGDIDKALQVFEEMKE-RDVTTYNSLIAGLAMHGRSIEAVEMFR 206 (488)
Q Consensus 132 ~~~a~~~~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~ 206 (488)
.+.+.+.+......+. ..+......+.....+.|+.+.-..+++.... ++......++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4455666666555321 23444445555555666665554444444443 344555666666666666666666666
Q ss_pred HHHHc
Q 036287 207 EMINQ 211 (488)
Q Consensus 207 ~m~~~ 211 (488)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 65554
No 440
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=42.38 E-value=5.2e+02 Score=28.70 Aligned_cols=255 Identities=13% Similarity=0.059 Sum_probs=149.7
Q ss_pred HHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036287 39 QLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVT 118 (488)
Q Consensus 39 ~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 118 (488)
.+...+..++ +.+-..-+..+.+.+..+....+...+..+|...-...+.++.+.+........+..++.. +|...
T Consensus 625 ~L~~~L~D~d-~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~V 700 (897)
T PRK13800 625 ELAPYLADPD-PGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVV 700 (897)
T ss_pred HHHHHhcCCC-HHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHH
Confidence 3344444444 7777777788888777554455555566666655555555555443322222334444442 56666
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCCh
Q 036287 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRS 198 (488)
Q Consensus 119 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 198 (488)
-...+.++...+..+ ...+.. ..+ .+|..+-...+.+..+.+..+ .+.....+++...-...+.++...+..
T Consensus 701 R~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 701 RAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 666667666544221 112222 222 456666666777776665543 334445567777777777788777765
Q ss_pred hH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHH
Q 036287 199 IE-AVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFIT 277 (488)
Q Consensus 199 ~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 277 (488)
+. +...+..+.. .+|...-...+.++...|..+.+...+..+.+ .++..+-...+.++++.+.. ++...+.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 43 4455555554 45677777788888888876655444444443 35666666777888887764 4555554
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 278 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
.+--.|+..+-...+.++........+...+..+++
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 443356777777777777775434456666666655
No 441
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.32 E-value=3.5e+02 Score=26.69 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 185 YNSLIAGLAM---HGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 185 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444555444 46778888888888887777765443333333
No 442
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.05 E-value=1e+02 Score=22.77 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=19.1
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 290 SLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 290 ~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
.+.......|+.++|...+++++++
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445567779999999999988874
No 443
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.60 E-value=3e+02 Score=25.74 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=12.7
Q ss_pred HHHHHHHHHhccCCHHHHH
Q 036287 219 TFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~ 237 (488)
+|..|+.+++..|+.+..+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 4666777777777766544
No 444
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=41.54 E-value=30 Score=24.77 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=19.6
Q ss_pred ccHHHHHHHHHHHHHHHHHcCccCCCcccc
Q 036287 376 PQREQIYKKMQELKQIVKLEGYSPSTEVVL 405 (488)
Q Consensus 376 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 405 (488)
+...++++.+++...+++..|+.||...+-
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL~G 34 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVLVG 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEEE-
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 345567778888899999999999987653
No 445
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.34 E-value=2.1e+02 Score=29.12 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCC--HH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 53 STVMINCYVEHGLVENAFEVFSRVKVKD--TV---CWTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f~~~~~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
...++.-|.+++++++|..++..|.-.. .. +.+.+.+...+..--.+....++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3456777888888888888888876331 22 333444444444434444444444443
No 446
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.17 E-value=2.2e+02 Score=25.70 Aligned_cols=86 Identities=17% Similarity=0.038 Sum_probs=59.7
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCCHHHHH-----------HHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 262 LLSRVGRPEEAYDFITNM---------KIAPDHIMLG-----------SLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~-----------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
-+.+.|++.+|..-+++. .-+|-..-|. .+-..+...|++-++++....++...|.|..+
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345566666665555443 3344433332 23344567788999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 322 YVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|..-+.+.+..=+.++|..=|....+
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 99888888877777888877777655
No 447
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.04 E-value=1.6e+02 Score=24.11 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036287 186 NSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG 231 (488)
Q Consensus 186 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 231 (488)
..++..+.+.++.-.|.++++++.+.+..-+..|....|..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555555555566666666666555555555555555555444
No 448
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=40.77 E-value=1.2e+02 Score=22.24 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=20.7
Q ss_pred HcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHH
Q 036287 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMA 98 (488)
Q Consensus 62 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 98 (488)
+..+.++|..+.+.++.+...+|.+..+++-..|...
