Query 036287
Match_columns 488
No_of_seqs 691 out of 3430
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 19:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.6E-32 2.2E-36 278.5 39.1 342 2-348 103-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.9E-32 1.3E-36 280.2 23.4 374 15-401 81-514 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.4E-29 4.8E-34 252.5 23.0 182 83-265 28-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.8E-28 1.3E-32 242.2 22.0 200 98-298 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 9E-26 3.1E-30 219.9 36.8 340 2-348 18-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.6E-24 5.4E-29 211.1 33.8 325 4-334 54-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 5.4E-24 1.9E-28 211.3 32.7 323 15-345 23-406 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 3.2E-22 1.1E-26 198.5 31.0 295 48-348 24-358 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.5E-22 8.6E-27 202.6 28.7 340 2-348 25-478 (514)
10 2gw1_A Mitochondrial precursor 99.9 8.2E-21 2.8E-25 191.4 27.4 327 18-348 6-444 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 8.2E-20 2.8E-24 174.9 33.0 305 17-329 2-350 (359)
12 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.6E-24 172.8 34.3 294 50-348 3-335 (359)
13 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.7E-24 184.5 32.2 340 2-349 44-492 (537)
14 3hym_B Cell division cycle pro 99.8 9.7E-19 3.3E-23 165.5 29.4 284 50-336 22-322 (330)
15 3hym_B Cell division cycle pro 99.8 4E-18 1.4E-22 161.2 29.3 286 13-302 17-322 (330)
16 1fch_A Peroxisomal targeting s 99.8 4.7E-19 1.6E-23 170.6 22.7 281 60-344 35-355 (368)
17 3fp2_A TPR repeat-containing p 99.8 2.3E-18 8E-23 174.6 27.2 323 18-349 25-408 (537)
18 4eqf_A PEX5-related protein; a 99.8 3.8E-18 1.3E-22 164.3 21.7 261 80-344 64-352 (365)
19 1b89_A Protein (clathrin heavy 99.8 1.4E-19 4.6E-24 172.8 10.7 282 29-341 14-304 (449)
20 1fch_A Peroxisomal targeting s 99.8 9.9E-18 3.4E-22 161.3 22.9 281 27-313 34-358 (368)
21 4eqf_A PEX5-related protein; a 99.8 7.5E-18 2.6E-22 162.3 20.3 259 49-312 64-354 (365)
22 1b89_A Protein (clathrin heavy 99.8 3.2E-19 1.1E-23 170.3 10.4 260 61-352 14-274 (449)
23 3mkr_A Coatomer subunit epsilo 99.8 3.7E-16 1.3E-20 145.3 29.2 268 59-340 8-286 (291)
24 3cv0_A Peroxisome targeting si 99.8 4.7E-17 1.6E-21 153.6 22.2 273 50-345 21-312 (327)
25 2xm6_A Protein corresponding t 99.8 4.5E-15 1.5E-19 148.9 37.8 318 17-349 74-433 (490)
26 4g1t_A Interferon-induced prot 99.8 1.3E-16 4.6E-21 159.0 25.7 336 17-358 50-469 (472)
27 3cv0_A Peroxisome targeting si 99.7 1.3E-16 4.3E-21 150.6 22.3 258 17-313 20-314 (327)
28 2xm6_A Protein corresponding t 99.7 1.3E-14 4.4E-19 145.5 37.3 320 16-350 37-398 (490)
29 3mkr_A Coatomer subunit epsilo 99.7 2.1E-16 7E-21 147.0 22.2 246 88-348 6-264 (291)
30 2ooe_A Cleavage stimulation fa 99.7 1.1E-14 3.9E-19 147.4 33.2 339 6-349 2-455 (530)
31 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.9E-22 170.5 8.7 147 50-196 127-286 (1134)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.9E-22 170.5 8.3 125 148-273 124-256 (1134)
33 2ooe_A Cleavage stimulation fa 99.7 1.2E-13 4.2E-18 139.8 33.8 340 2-348 31-492 (530)
34 3uq3_A Heat shock protein STI1 99.7 9.4E-15 3.2E-19 132.7 22.5 227 82-348 6-236 (258)
35 3uq3_A Heat shock protein STI1 99.7 4.4E-15 1.5E-19 134.9 19.3 231 50-325 5-253 (258)
36 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-14 3.8E-19 133.7 19.8 240 94-342 18-269 (275)
37 2pl2_A Hypothetical conserved 99.6 1.9E-14 6.3E-19 127.7 19.8 194 148-345 2-211 (217)
38 3u4t_A TPR repeat-containing p 99.6 3.3E-14 1.1E-18 130.4 20.6 253 51-332 4-268 (272)
39 1xi4_A Clathrin heavy chain; a 99.6 7.1E-13 2.4E-17 140.8 32.0 286 22-343 1053-1340(1630)
40 2pl2_A Hypothetical conserved 99.6 7.8E-14 2.7E-18 123.7 20.0 192 80-278 4-210 (217)
41 2h6f_A Protein farnesyltransfe 99.6 1.2E-13 4.2E-18 132.8 22.2 244 81-330 97-364 (382)
42 1ouv_A Conserved hypothetical 99.6 9.6E-13 3.3E-17 121.0 27.2 225 80-318 5-255 (273)
43 1xi4_A Clathrin heavy chain; a 99.6 2.4E-12 8.3E-17 136.8 32.5 280 30-340 1088-1376(1630)
44 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.5E-14 2.9E-18 127.7 19.4 237 63-308 18-269 (275)
45 3e4b_A ALGK; tetratricopeptide 99.6 5.9E-14 2E-18 138.9 18.9 312 23-350 8-353 (452)
46 4g1t_A Interferon-induced prot 99.6 1.8E-13 6.2E-18 136.2 22.5 303 17-325 93-470 (472)
47 3u4t_A TPR repeat-containing p 99.6 5.4E-13 1.9E-17 122.3 24.0 225 18-245 3-249 (272)
48 2q7f_A YRRB protein; TPR, prot 99.6 9.5E-14 3.3E-18 124.9 18.0 213 80-328 22-236 (243)
49 2ho1_A Type 4 fimbrial biogene 99.6 5.5E-13 1.9E-17 120.8 23.1 205 81-320 37-244 (252)
50 2vq2_A PILW, putative fimbrial 99.6 6.5E-13 2.2E-17 117.7 22.7 195 151-347 8-210 (225)
51 2ho1_A Type 4 fimbrial biogene 99.6 4.6E-13 1.6E-17 121.3 22.0 197 151-349 37-239 (252)
52 3sf4_A G-protein-signaling mod 99.6 3.1E-13 1.1E-17 131.3 21.6 267 80-347 8-335 (406)
53 1ouv_A Conserved hypothetical 99.6 3.3E-12 1.1E-16 117.3 27.1 224 115-350 5-253 (273)
54 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.7E-17 116.3 23.0 209 80-323 7-220 (225)
55 4a1s_A PINS, partner of inscut 99.6 1.1E-13 3.7E-18 135.2 18.0 265 83-348 50-372 (411)
56 3ro2_A PINS homolog, G-protein 99.5 1.8E-13 6E-18 129.1 17.6 265 83-348 7-332 (338)
57 2q7f_A YRRB protein; TPR, prot 99.5 2.3E-13 7.7E-18 122.4 17.5 196 150-348 22-222 (243)
58 2h6f_A Protein farnesyltransfe 99.5 2.9E-12 9.9E-17 123.2 23.6 242 49-296 96-364 (382)
59 3sf4_A G-protein-signaling mod 99.5 2.4E-13 8.3E-18 132.1 16.3 154 183-336 188-364 (406)
60 3e4b_A ALGK; tetratricopeptide 99.5 2.8E-12 9.6E-17 126.9 21.8 327 2-351 22-390 (452)
61 4a1s_A PINS, partner of inscut 99.5 8.2E-13 2.8E-17 128.9 17.4 265 52-316 50-374 (411)
62 2ond_A Cleavage stimulation fa 99.5 2.9E-11 9.9E-16 113.2 27.2 218 98-319 33-275 (308)
63 4abn_A Tetratricopeptide repea 99.5 4.9E-13 1.7E-17 133.2 15.3 208 132-345 84-318 (474)
64 3ro2_A PINS homolog, G-protein 99.5 2.9E-12 9.8E-17 120.7 18.9 133 184-316 185-334 (338)
65 3vtx_A MAMA; tetratricopeptide 99.5 7.8E-12 2.7E-16 107.4 19.6 165 181-348 4-170 (184)
66 3ulq_A Response regulator aspa 99.4 4.7E-12 1.6E-16 122.5 18.6 158 87-244 109-291 (383)
67 2ond_A Cleavage stimulation fa 99.4 5.1E-11 1.7E-15 111.5 24.6 210 67-279 33-267 (308)
68 3ulq_A Response regulator aspa 99.4 1.3E-11 4.3E-16 119.5 21.0 225 122-347 109-367 (383)
69 3vtx_A MAMA; tetratricopeptide 99.4 1.9E-11 6.5E-16 104.9 19.8 159 50-210 5-169 (184)
70 3nf1_A KLC 1, kinesin light ch 99.4 9E-13 3.1E-17 123.1 11.1 243 80-347 26-306 (311)
71 3nf1_A KLC 1, kinesin light ch 99.4 2.2E-12 7.6E-17 120.4 13.6 247 49-317 26-310 (311)
72 1hz4_A MALT regulatory protein 99.4 5.9E-10 2E-14 107.1 28.0 262 86-347 19-321 (373)
73 3q15_A PSP28, response regulat 99.3 2.5E-10 8.4E-15 110.2 24.7 301 13-313 5-364 (378)
74 4abn_A Tetratricopeptide repea 99.3 2.3E-11 7.9E-16 121.1 17.2 207 65-279 83-318 (474)
75 4gyw_A UDP-N-acetylglucosamine 99.3 1.9E-11 6.4E-16 126.9 17.1 160 183-347 10-173 (723)
76 3as5_A MAMA; tetratricopeptide 99.3 6.3E-11 2.2E-15 101.1 16.4 160 152-348 9-173 (186)
77 3as5_A MAMA; tetratricopeptide 99.3 6.4E-10 2.2E-14 94.7 21.0 156 53-210 11-172 (186)
78 4i17_A Hypothetical protein; T 99.3 3.8E-10 1.3E-14 100.4 19.1 205 113-329 4-224 (228)
79 1hz4_A MALT regulatory protein 99.3 1.5E-09 5.3E-14 104.2 24.8 233 83-315 55-323 (373)
80 3q15_A PSP28, response regulat 99.3 2.7E-10 9.1E-15 109.9 19.3 286 61-347 23-364 (378)
81 4gyw_A UDP-N-acetylglucosamine 99.2 3.7E-10 1.3E-14 117.2 18.4 159 50-210 9-173 (723)
82 4i17_A Hypothetical protein; T 99.2 4.8E-10 1.7E-14 99.7 16.3 188 149-348 5-209 (228)
83 4e6h_A MRNA 3'-END-processing 99.2 4E-08 1.4E-12 100.9 31.2 344 5-350 54-535 (679)
84 3edt_B KLC 2, kinesin light ch 99.2 2.1E-10 7.3E-15 105.0 13.0 152 93-244 13-196 (283)
85 1qqe_A Vesicular transport pro 99.1 1.1E-09 3.7E-14 101.6 16.7 169 65-244 32-226 (292)
86 3edt_B KLC 2, kinesin light ch 99.1 1.3E-09 4.3E-14 99.8 15.8 143 68-210 26-197 (283)
87 4e6h_A MRNA 3'-END-processing 99.1 1E-07 3.5E-12 97.9 31.0 343 2-349 85-571 (679)
88 3mv2_B Coatomer subunit epsilo 99.1 1.7E-08 5.7E-13 92.5 22.0 173 170-347 85-281 (310)
89 1qqe_A Vesicular transport pro 99.1 1.1E-08 3.7E-13 94.8 20.6 212 96-322 32-277 (292)
90 3mv2_B Coatomer subunit epsilo 99.1 1.2E-08 4.3E-13 93.3 19.1 78 100-178 85-163 (310)
91 3qky_A Outer membrane assembly 99.1 8.3E-09 2.8E-13 93.8 18.0 205 149-394 13-247 (261)
92 2fo7_A Synthetic consensus TPR 99.0 1.6E-08 5.3E-13 80.9 16.9 126 83-210 3-131 (136)
93 3qou_A Protein YBBN; thioredox 99.0 2.3E-08 7.9E-13 92.3 19.0 176 167-346 102-282 (287)
94 3qky_A Outer membrane assembly 99.0 9.9E-09 3.4E-13 93.3 16.1 186 113-320 12-230 (261)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.4E-08 1.5E-12 86.8 18.9 180 151-350 4-215 (225)
96 4ga2_A E3 SUMO-protein ligase 99.0 5.9E-10 2E-14 92.2 6.2 110 222-334 36-149 (150)
97 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.8E-13 81.7 13.7 130 184-348 3-132 (136)
98 2pzi_A Probable serine/threoni 99.0 3.3E-09 1.1E-13 110.4 12.7 168 162-334 402-583 (681)
99 2pzi_A Probable serine/threoni 98.9 6.7E-08 2.3E-12 100.5 20.4 166 92-264 402-579 (681)
100 3urz_A Uncharacterized protein 98.9 4.7E-08 1.6E-12 85.5 16.5 185 83-292 6-197 (208)
101 2ifu_A Gamma-SNAP; membrane fu 98.9 2.6E-08 8.7E-13 93.0 15.5 219 94-340 4-253 (307)
102 3urz_A Uncharacterized protein 98.9 5.3E-08 1.8E-12 85.1 16.4 130 87-220 60-193 (208)
103 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.4E-12 82.4 18.8 161 181-350 17-199 (212)
104 2r5s_A Uncharacterized protein 98.9 6.4E-08 2.2E-12 82.1 15.8 154 53-209 9-171 (176)
105 2r5s_A Uncharacterized protein 98.9 4.1E-08 1.4E-12 83.3 14.0 77 271-347 92-172 (176)
106 3rjv_A Putative SEL1 repeat pr 98.8 4.3E-08 1.5E-12 86.0 13.6 124 80-210 17-157 (212)
107 3qou_A Protein YBBN; thioredox 98.8 1.9E-07 6.4E-12 86.2 18.4 162 114-277 115-279 (287)
108 4ga2_A E3 SUMO-protein ligase 98.8 1.6E-08 5.3E-13 83.5 9.9 138 26-165 5-148 (150)
109 2vsy_A XCC0866; transferase, g 98.8 4.9E-08 1.7E-12 99.5 15.2 159 164-326 2-169 (568)
110 2vsy_A XCC0866; transferase, g 98.8 9.2E-08 3.1E-12 97.4 16.2 147 129-279 2-154 (568)
111 3gyz_A Chaperone protein IPGC; 98.8 4.3E-08 1.5E-12 80.7 10.8 102 248-349 30-134 (151)
112 3dra_A Protein farnesyltransfe 98.8 6E-06 2.1E-10 76.1 26.2 228 93-325 45-299 (306)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.3E-07 7.9E-12 82.1 16.1 184 115-319 3-218 (225)
114 2qfc_A PLCR protein; TPR, HTH, 98.7 7.6E-07 2.6E-11 82.2 18.6 165 183-347 76-265 (293)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.1E-07 2.4E-11 77.9 17.2 141 54-211 10-150 (213)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.8E-07 1.6E-11 79.0 15.9 125 220-349 9-151 (213)
117 3u3w_A Transcriptional activat 98.7 4.3E-06 1.5E-10 77.1 23.0 160 188-347 81-265 (293)
118 3dra_A Protein farnesyltransfe 98.7 5E-06 1.7E-10 76.6 22.8 212 132-347 49-286 (306)
119 2ifu_A Gamma-SNAP; membrane fu 98.7 4.9E-07 1.7E-11 84.2 16.2 170 63-244 29-222 (307)
120 4gco_A Protein STI-1; structur 98.7 2.1E-07 7.2E-12 74.0 11.2 99 249-347 8-109 (126)
121 3u3w_A Transcriptional activat 98.6 1.7E-06 5.7E-11 79.9 18.6 122 123-244 122-264 (293)
122 2vgx_A Chaperone SYCD; alterna 98.6 1.3E-07 4.5E-12 77.6 9.6 97 252-348 20-118 (148)
123 2c2l_A CHIP, carboxy terminus 98.6 1E-07 3.5E-12 87.6 9.9 51 298-348 148-199 (281)
124 3gw4_A Uncharacterized protein 98.6 4.1E-07 1.4E-11 78.6 13.2 149 62-210 4-175 (203)
125 2uy1_A Cleavage stimulation fa 98.6 1.5E-05 5.2E-10 79.1 25.2 120 220-346 289-411 (493)
126 4gco_A Protein STI-1; structur 98.6 3.8E-07 1.3E-11 72.5 10.8 107 220-328 16-124 (126)
127 1a17_A Serine/threonine protei 98.6 7.2E-07 2.5E-11 74.2 12.7 123 223-347 19-145 (166)
128 2uy1_A Cleavage stimulation fa 98.6 2.8E-05 9.5E-10 77.2 26.2 320 17-345 14-380 (493)
129 2xcb_A PCRH, regulatory protei 98.6 9.2E-07 3.2E-11 71.9 12.9 100 249-348 13-115 (142)
130 1a17_A Serine/threonine protei 98.6 2.7E-06 9.2E-11 70.6 15.8 126 82-209 14-144 (166)
131 1na0_A Designed protein CTPR3; 98.5 7.7E-07 2.6E-11 69.8 11.5 111 220-332 12-124 (125)
132 3gyz_A Chaperone protein IPGC; 98.5 4.1E-07 1.4E-11 74.8 9.3 121 20-146 11-134 (151)
133 2vyi_A SGTA protein; chaperone 98.5 9.4E-07 3.2E-11 69.9 11.1 114 220-335 15-130 (131)
134 2lni_A Stress-induced-phosphop 98.5 9.6E-07 3.3E-11 70.2 11.1 80 254-333 51-132 (133)
135 3gw4_A Uncharacterized protein 98.5 5.1E-06 1.8E-10 71.5 16.4 26 184-209 68-93 (203)
136 2qfc_A PLCR protein; TPR, HTH, 98.5 5.5E-06 1.9E-10 76.4 17.5 127 82-209 76-223 (293)
137 2c2l_A CHIP, carboxy terminus 98.5 8.7E-07 3E-11 81.3 11.8 49 266-314 148-199 (281)
138 1p5q_A FKBP52, FK506-binding p 98.5 6.4E-07 2.2E-11 84.6 11.2 160 165-346 127-292 (336)
139 3q7a_A Farnesyltransferase alp 98.5 0.00011 3.6E-09 68.6 25.9 180 84-268 57-257 (349)
140 1na0_A Designed protein CTPR3; 98.5 5.8E-06 2E-10 64.6 15.1 94 81-176 9-102 (125)
141 4f3v_A ESX-1 secretion system 98.5 4.8E-06 1.6E-10 75.2 16.0 133 188-325 108-247 (282)
142 2kck_A TPR repeat; tetratricop 98.5 1.6E-06 5.5E-11 66.5 11.2 99 252-350 5-108 (112)
143 4f3v_A ESX-1 secretion system 98.5 4.9E-06 1.7E-10 75.1 15.8 181 163-348 18-237 (282)
144 3upv_A Heat shock protein STI1 98.4 1.7E-06 5.7E-11 68.5 11.1 96 253-348 4-101 (126)
145 2e2e_A Formate-dependent nitri 98.4 4.9E-07 1.7E-11 76.5 8.4 118 229-348 22-144 (177)
146 2vyi_A SGTA protein; chaperone 98.4 6.5E-06 2.2E-10 64.9 14.4 115 81-197 12-129 (131)
147 2lni_A Stress-induced-phosphop 98.4 4.9E-06 1.7E-10 66.0 13.6 97 80-178 15-111 (133)
148 3q49_B STIP1 homology and U bo 98.4 3.7E-06 1.3E-10 67.4 12.0 98 251-348 7-106 (137)
149 2e2e_A Formate-dependent nitri 98.4 3.3E-06 1.1E-10 71.3 11.9 125 194-321 22-151 (177)
150 2fbn_A 70 kDa peptidylprolyl i 98.4 2.4E-07 8.2E-12 80.1 4.4 173 155-348 8-186 (198)
151 1elw_A TPR1-domain of HOP; HOP 98.4 4.6E-06 1.6E-10 64.4 11.5 94 254-347 5-100 (118)
152 3sz7_A HSC70 cochaperone (SGT) 98.4 3.1E-06 1.1E-10 70.5 11.1 97 252-348 10-108 (164)
153 1p5q_A FKBP52, FK506-binding p 98.3 7.8E-06 2.7E-10 77.1 15.0 143 65-208 128-291 (336)
154 1wao_1 Serine/threonine protei 98.3 1.5E-06 5.1E-11 86.2 10.3 116 226-344 15-135 (477)
155 1hxi_A PEX5, peroxisome target 98.3 2E-06 7E-11 67.7 9.1 95 254-348 18-114 (121)
156 3dss_A Geranylgeranyl transfer 98.3 0.0001 3.5E-09 68.4 21.9 229 92-327 40-317 (331)
157 2fbn_A 70 kDa peptidylprolyl i 98.3 1.5E-06 5E-11 75.1 8.9 120 55-176 9-147 (198)
158 1elw_A TPR1-domain of HOP; HOP 98.3 7.8E-06 2.7E-10 63.1 12.1 105 222-328 9-115 (118)
159 2dba_A Smooth muscle cell asso 98.3 1.3E-05 4.3E-10 65.0 13.7 107 220-329 31-143 (148)
160 2dba_A Smooth muscle cell asso 98.3 6.7E-06 2.3E-10 66.6 12.0 97 252-348 27-128 (148)
161 3q7a_A Farnesyltransferase alp 98.3 0.00015 5.1E-09 67.6 21.8 168 60-230 64-255 (349)
162 2vgx_A Chaperone SYCD; alterna 98.3 4.5E-06 1.5E-10 68.3 10.3 93 82-176 22-114 (148)
163 4gcn_A Protein STI-1; structur 98.3 2.6E-06 9.1E-11 67.7 8.3 94 254-347 9-111 (127)
164 1wao_1 Serine/threonine protei 98.3 1.3E-05 4.4E-10 79.4 14.7 117 157-277 12-134 (477)
165 3upv_A Heat shock protein STI1 98.2 2.5E-05 8.6E-10 61.5 13.0 92 82-175 5-96 (126)
166 3sz7_A HSC70 cochaperone (SGT) 98.2 7.7E-06 2.6E-10 68.1 10.2 105 218-325 12-119 (164)
167 4gcn_A Protein STI-1; structur 98.2 2.8E-05 9.7E-10 61.6 13.0 110 82-219 9-118 (127)
168 4b4t_Q 26S proteasome regulato 98.2 4.6E-05 1.6E-09 74.2 16.7 161 119-279 58-242 (434)
169 2xev_A YBGF; tetratricopeptide 98.2 8.7E-06 3E-10 64.4 9.4 92 257-348 6-105 (129)
170 2xcb_A PCRH, regulatory protei 98.2 2.9E-05 9.8E-10 62.8 12.4 94 82-177 19-112 (142)
171 4b4t_Q 26S proteasome regulato 98.1 3.9E-05 1.3E-09 74.7 15.6 163 185-347 58-244 (434)
172 3q49_B STIP1 homology and U bo 98.1 4.9E-05 1.7E-09 60.6 13.6 96 80-177 8-103 (137)
173 2kck_A TPR repeat; tetratricop 98.1 2E-05 6.8E-10 60.1 10.7 61 83-144 8-68 (112)
174 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4.2E-10 63.3 9.5 96 253-348 4-108 (131)