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~ 76 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKD 76 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChH
Confidence 3444556666666666666666666666555544433
No 449
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.60 E-value=1.2e+02 Score=25.45 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG 130 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 130 (488)
.++..+...++.-.|.++++++.+.+..++..|....|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333334444445555555554444444444444444443333
No 450
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.95 E-value=2.9e+02 Score=25.03 Aligned_cols=89 Identities=11% Similarity=-0.026 Sum_probs=63.0
Q ss_pred HHHHHHcCCHHHHHHHHhhcC----------CCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036287 57 INCYVEHGLVENAFEVFSRVK----------VKDTV-----------CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN 115 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~----------~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 115 (488)
.+-+.+.|++.+|..-|.... .|... .+-.+-+++...|++-++++.-.+.+... +-|
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cch
Confidence 445688899998887766542 33222 23334456667788888988888888763 557
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHcC
Q 036287 116 EVTIVCVLSACSQLGALELGRWIHSYMGKHR 146 (488)
Q Consensus 116 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 146 (488)
...|..-..+.+..-+.++|+.=+..+++..
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 7788888888888888888888888887654
No 451
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=39.84 E-value=1e+02 Score=22.77 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHH
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVE 67 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~ 67 (488)
.|.+++++.|+-.+. -.-...+..-+.+.+.++++.++.++ +.+|..+..++...+...
T Consensus 24 ~v~~~L~~~gvlt~~----~~~~I~~~~t~~~k~~~Lld~L~~RG-~~AF~~F~~aL~~~~~~~ 82 (90)
T cd08332 24 ELLIHLLQKDILTDS----MAESIMAKPTSFSQNVALLNLLPKRG-PRAFSAFCEALRETSQEH 82 (90)
T ss_pred HHHHHHHHcCCCCHH----HHHHHHcCCCcHHHHHHHHHHHHHhC-hhHHHHHHHHHHhcChHH
Confidence 466777777743322 22233445568899999999999999 999999999997665433
No 452
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.39 E-value=1.2e+02 Score=25.84 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=10.9
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036287 261 DLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m 279 (488)
-.|.+.|.+++|.+++++.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHhcCchHHHHHHHHHH
Confidence 3455566666666666555
No 453
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.33 E-value=4.1e+02 Score=26.61 Aligned_cols=209 Identities=11% Similarity=0.083 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCc-eeeHHHHHHH-----HHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHH
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECND-VVASTVMINC-----YVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGL 91 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~li~~-----~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~ 91 (488)
..+.+...++.|+.+-...+++.-...+. .....+.+.. ....|+.+-+.-+++.-... |...++.|..+.
T Consensus 35 ~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~ 114 (480)
T PHA03100 35 PVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAI 114 (480)
T ss_pred cchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHH
Confidence 34566677788888888888876544321 1111233344 56667777766666654332 222233333333
Q ss_pred H-HcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcC--chHHHHHHHHHHHHcCCCCcHh--HHHHHHHHHHhc
Q 036287 92 V-RNGEMARALDLFREMQRDNVRPNEVT--IVCVLSACSQLG--ALELGRWIHSYMGKHRIDLNHI--VGGALINMYSRC 164 (488)
Q Consensus 92 ~-~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~ 164 (488)
. ..|+.+- ++.+.+.|..++... -.+.+..++..| +.+ +.+.+.+.|..++.. ...+.+...+..
T Consensus 115 ~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 115 SKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred hcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence 2 4454443 344445555443221 123444555555 444 344455566544322 223456667778
Q ss_pred CCHHHHHHHHHhcccCCH--------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCH
Q 036287 165 GDIDKALQVFEEMKERDV--------TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV---TFVGVLNACSHGGLV 233 (488)
Q Consensus 165 g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~ 233 (488)
|+.+-+.-+++.-..++. ..+.+.+...+..|+ ...++.+.+.+.|..++.. ..+.+..| +..|..