175 1elr_A TPR2A-domain of HOP; HO 98.1 2.9E-05 1E-09 61.0 11.7 62 82-144 5-66 (131)
176 2hr2_A Hypothetical protein; a 98.1 1.3E-05 4.4E-10 65.5 9.2 62 286-347 58-130 (159)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.5E-05 5E-10 78.6 11.0 144 182-347 268-414 (457)
178 3k9i_A BH0479 protein; putativ 98.1 3.6E-06 1.2E-10 65.6 5.4 82 266-347 3-89 (117)
179 3rkv_A Putative peptidylprolyl 98.1 1.6E-05 5.6E-10 65.9 9.6 64 285-348 63-126 (162)
180 1hxi_A PEX5, peroxisome target 98.1 3.5E-05 1.2E-09 60.4 10.9 88 87-176 23-110 (121)
181 3ro3_A PINS homolog, G-protein 98.1 2.9E-05 9.8E-10 63.6 10.7 127 83-209 11-156 (164)
182 3dss_A Geranylgeranyl transfer 98.0 0.00075 2.6E-08 62.6 21.0 218 127-348 40-304 (331)
183 3ro3_A PINS homolog, G-protein 98.0 1.1E-05 3.9E-10 66.1 7.9 93 255-347 51-157 (164)
184 2xev_A YBGF; tetratricopeptide 98.0 5.5E-05 1.9E-09 59.6 10.8 95 226-323 11-114 (129)
185 1ihg_A Cyclophilin 40; ppiase 98.0 3.8E-05 1.3E-09 73.2 11.2 136 183-340 224-362 (370)
186 2if4_A ATFKBP42; FKBP-like, al 97.9 1.9E-05 6.5E-10 74.4 8.0 147 182-348 179-328 (338)
187 3n71_A Histone lysine methyltr 97.9 8.2E-05 2.8E-09 73.4 12.5 124 226-349 318-465 (490)
188 2if4_A ATFKBP42; FKBP-like, al 97.9 2.8E-05 9.7E-10 73.2 8.7 151 151-319 179-333 (338)
189 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00014 4.9E-09 71.5 13.5 120 50-171 268-405 (457)
190 2hr2_A Hypothetical protein; a 97.9 2.9E-05 1E-09 63.3 6.9 115 183-323 12-140 (159)
191 3k9i_A BH0479 protein; putativ 97.8 2.4E-05 8.2E-10 60.9 5.9 91 230-321 3-97 (117)
192 1ihg_A Cyclophilin 40; ppiase 97.8 0.00015 5.1E-09 69.1 12.5 119 52-172 225-362 (370)
193 3ma5_A Tetratricopeptide repea 97.8 0.00013 4.3E-09 54.9 9.0 65 284-348 6-70 (100)
194 1dce_A Protein (RAB geranylger 97.8 0.0012 4.3E-08 66.5 18.7 167 168-337 46-244 (567)
195 2kat_A Uncharacterized protein 97.8 9.1E-05 3.1E-09 57.2 8.2 78 271-348 3-82 (115)
196 3rkv_A Putative peptidylprolyl 97.7 0.00034 1.2E-08 57.7 12.0 112 81-218 11-131 (162)
197 2l6j_A TPR repeat-containing p 97.7 5.5E-05 1.9E-09 57.7 6.5 91 252-342 3-101 (111)
198 1na3_A Designed protein CTPR2; 97.7 0.00013 4.6E-09 53.2 8.4 80 253-332 9-90 (91)
199 2l6j_A TPR repeat-containing p 97.6 6.3E-05 2.2E-09 57.4 5.4 94 81-176 4-103 (111)
200 1klx_A Cysteine rich protein B 97.5 0.0022 7.5E-08 51.3 13.7 110 95-212 9-127 (138)
201 1zu2_A Mitochondrial import re 97.5 7.3E-05 2.5E-09 60.8 4.2 84 265-348 14-120 (158)
202 3n71_A Histone lysine methyltr 97.5 0.00046 1.6E-08 68.0 10.7 87 91-177 319-419 (490)
203 3qwp_A SET and MYND domain-con 97.5 0.0023 7.8E-08 62.0 14.9 116 260-393 294-427 (429)
204 3bee_A Putative YFRE protein; 97.4 0.00094 3.2E-08 49.2 9.1 69 282-350 3-74 (93)
205 1na3_A Designed protein CTPR2; 97.4 0.0018 6.3E-08 46.8 10.7 81 81-163 9-89 (91)
206 3mkq_A Coatomer beta'-subunit; 97.4 0.023 8E-07 59.9 23.2 45 61-107 663-707 (814)
207 1klx_A Cysteine rich protein B 97.3 0.0012 4E-08 52.9 9.4 86 87-178 31-124 (138)
208 2kat_A Uncharacterized protein 97.3 0.002 6.8E-08 49.4 10.4 76 100-177 4-79 (115)
209 1dce_A Protein (RAB geranylger 97.2 0.028 9.7E-07 56.5 19.6 165 66-233 45-242 (567)
210 1zu2_A Mitochondrial import re 97.2 0.0008 2.7E-08 54.7 6.6 108 92-227 13-134 (158)
211 3qww_A SET and MYND domain-con 97.1 0.0016 5.5E-08 63.1 9.4 82 266-347 311-410 (433)
212 3ma5_A Tetratricopeptide repea 97.0 0.0024 8.1E-08 47.7 7.9 60 150-209 6-68 (100)
213 3qwp_A SET and MYND domain-con 97.0 0.0058 2E-07 59.2 12.0 100 224-323 294-414 (429)
214 3mkq_A Coatomer beta'-subunit; 97.0 0.026 8.9E-07 59.5 18.0 97 61-177 610-707 (814)
215 3qww_A SET and MYND domain-con 96.9 0.0045 1.5E-07 59.9 10.8 93 229-321 310-423 (433)
216 3ly7_A Transcriptional activat 96.9 0.025 8.4E-07 52.8 15.0 35 180-216 192-231 (372)
217 1wy6_A Hypothetical protein ST 96.9 0.1 3.4E-06 40.5 17.1 141 192-351 17-157 (172)
218 2kc7_A BFR218_protein; tetratr 96.8 0.0074 2.5E-07 44.5 8.6 64 259-322 6-72 (99)
219 2kc7_A BFR218_protein; tetratr 96.7 0.0043 1.5E-07 45.8 7.0 59 291-349 6-65 (99)
220 3ly7_A Transcriptional activat 96.5 0.16 5.5E-06 47.3 17.2 46 78-125 191-242 (372)
221 1pc2_A Mitochondria fission pr 96.5 0.015 5E-07 46.7 9.0 65 283-347 30-99 (152)
222 3mkq_B Coatomer subunit alpha; 96.4 0.25 8.4E-06 40.7 15.7 101 60-177 15-115 (177)
223 3mkq_B Coatomer subunit alpha; 96.2 0.12 4.1E-06 42.5 13.1 129 159-311 13-141 (177)
224 3bee_A Putative YFRE protein; 96.1 0.043 1.5E-06 40.2 9.0 77 250-327 3-84 (93)
225 3u64_A Protein TP_0956; tetrat 96.0 0.031 1.1E-06 50.0 9.1 87 269-355 179-276 (301)
226 2v5f_A Prolyl 4-hydroxylase su 95.9 0.051 1.7E-06 40.6 8.8 72 253-324 5-85 (104)
227 1qsa_A Protein (soluble lytic 95.7 2 6.7E-05 43.4 25.3 248 55-313 77-347 (618)
228 1pc2_A Mitochondria fission pr 94.9 0.077 2.6E-06 42.5 7.3 71 251-321 30-107 (152)
229 4gns_B Protein CSD3, chitin bi 94.7 0.24 8.1E-06 51.0 11.9 53 293-345 345-397 (754)
230 1nzn_A CGI-135 protein, fissio 94.5 0.19 6.4E-06 38.8 8.1 65 283-347 33-102 (126)
231 2v5f_A Prolyl 4-hydroxylase su 94.4 0.19 6.4E-06 37.4 8.1 64 284-347 4-74 (104)
232 3u64_A Protein TP_0956; tetrat 94.2 0.96 3.3E-05 40.5 13.2 82 133-214 180-272 (301)
233 1wy6_A Hypothetical protein ST 93.9 0.72 2.5E-05 35.8 10.1 86 61-148 72-157 (172)
234 4h7y_A Dual specificity protei 93.5 0.42 1.5E-05 37.9 8.4 110 179-323 10-132 (161)
235 1y8m_A FIS1; mitochondria, unk 92.5 3.2 0.00011 32.6 13.1 66 282-347 36-105 (144)
236 4h7y_A Dual specificity protei 92.2 1.4 4.6E-05 35.0 9.7 55 297-351 72-126 (161)
237 4ady_A RPN2, 26S proteasome re 92.0 7 0.00024 41.2 17.6 248 59-312 383-656 (963)
238 2ff4_A Probable regulatory pro 91.9 0.46 1.6E-05 45.1 8.3 69 288-356 174-247 (388)
239 3lvg_A Clathrin heavy chain 1; 91.6 0.00013 4.6E-09 69.3 -16.0 156 32-201 39-218 (624)
240 1nzn_A CGI-135 protein, fissio 91.4 1 3.6E-05 34.6 8.2 72 251-322 33-111 (126)
241 2uwj_G Type III export protein 89.8 4.4 0.00015 29.4 9.9 61 57-120 46-106 (115)
242 2p58_C Putative type III secre 89.5 4.7 0.00016 29.2 10.3 61 57-120 47-107 (116)
243 4fhn_B Nucleoporin NUP120; pro 89.1 6.3 0.00022 43.2 15.2 163 56-236 818-990 (1139)
244 3lpz_A GET4 (YOR164C homolog); 88.0 16 0.00054 33.4 20.1 180 27-244 21-214 (336)
245 3o48_A Mitochondria fission 1 87.8 3.3 0.00011 32.0 8.5 45 303-347 61-106 (134)
246 3txn_A 26S proteasome regulato 87.2 15 0.00051 34.5 14.5 128 117-244 20-166 (394)
247 4b4t_P 26S proteasome regulato 86.7 19 0.00066 34.5 15.4 185 95-279 30-244 (445)
248 1v54_E Cytochrome C oxidase po 86.5 2 6.7E-05 31.3 6.0 63 197-261 25-87 (109)
249 1v54_E Cytochrome C oxidase po 85.2 5.1 0.00017 29.2 7.6 49 278-326 38-86 (109)
250 4ady_A RPN2, 26S proteasome re 85.2 41 0.0014 35.5 22.0 263 28-295 384-671 (963)
251 3lpz_A GET4 (YOR164C homolog); 85.1 22 0.00077 32.4 21.8 167 154-347 38-215 (336)
252 2ff4_A Probable regulatory pro 85.0 4.6 0.00016 38.1 9.9 69 186-255 175-247 (388)
253 3lvg_A Clathrin heavy chain 1; 84.5 0.005 1.7E-07 58.8 -10.5 234 81-344 54-287 (624)
254 3ffl_A Anaphase-promoting comp 84.1 13 0.00043 30.0 10.5 122 50-184 20-157 (167)
255 4gns_B Protein CSD3, chitin bi 83.8 11 0.00038 38.8 12.6 50 192-243 347-397 (754)
256 4fhn_B Nucleoporin NUP120; pro 82.7 29 0.001 37.9 16.3 166 21-202 815-991 (1139)
257 3ffl_A Anaphase-promoting comp 82.7 4.4 0.00015 32.7 7.3 112 157-282 26-151 (167)
258 2uwj_G Type III export protein 81.2 13 0.00046 26.9 8.9 87 130-221 20-106 (115)
259 2p58_C Putative type III secre 80.2 15 0.0005 26.7 9.5 87 130-221 21-107 (116)
260 3ltm_A Alpha-REP4; protein eng 79.9 25 0.00085 29.2 18.7 78 50-131 33-110 (211)
261 2y69_E Cytochrome C oxidase su 79.7 4.7 0.00016 31.1 6.0 63 197-261 68-130 (152)
262 2wpv_A GET4, UPF0363 protein Y 77.6 41 0.0014 30.4 21.2 179 29-245 24-216 (312)
263 1zbp_A Hypothetical protein VP 77.1 25 0.00085 30.9 10.7 51 193-244 8-58 (273)
264 3ltm_A Alpha-REP4; protein eng 76.6 31 0.0011 28.6 18.4 143 15-166 30-172 (211)
265 2wpv_A GET4, UPF0363 protein Y 76.5 44 0.0015 30.2 22.3 168 153-348 35-217 (312)
266 2y69_E Cytochrome C oxidase su 75.8 14 0.00048 28.5 7.6 54 273-326 76-129 (152)
267 3txn_A 26S proteasome regulato 75.3 54 0.0019 30.7 26.1 89 250-351 253-346 (394)
268 3mv2_A Coatomer subunit alpha; 74.5 44 0.0015 30.2 11.9 56 280-349 200-257 (325)
269 3o48_A Mitochondria fission 1 74.0 27 0.00092 26.9 9.0 66 113-178 37-105 (134)
270 1zbp_A Hypothetical protein VP 71.1 7.4 0.00025 34.2 6.0 57 262-318 6-64 (273)
271 3ltj_A Alpharep-4; protein eng 67.9 49 0.0017 27.1 18.6 17 115-131 89-105 (201)
272 3ltj_A Alpharep-4; protein eng 67.8 49 0.0017 27.0 19.7 153 6-167 16-168 (201)
273 2qx5_A Nucleoporin NIC96; mRNA 67.6 46 0.0016 33.7 11.7 89 261-352 451-568 (661)
274 1y8m_A FIS1; mitochondria, unk 67.1 43 0.0015 26.1 10.4 66 113-178 36-104 (144)
275 4b4t_P 26S proteasome regulato 66.9 90 0.0031 29.8 23.4 195 64-276 30-261 (445)
276 4b4t_R RPN7, 26S proteasome re 66.1 21 0.00073 34.0 8.8 93 254-346 132-235 (429)
277 3esl_A Checkpoint serine/threo 65.7 58 0.002 27.1 10.2 87 286-398 81-169 (202)
278 2l0z_A Glycoprotein G2; zinc-b 65.1 2.1 7.3E-05 24.8 0.9 13 475-487 16-29 (42)
279 1n11_A Ankyrin; clathrin, BAND 64.6 32 0.0011 32.5 9.8 70 5-75 29-102 (437)
280 2ion_A PDCD4, programmed cell 62.5 36 0.0012 27.0 8.0 65 53-117 12-81 (152)
281 4b4t_R RPN7, 26S proteasome re 61.5 33 0.0011 32.6 9.2 96 83-178 133-235 (429)
282 1wdy_A 2-5A-dependent ribonucl 58.1 81 0.0028 27.1 10.8 55 21-76 5-62 (285)
283 2nsz_A Programmed cell death p 56.8 44 0.0015 25.5 7.4 65 154-218 10-79 (129)
284 1n11_A Ankyrin; clathrin, BAND 56.5 1.3E+02 0.0044 28.1 13.4 302 22-352 15-337 (437)
285 1wdy_A 2-5A-dependent ribonucl 53.7 69 0.0024 27.5 9.5 18 292-309 223-240 (285)
286 2d2s_A Exocyst complex compone 52.6 74 0.0025 27.3 8.9 24 86-109 23-46 (235)
287 4gq2_M Nucleoporin NUP120; bet 52.1 1.3E+02 0.0045 32.0 12.6 48 118-165 899-950 (950)
288 2nsz_A Programmed cell death p 51.9 77 0.0026 24.1 10.6 66 53-118 10-80 (129)
289 1qsa_A Protein (soluble lytic 51.7 2E+02 0.0068 28.8 26.0 305 20-347 74-409 (618)
290 2pk8_A Uncharacterized protein 50.1 8.9 0.0003 27.1 2.1 47 375-429 12-58 (103)
291 2r9g_A AAA ATPase, central reg 48.7 82 0.0028 26.1 8.0 62 86-148 16-85 (204)
292 3eiq_C Programmed cell death p 47.6 1.7E+02 0.0058 26.9 15.7 74 185-260 220-295 (358)
293 3mkr_B Coatomer subunit alpha; 46.9 74 0.0025 28.7 8.1 56 280-349 191-248 (320)
294 2ion_A PDCD4, programmed cell 46.3 45 0.0015 26.4 6.1 64 154-217 12-80 (152)
295 3kea_A K1L; tropism, ANK repea 45.6 88 0.003 27.4 8.8 92 259-354 132-223 (285)
296 3b7b_A Euchromatic histone-lys 45.4 35 0.0012 28.8 5.9 205 24-244 14-234 (237)
297 4gq2_M Nucleoporin NUP120; bet 44.9 2.9E+02 0.0098 29.4 13.8 127 56-196 816-950 (950)
298 2lo3_A SAGA-associated factor 44.4 10 0.00036 22.2 1.4 13 443-455 15-27 (44)
299 4a1g_A Mitotic checkpoint seri 43.3 1.2E+02 0.0041 23.9 8.7 51 302-352 82-134 (152)
300 3bge_A Predicted ATPase; struc 41.3 1.1E+02 0.0037 25.4 7.6 45 86-130 9-56 (201)
301 3esl_A Checkpoint serine/threo 40.8 1.6E+02 0.0054 24.5 11.5 66 83-149 82-148 (202)
302 4b4t_S RPN3, 26S proteasome re 39.5 1.3E+02 0.0044 29.3 9.1 26 219-244 233-258 (523)
303 2wvi_A Mitotic checkpoint seri 39.3 1.5E+02 0.005 23.8 9.2 51 302-352 77-129 (164)
304 2k0q_A Putative uncharacterize 39.1 11 0.00037 25.0 1.1 21 464-484 8-28 (74)
305 2fe3_A Peroxide operon regulat 38.0 90 0.0031 24.2 6.7 58 107-165 13-70 (145)
306 3eu9_A Huntingtin-interacting 37.9 1.2E+02 0.0041 25.1 8.2 82 266-348 152-236 (240)
307 3kae_A CDC27, possible protein 37.4 1.7E+02 0.0056 23.8 9.5 51 60-112 43-93 (242)
308 3ctd_A Putative ATPase, AAA fa 36.3 1.3E+02 0.0043 25.2 7.3 67 82-148 33-107 (213)
309 3eiq_C Programmed cell death p 36.3 1.6E+02 0.0053 27.2 8.8 66 54-119 221-291 (358)
310 3bqo_A Telomeric repeat-bindin 35.2 1.9E+02 0.0066 23.9 8.1 27 292-318 124-150 (211)
311 2p1h_A APAF-1, apoptotic prote 34.9 80 0.0027 22.3 5.5 36 64-99 50-85 (94)
312 1oyz_A Hypothetical protein YI 34.7 2.2E+02 0.0075 24.5 23.3 60 251-314 204-263 (280)
313 3hra_A Ankyrin repeat family p 34.6 1.1E+02 0.0038 24.6 7.3 17 161-177 113-129 (201)
314 4aez_C MAD3, mitotic spindle c 34.5 77 0.0026 26.9 5.9 51 302-352 131-183 (223)
315 2xig_A Ferric uptake regulatio 34.5 1.4E+02 0.0048 23.3 7.3 45 187-231 31-75 (150)
316 2d2s_A Exocyst complex compone 34.1 1.7E+02 0.006 24.9 8.4 87 260-348 25-120 (235)
317 2fe3_A Peroxide operon regulat 33.7 1E+02 0.0035 23.9 6.4 61 208-270 13-73 (145)
318 3ygs_P Procaspase 9; apoptosis 33.5 51 0.0018 23.6 4.2 36 65-100 52-87 (97)
319 2xig_A Ferric uptake regulatio 33.0 1.4E+02 0.0047 23.4 7.0 36 130-165 40-75 (150)
320 3eu9_A Huntingtin-interacting 32.6 62 0.0021 27.0 5.4 51 27-77 15-66 (240)
321 2zu6_B Programmed cell death p 32.1 1.6E+02 0.0055 26.4 8.1 63 54-116 170-237 (307)
322 4b4t_S RPN3, 26S proteasome re 31.8 3.3E+02 0.011 26.5 10.6 65 81-145 231-299 (523)
323 2p1h_A APAF-1, apoptotic prote 31.8 65 0.0022 22.8 4.5 39 31-70 49-87 (94)
324 3ljn_A Hypothetical protein; a 31.5 96 0.0033 28.2 6.9 80 263-344 180-266 (364)
325 3ljn_A Hypothetical protein; a 30.7 1.7E+02 0.0057 26.5 8.4 83 22-106 21-106 (364)
326 1ug3_A EIF4GI, eukaryotic prot 29.8 1.6E+02 0.0054 26.8 7.8 25 55-79 16-40 (339)
327 3bu8_A Telomeric repeat-bindin 28.7 1.3E+02 0.0045 25.2 6.2 20 260-279 121-140 (235)
328 4ets_A Ferric uptake regulatio 28.7 1.2E+02 0.0041 24.1 6.1 71 199-270 14-86 (162)
329 1oyz_A Hypothetical protein YI 28.2 2.8E+02 0.0097 23.7 21.1 225 50-290 37-272 (280)
330 2yru_A Steroid receptor RNA ac 28.1 93 0.0032 23.3 4.8 43 103-145 48-90 (118)
331 3ygs_P Procaspase 9; apoptosis 27.4 75 0.0026 22.7 4.2 37 165-201 51-87 (97)
332 3kea_A K1L; tropism, ANK repea 27.2 1.2E+02 0.004 26.6 6.4 202 4-219 14-225 (285)
333 4ets_A Ferric uptake regulatio 26.6 1.1E+02 0.0039 24.3 5.5 58 108-166 25-84 (162)
334 1ug3_A EIF4GI, eukaryotic prot 24.8 2.3E+02 0.0079 25.7 8.0 27 21-47 14-40 (339)
335 2hgo_A CASSIICOLIN; toxin, dis 23.9 16 0.00054 18.3 -0.1 13 476-488 8-22 (27)
336 2o03_A Probable zinc uptake re 23.7 1.3E+02 0.0044 22.8 5.2 46 187-232 15-60 (131)
337 3aji_A 26S proteasome non-ATPa 23.6 3E+02 0.01 22.4 8.4 54 294-352 145-198 (231)
338 2zu6_B Programmed cell death p 23.6 3.9E+02 0.013 23.8 14.4 25 22-46 7-31 (307)
339 1qc6_A EVH1 domain from ENA/VA 23.4 30 0.001 26.5 1.4 40 436-483 44-87 (130)
340 3hra_A Ankyrin repeat family p 23.3 2E+02 0.0069 22.9 6.9 58 295-352 113-171 (201)
341 3eyy_A Putative iron uptake re 23.2 1.5E+02 0.0052 22.9 5.6 32 134-165 35-66 (145)
342 3kae_A CDC27, possible protein 22.8 3.1E+02 0.011 22.3 8.8 50 163-214 45-94 (242)
343 3us6_A Histidine-containing ph 22.8 2.8E+02 0.0095 21.7 8.5 41 21-61 10-50 (153)
344 1mzb_A Ferric uptake regulatio 22.1 1.9E+02 0.0064 22.0 5.9 44 188-231 23-67 (136)
345 3qye_A TBC1 domain family memb 22.0 4.3E+02 0.015 23.6 9.9 109 95-207 163-287 (331)
346 1k1a_A B-cell lymphoma 3-encod 21.9 1.7E+02 0.0056 24.3 6.2 187 121-309 11-204 (241)
347 3qye_A TBC1 domain family memb 21.7 2.5E+02 0.0086 25.2 7.6 42 4-45 209-250 (331)
348 1mzb_A Ferric uptake regulatio 21.3 2.3E+02 0.0078 21.5 6.2 34 132-165 34-67 (136)
349 2o03_A Probable zinc uptake re 21.0 1.4E+02 0.0049 22.5 5.0 45 86-130 15-59 (131)
350 3eyy_A Putative iron uptake re 20.8 1.6E+02 0.0055 22.8 5.3 37 233-270 33-69 (145)
351 4a1g_A Mitotic checkpoint seri 20.3 3.2E+02 0.011 21.5 10.7 51 100-150 84-135 (152)
352 3f3f_C Nucleoporin NUP85; stru 20.3 2.1E+02 0.0073 28.1 6.9 87 185-274 482-570 (570)
353 3l6a_A Eukaryotic translation 20.2 2.3E+02 0.0077 26.1 6.9 82 153-234 14-100 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-32 Score=278.50 Aligned_cols=342 Identities=11% Similarity=0.023 Sum_probs=272.9
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC-
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVKVK- 79 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~- 79 (488)
|.+++..+++ ..|+..++..++.+|.+.|++++|..+|+.+.. ++++.+|+.++.+|.++|++++|.++|+++.+.