T Consensus 187 ~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A-~~~~~~ 263 (480)
T PHA03100 187 GNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYA-VYNNNP 263 (480)
T ss_pred CCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCH
Confidence 888877777765443321 111333344444554 1234445555666554422 23334333 344555
Q ss_pred HHHHHHH
Q 036287 234 DLGFEIF 240 (488)
Q Consensus 234 ~~a~~~~ 240 (488)
+-+..++
T Consensus 264 ~iv~~Ll 270 (480)
T PHA03100 264 EFVKYLL 270 (480)
T ss_pred HHHHHHH
Confidence 5444444
No 454
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.14 E-value=5.4e+02 Score=27.98 Aligned_cols=215 Identities=11% Similarity=-0.004 Sum_probs=108.6
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcH-------hHHHHHH-HHHHhcCCHHHHHHHHHhccc--------CCHHHHHHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNH-------IVGGALI-NMYSRCGDIDKALQVFEEMKE--------RDVTTYNSLIA 190 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li-~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 190 (488)
....++++|..+..++...-..|+. ..+++|- ..-...|+++.|.++-+.... ..++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3455677777776666443222211 1222221 122335777887776655432 35667777888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH---HH--HHHhccCCHH--HHHHHHHhcccccCcc-----cChhhHHH
Q 036287 191 GLAMHGRSIEAVEMFREMINQGIRPTKVTFVG---VL--NACSHGGLVD--LGFEIFQSMTRDYGIE-----PQIEHYGC 258 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---ll--~a~~~~g~~~--~a~~~~~~~~~~~~~~-----p~~~~~~~ 258 (488)
+..-.|++++|..+..+..+..-.-|...|.. +. ..+...|+.. +....|......+.-. +-...+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999888877665422233332222 11 2244556332 2233333333221111 12234445
Q ss_pred HHHHHHhcCChHHHHHHHHh----C-CCCCC-HHHH---HHHHHHHHHhCChhHHHHHHHHHHhcC--CCCchhHH----
Q 036287 259 IVDLLSRVGRPEEAYDFITN----M-KIAPD-HIML---GSLLSACKIHGKLQLGEQIAKRLLDCR--SADSGTYV---- 323 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~----m-~~~p~-~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~---- 323 (488)
+..++.+ ++.+..-... - ...|. ...+ ..|+......|+++.|...+.++..+. +.-...|.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555555 3333222221 1 11222 1222 246667788899999999888887743 21111222
Q ss_pred -HHHHHHhcCCChHHHHHHHHH
Q 036287 324 -LLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 324 -~l~~~~~~~g~~~~a~~~~~~ 344 (488)
.-.......|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 122233467787777766554
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.89 E-value=1.5e+02 Score=29.08 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQRD------NVRP-NEVTIVCVLSACSQLGALELGRWIHSYMG 143 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 143 (488)
-.|++.++-.|++..|+++++.+.-. .+++ ...++--+.-+|.-++++..|.++|..+.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665544210 1122 22344455556666666666666666553
No 456
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.82 E-value=2.9e+02 Score=24.78 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHh-----cCCCCchhHHHHHH----HHhcCCChHHHHHHHHHHHhCCC
Q 036287 301 LQLGEQIAKRLLD-----CRSADSGTYVLLSN----AYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 301 ~~~a~~~~~~~~~-----~~p~~~~~~~~l~~----~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.+.|.+.|+++.+ +.|.+|.-....++ .|--.|+.++|.++-+...+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3667777777655 45666543332222 34568999999999887766544
No 457
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.54 E-value=2e+02 Score=25.01 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH-HHHHHHhcCCChHHHHHHHHHHHh
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV-LLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
....+.++..|...||++.|.++|.-++...+.|....- .=+..+.+.+.-....+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 445677888888888888888888888887766654433 334455566555555466666643
No 458
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=38.29 E-value=14 Score=25.31 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=16.5
Q ss_pred ceEEEecCCcccccccCccCC
Q 036287 464 RKIIVRDRNRFHHFENGTCSC 484 (488)
Q Consensus 464 ~~i~~~d~~~~h~~~~g~csc 484 (488)
+.|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 467788999999999998653
No 459
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.95 E-value=1.6e+02 Score=21.65 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC--CchhHHHHHHHHhcCCCh-HHHHHHHHHH
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA--DSGTYVLLSNAYASSGKW-KEAVQIRAKM 345 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 345 (488)
|...-..+...+...|+++.|.+.+-.+++.++. +...-..|+..+.-.|.- .-+.+..++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566667777888888888888888888776543 456667777777777763 3444544444
No 460
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.93 E-value=1.7e+02 Score=23.26 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhc--CCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 302 QLGEQIAKRLLDC--RSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 302 ~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
+....+|..|... +..-+..|...+..+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456677777664 35555677777888888888888888875
No 461
>PRK12356 glutaminase; Reviewed
Probab=37.60 E-value=2.4e+02 Score=26.55 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=12.8
Q ss_pred CCCCchhhHHHHHHHHHhcCC
Q 036287 13 GLRSNRSTRLKLVELYGKCGE 33 (488)
Q Consensus 13 g~~~~~~~~~~li~~y~~~g~ 33 (488)
|.+|+...+|+++..-...|.