T Consensus 103 A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 180 (597)
T 2xpi_A 103 AAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180 (597)
T ss_dssp HHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc
Confidence 4456666653 345667777777777777777777777777643 234677777777777777777777777754332
Q ss_pred ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------------------------
Q 036287 80 ------------------DTVCWTAMIDGLVRNGEMARALDLFREMQRDNV----------------------------- 112 (488)
Q Consensus 80 ------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------------------- 112 (488)
+..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 260 (597)
T 2xpi_A 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260 (597)
T ss_dssp ----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCT
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCC
Confidence 366777777777777777777777777654321
Q ss_pred -----------------------------------------CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC----
Q 036287 113 -----------------------------------------RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI---- 147 (488)
Q Consensus 113 -----------------------------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---- 147 (488)
+++..++..++.++.+.|++++|.++++.+.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 340 (597)
T 2xpi_A 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340 (597)
T ss_dssp HHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT
T ss_pred cccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH
Confidence 15666667777777777777777777777765431
Q ss_pred -----------------------------CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc
Q 036287 148 -----------------------------DLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH 195 (488)
Q Consensus 148 -----------------------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 195 (488)
+.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34577888899999999999999999998764 4678999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHH
Q 036287 196 GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++
T Consensus 421 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp TCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998863 457888999999999999999999999999853 244688999999999999999999999
Q ss_pred HHhC-------CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 276 ITNM-------KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 276 ~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
|+++ +..|+ ..+|..++.+|...|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9988 45777 78999999999999999999999999999999999999999999999999999999999997
Q ss_pred hC
Q 036287 347 EA 348 (488)
Q Consensus 347 ~~ 348 (488)
+.
T Consensus 578 ~~ 579 (597)
T 2xpi_A 578 AI 579 (597)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-32 Score=280.17 Aligned_cols=374 Identities=10% Similarity=-0.006 Sum_probs=312.0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhc--CCCCHHHHHHHHHHH
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRV--KVKDTVCWTAMIDGL 91 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~ 91 (488)
.+++..++.++..|.+.|++++|..+|+++.. .++..+|..++.+|.+.|++++|..+|+.+ ..++..+|+.++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 36788899999999999999999999999865 223688999999999999999999999998 477899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHH--
Q 036287 92 VRNGEMARALDLFREMQRD---------------NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVG-- 154 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-- 154 (488)
.+.|++++|+++|+++... +.+++..++..++.++.+.|++++|.++|+.+.+.+. .+...+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHH
Confidence 9999999999999853221 2344688999999999999999999999999988752 233332
Q ss_pred ------------------------------------HHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcC
Q 036287 155 ------------------------------------GALINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHG 196 (488)
Q Consensus 155 ------------------------------------~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g 196 (488)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 2336677889999999999999987 89999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFI 276 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 276 (488)
++++|+++|+++.+.+ +.+..++..++.+|...|++++|..+++.+.+ ..+.+..+++.++.+|.+.|++++|.++|
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999864 34677889999999999999999999999984 33456889999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCC
Q 036287 277 TNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354 (488)
Q Consensus 277 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 354 (488)
+++ ...| +..+|+.++.++...|++++|..+++++.+..|++..+|..++.+|.+.|++++|.++|+++.+.... ++
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 988 3344 58899999999999999999999999999999999999999999999999999999999999875322 11
Q ss_pred ceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCC
Q 036287 355 GCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPST 401 (488)
Q Consensus 355 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 401 (488)
..|..+ .......++.+++.+.++++.+...+.|..|+.
T Consensus 476 -~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 476 -LLLNEL-------GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -HHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -HHHHHH-------HHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 112110 112224567777877666666655555778874
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.4e-29 Score=252.52 Aligned_cols=182 Identities=18% Similarity=0.221 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHHcCCCCcHhH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA---------LELGRWIHSYMGKHRIDLNHIV 153 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 153 (488)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666777777777777777777777777777777777777777765443 5667777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
|++||++|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777763 57777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh
Q 036287 230 GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR 265 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 265 (488)
.|++++|.+++++|.+. +..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 77777777777777754 777777777777777664
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.8e-28 Score=242.18 Aligned_cols=200 Identities=13% Similarity=0.201 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---------H
Q 036287 98 ARALDLFREMQRDNVRPNE-VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD---------I 167 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 167 (488)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456667788777776654 46888999999999999999999999999999999999999999988764 7
Q ss_pred HHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 168 DKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 168 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
+.|.++|++|.. ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999974 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHh
Q 036287 244 TRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKIH 298 (488)
Q Consensus 244 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~ 298 (488)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..|...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 975 99999999999999999999999999999999 8899999999999988754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=9e-26 Score=219.89 Aligned_cols=340 Identities=16% Similarity=0.129 Sum_probs=294.9
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
|.+.+..+++.. +.+...+..+...+.+.|++++|...++.... +++..+|..+...|.+.|++++|.+.|+++.
T Consensus 18 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 18 AERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 445666666654 34556677888899999999999999987655 4457899999999999999999999999875
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 -VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.+..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..
T Consensus 97 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 174 (388)
T 1w3b_A 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSN 174 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3456789999999999999999999999999864 3345667778888999999999999999999875 456788999
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++
T Consensus 175 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 253 (388)
T 1w3b_A 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLI 253 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999874 456789999999999999999999999998852 33567888899999999999
Q ss_pred HHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCChhHHHHHHHH
Q 036287 234 DLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-K-IAPDHIMLGSLLSACKIHGKLQLGEQIAKR 310 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 310 (488)
++|...|+.+.+. .| +...|..+...|.+.|++++|.+.++++ . .+++..+|..+...+...|++++|...+++
T Consensus 254 ~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 254 DLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999852 44 4678999999999999999999999998 3 334688999999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 311 LLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 311 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 331 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999763
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.6e-24 Score=211.07 Aligned_cols=325 Identities=13% Similarity=0.082 Sum_probs=284.2
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CC
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK--VK 79 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~ 79 (488)
..+...++.. +.+..++..+...|.+.|++++|...|+++.. +++..+|..+..++.+.|++++|.+.|+++. .|
T Consensus 54 ~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 54 HFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444555543 56788999999999999999999999998865 4456789999999999999999999999875 33
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 036287 80 -DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALI 158 (488)
Q Consensus 80 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 158 (488)
+...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+++.+ +.+...+..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 56688889999999999999999999998864 4467899999999999999999999999999876 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
..|...|++++|...|++... .+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..++...|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998764 467899999999999999999999999999853 3346788899999999999999
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
|...|+.+.+. .+.+..++..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++
T Consensus 290 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 290 AEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999853 3556889999999999999999999999998 5555 478999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhcCCC
Q 036287 314 CRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 314 ~~p~~~~~~~~l~~~~~~~g~ 334 (488)
..|.++.+|..+...+...|+
T Consensus 368 ~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCTTCHHHHHHHHHHHHHTCC
T ss_pred hCCCCHHHHHhHHHHHHHccC
Confidence 999999999999998877664
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.4e-24 Score=211.30 Aligned_cols=323 Identities=15% Similarity=0.150 Sum_probs=275.5
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHH
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMID 89 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~ 89 (488)
+.+...+..+...|.+.|++++|..+|+.+.. +++..+|..+..+|.+.|++++|...|+++. +.+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34677889999999999999999999998765 4468899999999999999999999999876 446889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHhcCchHHHHHHHHHHHHcCCCCcHhH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNE----VTIVCV------------LSACSQLGALELGRWIHSYMGKHRIDLNHIV 153 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 153 (488)
.|.+.|++++|+..|+++.+.. |+. ..+..+ ...+...|++++|...+..+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999999854 443 455544 444889999999999999999875 557888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHH------
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT-FVGV------ 223 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l------ 223 (488)
+..+..+|.+.|++++|.++|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+... +..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 99999999999999999999999864 57899999999999999999999999999974 454433 3333
Q ss_pred ------HHHHhccCCHHHHHHHHHhcccccCcccC-----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036287 224 ------LNACSHGGLVDLGFEIFQSMTRDYGIEPQ-----IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGS 290 (488)
Q Consensus 224 ------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 290 (488)
..+|.+.|++++|...|+.+.+. .|+ ..++..+..++.+.|++++|.+.++++ ...| +..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78899999999999999999853 454 457899999999999999999999987 4445 6899999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH------------HHHhcCC-----ChHHHHHHHHHH
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS------------NAYASSG-----KWKEAVQIRAKM 345 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~m 345 (488)
+..+|...|++++|...++++++..|.++.++..+. +.|...| +.+++.+.++++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999988888 4466566 455667766653
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.2e-22 Score=198.46 Aligned_cols=295 Identities=13% Similarity=0.083 Sum_probs=257.0
Q ss_pred CceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036287 48 NDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLS 124 (488)
Q Consensus 48 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 124 (488)
+++..|..+...|.+.|++++|..+|+++. +.+..+|..+..+|...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 367889999999999999999999999875 4578899999999999999999999999999875 456888999999
Q ss_pred HHHhcCchHHHHHHHHHHHHcCCCCcH---hHHHHH------------HHHHHhcCCHHHHHHHHHhccc---CCHHHHH
Q 036287 125 ACSQLGALELGRWIHSYMGKHRIDLNH---IVGGAL------------INMYSRCGDIDKALQVFEEMKE---RDVTTYN 186 (488)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~ 186 (488)
++...|++++|...++.+.+.. +.+. ..+..+ ...|.+.|++++|...|+++.+ .+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999875 3344 555555 4459999999999999999764 4778999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHH------
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCI------ 259 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l------ 259 (488)
.+...|.+.|++++|+..|+++.+. .+.+..++..+..++...|++++|...|+.+.+ +.|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999875 245678899999999999999999999999984 3454 4444444
Q ss_pred ------HHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 260 ------VDLLSRVGRPEEAYDFITNM-KIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 260 ------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
...|.+.|++++|.+.|+++ ...|+ ...|..+...+...|++++|...++++++..|.++.+|..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999998 44454 4578888999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHhC
Q 036287 328 AYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 328 ~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+|...|++++|.+.++++.+.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.5e-22 Score=202.57 Aligned_cols=340 Identities=8% Similarity=-0.059 Sum_probs=286.4
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVK 79 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 79 (488)
|...+..+++.. |+..++..+...|.+.|++++|...|+++.+ +++..+|..+..+|.+.|++++|...|+++...
T Consensus 25 A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 25 AIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 567788888876 7899999999999999999999999998765 445778999999999999999999999876311
Q ss_pred ---C----------------------------------------------------------------------------
Q 036287 80 ---D---------------------------------------------------------------------------- 80 (488)
Q Consensus 80 ---~---------------------------------------------------------------------------- 80 (488)
+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (514)
T 2gw1_A 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182 (514)
T ss_dssp SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCS
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcC
Confidence 1
Q ss_pred ---HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036287 81 ---TVCWTAMIDGLVR---NGEMARALDLFREMQR-----DNVR--------PNEVTIVCVLSACSQLGALELGRWIHSY 141 (488)
Q Consensus 81 ---~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 141 (488)
...|..+...+.. .|++++|+..|+++.+ ..-. .+..++..+...+...|++++|...+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2333344444444 8999999999999987 3112 2346777888889999999999999999
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 036287 142 MGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV 218 (488)
Q Consensus 142 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 218 (488)
+.+.... ..++..+..+|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|++..+.. +.+..
T Consensus 263 ~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 339 (514)
T 2gw1_A 263 AIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIF 339 (514)
T ss_dssp HHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSH
T ss_pred HHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHH
Confidence 9987644 88889999999999999999999998765 366789999999999999999999999999863 33567
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHH
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPD----HIMLGS 290 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ 290 (488)
.+..+...+...|++++|...+..+.+. .+.+...+..+...|.+.|++++|.+.++++ +..|+ ...|..
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 7888899999999999999999998853 2335678889999999999999999999887 22222 448899
Q ss_pred HHHHHHH---hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 291 LLSACKI---HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 291 ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...+.. .|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999 999999999999999999999999999999999999999999999998774
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.2e-21 Score=191.45 Aligned_cols=327 Identities=11% Similarity=-0.007 Sum_probs=273.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVR 93 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 93 (488)
...+..+...|.+.|++++|...|+++.. .++..+|..+..+|.+.|++++|...|+++. +.+..+|..+..+|.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999866 2358899999999999999999999999875 4467899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC----------------------------------------------------------
Q 036287 94 NGEMARALDLFREMQRDNVRPN---------------------------------------------------------- 115 (488)
Q Consensus 94 ~g~~~~A~~~~~~m~~~g~~p~---------------------------------------------------------- 115 (488)
.|++++|+..|+++.+.+. ++
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999987642 11
Q ss_pred ---------------------HHHHHHHHHHHHh---cCchHHHHHHHHHHHH-----cCC--------CCcHhHHHHHH
Q 036287 116 ---------------------EVTIVCVLSACSQ---LGALELGRWIHSYMGK-----HRI--------DLNHIVGGALI 158 (488)
Q Consensus 116 ---------------------~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~li 158 (488)
...+......+.. .|++++|...+..+.+ ... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 2222233333333 7999999999999988 311 23456788899
Q ss_pred HHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLG 236 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 236 (488)
..|...|++++|...|+++.+ |+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998764 457789999999999999999999999998853 44567888889999999999999
Q ss_pred HHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
...++.+.+. .+.+...+..+...|...|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+.
T Consensus 324 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998852 2335678889999999999999999999987 3333 5678899999999999999999999999998
Q ss_pred CCCCch------hHHHHHHHHhc---CCChHHHHHHHHHHHhC
Q 036287 315 RSADSG------TYVLLSNAYAS---SGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 315 ~p~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~ 348 (488)
.|.++. ++..++.+|.. .|++++|.+.++++.+.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 877755 89999999999 99999999999998775
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=8.2e-20 Score=174.88 Aligned_cols=305 Identities=14% Similarity=0.127 Sum_probs=222.7
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGL 91 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 91 (488)
|+..+..+...|.+.|++++|...|+.+.. +++..+|..+...|...|++++|...|++.. +.+..+|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456677888889999999999999988755 3457788888999999999999999998865 33677888899999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRP----NEVTIVCV------------LSACSQLGALELGRWIHSYMGKHRIDLNHIVGG 155 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 155 (488)
...|++++|+..|+++.+.. | +...+..+ ...+...|++++|...+..+.+.. +.+..++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 99999999999999988753 4 33344333 466778888888888888887765 45667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHH----------
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK-VTFV---------- 221 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~---------- 221 (488)
.+...|...|++++|...|+++.+ .+..+|..+...|...|++++|...|++..+. .|+. ..+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 888888888888888888887664 45677888888888888888888888888764 2332 2221
Q ss_pred --HHHHHHhccCCHHHHHHHHHhcccccCcccCh-----hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036287 222 --GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQI-----EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLL 292 (488)
Q Consensus 222 --~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 292 (488)
.+...+...|++++|...++.+.+. .|+. ..+..+...|...|++++|.+.+++. ...| +..+|..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2244566777777777777777643 2331 23445667777777777777777766 3334 566777777
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
..+...|++++|...++++++.+|.++..+..+..++
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 7777777777777777777777777766666655544
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.6e-19 Score=172.78 Aligned_cols=294 Identities=12% Similarity=0.054 Sum_probs=249.7
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
+..|..+...+...|++++|...|+++. +.+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 4567888999999999999999999875 4468899999999999999999999999998864 44678899999999
Q ss_pred HhcCchHHHHHHHHHHHHcCCC--CcHhHHHHH------------HHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRID--LNHIVGGAL------------INMYSRCGDIDKALQVFEEMKE---RDVTTYNSLI 189 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 189 (488)
...|++++|...+..+.+.... .+...+..+ ...|...|++++|.+.|+++.+ .+...|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999987520 345555555 5889999999999999998764 4778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHH-----------
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYG----------- 257 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----------- 257 (488)
..|...|++++|+..|++..+. .+.+..++..+...+...|++++|...++.+.+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 3456778888999999999999999999998853 343 33222
Q ss_pred -HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 258 -CIVDLLSRVGRPEEAYDFITNM-KIAPD-H----IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 258 -~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3366789999999999999987 33344 3 335567788999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 036287 331 SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~ 348 (488)
..|++++|.+.+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999998764
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.1e-19 Score=184.48 Aligned_cols=340 Identities=10% Similarity=-0.000 Sum_probs=264.1
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC-C
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-V 78 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~ 78 (488)
|...+..+++.. +.++.++..+...|.+.|++++|.+.|+++.+ +++..+|..+..+|...|++++|...|+.+. .