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~ 113 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGK 113 (319)
T ss_pred CCCCCCCCcchHHHhhccCCC
Confidence 667777777776655444443
No 462
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.40 E-value=1.9e+02 Score=22.27 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
..++|..|.+.+...+- ....+.-.-+..+...|+++.|...=.....||...|-++-. .+.|..+++..-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46677777777766653 223333334455667777777744434444577777765543 456666677666666655
Q ss_pred cC
Q 036287 211 QG 212 (488)
Q Consensus 211 ~g 212 (488)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 463
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.24 E-value=90 Score=18.43 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=9.7
Q ss_pred HHHHHHHHHhCChhHHHHH
Q 036287 289 GSLLSACKIHGKLQLGEQI 307 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~a~~~ 307 (488)
-.+...+-..|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444445555666666666
No 464
>PHA02875 ankyrin repeat protein; Provisional
Probab=37.15 E-value=3.3e+02 Score=26.62 Aligned_cols=200 Identities=12% Similarity=0.007 Sum_probs=102.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh--HHHHHHHHHHhcC
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNEVT--IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI--VGGALINMYSRCG 165 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g 165 (488)
..++.|+.+-+ +.+.+.|..|+... ..+.+..++..|+.+-+ +.+.+.|..|+.. ...+.+...++.|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34556766554 44456687776533 34556666777887644 4455566554432 1223455667889
Q ss_pred CHHHHHHHHHhcccCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhccCCHHHHHHH
Q 036287 166 DIDKALQVFEEMKERD----VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF--VGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 166 ~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~ 239 (488)
+.+.+..+++.-...+ ...+ +.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-...+
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9998888887543211 1112 223334455655 455556666766654221 1233344456777666655
Q ss_pred HHhcccccCcccC---hhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH---HHHHHHHHHHhCChhHHHHHHH
Q 036287 240 FQSMTRDYGIEPQ---IEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIM---LGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 240 ~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
++. |..++ ..-.+. +...+..|+.+-+.-+++ .+..|+... ..+++......|+.+.+.-+++
T Consensus 155 l~~-----g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 155 IDH-----KACLDIEDCCGCTP-LIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred Hhc-----CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 543 33222 222222 233445677665544444 343443221 2244554456677665554444
No 465
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=36.89 E-value=6.3e+02 Score=28.10 Aligned_cols=149 Identities=11% Similarity=0.026 Sum_probs=81.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc---CcccCh--------hhHHHHHHHHH
Q 036287 196 GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY---GIEPQI--------EHYGCIVDLLS 264 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~--------~~~~~li~~~~ 264 (488)
|..---.++|++..+. +|-.+...+.-..+..|.++-+.+....+.+.+ ....+. .+|-.-+.++.
T Consensus 670 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333344455544432 233344444444567788887777766665321 111111 12223355566
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc---hhHHHHHHHHhcCCChHHHHHH
Q 036287 265 RVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS---GTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 265 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
....++++.+.+...+...-...+..++.-+..+++.+.-..+.+.+....++.. .....-+.+|.-..+|++|-++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (932)
T PRK13184 747 NKEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKL 826 (932)
T ss_pred ccccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHH
Confidence 6667777777666653211133444455555666777776666666665443321 2333557788888999999998
Q ss_pred HHHHHh
Q 036287 342 RAKMKE 347 (488)
Q Consensus 342 ~~~m~~ 347 (488)
+.....
T Consensus 827 ~~~~~~ 832 (932)
T PRK13184 827 LNRYPL 832 (932)
T ss_pred HHhCCh
Confidence 865543
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.80 E-value=2.6e+02 Score=26.00 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHH
Q 036287 181 DVTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 181 ~~~~~~~li~~~~~~g~~~~A~ 202 (488)
|+..|..+..+|...|+...+.