T Consensus 44 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 122 (537)
T 3fp2_A 44 AIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122 (537)
T ss_dssp CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 456667777654 44677788888888888888888888887654 4457778888888888888888888775442 1
Q ss_pred CCHH---------------------------------------------------------------------HHHHHHH
Q 036287 79 KDTV---------------------------------------------------------------------CWTAMID 89 (488)
Q Consensus 79 ~~~~---------------------------------------------------------------------~~~~li~ 89 (488)
|+.. .+..+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (537)
T 3fp2_A 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHH
Confidence 1100 1111111
Q ss_pred HHH--------HcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhH
Q 036287 90 GLV--------RNGEMARALDLFREMQRDNVRPN-E-------VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIV 153 (488)
Q Consensus 90 ~~~--------~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 153 (488)
.+. ..|++++|+.+|+++.+.. |+ . .++..+...+...|++++|...+..+.+.. |+..+
T Consensus 203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 278 (537)
T 3fp2_A 203 LYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNS 278 (537)
T ss_dssp HHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchH
Confidence 111 1146778888888887653 33 2 246666677888999999999999999875 44788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 88999999999999999999998764 467889999999999999999999999999853 33467788889999999
Q ss_pred CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHHh----
Q 036287 231 GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAP----DHIMLGSLLSACKIH---- 298 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~~~~~~ll~~~~~~---- 298 (488)
|++++|...+..+.+. .+.+...+..+...|...|++++|.+.++++ +..+ ....+..+...+...
T Consensus 358 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 358 GKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999853 2344678899999999999999999999986 1111 233345556677777
Q ss_pred ------CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 299 ------GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 299 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987743
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=9.7e-19 Score=165.49 Aligned_cols=284 Identities=12% Similarity=0.043 Sum_probs=190.9
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
+..+..+...+...|++++|.++|+++. +.+...+..++..+...|++++|+.+++++.+.. +.+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 4555555666666666666666666553 2234455556666666666666666666666542 33455666666666
Q ss_pred HhcC-chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHH
Q 036287 127 SQLG-ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 127 ~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 202 (488)
...| ++++|...+..+.+.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+...|...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 6666 6666666666666554 33455566666677777777777777666553 23455666666777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-------CcccChhhHHHHHHHHHhcCChHHHHHH
Q 036287 203 EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-------GIEPQIEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 203 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
..|++..+.. +.+...+..+...+...|++++|...++.+.+.. ..+.....+..+...|.+.|++++|.+.
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777776642 3345566666667777777777777776665421 1133456888888899999999999998
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH-hcCCChH
Q 036287 276 ITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY-ASSGKWK 336 (488)
Q Consensus 276 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 336 (488)
+++. ...| +...|..+...+...|++++|...++++++..|.++.++..+..++ ...|+.+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8887 3333 5778888999999999999999999999999999988999998888 4556543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=4e-18 Score=161.21 Aligned_cols=286 Identities=14% Similarity=0.059 Sum_probs=240.2
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHH
Q 036287 13 GLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAM 87 (488)
Q Consensus 13 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~l 87 (488)
+++.+..++..+...+...|++++|.++|+++.. +.+...+..++..+...|++++|..+|+++. +.+..+|..+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 4566777888999999999999999999999765 3357788889999999999999999999875 4467899999
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 88 IDGLVRNG-EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 88 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
...+...| ++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999998864 4467889999999999999999999999999876 3456667779999999999
Q ss_pred HHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHhccCCHHH
Q 036287 167 IDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG--------IRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 167 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
+++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+.+..++..+..++...|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999998775 467889999999999999999999999998742 13345788889999999999999
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHhCChh
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSAC-KIHGKLQ 302 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~~~ 302 (488)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999853 2335788999999999999999999999998 6666 467777777766 4445543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=4.7e-19 Score=170.64 Aligned_cols=281 Identities=11% Similarity=0.003 Sum_probs=211.0
Q ss_pred HHHcCCHHHHHH-HHhhcC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 036287 60 YVEHGLVENAFE-VFSRVK---VK----DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA 131 (488)
Q Consensus 60 ~~~~g~~~~A~~-~f~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 131 (488)
+.-.|++++|.. .|++.. +. +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344567777777 666543 11 24567777888888888888888888887764 4466777777788888888
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHH---------------HHHHHH
Q 036287 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNS---------------LIAGLA 193 (488)
Q Consensus 132 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~ 193 (488)
+++|...+..+.+.. +.+..++..+..+|...|++++|.+.|+++... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888887765 446777778888888888888888888776542 1122211 233344
Q ss_pred hcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHH
Q 036287 194 MHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 194 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 272 (488)
..|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999998853221 4778888999999999999999999998853 233477899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC-----------chhHHHHHHHHhcCCChHHHH
Q 036287 273 YDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD-----------SGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 273 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~ 339 (488)
.+.++++ ...| +..+|..+...+...|++++|...++++++..|.+ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999987 4344 57889999999999999999999999999988776 789999999999999999999
Q ss_pred HHHHH
Q 036287 340 QIRAK 344 (488)
Q Consensus 340 ~~~~~ 344 (488)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88763
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=2.3e-18 Score=174.58 Aligned_cols=323 Identities=11% Similarity=0.056 Sum_probs=253.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLV 92 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 92 (488)
...+..+...|.+.|++++|.+.|+++.. ++++.+|..+..+|.+.|++++|++.|+++. +.+..+|..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45678888999999999999999999865 4468899999999999999999999999875 447889999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC------CCCcH---------------
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR------IDLNH--------------- 151 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~--------------- 151 (488)
..|++++|+..|+.+ .. .|+... ..+..+...+....+...+..+.+.. ..|+.
T Consensus 105 ~~g~~~~A~~~~~~~-~~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SL--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-hc--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999643 32 233221 12334444555667777777765431 11111
Q ss_pred ---------------hHHHHHHHHHHhc--------CCHHHHHHHHHhcccC--C--------HHHHHHHHHHHHhcCCh
Q 036287 152 ---------------IVGGALINMYSRC--------GDIDKALQVFEEMKER--D--------VTTYNSLIAGLAMHGRS 198 (488)
Q Consensus 152 ---------------~~~~~li~~y~~~--------g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~ 198 (488)
.....+...|... |++++|..+|+++.+. + ..+|..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 1333444443332 4789999999988762 2 23577777888999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 199 IEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 199 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
++|+..|++..+. .|+...+..+...+...|++++|...+..+.+. .+.+..++..+...|...|++++|.+.+++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999985 566788888999999999999999999999853 234578899999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 279 M-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 279 m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
. ...| +...|..+...+...|++++|...++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 8 3334 467899999999999999999999999999999999999999999999999999999999987654
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=3.8e-18 Score=164.34 Aligned_cols=261 Identities=10% Similarity=-0.035 Sum_probs=205.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888888888888888888888764 4567788888888888888888888888888765 446778888888
Q ss_pred HHHhcCCHHHHHHHHHhcccCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 036287 160 MYSRCGDIDKALQVFEEMKERD-------------VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR-PTKVTFVGVLN 225 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 225 (488)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888899999988888876422 123344577888999999999999999885322 15778888899
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhH
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQL 303 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 303 (488)
.+...|++++|...|+.+.+. .+.+..+|..+..+|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998853 2345788999999999999999999999987 4445 48889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 304 GEQIAKRLLDCRSA------------DSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 304 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
|...++++++..|. +..+|..|..++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999997655 357889999999999999988877654
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.4e-19 Score=172.85 Aligned_cols=282 Identities=12% Similarity=0.132 Sum_probs=137.7
Q ss_pred HhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036287 29 GKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ 108 (488)
Q Consensus 29 ~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (488)
-+.|++++|.++++++.. +.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..+
T Consensus 14 ~~~~~ld~A~~fae~~~~---~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 378999999999999954 469999999999999999999999764 577799999999999999999999777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHH
Q 036287 109 RDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSL 188 (488)
Q Consensus 109 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 188 (488)
+. .+++.+...++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 64 4567889999999999999999988874 367779999999999999999999999988 489999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 268 (488)
+.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+. ..+.....++..|.+.|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCC
Confidence 99999999999999999998 368899999999999999999966554432 334445579999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--CChhHHHHHHHHHHhcCC-----CCchhHHHHHHHHhcCCChHHHH
Q 036287 269 PEEAYDFITNM-KIAP-DHIMLGSLLSACKIH--GKLQLGEQIAKRLLDCRS-----ADSGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 269 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~ 339 (488)
+++|..+++.. +..+ ....|+-|.-++++. +++.+..+.|..-+...| .+...|.-+...|...++|+.|.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999886 5544 478888887777665 344455555544444445 57789999999999999999998
Q ss_pred HH
Q 036287 340 QI 341 (488)
Q Consensus 340 ~~ 341 (488)
..
T Consensus 303 ~t 304 (449)
T 1b89_A 303 IT 304 (449)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=9.9e-18 Score=161.33 Aligned_cols=281 Identities=11% Similarity=0.031 Sum_probs=224.1
Q ss_pred HHHhcCChHHHHH-HHhhCCCCC------ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC
Q 036287 27 LYGKCGEFKDAMQ-LFDEMPECN------DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 27 ~y~~~g~~~~A~~-~~~~m~~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 96 (488)
.|...|++++|.. .|++..... +...|..+...+.+.|++++|...|+++. +.+..+|..+...|.+.|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3445688999998 888655421 36779999999999999999999999875 4477899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHH----------------HHHHH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGG----------------ALINM 160 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----------------~li~~ 160 (488)
+++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.... +...+. .+...
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998864 557889999999999999999999999999987532 222221 23334
Q ss_pred HHhcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 161 YSRCGDIDKALQVFEEMKE--R---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
+ ..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 4 89999999999998864 3 57889999999999999999999999998852 4457788899999999999999
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHhCChh
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP------------DHIMLGSLLSACKIHGKLQ 302 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------~~~~~~~ll~~~~~~g~~~ 302 (488)
|...|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| ...+|..+..++...|+.+
T Consensus 270 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 270 AVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 99999998853 2334788999999999999999999999887 2222 1688999999999999999
Q ss_pred HHHHHHHHHHh
Q 036287 303 LGEQIAKRLLD 313 (488)
Q Consensus 303 ~a~~~~~~~~~ 313 (488)
+|..++++.++
T Consensus 348 ~A~~~~~~~l~ 358 (368)
T 1fch_A 348 AYGAADARDLS 358 (368)
T ss_dssp GHHHHHTTCHH
T ss_pred hHHHhHHHHHH
Confidence 99988875544
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=7.5e-18 Score=162.25 Aligned_cols=259 Identities=10% Similarity=-0.003 Sum_probs=213.1
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA 125 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 125 (488)
+...|..+...+.+.|++++|.+.|+++. +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 46679999999999999999999999875 4578899999999999999999999999998864 4568899999999
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCC---------cHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C---CHHHHHHHHHH
Q 036287 126 CSQLGALELGRWIHSYMGKHRIDL---------NHIVGGALINMYSRCGDIDKALQVFEEMKE--R---DVTTYNSLIAG 191 (488)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~g~~~---------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~ 191 (488)
+...|++++|...++.+.+..... ...++..+...|.+.|++++|...|+++.+ | +..+|..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999998764110 122334468899999999999999999874 2 68899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChH
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 270 (488)
|...|++++|+..|++..+. .+.+..++..+..+|...|++++|...|+.+.+. .|+ ...+..+..+|.+.|+++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999986 2446788999999999999999999999999853 444 788999999999999999
Q ss_pred HHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 036287 271 EAYDFITNM-KIAP-------------DHIMLGSLLSACKIHGKLQLGEQIAKRLL 312 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 312 (488)
+|...++++ ...| +..+|..+..++...|+.+.+..+.++..
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 999999987 2111 26789999999999999999988776643
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=3.2e-19 Score=170.31 Aligned_cols=260 Identities=12% Similarity=0.089 Sum_probs=123.2
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHS 140 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 140 (488)
-+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999766 4999999999999999999999965 2678899999999999999999999988
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036287 141 YMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220 (488)
Q Consensus 141 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 220 (488)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 45578899999999999999999988864 77789999999999999999999999976 378
Q ss_pred HHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Q 036287 221 VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300 (488)
Q Consensus 221 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 300 (488)
..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 99999999999999999999987 25789999999999999999998777766555543 4468899999999
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh-CCCcc
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE-AGVQK 352 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~ 352 (488)
+++|..+++..+.+++.....|.-|..+|++- +.++..+.++.... -+++|
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcH
Confidence 99999999999999999999999999999876 34444444443322 24544
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=3.7e-16 Score=145.29 Aligned_cols=268 Identities=13% Similarity=0.040 Sum_probs=202.0
Q ss_pred HHHHcCCHHHHHHHHhhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH
Q 036287 59 CYVEHGLVENAFEVFSRVKVKD----TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALEL 134 (488)
Q Consensus 59 ~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 134 (488)
-....|++..|+..++.....+ ......+..+|...|++++|+..++. . -+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3445677777777776655333 23445567788888888888876644 2 35566777777777888888888
Q ss_pred HHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 135 GRWIHSYMGKHRI-DLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 135 a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
|.+.++.+...+. +.+..++..+..+|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888877664 44566677788889999999999999988 567888999999999999999999999999885
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 036287 214 RPTKVTF---VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIML 288 (488)
Q Consensus 214 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 288 (488)
.|+.... ...+..+...|++++|..+|+.+.+. .+.+...++.+..+|.+.|++++|...+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4654322 12334445668999999999999864 3556888999999999999999999999987 4445 57889
Q ss_pred HHHHHHHHHhCChhH-HHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 289 GSLLSACKIHGKLQL-GEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
..++..+...|+.++ +..+++++++.+|.++.+. +...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 999999999999875 6789999999999987443 34444555555443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=4.7e-17 Score=153.61 Aligned_cols=273 Identities=8% Similarity=-0.024 Sum_probs=176.0
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
...|..+...+...|++++|..+|+++. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3445555555666666666666665543 2244555555556666666666666666555542 23444555555555
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHH-HH-HHHhcCChhHHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSL-IA-GLAMHGRSIEAVEM 204 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~l 204 (488)
...|++++|...+..+.+... .+...+..+.... ++......+ .. .+...|++++|+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 555555555555555554431 1111111110000 000001111 11 25667778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP 283 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 283 (488)
++++.+.. +.+...+..+...+...|++++|...+..+.+. .+.+...+..+...|...|++++|.+.++++ ...|
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 88877653 335667777777888888888888888887742 2334677888888899999999999988887 3334
Q ss_pred -CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------------CchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 284 -DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------------DSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 284 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
+..+|..+...+...|++++|...++++++..|. ++.++..++.+|...|++++|..++++.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5788999999999999999999999999998888 6789999999999999999999988744
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=4.5e-15 Score=148.91 Aligned_cols=318 Identities=12% Similarity=0.036 Sum_probs=199.5
Q ss_pred chhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCceeeHHHHHHHHHH----cCCHHHHHHHHhhcCC-CCHHHHHHH
Q 036287 17 NRSTRLKLVELYGK----CGEFKDAMQLFDEMPECNDVVASTVMINCYVE----HGLVENAFEVFSRVKV-KDTVCWTAM 87 (488)
Q Consensus 17 ~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~l 87 (488)
++..+..|..+|.. .+++++|.+.|++..+.+++.++..|...|.. .+++++|.+.|++... .+..++..|
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 153 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSM 153 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455556666666 66666666666665555555666666666665 5666666666665442 245556666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 88 IDGLVR----NGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 88 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..++....+.| +...+..|..
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 227 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLAD 227 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 666665 566666666666666543 45555556556655 566666666666666654 3445555666
Q ss_pred HHHh----cCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 160 MYSR----CGDIDKALQVFEEMKE-RDVTTYNSLIAGLAM----HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 160 ~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
+|.. .+++++|...|++..+ .+..++..+...|.. .++.++|+..|++..+.| +...+..+...|...
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Confidence 6664 5667777776666544 345556666666665 667777777777766543 333444555555554
Q ss_pred -----CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----h
Q 036287 231 -----GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG---RPEEAYDFITNMKIAPDHIMLGSLLSACKI----H 298 (488)
Q Consensus 231 -----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 298 (488)
++.++|...|....+. .+...+..|..+|.+.| ++++|.+.|++.-...++..+..|...|.. .
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 6777777777766642 23445566666666655 667777777766222456677777777777 6
Q ss_pred CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc----CCChHHHHHHHHHHHhCC
Q 036287 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS----SGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 349 (488)
+++++|...++++.+.+ ++.++..|..+|.. .+++++|...|++..+.+
T Consensus 381 ~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 77777777777777654 35567777777776 677788888777777665
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.3e-16 Score=159.02 Aligned_cols=336 Identities=11% Similarity=-0.026 Sum_probs=226.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-----------CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC-------C
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-----------CNDVVASTVMINCYVEHGLVENAFEVFSRVK-------V 78 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~ 78 (488)
....||.|...|...|++++|++.|++..+ +...++|+.+...|...|++++|...|++.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 355799999999999999999999876532 2246789999999999999999999888653 1
Q ss_pred ----CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCchHHHHHHHHHHHHcCCCC
Q 036287 79 ----KDTVCWTAMIDGLVRN--GEMARALDLFREMQRDNVRPNEVTIVCVLSA---CSQLGALELGRWIHSYMGKHRIDL 149 (488)
Q Consensus 79 ----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~ 149 (488)
....+++.+..++... +++++|+..|++..+.. |-+...+..+..+ +...++.++|.+.++..++.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1345677666666654 46999999999998853 2344555555444 345577788889998888775 44
Q ss_pred cHhHHHHHHHHHH----hcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHH
Q 036287 150 NHIVGGALINMYS----RCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFV 221 (488)
Q Consensus 150 ~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 221 (488)
+..++..+...+. ..|++++|.+.+++... .+..++..+...|...|++++|+..|++..+. .|+ ..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 5556655554444 45678899999987653 56788999999999999999999999999885 444 44555
Q ss_pred HHHHHHhcc-------------------CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036287 222 GVLNACSHG-------------------GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI 281 (488)
Q Consensus 222 ~ll~a~~~~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 281 (488)
.+..+|... +..++|...+....+. -+.+...+..+...|...|++++|++.|++. ..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 555444321 2356777777777642 2334677888999999999999999999987 44
Q ss_pred CCCHHH----HHHHHHH-HHHhCChhHHHHHHHHHHhc------------------------CCCCchhHHHHHHHHhcC
Q 036287 282 APDHIM----LGSLLSA-CKIHGKLQLGEQIAKRLLDC------------------------RSADSGTYVLLSNAYASS 332 (488)
Q Consensus 282 ~p~~~~----~~~ll~~-~~~~g~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~~~ 332 (488)
.|+... +..+... ....|+.++|+..+++++++ +|.++.+|..|+.+|...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN 443 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 454332 2333322 34568888888888777654 577788999999999999
Q ss_pred CChHHHHHHHHHHHhCCCccCCceeE
Q 036287 333 GKWKEAVQIRAKMKEAGVQKEPGCSS 358 (488)
Q Consensus 333 g~~~~a~~~~~~m~~~g~~~~~~~s~ 358 (488)
|++++|.+.|++..+.+-..+...+|
T Consensus 444 g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 444 EKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHCC----------------------
T ss_pred CCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999998876443334444
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.3e-16 Score=150.63 Aligned_cols=258 Identities=13% Similarity=0.029 Sum_probs=159.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGL 91 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 91 (488)
+...+..+...+.+.|++++|..+|+++.. +++..+|..+...+...|++++|.+.|+++. +.+..+|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 345567888999999999999999998765 4457889999999999999999999999875 44778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCV--------------LS-ACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
...|++++|++.|+++.+.. +.+...+..+ .. .+...|++++|...+..+.+.. +.+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 99999999999999999864 2222233222 11 1444455555555555555443 223444455
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~----------------- 239 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGY----------------- 239 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-----------------
Confidence 55555555555555555554432 233444444455555555555555555444421 122
Q ss_pred HHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHhC
Q 036287 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-------------DHIMLGSLLSACKIHG 299 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g 299 (488)
...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|
T Consensus 240 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 240 -------------------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred -------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 344444555555555555555555444 1111 2455666666666666
Q ss_pred ChhHHHHHHHHHHh
Q 036287 300 KLQLGEQIAKRLLD 313 (488)
Q Consensus 300 ~~~~a~~~~~~~~~ 313 (488)
+.++|..++++.++
T Consensus 301 ~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 301 RPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHTTCCSH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655444
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=1.3e-14 Score=145.53 Aligned_cols=320 Identities=14% Similarity=0.055 Sum_probs=271.2
Q ss_pred CchhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCceeeHHHHHHHHHH----cCCHHHHHHHHhhcCC-CCHHHHHH
Q 036287 16 SNRSTRLKLVELYGK----CGEFKDAMQLFDEMPECNDVVASTVMINCYVE----HGLVENAFEVFSRVKV-KDTVCWTA 86 (488)
Q Consensus 16 ~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~ 86 (488)
.++.....|...|.. .+++++|...|++..+.+++.++..|...|.. .++.++|.+.|++... .+..++..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 366778888888988 89999999999988777778899999999999 9999999999998764 47788899
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 036287 87 MIDGLVR----NGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALI 158 (488)
Q Consensus 87 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 158 (488)
|...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.++++...+.| +...+..|.