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHH
Confidence 5666666666666666555544
No 467
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.73 E-value=3.8e+02 Score=25.17 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh----------cCChHH
Q 036287 202 VEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR----------VGRPEE 271 (488)
Q Consensus 202 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 271 (488)
.++|+.|.+.++.|.-..|..+.-.+++.=.+.....+|+.+..+ ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 456677777777777777777776677777777777777777642 1224444444332 466666
Q ss_pred HHHHHHhC
Q 036287 272 AYDFITNM 279 (488)
Q Consensus 272 A~~~~~~m 279 (488)
-.++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 66666554
No 468
>PRK00971 glutaminase; Provisional
Probab=35.71 E-value=3.8e+02 Score=25.19 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=12.3
Q ss_pred CCCCchhhHHHHHHHHHhcC
Q 036287 13 GLRSNRSTRLKLVELYGKCG 32 (488)
Q Consensus 13 g~~~~~~~~~~li~~y~~~g 32 (488)
|.+|+...+|+++..=...|
T Consensus 88 G~EPSG~~FNSi~~Le~~~g 107 (307)
T PRK00971 88 GKEPSGDPFNSLVQLELEQG 107 (307)
T ss_pred CCCCCCCCCcchhhhhccCC
Confidence 67777777777665433333
No 469
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=35.03 E-value=5.5e+02 Score=26.86 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=28.1
Q ss_pred HcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 62 EHGLVENAFEVFSRVKVK--DTVCWTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 62 ~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
+.=+.++-.++++++... ....|+.++++....|-.....-+.+.+..
T Consensus 357 r~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~ 406 (618)
T PF01347_consen 357 RTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKS 406 (618)
T ss_dssp TTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 334456666666666554 566777788887777766655555444444
No 470
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.95 E-value=4.4e+02 Score=25.77 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=44.2
Q ss_pred eHHHHHHHHHHcCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 52 ASTVMINCYVEHGLVENAFEVFSRVKV------KDTVCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
...-+..-|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|......-.+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 455667778999999999999998652 12346777787878888888888777776653
No 471
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.68 E-value=1.3e+02 Score=20.63 Aligned_cols=49 Identities=4% Similarity=0.025 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036287 78 VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS 127 (488)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 127 (488)
.+....++.++..+++..-.++++..+.++.+.|. .+..+|.--.+.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34555667777777777777777777777777763 45555554444443
No 472
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.01 E-value=1e+02 Score=23.63 Aligned_cols=22 Identities=14% Similarity=0.469 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 036287 86 AMIDGLVRNGEMARALDLFREM 107 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m 107 (488)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666665554
No 473
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.92 E-value=4.4e+02 Score=25.44 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHhccCCHHHHHHHHHhcccccCccc--ChhhHHHHHHHHH-hcCChHHHHHHHHhC
Q 036287 225 NACSHGGLVDLGFEIFQSMTRDYGIEP--QIEHYGCIVDLLS-RVGRPEEAYDFITNM 279 (488)
Q Consensus 225 ~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~m 279 (488)
..+.+.|-+..|.++.+-+. .+.| |+.....+||.|+ ++++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 44556666777777666665 3333 3444445566665 556666556655554
No 474
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=33.52 E-value=1.7e+02 Score=21.42 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=20.3
Q ss_pred hcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHH
Q 036287 30 KCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENA 69 (488)
Q Consensus 30 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A 69 (488)
+....++|..+++.++.++ ..+|.++.+++-..|...-|
T Consensus 40 ~~t~~~qa~~Lld~L~trG-~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 40 KATQKEKAVMLINMILTKD-NHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred CCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCChHHH
Confidence 3444555555555555555 55555555555544443333
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.16 E-value=1.1e+02 Score=23.57 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=35.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
.++..+...+..-.|.++++++.+.+..++..|....|+.+...|.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555556666778888888888887777888888888887777754
No 476
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=33.01 E-value=4.4e+02 Score=25.14 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLG 236 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 236 (488)
+.+.+++.++.+.+..+-+.+..-......++..++-...-.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 036287 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLS 293 (488)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 293 (488)
...+..+.......-.......-.....-..+.+-+..+++++-..+|...|+.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 477
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.60 E-value=5.3e+02 Score=25.96 Aligned_cols=145 Identities=16% Similarity=0.186 Sum_probs=87.2
Q ss_pred HHHHHHHHhhcCCCC--HH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC--HH-----HHHHHHH-HH
Q 036287 66 VENAFEVFSRVKVKD--TV--------CWTAMIDGLVRNGEMARALDLFREMQRD-NVRPN--EV-----TIVCVLS-AC 126 (488)
Q Consensus 66 ~~~A~~~f~~~~~~~--~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--~~-----t~~~ll~-~~ 126 (488)
.|+|+...++.++.| .. ....++.+-.-.|++.+|++-...|.+. .-.|. .. ....++. -|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 455555566666544 11 2233344455679999999999888762 11233 11 1222333 34
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHH--------HHHH--HHh
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNHI--VGGALINMYSRCGDIDKALQVFEEMKERDVTTYNS--------LIAG--LAM 194 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~--------li~~--~~~ 194 (488)
...+.++.|+.-|....+.--..|.. ....+.-.|.+.|+.+.-.++++.+..+|..++.+ .+.+ ...