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg 190 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLG 190 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 9999998 889999999999998876 56777788888877 789999999999999876 677888899
Q ss_pred HHHHh----cCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 159 NMYSR----CGDIDKALQVFEEMKE-RDVTTYNSLIAGLAM----HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 159 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
.+|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.| +...+..+...+..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHC
Confidence 99998 8999999999998765 567788888888886 889999999999998764 44556666666766
Q ss_pred ----cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhc-----CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-
Q 036287 230 ----GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV-----GRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG- 299 (488)
Q Consensus 230 ----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g- 299 (488)
.++.++|..+|+...+. -+...+..|..+|... +++++|...+++.--..+...+..+...+...|
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGS 343 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Confidence 89999999999998753 3456777888888887 899999999998722235677888888887766
Q ss_pred --ChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc----CCChHHHHHHHHHHHhCCC
Q 036287 300 --KLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS----SGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 300 --~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 350 (488)
+.++|...+++..+.+ ++..+..|..+|.. .+++++|.+.+++..+.|.
T Consensus 344 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 398 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL 398 (490)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC
Confidence 7899999999999874 56789999999999 8999999999999988763
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2.1e-16 Score=147.03 Aligned_cols=246 Identities=12% Similarity=0.078 Sum_probs=203.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 88 IDGLVRNGEMARALDLFREMQRDNVRPNE--VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
|.-....|++.+|+..+++.... .|+. .....+.+++...|+++.|...++. .-+|+......+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999999876543 3443 3556678999999999999976543 24667888889999999999
Q ss_pred CHHHHHHHHHhccc----C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 166 DIDKALQVFEEMKE----R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 166 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
+.++|.+.++++.. | +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 3 566788888999999999999999987 567778888999999999999999999
Q ss_pred HhcccccCcccChhhH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 036287 241 QSMTRDYGIEPQIEHY---GCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR 315 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 315 (488)
+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999853 4653211 23445555669999999999998 334578899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhcCCChHH-HHHHHHHHHhC
Q 036287 316 SADSGTYVLLSNAYASSGKWKE-AVQIRAKMKEA 348 (488)
Q Consensus 316 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 348 (488)
|.++.++..++..+...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888888764
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.1e-14 Score=147.44 Aligned_cols=339 Identities=9% Similarity=0.005 Sum_probs=236.7
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCH
Q 036287 6 HGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK--VKDT 81 (488)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~ 81 (488)
++..++.. +-|...|..++. +.+.|++++|+.+|+++.+ |.+...|..++..+.+.|++++|..+|++.. .|++
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 34444443 446778888888 4778999999999998866 4467789999999999999999999999876 4677
Q ss_pred HHHHHHHHH-HHHcCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCchHHHHHHHHHHHHc
Q 036287 82 VCWTAMIDG-LVRNGEMARALD----LFREMQR-DNVRP-NEVTIVCVLSACSQ---------LGALELGRWIHSYMGKH 145 (488)
Q Consensus 82 ~~~~~li~~-~~~~g~~~~A~~----~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~ 145 (488)
..|...+.. ....|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+..++.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 778777753 345576666554 6666654 34443 34556555554433 57778888888877763
Q ss_pred CCCCcHhHHHHHHHHH-------------HhcCCHH--------------------------------------------
Q 036287 146 RIDLNHIVGGALINMY-------------SRCGDID-------------------------------------------- 168 (488)
Q Consensus 146 g~~~~~~~~~~li~~y-------------~~~g~~~-------------------------------------------- 168 (488)
.......+|....... .+.++++
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 2111112222111100 0111122
Q ss_pred ----------------HHHHHHHhccc---CCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHHcCCCC
Q 036287 169 ----------------KALQVFEEMKE---RDVTTYNSLIAGLAM-------HGRSI-------EAVEMFREMINQGIRP 215 (488)
Q Consensus 169 ----------------~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p 215 (488)
.|..+|++... .+...|..++..+.+ .|+++ +|..+|++..+.-.+.
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 33344544432 355677777777765 68877 8999999987631233
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-h-hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 036287 216 TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-I-EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSL 291 (488)
Q Consensus 216 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 291 (488)
+...+..++..+...|++++|..+|+.+.+ +.|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 466777888888899999999999999884 3554 2 47888888888999999999999987 44443 2333322
Q ss_pred HHH-HHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 292 LSA-CKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 292 l~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
... +...|+.++|..+|+++++..|.++..+..++..+.+.|+.++|..+|++....+
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 222 3468999999999999999999999999999999999999999999999998763
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=170.52 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=122.5
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK-------VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 122 (488)
..+||+||++|+++|++++|.++|+.|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997753 689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCch-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHHHHHHHHHHHHhcC
Q 036287 123 LSACSQLGAL-ELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER-----DVTTYNSLIAGLAMHG 196 (488)
Q Consensus 123 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 196 (488)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999984 789999999999999999999999998777665444444443333321 1334444555566544
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=170.51 Aligned_cols=125 Identities=13% Similarity=0.124 Sum_probs=93.7
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036287 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMK-------ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 220 (488)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886654 368888888888888888888888888888888888888888
Q ss_pred HHHHHHHhccCC-HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHH
Q 036287 221 VGVLNACSHGGL-VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAY 273 (488)
Q Consensus 221 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 273 (488)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHH
Confidence 888888887776 46777888888765 88888888887777666654443333
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.2e-13 Score=139.84 Aligned_cols=340 Identities=9% Similarity=0.030 Sum_probs=244.8
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC-CceeeHHHHHHH-HHHcCCHHHHHH----HHhh
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC-NDVVASTVMINC-YVEHGLVENAFE----VFSR 75 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~~li~~-~~~~g~~~~A~~----~f~~ 75 (488)
++.+++.+++. .+.+...|..++..+.+.|++++|..+|+++... +++..|...+.. ....|++++|.+ +|+.
T Consensus 31 a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~ 109 (530)
T 2ooe_A 31 ARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDF 109 (530)
T ss_dssp HHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 46677777764 3556778999999999999999999999998763 345677777643 345677666654 6665
Q ss_pred cC------CCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------H
Q 036287 76 VK------VKDTVCWTAMIDGLVR---------NGEMARALDLFREMQRDNVRPNEVTIVCVLSAC-------------S 127 (488)
Q Consensus 76 ~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-------------~ 127 (488)
.. .++...|...+....+ .|++++|..+|++.++....+....|....... .
T Consensus 110 al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 189 (530)
T 2ooe_A 110 ALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIED 189 (530)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred HHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 32 2356778887776654 678888888888887721111112222111100 0
Q ss_pred hcCchH------------------------------------------------------------HHHHHHHHHHHcCC
Q 036287 128 QLGALE------------------------------------------------------------LGRWIHSYMGKHRI 147 (488)
Q Consensus 128 ~~~~~~------------------------------------------------------------~a~~~~~~~~~~g~ 147 (488)
..++++ .+..+++.+++..
T Consensus 190 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~- 268 (530)
T 2ooe_A 190 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL- 268 (530)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-
Confidence 001111 3334455554432
Q ss_pred CCcHhHHHHHHHHHHh-------cCCHH-------HHHHHHHhccc---C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 148 DLNHIVGGALINMYSR-------CGDID-------KALQVFEEMKE---R-DVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3456677777777765 69877 89999998764 3 57899999999999999999999999999
Q ss_pred HcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-
Q 036287 210 NQGIRPTK--VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDL-LSRVGRPEEAYDFITNM-KIAP- 283 (488)
Q Consensus 210 ~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p- 283 (488)
+ ..|+. ..|...+..+.+.|++++|.++|....+. .|+ ...|...+.. +...|+.++|..+|++. ...|
T Consensus 349 ~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~ 423 (530)
T 2ooe_A 349 A--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 423 (530)
T ss_dssp H--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred C--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC
Confidence 8 45653 47888888888899999999999999853 333 3333332222 34689999999999987 3334
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch----hHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG----TYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...|..++..+...|+.++|..+|+++++..|.++. .|...+......|+.+.+.++.+++.+.
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999998766554 7777788888999999999999988764
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.4e-15 Score=132.70 Aligned_cols=227 Identities=9% Similarity=-0.020 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC--CcHhHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID--LNHIVGGALIN 159 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~ 159 (488)
..|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|...+..+.+.... ++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 455666666666666666666666666554 45555555555555555555555555554442200 0000
Q ss_pred HHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 160 MYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
....+|..+...|...|++++|+..|++..+. .|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 00345566666666666666666666666663 3442 234445667777777
Q ss_pred HHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
++.+... .+.+...+..+...|...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 7776632 2223566777788888888888888888776 3233 5778888888888889999999999999888888
Q ss_pred CchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 318 DSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 318 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++.++..++.+|...|++++|.+.+++..+.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888888999999999999999988887653
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.4e-15 Score=134.89 Aligned_cols=231 Identities=11% Similarity=0.003 Sum_probs=153.7
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK--VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNV--RPN----EVTIVC 121 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~~ 121 (488)
...|..+...+...|++++|...|++.. ..+..+|..+...|...|++++|+..|++..+... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4578889999999999999999998754 26788999999999999999999999999887421 122 467778
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCCh
Q 036287 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMHGRS 198 (488)
Q Consensus 122 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 198 (488)
+...+...|++++|...+..+.+.. |+ ...+.+.|++++|...++++... +...|..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 8888888888888888888887754 33 23455556677777777665543 234555666666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 199 IEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 199 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
++|+..|++..+.. +.+..++..+..++...|++++|...++.+.+
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------------------------------- 201 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--------------------------------- 201 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------------------------------
Confidence 66666666665532 22333444444444444444444444444432
Q ss_pred CCCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC------CCCchhHHHH
Q 036287 279 MKIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR------SADSGTYVLL 325 (488)
Q Consensus 279 m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l 325 (488)
..| +...|..+...+...|++++|...++++++.. |.+...+..+
T Consensus 202 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 202 --KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred --hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 222 35566666666666777777777777776665 5554444433
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.1e-14 Score=133.69 Aligned_cols=240 Identities=12% Similarity=-0.060 Sum_probs=157.4
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 94 NGEMARALDLFREMQRDNV---RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 94 ~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
.|++++|+..|+++.+... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566666666666665421 1134455566666666677777777666666654 33566666677777777777777
Q ss_pred HHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc
Q 036287 171 LQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY 247 (488)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 247 (488)
.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 777776653 34567777777777777777777777777763 444444444445556667777887777666642
Q ss_pred CcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 248 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|.+...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23333333 3666666777777777777765 33332 5778888889999999999999999999998877544
Q ss_pred HHHHHHHHhcCCChHHHHHHH
Q 036287 322 YVLLSNAYASSGKWKEAVQIR 342 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~ 342 (488)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 55677778888887665
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=1.9e-14 Score=127.74 Aligned_cols=194 Identities=15% Similarity=0.086 Sum_probs=140.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036287 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVL 224 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 224 (488)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 44555666677777777777777777776554 355667777777777777777777777777642 23445666666
Q ss_pred HHHhcc-----------CCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 036287 225 NACSHG-----------GLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSL 291 (488)
Q Consensus 225 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 291 (488)
.++... |++++|...++...+ +.|+ ...+..+..+|...|++++|+..|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 777777 888999988888874 3454 677888889999999999999999887 222678899999
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
..++...|++++|...++++++.+|.++.++..++.++...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=3.3e-14 Score=130.44 Aligned_cols=253 Identities=9% Similarity=-0.004 Sum_probs=137.8
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN--EVTIVCVLSA 125 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~ 125 (488)
..+......+...|++++|+..|++.. +.+..+|..+...|...|++++|+..|++..+.+..|+ ...+..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 345555666666777777777766653 22444666666677777777777777766666321111 2235566666
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHH
Q 036287 126 CSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 202 (488)
+...|++++|...+..+.+.. +.+..++..+..+|...|++++|...|++..+ .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666553 33445566666666666666666666666553 23445555552222334666666
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHhccCC---HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 203 EMFREMINQGIRPT-KVTFVGVLNACSHGGL---VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 203 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
+.|++..+. .|+ ...+..+..++...|+ .++|...++.+.+...-.|+.. -
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~---------------------- 217 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K---------------------- 217 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H----------------------
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h----------------------
Confidence 666665553 222 2333333333333333 3333333333322110011100 0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC
Q 036287 279 MKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS 332 (488)
Q Consensus 279 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 332 (488)
.....+|..+...+...|++++|...++++++.+|.++.+...+.......
T Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 218 ---DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 001246677788888889999999999999999998887776665554433
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=7.1e-13 Score=140.80 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=228.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036287 22 LKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARAL 101 (488)
Q Consensus 22 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 101 (488)
..+...+...|.+++|..+|++.... ....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~--~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVN--TSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCH--HHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 33556677788999999999886422 12223332 27888999999988774 4678999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 036287 102 DLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181 (488)
Q Consensus 102 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 181 (488)
+.|.+. -|...|..++.+|.+.|+++++.+++....+.. ++..+.+.++.+|++.+++++..... ..++
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPN 1194 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCC
Confidence 999663 477888999999999999999999999888765 34444456999999999998644443 4567
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~ 1258 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCF 1258 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHH
Confidence 778888999999999999999999985 378999999999999999999998774 3578888889
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC--CChHHHH
Q 036287 262 LLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS--GKWKEAV 339 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~ 339 (488)
++...|++..|......+ ..++..+..++..|...|.+++|+.+++..+.++|.+...|.-|..+|++. ++..++.
T Consensus 1259 acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999877754 345666778999999999999999999999999988888888888888775 2344444
Q ss_pred HHHH
Q 036287 340 QIRA 343 (488)
Q Consensus 340 ~~~~ 343 (488)
++|.
T Consensus 1337 k~f~ 1340 (1630)
T 1xi4_A 1337 ELFW 1340 (1630)
T ss_pred HHHH
Confidence 4443
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=7.8e-14 Score=123.70 Aligned_cols=192 Identities=15% Similarity=0.057 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33444455555555555555555555554432 2334444455555555555555555555555443 233444445555
Q ss_pred HHHhc-----------CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 160 MYSRC-----------GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 160 ~y~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
+|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 555555555555442 234455555555556666666666666655544 44555555555
Q ss_pred HHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
++...|++++|...|+.+.+ ..| +...+..+..++.+.|++++|...+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555666666665555553 123 244455555555555555555555544
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=1.2e-13 Score=132.83 Aligned_cols=244 Identities=10% Similarity=0.061 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA-LELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
..+|+.+...+.+.|++++|+..|++.++.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888889999999999999999998864 3457788888888889996 999999999998876 457788888999
Q ss_pred HHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHH
Q 036287 160 MYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH-GGLVDL 235 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~ 235 (488)
+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.. +-+...+..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998774 577889999999999999999999999998853 3356677778888887 566566
Q ss_pred H-----HHHHHhcccccCcccC-hhhHHHHHHHHHhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhC-------
Q 036287 236 G-----FEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVG--RPEEAYDFITNMKIAPD-HIMLGSLLSACKIHG------- 299 (488)
Q Consensus 236 a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g------- 299 (488)
| +..|+...+ +.|+ ...|..+..+|...| ++++|++.+.++...|+ ...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477777764 3554 678888888888888 68999998888755554 677888888888764
Q ss_pred --ChhHHHHHHHHH-HhcCCCCchhHHHHHHHHh
Q 036287 300 --KLQLGEQIAKRL-LDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 300 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 330 (488)
..++|..+++++ .+.+|.....|..++..+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258999999999 8999998888887766553
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=9.6e-13 Score=120.95 Aligned_cols=225 Identities=10% Similarity=-0.067 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGG 155 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 155 (488)
+..++..+...|...|++++|+..|++..+. .+..++..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777777777777777777777777763 245566666677777 777777777777777765 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 156 ALINMYSR----CGDIDKALQVFEEMKE-RDVTTYNSLIAGLAM----HGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 156 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 67777777 7777777777776554 355667777777777 777777777777777654 34455555556
Q ss_pred Hhc----cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 036287 227 CSH----GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR----VGRPEEAYDFITNM-KIAPDHIMLGSLLSACKI 297 (488)
Q Consensus 227 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 297 (488)
+.. .+++++|...|+...+. .+...+..+..+|.. .+++++|.+.+++. ... +...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc
Confidence 655 67777777777766642 234555566666666 66777777666665 222 25556666666666
Q ss_pred ----hCChhHHHHHHHHHHhcCCCC
Q 036287 298 ----HGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 298 ----~g~~~~a~~~~~~~~~~~p~~ 318 (488)
.+++++|...++++.+.+|++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 667777777777777666644
No 43
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=2.4e-12 Score=136.80 Aligned_cols=280 Identities=12% Similarity=0.132 Sum_probs=227.9
Q ss_pred hcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 30 KCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 30 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
..|++++|.++.++.. ++.+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++
T Consensus 1088 ~i~nldrAiE~Aervn---~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888888887663 3789999999999999999999999774 6788899999999999999999999998877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHH
Q 036287 110 DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLI 189 (488)
Q Consensus 110 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 189 (488)
.. +++.....++.+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|..+.
T Consensus 1163 ~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA 1228 (1630)
T 1xi4_A 1163 KA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 1228 (1630)
T ss_pred hc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHH
Confidence 54 34333445888999999988655442 2 345566777999999999999999999985 5899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCCh
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRP 269 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 269 (488)
..|.+.|++++|++.+++. .+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+
T Consensus 1229 ~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999986 3568899999999999999999887654 334566778999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHh--CChhHHHHHHHHHHhcCC-----CCchhHHHHHHHHhcCCChHHHHH
Q 036287 270 EEAYDFITNM-KIAPD-HIMLGSLLSACKIH--GKLQLGEQIAKRLLDCRS-----ADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 270 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
++|+.+++.. +..|. ...|+-|...+.+. ++..++.+.|..-....| .+...|.-+...|.+.|+|+.|..
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999876 55553 56777777777665 455566666665555444 466789999999999999999984
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=8.5e-14 Score=127.75 Aligned_cols=237 Identities=8% Similarity=-0.124 Sum_probs=176.2
Q ss_pred cCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 036287 63 HGLVENAFEVFSRVKVK-------DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELG 135 (488)
Q Consensus 63 ~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 135 (488)
.|++++|+..|+++... +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777765531 35678888888888999999999998888764 44678888888888889999999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 136 RWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 136 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
...+..+++.. +.+..++..+..+|.+.|++++|...|+++.+ |+.......+..+...|++++|+..+++.... .
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~ 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-S 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C
Confidence 99998888865 44577888888999999999999999988764 44344444455556779999999999888775 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 036287 214 RPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-----IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIM 287 (488)
Q Consensus 214 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 287 (488)
+++...+ .++..+...++.++|...+....+. .|+ ...+..+...|.+.|++++|...+++. ...|+.
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 3444444 4667778888889999999888743 332 578888999999999999999999988 666643
Q ss_pred HHHHHHHHHHhCChhHHHHHH
Q 036287 288 LGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~ 308 (488)
+.....++...|++++|...+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223345666778888877665
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=5.9e-14 Score=138.94 Aligned_cols=312 Identities=13% Similarity=0.068 Sum_probs=213.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCH---HHHHHHHhhcCCCCHHHHHHHHHHHHHcC----
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLV---ENAFEVFSRVKVKDTVCWTAMIDGLVRNG---- 95 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g---- 95 (488)
.+...+.+.|++++|.++|++..+.+++.++..|...|...|+. ++|.+.|++..+.+..++..|...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 36677888999999999999887777788888888888888888 89999999887667777888888666665
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch---HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----CH
Q 036287 96 -EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGAL---ELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG----DI 167 (488)
Q Consensus 96 -~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~ 167 (488)
++++|+..|++..+.|. |+ .+..+...|...+.. ..+.+.+......| +......|..+|...+ ..
T Consensus 88 ~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 78899999999988773 33 555566666655543 33445555555555 3455667778888777 55
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHH
Q 036287 168 DKALQVFEEMKERDVTTYNSLIAGLAMHG---RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG----GLVDLGFEIF 240 (488)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~ 240 (488)
+.+..+++.....+..++..+...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|..+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 66666777777777778888888888888 8899999999988876 44555445566666654 7889999999
Q ss_pred HhcccccCcccChhhHHHHHHH-H--HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-----ChhHHHHHHHHHH
Q 036287 241 QSMTRDYGIEPQIEHYGCIVDL-L--SRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG-----KLQLGEQIAKRLL 312 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~ 312 (488)
+... +-++..+..|..+ | ...+++++|.+.|++.--..+...+..|...|. .| ++++|...|++..
T Consensus 241 ~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 8875 3445666677776 4 467899999999988722236777777777776 55 8999999999888
Q ss_pred hcCCCCchhHHHHHHHHhc----CCChHHHHHHHHHHHhCCC
Q 036287 313 DCRSADSGTYVLLSNAYAS----SGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 313 ~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 350 (488)
|.++.++..|..+|.. ..++++|.+.+++..+.|.