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55677888888777776543333332 33456778899999998888888887664332221 1111 235
Q ss_pred cCChhHHHHHHHHHHH
Q 036287 195 HGRSIEAVEMFREMIN 210 (488)
Q Consensus 195 ~g~~~~A~~l~~~m~~ 210 (488)
.+++.||...+++-.+
T Consensus 458 qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLK 473 (629)
T ss_pred hccHHHHHHHHHHHHh
Confidence 6788888888887665
No 478
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=32.54 E-value=2.1e+02 Score=21.27 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=25.3
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHcCccCCCcccc
Q 036287 372 DIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVL 405 (488)
Q Consensus 372 ~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 405 (488)
...||.....-...+++.....+.|+.|....-+
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl 90 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKL 90 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhc
Confidence 4568888777777777777778889999765433
No 479
>PF15469 Sec5: Exocyst complex component Sec5
Probab=32.38 E-value=3.1e+02 Score=23.23 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=12.2
Q ss_pred HHHHHhccCCHHHHHHHHHhcc
Q 036287 223 VLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
-|.-|...|+++.+...|..+.
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHH
Confidence 3444555566666666555544
No 480
>PRK10941 hypothetical protein; Provisional
Probab=32.36 E-value=3.7e+02 Score=24.73 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=10.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 036287 188 LIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
+-.+|.+.++++.|+...+.+..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~ 209 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQ 209 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 481
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=32.20 E-value=2.6e+02 Score=22.25 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHHhCChhHHHHHH
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLG-SLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~ 308 (488)
..+..++..++.-.|..++|.+++...+-.++-...| .++..|....+.++..++-
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q 122 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQ 122 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4445556666666677777777666665444433333 3555555555554444433
No 482
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.71 E-value=2.3e+02 Score=29.39 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=11.7
Q ss_pred chhhHHHHHHHHHhcCChH
Q 036287 17 NRSTRLKLVELYGKCGEFK 35 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~ 35 (488)
|.-+...+.+.+.++|-++
T Consensus 326 ~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 326 DWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp HHHHHHHHHHHHHHTTSS-
T ss_pred chhHHHHHHHHHHhcCccc
Confidence 4445566777777777666
No 483
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=31.28 E-value=82 Score=29.24 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=8.6
Q ss_pred CCcchhhHHHhhhcC
Q 036287 449 NDCHSMIKLIANITK 463 (488)
Q Consensus 449 ~~~~~~~~~~s~~~~ 463 (488)
||..-+.+||-+-+.
T Consensus 419 GD~RPFvRfiAkctE 433 (472)
T KOG3824|consen 419 GDLRPFVRFIAKCTE 433 (472)
T ss_pred ccchHHHHHHHhhhH
Confidence 566666666655443
No 484
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.11 E-value=1.1e+03 Score=29.17 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC--C-HHHHHHHHHHHHHcCCH
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVK--D-TVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~ 97 (488)
+-.|...|+..++++...-+...-.. ..+...-|......|++++|...|+.+... + ...++-++..-...|.+
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l 1499 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFA---DPSLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHL 1499 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhc---CccHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccch
Confidence 44445577777777776665542111 223344556677889999999999998843 3 55788777777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCchHHHHHHHH
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCV-LSACSQLGALELGRWIHS 140 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~ 140 (488)
..++-..+-.... ..+....++++ ..+.-+.++++.....+.
T Consensus 1500 ~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1500 STEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred hHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8877765555443 23333344433 334456777777777665
No 485
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.08 E-value=5.4e+02 Score=25.58 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEE
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHE 367 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~ 367 (488)
...|+.-|...|++.+|.+..+++---.-....++.+++.+.-+.|+-...+.+++..-+.|+.. ++.+...
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT--------~nQMtkG 583 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLIT--------TNQMTKG 583 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCcee--------HHHhhhh
Confidence 45678889999999999888776532222345678888888888888777788887777766631 1222222
Q ss_pred EEeCCCCC----ccHHHHHHHHHHHHHHHHHcCc
Q 036287 368 FILGDIRH----PQREQIYKKMQELKQIVKLEGY 397 (488)
Q Consensus 368 ~~~~~~~~----~~~~~~~~~l~~l~~~m~~~g~ 397 (488)
|-.-+.+- -..-.++++++...+.-.+.|+
T Consensus 584 f~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~ 617 (645)
T KOG0403|consen 584 FERVYDSLPDLSLDVPNAYEKFERYVEECFQNGI 617 (645)
T ss_pred hhhhhccCcccccCCCcHHHHHHHHHHHHHHcCc
Confidence 21111111 1223356666777777776673
No 486
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=30.93 E-value=1.7e+02 Score=21.33 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=20.4
Q ss_pred hcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHH
Q 036287 30 KCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENA 69 (488)
Q Consensus 30 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A 69 (488)
..|..+.|..+++.+. +. ...+..++.++..+|.-.-|
T Consensus 44 ~~G~~~aa~~Ll~~L~-r~-~~Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 44 NSGNIKAAWTLLDTLV-RR-DNWLEPFLDALRECGLGHLA 81 (84)
T ss_pred cCChHHHHHHHHHHHh-cc-CChHHHHHHHHHHcCCHHHH
Confidence 3455555666665555 33 45555555555555544433
No 487
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=30.92 E-value=5.3e+02 Score=25.45 Aligned_cols=235 Identities=10% Similarity=-0.041 Sum_probs=127.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036287 24 LVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALD 102 (488)
Q Consensus 24 li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 102 (488)
-++++...| +.|...+-.... .++...+.....++....+......+.+.+..++.......+.++...+...-...
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~ 121 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW 121 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH
Confidence 366666667 456665544442 22233333333333333333335566666666677677778888877776555444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH
Q 036287 103 LFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV 182 (488)
Q Consensus 103 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 182 (488)
+..+.+. ++.......+.++...+. + ....+..+.+ .++..+-..-+.+....|..+..-.+-.-....|.
T Consensus 122 -L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~ 192 (410)
T TIGR02270 122 -LEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDSDP 192 (410)
T ss_pred -HHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCH
Confidence 4444432 344555566666665442 1 2223333333 45666666667777777665444444444455677
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 262 (488)
..-..-+.+....|. .+|.......... |+......+.......| .+++...+..+.++ +. +-...+.+
T Consensus 193 ~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d----~~--vr~~a~~A 261 (410)
T TIGR02270 193 EVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA----AA--TRREALRA 261 (410)
T ss_pred HHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhCC-chhHHHHHHHHhcC----hh--hHHHHHHH
Confidence 777777777777777 6666666653332 22223222333332223 33555555555542 22 45566777
Q ss_pred HHhcCChHHHHHHHHhCC
Q 036287 263 LSRVGRPEEAYDFITNMK 280 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m~ 280 (488)
+++.|+...+.-+++.|.
T Consensus 262 lG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 262 VGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHcCCcchHHHHHHHhc
Confidence 778887777766666664
No 488
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.48 E-value=1.3e+02 Score=23.17 Aligned_cols=46 Identities=11% Similarity=0.238 Sum_probs=32.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGAL 132 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 132 (488)
++..+...+..-.|.++++++.+.+..++..|....|..+.+.|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555556666777888888888777667777777777776666643
No 489
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.41 E-value=2.8e+02 Score=21.99 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036287 134 LGRWIHSYMGKHRIDLN-HIVGGALINMYSRCGDIDKALQVFEE 176 (488)
Q Consensus 134 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~ 176 (488)
.+.++|..|...|+... ...|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888887775443 45567777778888888888888764
No 490
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.26 E-value=3e+02 Score=22.35 Aligned_cols=32 Identities=9% Similarity=-0.029 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 289 GSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
.-|.-++.+.++++.+.++.+.+++.+|+|..