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 7777888888888877 3488999999998887765
No 46
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.8e-13 Score=136.24 Aligned_cols=303 Identities=14% Similarity=0.002 Sum_probs=202.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-------C---CceeeHHHHHHHHHHcC--CHHHHHHHHhhcC---CCCH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-------C---NDVVASTVMINCYVEHG--LVENAFEVFSRVK---VKDT 81 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~---~~~~~~~~li~~~~~~g--~~~~A~~~f~~~~---~~~~ 81 (488)
...+|+.+..+|...|++++|...|++..+ + ....+++.+..++.+.| ++++|.+.|++.. +.+.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 356789999999999999999988876532 1 12445666666666654 6999999999865 3456
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CchHHHHHHHHHHHHcCCCCcHhHH
Q 036287 82 VCWTAMIDGL---VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQL----GALELGRWIHSYMGKHRIDLNHIVG 154 (488)
Q Consensus 82 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~ 154 (488)
..+..+...+ ...++.++|++.|++..+.. +.+..++..+...+... ++.++|.+.++...+.. +.+..++
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 6666666553 45678889999999988754 34566666666555554 56788999999988875 5567888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc-------------------CChhHHHHHHHHHHHcC
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH-------------------GRSIEAVEMFREMINQG 212 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g 212 (488)
..+...|.+.|++++|...|++..+ .+..+|..+...|... +..++|+..|++..+..
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 330 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN 330 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 9999999999999999999998764 3556777776665432 23567888888887753
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh----hHHHHHH-HHHhcCChHHHHHHHHhC-CC-----
Q 036287 213 IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE----HYGCIVD-LLSRVGRPEEAYDFITNM-KI----- 281 (488)
Q Consensus 213 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~----- 281 (488)
+.+..++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|+.++|++.+++. .+
T Consensus 331 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 331 -DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp -TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred -CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 334556777888999999999999999988743 33322 2223332 234678999998888764 22
Q ss_pred -------------------CC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 282 -------------------AP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 282 -------------------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
.| ++.+|..+...+...|++++|...++++++.+|.+|.+..-+
T Consensus 407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 23 467889999999999999999999999999988777655443
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=5.4e-13 Score=122.25 Aligned_cols=225 Identities=12% Similarity=0.016 Sum_probs=180.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--CC----HHHHHHHHH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKV--KD----TVCWTAMID 89 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~ 89 (488)
..........|.+.|++++|...|++..+ +++..+|..+...|...|++++|.+.|++... ++ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34566778889999999999999998755 34577999999999999999999999998653 22 335899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHH-HHHHhcCCHH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALI-NMYSRCGDID 168 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~y~~~g~~~ 168 (488)
.|...|++++|+..|++..+.. +.+..++..+...+...|++++|...++.+++.. +.+..++..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999999864 4467889999999999999999999999998874 55677787788 5555 45999
Q ss_pred HHHHHHHhccc---CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhccCCHHH
Q 036287 169 KALQVFEEMKE---RDVTTYNSLIAGLAMHGR---SIEAVEMFREMINQG-IRPTK------VTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 169 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~ 235 (488)
+|.+.|+++.+ .+...|..+...+...|+ +++|...|++..+.. -.|+. ..+..+...|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998874 356788888888988888 888999999988642 12331 355566667777777777
Q ss_pred HHHHHHhccc
Q 036287 236 GFEIFQSMTR 245 (488)
Q Consensus 236 a~~~~~~~~~ 245 (488)
|.+.|+.+.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777763
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=9.5e-14 Score=124.90 Aligned_cols=213 Identities=11% Similarity=0.003 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
...+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34566666777777777777777777776643 3345555556666666666666666666655543 223344444444
Q ss_pred HHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 160 MYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
.|...|++++| ++.|+++.+.. +.+...+..+...+...|++++|...
T Consensus 100 ~~~~~~~~~~A-------------------------------~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 100 VYVVKEMYKEA-------------------------------KDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp HHHHTTCHHHH-------------------------------HHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHhccHHHH-------------------------------HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 44444444444 44444444321 22333344444444445555555555
Q ss_pred HHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++..|.
T Consensus 148 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 148 LQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 5444421 1223445556666666677777777766665 222 24667777888888888888888888888888888
Q ss_pred CchhHHHHHHH
Q 036287 318 DSGTYVLLSNA 328 (488)
Q Consensus 318 ~~~~~~~l~~~ 328 (488)
++.++..+...
T Consensus 226 ~~~~~~~~~~l 236 (243)
T 2q7f_A 226 HMLALHAKKLL 236 (243)
T ss_dssp CHHHHHHHTC-
T ss_pred hHHHHHHHHHH
Confidence 77666655443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=5.5e-13 Score=120.79 Aligned_cols=205 Identities=11% Similarity=-0.037 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456666666666666666666666665542 2344455555555555555555555555554443 2233344444444
Q ss_pred HHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 036287 161 YSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
|...|++++|.+.|+++. +.+..| +...+..+..++...|++++|...
T Consensus 115 ~~~~g~~~~A~~~~~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEAS-------------------------------QDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCHHHHHHHHHHHT-------------------------------TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH-------------------------------hCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444433 211112 122222333333333333333333
Q ss_pred HHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
+..+.+. .+.+...+..+...|...|++++|.+.++++ ...| +...+..+...+...|+.++|...++++.+..|.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 3333321 0112334444444555555555555555444 2222 3444555555555666666666666666666655
Q ss_pred Cch
Q 036287 318 DSG 320 (488)
Q Consensus 318 ~~~ 320 (488)
++.
T Consensus 242 ~~~ 244 (252)
T 2ho1_A 242 SLE 244 (252)
T ss_dssp SHH
T ss_pred CHH
Confidence 543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=6.5e-13 Score=117.71 Aligned_cols=195 Identities=12% Similarity=0.001 Sum_probs=123.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 227 (488)
..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44455555666666666666666655442 244556666666666666666666666666542 23445555666666
Q ss_pred hcc-CCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhH
Q 036287 228 SHG-GLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQL 303 (488)
Q Consensus 228 ~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 303 (488)
... |++++|...++.+.+ .+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666654 122332 455666666777777777777776665 2223 36666777777777777777
Q ss_pred HHHHHHHHHhcCC-CCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 304 GEQIAKRLLDCRS-ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 304 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|...++++++..| .++..+..+...+...|+.+++..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 6666777777777777777777777777654
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=4.6e-13 Score=121.27 Aligned_cols=197 Identities=8% Similarity=0.006 Sum_probs=171.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 227 (488)
..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677788888899999999999888764 467788999999999999999999999998863 34667888888999
Q ss_pred hccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHH
Q 036287 228 SHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 304 (488)
...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999986 23455 4678888999999999999999999987 3334 588899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
...++++.+..|.+...+..++..|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997753
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=3.1e-13 Score=131.33 Aligned_cols=267 Identities=15% Similarity=0.082 Sum_probs=172.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHc----CCCC-c
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN----EVTIVCVLSACSQLGALELGRWIHSYMGKH----RIDL-N 150 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~ 150 (488)
....+..+...+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...+..+.+. +.++ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455555666666666666666666666542 122 234555566666666666666666655432 1111 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCC--------------------hhHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGR--------------------SIEA 201 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 201 (488)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34556666777777777777777766543 12 3366677777777777 7777
Q ss_pred HHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHHHHHHHHhcCChHHH
Q 036287 202 VEMFREMINQ----GIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 202 ~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 272 (488)
+..+++..+. +..|. ..++..+...+...|++++|...+....+...-.++ ...+..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777765532 11111 235566667777788888888887776642111111 23677788888888888888
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC------chhHHHHHHHHhcCCChHHH
Q 036287 273 YDFITNM----KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD------SGTYVLLSNAYASSGKWKEA 338 (488)
Q Consensus 273 ~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 338 (488)
...+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888765 11112 5567788888888999999999998888754222 45777888899999999999
Q ss_pred HHHHHHHHh
Q 036287 339 VQIRAKMKE 347 (488)
Q Consensus 339 ~~~~~~m~~ 347 (488)
.+.+++..+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888755
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=3.3e-12 Score=117.30 Aligned_cols=224 Identities=8% Similarity=-0.055 Sum_probs=195.4
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhccc-CCHHHHHHHH
Q 036287 115 NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR----CGDIDKALQVFEEMKE-RDVTTYNSLI 189 (488)
Q Consensus 115 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 189 (488)
+..++..+...+...|++++|...++...+.+ +...+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56778888889999999999999999999843 56778889999999 9999999999998765 4778899999
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 190 AGLAM----HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH----GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 190 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888888 99999999999998863 3 5667788888
Q ss_pred HHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc--
Q 036287 262 LLSR----VGRPEEAYDFITNMKIAPDHIMLGSLLSACKI----HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS-- 331 (488)
Q Consensus 262 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 331 (488)
.|.. .+++++|.+.+++.--..+...+..+...+.. .+++++|...++++.+.+| +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987222367888889999999 9999999999999999876 5688899999999
Q ss_pred --CCChHHHHHHHHHHHhCCC
Q 036287 332 --SGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 332 --~g~~~~a~~~~~~m~~~g~ 350 (488)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987664
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=1.1e-12 Score=116.26 Aligned_cols=209 Identities=9% Similarity=-0.021 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45567777777777777777777777776643 3345566666666666666666666666665543 223444444555
Q ss_pred HHHhc-CCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 036287 160 MYSRC-GDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 160 ~y~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 237 (488)
.|... |++++|...|++ +.+.+..|+ ...+..+..++...|++++|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDK-------------------------------ALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp HHHTTTCCHHHHHHHHHH-------------------------------HHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCcHHHHHHHHHH-------------------------------HHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 55555 555555555544 444211222 233444444455555555555
Q ss_pred HHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA--PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
..+..+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+...++.+.+.
T Consensus 134 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 555554421 1122445556666666666666666666655 222 24555666666677778888888888887777
Q ss_pred CCCCchhHH
Q 036287 315 RSADSGTYV 323 (488)
Q Consensus 315 ~p~~~~~~~ 323 (488)
.|.++....
T Consensus 212 ~p~~~~~~~ 220 (225)
T 2vq2_A 212 FPYSEELQT 220 (225)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHHHHH
Confidence 777765443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.1e-13 Score=135.24 Aligned_cols=265 Identities=15% Similarity=0.047 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHc----C-CCCcHhH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE----VTIVCVLSACSQLGALELGRWIHSYMGKH----R-IDLNHIV 153 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~ 153 (488)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+..+++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455666777777777777777776643 2222 35666666777777777777777766543 1 1223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKER---------DVTTYNSLIAGLAMHGR-----------------SIEAVEMFRE 207 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~ 207 (488)
+..+...|...|++++|...|++..+. ...++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 667777777888888887777765431 23467777777888888 7888877777
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 208 MINQ----GIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 208 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
..+. +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 1111 1235666777788888888888888877642111111 23677888888899999999888877
Q ss_pred C-CC---CCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------CchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 279 M-KI---APD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------DSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 279 m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
. .. ..+ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11 111 567788888999999999999999999875422 234788899999999999999999998
Q ss_pred HHhC
Q 036287 345 MKEA 348 (488)
Q Consensus 345 m~~~ 348 (488)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=1.8e-13 Score=129.08 Aligned_cols=265 Identities=15% Similarity=0.078 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHc----CCC-CcHhH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN----EVTIVCVLSACSQLGALELGRWIHSYMGKH----RID-LNHIV 153 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~ 153 (488)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34444556666666666666666666542 112 244555566666666666666666655432 111 12445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGR--------------------SIEAVEM 204 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 204 (488)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 56667777777777777777766542 22 2366667777777777 7777777
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHHHHHHHHhcCChHHHHHH
Q 036287 205 FREMINQ----GIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 205 ~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765431 1111 1235556667777788888888888776642111111 33677788888888999988888
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------CchhHHHHHHHHhcCCChHHHHHH
Q 036287 276 ITNM----KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------DSGTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 276 ~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
+++. +..++ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8775 11112 556777888899999999999999998875422 134777899999999999999999
Q ss_pred HHHHHhC
Q 036287 342 RAKMKEA 348 (488)
Q Consensus 342 ~~~m~~~ 348 (488)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9988763
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=2.3e-13 Score=122.42 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=154.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 150 NHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
....+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455666777888889999999998888764 367788889999999999999999999998863 3467788888899
Q ss_pred HhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHH
Q 036287 227 CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 304 (488)
+...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998853 2345778889999999999999999999987 3333 688899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...++++.+..|.++.++..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999774
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=2.9e-12 Score=123.20 Aligned_cols=242 Identities=10% Similarity=-0.024 Sum_probs=197.0
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE-MARALDLFREMQRDNVRPNEVTIVCVLS 124 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 124 (488)
+..+|+.+...+.+.|++++|++.|++.. +.+..+|+.+...+...|+ +++|+..|++.++.. +-+...|..+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34678888899999999999999999865 4467899999999999997 999999999999864 346788999999
Q ss_pred HHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHh-cCChhH
Q 036287 125 ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAM-HGRSIE 200 (488)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~ 200 (488)
++...|++++|...++.+++.. +.+..+|..+..+|.+.|++++|+..|+++.+ .+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999886 55788899999999999999999999999875 467899999999998 666688
Q ss_pred H-----HHHHHHHHHcCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC------
Q 036287 201 A-----VEMFREMINQGIRPTKVTFVGVLNACSHGG--LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG------ 267 (488)
Q Consensus 201 A-----~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g------ 267 (488)
| +..|++.++.. +-+...+..+...+...| +.++|.+.+..+ + ..+.+...+..+.++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 8 58888888742 334567777788888888 689999988887 2 33445678888999998874
Q ss_pred ---ChHHHHHHHHhC--CCCCC-HHHHHHHHHHHH
Q 036287 268 ---RPEEAYDFITNM--KIAPD-HIMLGSLLSACK 296 (488)
Q Consensus 268 ---~~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~ 296 (488)
.+++|.++++++ ...|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 358999999987 66675 556766665554
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=2.4e-13 Score=132.11 Aligned_cols=154 Identities=14% Similarity=0.034 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----h
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPT----KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----I 253 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 253 (488)
.++..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3566666666777777777777766654210 111 125556666677777777777777766532111111 4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC------CCCc
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM----KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCR------SADS 319 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~ 319 (488)
.++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++.. +...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 56777788888888888888887765 11112 5677788888999999999999999988753 2234
Q ss_pred hhHHHHHHHHhcCCChH
Q 036287 320 GTYVLLSNAYASSGKWK 336 (488)
Q Consensus 320 ~~~~~l~~~~~~~g~~~ 336 (488)
.++..+...|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 56667777777776653
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=2.8e-12 Score=126.88 Aligned_cols=327 Identities=10% Similarity=-0.006 Sum_probs=221.2
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCCh---HHHHHHHhhCCCCCceeeHHHHHHHHHHcC-----CHHHHHHHH
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEF---KDAMQLFDEMPECNDVVASTVMINCYVEHG-----LVENAFEVF 73 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~m~~~~~~~~~~~li~~~~~~g-----~~~~A~~~f 73 (488)
|.+++....+.| ++..+..|..+|...|+. ++|...|++..+. ++..+..|...+...| +.++|.+.|
T Consensus 22 A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~ 97 (452)
T 3e4b_A 22 AQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLL 97 (452)
T ss_dssp HHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 456777777777 334455677778888888 9999999998877 5889999988676665 789999999
Q ss_pred hhcCCC-CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHc
Q 036287 74 SRVKVK-DTVCWTAMIDGLVRNGEMAR---ALDLFREMQRDNVRPNEVTIVCVLSACSQLGA----LELGRWIHSYMGKH 145 (488)
Q Consensus 74 ~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----~~~a~~~~~~~~~~ 145 (488)
++...+ +..++..|...|...+...+ +.+.+.+....| +......+...+...+. .+.+..++....+
T Consensus 98 ~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~- 173 (452)
T 3e4b_A 98 KKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN- 173 (452)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-
Confidence 987644 45588888888888766444 455555555544 34455566677777674 4444444444433
Q ss_pred CCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhccc---CCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCC
Q 036287 146 RIDLNHIVGGALINMYSRCG---DIDKALQVFEEMKE---RDVTTYNSLIAGLAMH----GRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 146 g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p 215 (488)
.++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+..|++.. . -
T Consensus 174 ---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g 246 (452)
T 3e4b_A 174 ---TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---G 246 (452)
T ss_dssp ---TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---G
T ss_pred ---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---C
Confidence 23347888999999999 99999999998765 3445556777777554 68999999999987 3 3
Q ss_pred CHHHHHHHHHH-H--hccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHH
Q 036287 216 TKVTFVGVLNA-C--SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG-----RPEEAYDFITNMKIAPDHIM 287 (488)
Q Consensus 216 ~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~ 287 (488)
+...+..+... + ...++.++|..+|.+..+. | +...+..|..+|. .| ++++|.+.|++.- .-++..
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A 320 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAA 320 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHH
Confidence 34455555555 3 5689999999999998853 3 5667778888887 55 9999999999988 667888
Q ss_pred HHHHHHHHHH----hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc----CCChHHHHHHHHHHHhCCCc
Q 036287 288 LGSLLSACKI----HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS----SGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 288 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 351 (488)
+..|...|.. ..+.++|...+++..+.+ ++.....|..+|.. ..+.++|...++...+.|..
T Consensus 321 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 321 DYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 8888877765 349999999999998865 45678889989875 45899999999999887753
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=8.2e-13 Score=128.93 Aligned_cols=265 Identities=11% Similarity=0.013 Sum_probs=188.9
Q ss_pred eHHHHHHHHHHcCCHHHHHHHHhhcC---CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHH
Q 036287 52 ASTVMINCYVEHGLVENAFEVFSRVK---VKDT----VCWTAMIDGLVRNGEMARALDLFREMQRD----NV-RPNEVTI 119 (488)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~ 119 (488)
.+..+...+...|++++|...|++.. ..+. .+|..+...|...|++++|+..|++..+. +- +....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34455667777888888888887754 2232 46777888888888888888888776542 11 1234566
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHc----C-CCCcHhHHHHHHHHHHhcCC-----------------HHHHHHHHHhc
Q 036287 120 VCVLSACSQLGALELGRWIHSYMGKH----R-IDLNHIVGGALINMYSRCGD-----------------IDKALQVFEEM 177 (488)
Q Consensus 120 ~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~~~~ 177 (488)
..+...+...|++++|...+..+.+. + .+....++..+...|...|+ +++|...|++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777788888888888888776554 1 12234567778888888888 88888887765
Q ss_pred cc-----C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 178 KE-----R----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPT----KVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 178 ~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
.+ . ...+|..+...|...|++++|+..|++..+... .++ ...+..+...+...|++++|...++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 43 1 234677888888999999999999988775311 111 226677788889999999999998887
Q ss_pred ccccCcc----cChhhHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 244 TRDYGIE----PQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI---APD----HIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 244 ~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
.+...-. .....+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6421111 11467788889999999999999998876 11 111 457788888999999999999999999
Q ss_pred HhcCC
Q 036287 312 LDCRS 316 (488)
Q Consensus 312 ~~~~p 316 (488)
+++.+
T Consensus 370 l~~~~ 374 (411)
T 4a1s_A 370 LQLAX 374 (411)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 88764
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=2.9e-11 Score=113.24 Aligned_cols=218 Identities=11% Similarity=0.055 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCch-------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACS-------QLGAL-------ELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
++|+.+|++..... +-+...|..++..+. ..|+. ++|..+++..++.-.+.+..+|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 345666666666554 34665 7888888888773224456678888888888
Q ss_pred cCCHHHHHHHHHhccc--C-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 036287 164 CGDIDKALQVFEEMKE--R-DVT-TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC-SHGGLVDLGFE 238 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 238 (488)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887764 2 333 78888888888888888888888888753 23334444333322 23688888888
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-K---IAP--DHIMLGSLLSACKIHGKLQLGEQIAKRLL 312 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 312 (488)
+|+...+. .+.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888753 2234677888888888888888888888877 2 354 36678888888888888888888888888
Q ss_pred hcCCCCc
Q 036287 313 DCRSADS 319 (488)
Q Consensus 313 ~~~p~~~ 319 (488)
+..|.+.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8888654
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=4.9e-13 Score=133.20 Aligned_cols=208 Identities=8% Similarity=-0.075 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI-DKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 132 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555544432 34667777778888888888 888888877653 3567888888888888999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhc--------CCh
Q 036287 208 MINQGIRPTKVTFVGVLNACSHG---------GLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRV--------GRP 269 (488)
Q Consensus 208 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~ 269 (488)
..+. .|+...+..+..++... |++++|...|++..+. .| +...|..+..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8874 57777788888888888 8999999999888742 34 477888888888888 889
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 270 EEAYDFITNM-KIAP----DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 270 ~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|.++.++..+..++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999887 4455 6889999999999999999999999999999999999999999999999999999876544
Q ss_pred H
Q 036287 345 M 345 (488)
Q Consensus 345 m 345 (488)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=2.9e-12 Score=120.68 Aligned_cols=133 Identities=14% Similarity=0.051 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hh
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPT----KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IE 254 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 254 (488)
++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 555666666667777777777766654210 011 124555666667777777777777666532111111 45
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KI---APD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
.+..+...|...|++++|...+++. .. .++ ..++..+...+...|++++|...++++++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6667777888888888888877765 11 111 45677788888999999999999999888654
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=7.8e-12 Score=107.36 Aligned_cols=165 Identities=14% Similarity=0.089 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHH
Q 036287 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIV 260 (488)
Q Consensus 181 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 260 (488)
+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34455556666666666666666666665532 223445555556666666666666666665531 122345555566
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHH
Q 036287 261 DLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEA 338 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 338 (488)
..+...++++.|.+.+.+. ...| +...+..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666777777777776665 2233 4667777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhC
Q 036287 339 VQIRAKMKEA 348 (488)
Q Consensus 339 ~~~~~~m~~~ 348 (488)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888887653
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=4.7e-12 Score=122.50 Aligned_cols=158 Identities=9% Similarity=-0.005 Sum_probs=70.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC------CCcHhHHH
Q 036287 87 MIDGLVRNGEMARALDLFREMQRD----NVRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKHRI------DLNHIVGG 155 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~~~~~~ 155 (488)
....+...|++++|+..|++..+. +-++ ...++..+...+...|+++.|...+....+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455556666666666655442 1011 123444555555555555555555555443210 00123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-----CCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHH
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE-----RDV----TTYNSLIAGLAMHGRSIEAVEMFREMINQ----GI-RPTKVTFV 221 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~ 221 (488)
.+...|...|++++|...|++..+ ++. .+++.+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 445555555555555555544332 111 23444455555555555555555544431 11 11223333
Q ss_pred HHHHHHhccCCHHHHHHHHHhcc
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.+...+...|++++|...++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444433
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=5.1e-11 Score=111.54 Aligned_cols=210 Identities=11% Similarity=0.081 Sum_probs=116.3
Q ss_pred HHHHHHHhhcC---CCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 036287 67 ENAFEVFSRVK---VKDTVCWTAMIDGLV-------RNGEM-------ARALDLFREMQRDNVRP-NEVTIVCVLSACSQ 128 (488)
Q Consensus 67 ~~A~~~f~~~~---~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 128 (488)
++|..+|++.. +.+...|..++..+. +.|++ ++|..+|++..+. +.| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 34555555443 234555555555544 23554 5666666666552 123 33455566666666
Q ss_pred cCchHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHH-HhcCChhHHHH
Q 036287 129 LGALELGRWIHSYMGKHRIDLNHI-VGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGL-AMHGRSIEAVE 203 (488)
Q Consensus 129 ~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~-~~~g~~~~A~~ 203 (488)
.|++++|..+|+.+++.. +.+.. +|..++..+.+.|++++|.++|++..+. +...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666532 11222 5666666666666666666666665531 223333222221 12466777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc--ChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 204 MFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP--QIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 204 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
+|++..+.. +-+...+..++..+...|++++|..+|+...+...++| ....|..++..+.+.|+.++|..+++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777666531 22445555666666666777777777776664322344 2456666667777777777777776665
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.3e-11 Score=119.48 Aligned_cols=225 Identities=8% Similarity=-0.047 Sum_probs=173.5
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC-----HHHHH
Q 036287 122 VLSACSQLGALELGRWIHSYMGKH----RIDL-NHIVGGALINMYSRCGDIDKALQVFEEMKE-----RD-----VTTYN 186 (488)
Q Consensus 122 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 186 (488)
....+...|++++|...+..+.+. +-++ ...++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778999999999999999774 2122 356788899999999999999999888653 22 35788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHhccccc---Cc-ccChhhHH
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQGI-RPT----KVTFVGVLNACSHGGLVDLGFEIFQSMTRDY---GI-EPQIEHYG 257 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~ 257 (488)
.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+....+-. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999875311 122 2467788899999999999999999887511 22 23367888
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHhCC---hhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 258 CIVDLLSRVGRPEEAYDFITNM-KI-----APD-HIMLGSLLSACKIHGK---LQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|...+++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999886 11 122 2335667777788888 67777777766 222444567889999
Q ss_pred HHhcCCChHHHHHHHHHHHh
Q 036287 328 AYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 328 ~~~~~g~~~~a~~~~~~m~~ 347 (488)
.|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=1.9e-11 Score=104.93 Aligned_cols=159 Identities=13% Similarity=0.073 Sum_probs=96.7
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
+.+|..+...|.+.|++++|++.|++.. +.+..+|..+...|.+.|++++|+..+.+..... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 3445555555555555555555555543 3355566666666666666666666666665542 33445555555666
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 203 (488)
...++++.+...+..+.+.. +.+..++..+..+|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666666666554 33455666666666666666666666666543 345566666666666677777777
Q ss_pred HHHHHHH
Q 036287 204 MFREMIN 210 (488)
Q Consensus 204 l~~~m~~ 210 (488)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666665
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=9e-13 Score=123.07 Aligned_cols=243 Identities=10% Similarity=0.004 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc------C
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRD-------NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH------R 146 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g 146 (488)
+..+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567889999999999999999999998762 22334566777788888888888888888887664 2
Q ss_pred C-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 036287 147 I-DLNHIVGGALINMYSRCGDIDKALQVFEEMKER-----------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ--- 211 (488)
Q Consensus 147 ~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 211 (488)
- +....++..+...|...|++++|...|++..+. ...++..+...|...|++++|+..|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223556677777888888888888777765421 2245666677777777777777777776653
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhccccc------CcccChhhHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036287 212 ---GIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDY------GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKI 281 (488)
Q Consensus 212 ---g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 281 (488)
+..|+ ..++..+..++...|++++|...++.+.+.. ...+.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 11222 2344555566666666666666666665310 00010000000
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 282 APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 282 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
....+..+...+...+.+..+...++......|....++..++.+|...|++++|.+.+++..+
T Consensus 243 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 --HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222222333444555555556665555565666666677777777777777776666543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=2.2e-12 Score=120.39 Aligned_cols=247 Identities=12% Similarity=0.057 Sum_probs=170.8
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--------C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVKV--------K---DTVCWTAMIDGLVRNGEMARALDLFREMQRD------N 111 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 111 (488)
...+|..+...|...|++++|..+|+++.. . ...+|..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 466888999999999999999999988753 2 3457889999999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc------CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC---
Q 036287 112 V-RPNEVTIVCVLSACSQLGALELGRWIHSYMGKH------RI-DLNHIVGGALINMYSRCGDIDKALQVFEEMKER--- 180 (488)
Q Consensus 112 ~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--- 180 (488)
- +....++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|...|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 223567788889999999999999999998765 22 234567888999999999999999999887542
Q ss_pred -----C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC
Q 036287 181 -----D---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ 252 (488)
Q Consensus 181 -----~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 252 (488)
+ ..++..+...|...|++++|...|+++.+.. |+. .+..+- .... .+...
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~----------------~~~~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENK----------------PIWMH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------C----------------CHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchH----------------HHHHH
Confidence 2 3578889999999999999999999998741 110 000000 0000 00111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
...+..+...+...+.+.+|...++.. ...| +..+|..+...+...|++++|...+++++++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 222333344445556666666666665 2233 3567888888888999999999999988876553
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=5.9e-10 Score=107.14 Aligned_cols=262 Identities=12% Similarity=0.004 Sum_probs=161.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCchHHHHHHHHHHHHcCC---CC--cHhHHHH
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEV----TIVCVLSACSQLGALELGRWIHSYMGKHRI---DL--NHIVGGA 156 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~ 156 (488)
.+...+...|++++|...+++........+.. ++..+...+...|+++.|...+....+... .+ ...+...
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566777777777777766643222222 344445566667777777777766654210 11 1223455
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C--CHHHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE-------R----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR--P--TKVTFV 221 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~ 221 (488)
+...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66777777888777777766542 1 1234555667777788888888888877653211 1 123455
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHH
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYG-----CIVDLLSRVGRPEEAYDFITNM-KIAPD-----HIMLGS 290 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ 290 (488)
.+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 666677778888888888877653211111111111 2334467888888888888877 22221 234566
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCC-----C-chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSA-----D-SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+...+...|++++|...++++.+..+. + ..++..+..+|...|+.++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888889999998888888764321 1 13666778888899999999998887754
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=2.5e-10 Score=110.18 Aligned_cols=301 Identities=11% Similarity=0.052 Sum_probs=166.7
Q ss_pred CCCCchhhHHHHHHHH--HhcCChHHHHHHHhhCCC-------CCceeeHHHHHHHH--HHcCC---HH---------HH
Q 036287 13 GLRSNRSTRLKLVELY--GKCGEFKDAMQLFDEMPE-------CNDVVASTVMINCY--VEHGL---VE---------NA 69 (488)
Q Consensus 13 g~~~~~~~~~~li~~y--~~~g~~~~A~~~~~~m~~-------~~~~~~~~~li~~~--~~~g~---~~---------~A 69 (488)
...|+..+.+.|-..| .+.+++++|.++++++.. ..++..|-.++..- .-.+. .+ ++
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 3567788888888888 789999999998876533 11233333333321 01111 11 33
Q ss_pred HHHHhhcCCC-C-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCchHHHHHHH
Q 036287 70 FEVFSRVKVK-D-T---VCWTAMIDGLVRNGEMARALDLFREMQRDNV-RPN----EVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 70 ~~~f~~~~~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
.+-.+....+ + . ..|......+...|++++|+..|++..+.-. .+| ..++..+...+...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3333222222 1 1 1233445566788888888888888765311 122 345666777778888888888877
Q ss_pred HHHHHcCC-----C-CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChhHHHHH
Q 036287 140 SYMGKHRI-----D-LNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 140 ~~~~~~g~-----~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l 204 (488)
....+... . ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77654311 1 1244566677777777777777777766543 12 23566667777777777777777
Q ss_pred HHHHHHc----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC---hhhHHHHHHHHHhcCC---hHHHHH
Q 036287 205 FREMINQ----GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ---IEHYGCIVDLLSRVGR---PEEAYD 274 (488)
Q Consensus 205 ~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~ 274 (488)
|++..+. +.+....++..+...+...|++++|...++...+...-.++ ...+..+...|...|+ +.+|+.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 7776651 11222445555666666666666666666665532111111 2234444444555555 555555
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 275 FITNMKIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 275 ~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
.+++.+..|+ ...+..+...|...|++++|...++++.+
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555433222 22333444455555555555555554443
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=2.3e-11 Score=121.08 Aligned_cols=207 Identities=10% Similarity=-0.026 Sum_probs=173.0
Q ss_pred CHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 036287 65 LVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEM-ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHS 140 (488)
Q Consensus 65 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 140 (488)
.+++|...++... ..+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777776543 34677888999999999999 99999999988864 3457888889999999999999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhc---------CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc--------CChhH
Q 036287 141 YMGKHRIDLNHIVGGALINMYSRC---------GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH--------GRSIE 200 (488)
Q Consensus 141 ~~~~~g~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~~~ 200 (488)
.+++.. |+...+..+..+|... |++++|.+.|++..+ .+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 998875 5568888899999998 999999999998764 4678899999999888 89999
Q ss_pred HHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHH
Q 036287 201 AVEMFREMINQGIRP----TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 201 A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
|+..|++..+. .| +...+..+..+|...|++++|.+.|+...+ +.|+ ...+..+..++...|++++|.+.
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999885 44 677888899999999999999999999874 3444 66788899999999999999988
Q ss_pred HHhC
Q 036287 276 ITNM 279 (488)
Q Consensus 276 ~~~m 279 (488)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 8776
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=1.9e-11 Score=126.88 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIV 260 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 260 (488)
.+|+.+...|.+.|++++|++.|++..+. .| +...+..+..+|.+.|++++|.+.|++..+ +.|+ ...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 34555555555555555555555555542 22 234455555555555555555555555542 2333 45566666
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHH
Q 036287 261 DLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEA 338 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 338 (488)
.+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|.++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666655 3444 3667777777777777888888888888887777777777888888888887777
Q ss_pred HHHHHHHHh
Q 036287 339 VQIRAKMKE 347 (488)
Q Consensus 339 ~~~~~~m~~ 347 (488)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=6.3e-11 Score=101.11 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 228 (488)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~----------- 76 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNV----------- 76 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH-----------
Confidence 3445556666666666666666666553 244555666666666666666666666655531 2223
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCChhHHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-K-IAPDHIMLGSLLSACKIHGKLQLGEQ 306 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~ 306 (488)
..+..+...|...|++++|.+.++++ . .+.+...|..+...+...|++++|..
T Consensus 77 -------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 77 -------------------------KVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp -------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 34444444555555555555555544 1 12245666666777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 307 IAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 307 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.++++.+..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777777777777777777777777777777776553
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=6.4e-10 Score=94.75 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=87.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036287 53 STVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQL 129 (488)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 129 (488)
|..+...+...|++++|...|+++. +.+..+|..+...+...|++++|+..++++.+.. +.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 3444444555555555555555443 1245556666666666666666666666665542 33455555555666666
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFR 206 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 206 (488)
|++++|.+.+..+.+.. +.+..++..+..+|...|++++|...|+++.+ .+...|..+...+...|++++|...++
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655543 33445555555566666666666666555442 234555555556666666666666666
Q ss_pred HHHH
Q 036287 207 EMIN 210 (488)
Q Consensus 207 ~m~~ 210 (488)
+..+
T Consensus 169 ~~~~ 172 (186)
T 3as5_A 169 KANE 172 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=3.8e-10 Score=100.41 Aligned_cols=205 Identities=8% Similarity=0.005 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHH
Q 036287 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLI 189 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 189 (488)
+.|+..+......+...|++++|...+..+++...+++...+..+..+|...|++++|.+.|++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3467888889999999999999999999999887546777777799999999999999999998765 3457889999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC---hhhHHH
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRPT-K-------VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ---IEHYGC 258 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 258 (488)
..|...|++++|+..|++..+. .|+ . ..+..+...+...|++++|...|+.+.+ +.|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 9999999999999999999885 343 3 3466777788889999999999999984 3554 567777
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
+...|...|+. .++++ .+ ..+...+.... ....+.+++|...+++++++.|.++.+...+....
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88888766543 22222 11 12344444333 33456789999999999999999987766665543
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=1.5e-09 Score=104.21 Aligned_cols=233 Identities=11% Similarity=0.004 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHc----CCC--C-c
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNV-RPNE----VTIVCVLSACSQLGALELGRWIHSYMGKH----RID--L-N 150 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~ 150 (488)
+++.+...+...|++++|...+++...... .++. .++..+...+...|++++|...+....+. +.+ | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 345555666666677766666666543110 1111 22344555566677777777666665442 211 2 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc--C------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE--R------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK-VTFV 221 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~ 221 (488)
..++..+...|...|++++|...+++..+ + ...++..+...+...|++++|...+++.......++. ..+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 33455566777777777777777766542 1 1345667777788888888888888877653211111 1111
Q ss_pred -----HHHHHHhccCCHHHHHHHHHhcccccCccc--ChhhHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH-H
Q 036287 222 -----GVLNACSHGGLVDLGFEIFQSMTRDYGIEP--QIEHYGCIVDLLSRVGRPEEAYDFITNM-------KIAPDH-I 286 (488)
Q Consensus 222 -----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~ 286 (488)
.....+...|++++|...+........-.+ ....+..+...+...|++++|...+++. +..++. .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 222346678888888888888764211110 1224567778888889999888888765 111122 2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCR 315 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 315 (488)
.+..+..++...|+.++|...+++..+..
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 55666777888899999999998887754
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=2.7e-10 Score=109.92 Aligned_cols=286 Identities=8% Similarity=-0.004 Sum_probs=195.8
Q ss_pred HHcCCHHHHHHHHhhcC--------CCCHHHHHHHHHHH--HHcCCHHHHH---------HHHHHHHHCCCCCCH-H---
Q 036287 61 VEHGLVENAFEVFSRVK--------VKDTVCWTAMIDGL--VRNGEMARAL---------DLFREMQRDNVRPNE-V--- 117 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~--~~~g~~~~A~---------~~~~~m~~~g~~p~~-~--- 117 (488)
.+.+++++|.++++++. ..++..|-.|+..- .-.+....+. ..++.+.....+.+. .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 78899999999988753 12344444444421 1112222222 555555432111111 1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHcC--CC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC-----H
Q 036287 118 TIVCVLSACSQLGALELGRWIHSYMGKHR--ID---LNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RD-----V 182 (488)
Q Consensus 118 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~ 182 (488)
.+......+...|++++|...+..+.+.. .+ ....++..+...|...|+++.|...+++..+ ++ .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 22334455678999999999999987642 11 1345778899999999999999998887653 12 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhccccc---CcccChh
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQ----GIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY---GIEPQIE 254 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~ 254 (488)
.+++.+...|...|++++|++.|++..+. +..+ ...++..+..+|...|++++|...+....+-. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 57888999999999999999999988763 1111 13466778888999999999999999887511 1122367
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHhCC---hhHHHHHHHHHHhcCCCCchhHHH
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM----KI--APD-HIMLGSLLSACKIHGK---LQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
++..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|...+++.. ..|.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHH
Confidence 7888999999999999999999886 21 222 3445555556666677 677777766521 22334457788
Q ss_pred HHHHHhcCCChHHHHHHHHHHHh
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++..|...|++++|.+.+++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998754
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=3.7e-10 Score=117.17 Aligned_cols=159 Identities=12% Similarity=0.100 Sum_probs=109.9
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
..+|+.|...|.+.|++++|++.|++.. +.+..+|+.|...|.+.|++++|+..|++.++.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4455566666666666666666665543 3356677777777777777777777777777643 23456777777777
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 203 (488)
...|++++|.+.++++++.. +.+...++.|..+|.+.|++++|++.|++..+ .+...|..+...|...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 77777777777777777664 34566777777777778888888777777653 356677777888888888888877
Q ss_pred HHHHHHH
Q 036287 204 MFREMIN 210 (488)
Q Consensus 204 l~~~m~~ 210 (488)
.+++..+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=4.8e-10 Score=99.71 Aligned_cols=188 Identities=13% Similarity=0.023 Sum_probs=131.7
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGV 223 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 223 (488)
.++..+..+...|...|++++|...|++..+ ++...|..+..++...|++++|+..|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3456777778888888888888888887653 56667777888888888888888888888874 34 34566677
Q ss_pred HHHHhccCCHHHHHHHHHhcccccCcccC-h-------hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHH
Q 036287 224 LNACSHGGLVDLGFEIFQSMTRDYGIEPQ-I-------EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD---HIMLGSL 291 (488)
Q Consensus 224 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l 291 (488)
..++...|++++|...++...+. .|+ . ..|..+...+...|++++|++.+++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 77788888888888888887743 333 3 45667777777888888888888776 55665 3556666
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...+.. .+...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666643 344556666666666555554433 33445679999999988764
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=4e-08 Score=100.89 Aligned_cols=344 Identities=7% Similarity=-0.022 Sum_probs=226.9
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCC---HHHHHHHHhhcC--
Q 036287 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGL---VENAFEVFSRVK-- 77 (488)
Q Consensus 5 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~-- 77 (488)
.++..+... +-|..+|..++..+.+.+.++.|..+|+++.. +.....|...+..-.+.|+ ++.+..+|++..
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 345555555 46888999999999999999999999998866 3456788888888888888 999999999865
Q ss_pred C---CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------hcCchHH
Q 036287 78 V---KDTVCWTAMIDGLVRNGEM--------ARALDLFREMQR-DNV-RPN-EVTIVCVLSACS---------QLGALEL 134 (488)
Q Consensus 78 ~---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~---------~~~~~~~ 134 (488)
. |++..|..-+.-..+.++. +...++|++.+. .|. .|+ ...|...+.-.. ..+.++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 3 7888888887766555443 334477777654 465 454 456666554332 2335677
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHH---HH----------HhcCCHHHHH------------------------------
Q 036287 135 GRWIHSYMGKHRIDLNHIVGGALIN---MY----------SRCGDIDKAL------------------------------ 171 (488)
Q Consensus 135 a~~~~~~~~~~g~~~~~~~~~~li~---~y----------~~~g~~~~A~------------------------------ 171 (488)
+..+|..++......-..+|..... .+ -...+++.|.
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 7788887775322211222211100 00 0000111122
Q ss_pred -------------------------------------HHHHhccc---CCHHHHHHHHHHHHhcCChhHHH-HHHHHHHH
Q 036287 172 -------------------------------------QVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAV-EMFREMIN 210 (488)
Q Consensus 172 -------------------------------------~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~ 210 (488)
.+|++... .+...|-..+.-+...|+.++|. ++|++...
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 22333221 23445666666667788888896 99999887
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccC--c------ccC------------hhhHHHHHHHHHhcCChH
Q 036287 211 QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG--I------EPQ------------IEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 211 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~------~p~------------~~~~~~li~~~~~~g~~~ 270 (488)
. .+.+...+...+......|+++.|.++|+.+..... + .|+ ..+|...+....+.|.++
T Consensus 373 ~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 4 444555566677777888999999999999875210 0 131 346788888888899999
Q ss_pred HHHHHHHhC-CC--CCCHHHHHHHHHHHHHh-CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 271 EAYDFITNM-KI--APDHIMLGSLLSACKIH-GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 271 ~A~~~~~~m-~~--~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.|..+|.+. .. .+...+|...+..-... ++.+.|.++|+.+++..|.++..+...+......|+.+.|..+|+...
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999887 22 12233443322222233 458999999999999888888888888888888999999999999887
Q ss_pred hCCC
Q 036287 347 EAGV 350 (488)
Q Consensus 347 ~~g~ 350 (488)
....