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 34556788899999999999999999988753
No 491
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=29.79 E-value=5.6e+02 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=13.8
Q ss_pred ccHHHHHHHHHHHHHHHHHcCccCCCccc
Q 036287 376 PQREQIYKKMQELKQIVKLEGYSPSTEVV 404 (488)
Q Consensus 376 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 404 (488)
|....+-.+|.+ ...++.|++.++
T Consensus 336 Pd~~~~~aww~~-----~~~~f~~~~Ry~ 359 (410)
T TIGR02270 336 PDAERVAAWWAE-----NAPRFKPGVRYL 359 (410)
T ss_pred CCHHHHHHHHHH-----hcccCCCccccc
Confidence 666666555544 234677777654
No 492
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.73 E-value=91 Score=27.72 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=49.8
Q ss_pred HHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 295 CKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 295 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
..+.++.+.+.+++.+++++-|.....|..+...--++|+++.|.+.+++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3567889999999999999999999999999999999999999999999987754
No 493
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=29.44 E-value=1e+02 Score=28.62 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=31.9
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 264 SRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
.+.|+.++|..+|+.. .+.|+ +.....+......++++-+|.+++-+++...|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3556666666666654 44443 3344444444444556666666666666666665543
No 494
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=29.35 E-value=4.7e+02 Score=25.75 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHH
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMI 57 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li 57 (488)
.+|.++.+..+.||.+++.-+..+|.+.=-++-|-++++-....++...+.+.+
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~l 513 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTAL 513 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHH
Confidence 578889999999999999999999999999999999887655544344444333
No 495
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.24 E-value=6.5e+02 Score=25.95 Aligned_cols=77 Identities=12% Similarity=0.057 Sum_probs=46.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCchHHHHHHHHHHHHc---CCCCcHhHHHHHHHHHHh
Q 036287 88 IDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS-QLGALELGRWIHSYMGKH---RIDLNHIVGGALINMYSR 163 (488)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~ 163 (488)
|....+.|.+..|++.-+-+.+....-|+.....+|..|+ +..+++-.+++++..... ..-|+...-.+|+..|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4556778888888888888777654446777777777764 344566556655555332 234444444444444444
Q ss_pred c
Q 036287 164 C 164 (488)
Q Consensus 164 ~ 164 (488)
.
T Consensus 429 ~ 429 (665)
T KOG2422|consen 429 K 429 (665)
T ss_pred c
Confidence 3
No 496
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.12 E-value=3.7e+02 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=21.9
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
.+..|.+.|.+++|.+++++..+ +|++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 44568899999999999999887 55553
No 497
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.81 E-value=1e+02 Score=24.00 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 186 NSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 186 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
.+++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 456667777777888999999999988888888888888887777653
No 498
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=28.72 E-value=2.6e+02 Score=24.56 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=48.2
Q ss_pred ChHHHHHHHHhCC-----CCC-----CHHHHHHHHHHHHHhC---------ChhHHHHHHHHHHhcC--CCCchhHHHHH
Q 036287 268 RPEEAYDFITNMK-----IAP-----DHIMLGSLLSACKIHG---------KLQLGEQIAKRLLDCR--SADSGTYVLLS 326 (488)
Q Consensus 268 ~~~~A~~~~~~m~-----~~p-----~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~~~~~--p~~~~~~~~l~ 326 (488)
..+.|..+++.|+ +-| ...-|..+..+|.++| +.+.-..+++..++.+ .--|..|.+++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 3567777777773 111 3556777888888776 3445555666666544 22345677776
Q ss_pred HHHhcCCChHHHHHHHHHHH
Q 036287 327 NAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~ 346 (488)
+--.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 65555556777777776654
No 499
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=28.63 E-value=3.5e+02 Score=27.39 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
++..|-..+.-|...+++++|.++.+..+ +...|.++......+.+..-++..|..+.+.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~i 631 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQI 631 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhch
Confidence 45567777788888999999999888765 5678888888888888877777776666553
No 500
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.21 E-value=1.1e+02 Score=21.53 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=28.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036287 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG 130 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 130 (488)
....|+.+.+.+++++..+.|.+|.......+..+....|
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456888888888888888887777766666666554444
Done!