T Consensus 532 ~~~~ 535 (679)
T 4e6h_A 532 DKIS 535 (679)
T ss_dssp TTSS
T ss_pred HhcC
Confidence 6543
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=2.1e-10 Score=105.04 Aligned_cols=152 Identities=10% Similarity=0.037 Sum_probs=80.4
Q ss_pred HcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc------CC-CCcHhHHHHHH
Q 036287 93 RNGEMARALDLFREMQR-------DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH------RI-DLNHIVGGALI 158 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li 158 (488)
..|++++|+.+|++..+ ...+....++..+...+...|++++|...+..+++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34556666655555543 111223455666666777777777777777766543 11 22344556666
Q ss_pred HHHHhcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCC-HHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKE-------R----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ------GIRPT-KVTF 220 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~ 220 (488)
..|...|++++|...|++..+ + ...++..+...|...|++++|+..|++..+. +..|+ ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 666666666666666655432 1 1234555555566666666666666655542 10111 2334
Q ss_pred HHHHHHHhccCCHHHHHHHHHhcc
Q 036287 221 VGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 221 ~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
..+..++...|++++|..+++.+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444555555555555554444
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=1.1e-09 Score=101.62 Aligned_cols=169 Identities=14% Similarity=-0.006 Sum_probs=85.9
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCchHHHHHHH
Q 036287 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD----NVRPN-EVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 65 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
++++|...|++. ...|...|++++|+..|.+.... |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666665543 66677777777777777766542 21111 345666666666777777777666
Q ss_pred HHHHHcCC---CC--cHhHHHHHHHHHHhc-CCHHHHHHHHHhcccC-----C----HHHHHHHHHHHHhcCChhHHHHH
Q 036287 140 SYMGKHRI---DL--NHIVGGALINMYSRC-GDIDKALQVFEEMKER-----D----VTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 140 ~~~~~~g~---~~--~~~~~~~li~~y~~~-g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l 204 (488)
...++... .+ ...+++.+..+|... |++++|...|++..+- + ..+++.+...|.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66654310 00 023444555555553 5555555555544320 1 12344455555555555555555
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 205 FREMINQGIRPTK------VTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 205 ~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
|++..+....... ..+..+..++...|++++|...|+...
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555543211111 023334444444455555555555444
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=1.3e-09 Score=99.80 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=106.6
Q ss_pred HHHHHHhhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCchHHHH
Q 036287 68 NAFEVFSRVKVK----DTVCWTAMIDGLVRNGEMARALDLFREMQRD------NVRP-NEVTIVCVLSACSQLGALELGR 136 (488)
Q Consensus 68 ~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~ 136 (488)
+|++++++...+ ...+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 444445444322 3457888888888889999888888887653 2122 3457777888888889999998
Q ss_pred HHHHHHHHc------C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------C---HHHHHHHHHHHHhcCCh
Q 036287 137 WIHSYMGKH------R-IDLNHIVGGALINMYSRCGDIDKALQVFEEMKER--------D---VTTYNSLIAGLAMHGRS 198 (488)
Q Consensus 137 ~~~~~~~~~------g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~ 198 (488)
..+..+.+. . .+....++..+...|...|++++|...|++..+. + ..++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 888887764 1 1234667788889999999999999988876532 2 35788888999999999
Q ss_pred hHHHHHHHHHHH
Q 036287 199 IEAVEMFREMIN 210 (488)
Q Consensus 199 ~~A~~l~~~m~~ 210 (488)
++|+..|++..+
T Consensus 186 ~~A~~~~~~~l~ 197 (283)
T 3edt_B 186 QDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 87
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.11 E-value=1e-07 Score=97.87 Aligned_cols=343 Identities=10% Similarity=-0.028 Sum_probs=222.0
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCC---hHHHHHHHhhCCC-C---CceeeHHHHHHHHHHcCCH--------
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGE---FKDAMQLFDEMPE-C---NDVVASTVMINCYVEHGLV-------- 66 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~~~~m~~-~---~~~~~~~~li~~~~~~g~~-------- 66 (488)
++.+++.++.. ++.+...|...+..-.+.|. ++.+..+|++... . +++..|...+.-..+.++.
T Consensus 85 aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r 163 (679)
T 4e6h_A 85 VYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEAR 163 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhH
Confidence 45677777665 45666677777777777777 8888888877544 2 4466777766655554443
Q ss_pred HHHHHHHhhcC------CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHCCCCCC--HHHHH---HHHHH
Q 036287 67 ENAFEVFSRVK------VK-DTVCWTAMIDGLV---------RNGEMARALDLFREMQRDNVRPN--EVTIV---CVLSA 125 (488)
Q Consensus 67 ~~A~~~f~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~--~~t~~---~ll~~ 125 (488)
+...++|+... .+ +...|...+.-.. .+++.+.+..+|++.+.. |.. ..+|. ..-..
T Consensus 164 ~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~ 241 (679)
T 4e6h_A 164 NIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQD 241 (679)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHh
Confidence 23346666521 22 3456766665432 233456667777776642 211 11211 10000
Q ss_pred -----------------------H----------------------------------------------Hhc-C-----
Q 036287 126 -----------------------C----------------------------------------------SQL-G----- 130 (488)
Q Consensus 126 -----------------------~----------------------------------------------~~~-~----- 130 (488)
+ .+. +
T Consensus 242 ~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~ 321 (679)
T 4e6h_A 242 VNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSD 321 (679)
T ss_dssp HCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCH
T ss_pred cCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccc
Confidence 0 000 0
Q ss_pred --chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHH
Q 036287 131 --ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL-QVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 131 --~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
..+.+..+|++++..- +.+..+|-..+..+...|+.++|. ++|++... .+...|-..+...-+.|++++|.++
T Consensus 322 ~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 322 DLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 0112233444444332 334555556666667788888886 99988764 4566788888889999999999999
Q ss_pred HHHHHHcC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHH
Q 036287 205 FREMINQG---------IRPT------------KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLL 263 (488)
Q Consensus 205 ~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 263 (488)
|+++.+.. -.|+ ...|...+....+.|..+.|..+|..+.+. .-.+....|...+.+-
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHH
Confidence 99998641 0132 235667777777889999999999999853 1122344554444444
Q ss_pred HhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---CchhHHHHHHHHhcCCChHH
Q 036287 264 SRVG-RPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA---DSGTYVLLSNAYASSGKWKE 337 (488)
Q Consensus 264 ~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~ 337 (488)
.+.+ +.+.|.++|+.. ...-+...|...+......|+.+.|..+|+++++..|+ ....|...+..-...|+.+.
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4554 589999999887 33335777888888888899999999999999998763 34577788888889999999
Q ss_pred HHHHHHHHHhCC
Q 036287 338 AVQIRAKMKEAG 349 (488)
Q Consensus 338 a~~~~~~m~~~g 349 (488)
+.++.+++.+.-
T Consensus 560 ~~~v~~R~~~~~ 571 (679)
T 4e6h_A 560 VRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.7e-08 Score=92.46 Aligned_cols=173 Identities=12% Similarity=0.063 Sum_probs=95.6
Q ss_pred HHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 170 ALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 170 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
|.+.|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555554432 344444555566666666666666666655443212 333444555666666666666666666653
Q ss_pred ccCccc-----ChhhHHHHHHHHH--h--cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc-
Q 036287 246 DYGIEP-----QIEHYGCIVDLLS--R--VGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC- 314 (488)
Q Consensus 246 ~~~~~p-----~~~~~~~li~~~~--~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 314 (488)
..| +..+...|+.++. . .++..+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 244 2333344443322 2 23666777777666 33344223333444666667777777777765554
Q ss_pred ---------CCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 315 ---------RSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 315 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+|.++.++..++..+...|+ +|.+++.++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 36666666666655556665 66666666665
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=1.1e-08 Score=94.82 Aligned_cols=212 Identities=10% Similarity=-0.029 Sum_probs=150.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHhcCCHHHH
Q 036287 96 EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH----RIDLN-HIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 96 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~y~~~g~~~~A 170 (488)
++++|...|.+. ...+...|++++|...+....+. |-+++ ..+++.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888876 34567789999999888887654 32222 56788899999999999999
Q ss_pred HHHHHhccc-----CC----HHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHH
Q 036287 171 LQVFEEMKE-----RD----VTTYNSLIAGLAMH-GRSIEAVEMFREMINQGIR-PT----KVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 171 ~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~ 235 (488)
...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 998887664 12 35788888889986 9999999999988763111 01 3467788888999999999
Q ss_pred HHHHHHhcccccCcccCh-----hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--HhCCh
Q 036287 236 GFEIFQSMTRDYGIEPQI-----EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHI------MLGSLLSACK--IHGKL 301 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~g~~ 301 (488)
|...|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999887531111111 15677888899999999999999887 5555422 2444555554 34567
Q ss_pred hHHHHHHHHHHhcCCCCchhH
Q 036287 302 QLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 302 ~~a~~~~~~~~~~~p~~~~~~ 322 (488)
++|...++++..++|.....+
T Consensus 257 ~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHhccCCccHHHHHHHH
Confidence 888888877777777554333
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=1.2e-08 Score=93.29 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 036287 100 ALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI-DLNHIVGGALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 100 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
|+..|++....+ +++..++..+..++...|++++|.+++...+..+. .-+...+..++.+|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555444433 33444444444555555555555555555444332 1233444444455555555555555554443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=8.3e-09 Score=93.76 Aligned_cols=205 Identities=10% Similarity=0.017 Sum_probs=141.7
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-HHHH
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-D---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPT-KVTF 220 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~ 220 (488)
.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3456666777888888888888888888765 2 3 56777788888888888888888888887522 112 3345
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHhcccccCcccCh-hhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 036287 221 VGVLNACSH--------GGLVDLGFEIFQSMTRDYGIEPQI-EHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSL 291 (488)
Q Consensus 221 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 291 (488)
..+..++.. .|++++|...|+.+.+. .|+. .....+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 556666666 78888888888887753 3432 2222221111110000 1225667
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHHHHHHhcC----------CChHHHHHHHHHHHhCCCccCCceeE
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLLSNAYASS----------GKWKEAVQIRAKMKEAGVQKEPGCSS 358 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~ 358 (488)
...+...|+++.|...++++++..|.+ +.++..++.+|... |++++|...++++.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 788999999999999999999998874 34788888999876 89999999999987642
Q ss_pred EEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHH
Q 036287 359 IEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKL 394 (488)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 394 (488)
..++...++...+.++...+.+
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 1345666677766666666553
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=1.6e-08 Score=80.88 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
+|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..++..+.+.+ +.+..++..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46666777777777777777777776643 3355666666666777777777777777766654 334556666677777
Q ss_pred hcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 163 RCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
..|++++|.+.|+++.+ .+...|..+...+...|++++|...|+++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 77777777777766543 3455666677777777777777777777665
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=2.3e-08 Score=92.30 Aligned_cols=176 Identities=7% Similarity=-0.000 Sum_probs=140.7
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccc
Q 036287 167 IDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRD 246 (488)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 246 (488)
.+.....+......+...+..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 4445555555555566677788888999999999999999998852 33556777888899999999999999999874
Q ss_pred cCcccChhhHHHH-HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC--chh
Q 036287 247 YGIEPQIEHYGCI-VDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD--SGT 321 (488)
Q Consensus 247 ~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 321 (488)
..|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|.+ ..+
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 35664433332 33466778888888888877 4445 58889999999999999999999999999999987 789
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 322 YVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+..|+.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887654
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=9.9e-09 Score=93.26 Aligned_cols=186 Identities=11% Similarity=-0.007 Sum_probs=138.5
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccc--C---C-HH
Q 036287 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN---HIVGGALINMYSRCGDIDKALQVFEEMKE--R---D-VT 183 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~-~~ 183 (488)
+.+...+......+.+.|++++|...+..+++.. +.+ ..++..+..+|.+.|++++|...|++..+ | . ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456778888889999999999999999999875 223 66788899999999999999999999875 2 2 35
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh
Q 036287 184 TYNSLIAGLAM--------HGRSIEAVEMFREMINQGIRPTKV-TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 184 ~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
++..+..++.. .|++++|+..|++..+. .|+.. ....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67788888888 99999999999999985 34432 22111 111111100 012
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHh----------CChhHHHHHHHHHHhcCCCCc
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIH----------GKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 319 (488)
.+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3556778888999999999988887 33333 45677777777765 888999999999999999886
Q ss_pred h
Q 036287 320 G 320 (488)
Q Consensus 320 ~ 320 (488)
.
T Consensus 230 ~ 230 (261)
T 3qky_A 230 L 230 (261)
T ss_dssp H
T ss_pred H
Confidence 4
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=4.4e-08 Score=86.83 Aligned_cols=180 Identities=13% Similarity=0.008 Sum_probs=121.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE--RD----VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV----TF 220 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 220 (488)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 44555677788889999999999998774 32 2467788888999999999999999988753 3321 33
Q ss_pred HHHHHHHhc------------------cCCHHHHHHHHHhcccccCcccCh-hhHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036287 221 VGVLNACSH------------------GGLVDLGFEIFQSMTRDYGIEPQI-EHYGCIVDLLSRVGRPEEAYDFITNMKI 281 (488)
Q Consensus 221 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 281 (488)
..+..++.. .|+.++|...|+.+.+. .|+. ..+.++.... .+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH--------
Confidence 333444432 35566666666666542 2321 1111111000 000000
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc---hhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 282 APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS---GTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 282 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
......+...+...|+++.|...++++++..|.++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113456678899999999999999999998875 5688999999999999999999999887654
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=5.9e-10 Score=92.16 Aligned_cols=110 Identities=8% Similarity=0.029 Sum_probs=73.2
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH 298 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 298 (488)
.+...|...|++++|.+.|++..+ +.| +...|..+..+|.+.|++++|+..|++. .+.| +...|..+...+...
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344444555555555555555442 223 2455666666666677777777666665 4445 467788888888888
Q ss_pred CChhHHHHH-HHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 299 GKLQLGEQI-AKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 299 g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
|+.++|.+. ++++++++|.++.+|......+...|+
T Consensus 113 ~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888766554 588999999998888888888877775
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.1e-08 Score=81.74 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLL 263 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 263 (488)
+|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45556666666666666666666665532 223334444444444455555555555444321
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 264 SRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.+.+...|..+...+...|++++|...++++.+..|.+..++..++.+|...|++++|.+.++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 112345566666666667777777777777777777776777777777777777777777777
Q ss_pred HHHhC
Q 036287 344 KMKEA 348 (488)
Q Consensus 344 ~m~~~ 348 (488)
++.+.
T Consensus 128 ~~~~~ 132 (136)
T 2fo7_A 128 KALEL 132 (136)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 76553
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=3.3e-09 Score=110.36 Aligned_cols=168 Identities=10% Similarity=-0.031 Sum_probs=134.3
Q ss_pred HhcCCHHHHHHHHHhcc-----------cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 162 SRCGDIDKALQVFEEMK-----------ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67888999998888876 2456788888888899999999999999888752 33556777788888889
Q ss_pred CCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHH
Q 036287 231 GLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQI 307 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 307 (488)
|++++|...|+++.+ +.| +...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999988874 345 46778888888999999998 8888877 4445 477888888899999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 308 AKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 308 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
++++++++|.+..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999888888888888877665
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=6.7e-08 Score=100.49 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=97.8
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 92 VRNGEMARALDLFREMQ--------RDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777776 321 3345566666666667777777777776666654 3355566666666666
Q ss_pred cCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 164 CGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
.|++++|.+.|++..+ .+...|..+...|.+.|++++ ++.|++..+.+ +.+...+..+..++...|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666543 244566666666666666666 66666666532 223345555555566666666666666
Q ss_pred HhcccccCcccC-hhhHHHHHHHHH
Q 036287 241 QSMTRDYGIEPQ-IEHYGCIVDLLS 264 (488)
Q Consensus 241 ~~~~~~~~~~p~-~~~~~~li~~~~ 264 (488)
+++.+ +.|+ ...+..+..+|.
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC
T ss_pred Hhhcc---cCcccHHHHHHHHHHHH
Confidence 65552 2343 334444444443
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=4.7e-08 Score=85.49 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV-TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
.+-.....+...|++++|+..|++..+. .|+.. .+.. . ... ............+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~--------------~~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD--------------KNSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC--------------TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc--------------chhhhhHHHHHHHHHHH
Confidence 3344455666777777777777777664 23322 2211 0 000 00011122233466666
Q ss_pred HhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHH
Q 036287 162 SRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL--VDLG 236 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a 236 (488)
.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +.+..++..+..++...|. .+.+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 667777777777666543 355666666777777777777777777766632 2234455555555544332 3334
Q ss_pred HHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036287 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLL 292 (488)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 292 (488)
...+.... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44444443 11222223333444555567777777777665 5666655444433
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=2.6e-08 Score=92.99 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=146.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036287 94 NGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQV 173 (488)
Q Consensus 94 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 173 (488)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456777777777665531 111 0 01135666666665543 4456677787777777
Q ss_pred HHhccc-----CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 036287 174 FEEMKE-----RD----VTTYNSLIAGLAMHGRSIEAVEMFREMINQG---IRPT--KVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 174 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776543 11 3467788888888999999999988876531 1121 3466777788888 999999999
Q ss_pred HHhcccccCcc---c-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhCChhHHHHH
Q 036287 240 FQSMTRDYGIE---P-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KI---APD----HIMLGSLLSACKIHGKLQLGEQI 307 (488)
Q Consensus 240 ~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 307 (488)
|++..+-..-. + ...++..+...|.+.|++++|++.+++. .+ .++ ...+..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98877421111 1 1467888899999999999999999876 11 112 23566677777888999999999
Q ss_pred HHHHHhcCCCCchh-----HHHHHHHHhcCCChHHHHH
Q 036287 308 AKRLLDCRSADSGT-----YVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 308 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 340 (488)
+++.+ ..|....+ ...++.+| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88765432 33455555 5677666555
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=5.3e-08 Score=85.14 Aligned_cols=130 Identities=11% Similarity=-0.004 Sum_probs=89.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++.. +.+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7788888888888888888887754 3456777788888888888888888888888765 4456777777777765543
Q ss_pred --HHHHHHHHHhcccCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036287 167 --IDKALQVFEEMKERDVT--TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220 (488)
Q Consensus 167 --~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 220 (488)
...+...++....++.. .|..+..++...|++++|+..|++..+ ..|+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~ 193 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHH
Confidence 44556666666665543 334445556667788888888888776 45665433
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=1.6e-07 Score=82.37 Aligned_cols=161 Identities=8% Similarity=-0.095 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHhcccccCcccChhhH
Q 036287 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG----LVDLGFEIFQSMTRDYGIEPQIEHY 256 (488)
Q Consensus 181 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (488)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|..+|....+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44444444444444555555555555554432 23333444444444 3 455555555555421 233444
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 257 GCIVDLLSR----VGRPEEAYDFITNM-KIAPD---HIMLGSLLSACKI----HGKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 257 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 455555544 55666666666665 33332 5666666666666 66788888888888777 445567777
Q ss_pred HHHHHhcC-C-----ChHHHHHHHHHHHhCCC
Q 036287 325 LSNAYASS-G-----KWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 325 l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 350 (488)
|..+|... | ++++|.+.+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87777654 3 78888888887776654
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=6.4e-08 Score=82.08 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 036287 53 STVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA-CSQ 128 (488)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 128 (488)
+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 3444455555555555555555544 2245556666666666666666666666654432 233222211111 111
Q ss_pred cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-----HHHHHHHHHHHHhcCChhHHHH
Q 036287 129 LGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD-----VTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 129 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~ 203 (488)
.+....+...++..++.. +.+...+..+...|...|++++|...|+++.+.+ ...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 111223455555555543 3345566666666666777777776666655421 3466666667777777777777
Q ss_pred HHHHHH
Q 036287 204 MFREMI 209 (488)
Q Consensus 204 l~~~m~ 209 (488)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766554
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=4.1e-08 Score=83.29 Aligned_cols=77 Identities=6% Similarity=0.014 Sum_probs=58.6
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC--chhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 271 EAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD--SGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+|...+++. ...| +...+..+...+...|++++|...++++++.+|.. +..+..++.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 345555554 3344 47778888888888889999999998888888754 5588888888888899888888887664
Q ss_pred h
Q 036287 347 E 347 (488)
Q Consensus 347 ~ 347 (488)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=4.3e-08 Score=86.02 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----chHHHHHHHHHHHHcCCCCcHhHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG----ALELGRWIHSYMGKHRIDLNHIVGG 155 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~ 155 (488)
+..++..|...|...+++++|+..|++..+.| +...+..+...+.. + +.++|..+++...+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444444444444555555555555544433 33334444444443 3 4555555555544433 333444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcccCC-----HHHHHHHHHHHHh----cCChhHHHHHHHHHHH
Q 036287 156 ALINMYSR----CGDIDKALQVFEEMKERD-----VTTYNSLIAGLAM----HGRSIEAVEMFREMIN 210 (488)
Q Consensus 156 ~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 210 (488)
.|..+|.. .+++++|...|++..+.+ +.++..|...|.. .+++++|+..|++..+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 44444444 445555555555544321 3444455555544 4455555555555544
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=1.9e-07 Score=86.16 Aligned_cols=162 Identities=9% Similarity=-0.007 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHH-HHH
Q 036287 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTTYNS-LIA 190 (488)
Q Consensus 114 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~ 190 (488)
.+...+..+...+...|++++|...++.+.+.. +.+...+..|..+|.+.|++++|...|+++.. |+...... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 344555566666667777777777777776654 34556666777777777777777777777654 43332222 222
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChH
Q 036287 191 GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
.+.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3556666677777777766642 334455556666666777777777777666643111112445556666666666666
Q ss_pred HHHHHHH
Q 036287 271 EAYDFIT 277 (488)
Q Consensus 271 ~A~~~~~ 277 (488)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 6555544
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=1.6e-08 Score=83.50 Aligned_cols=138 Identities=7% Similarity=-0.061 Sum_probs=63.8
Q ss_pred HHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHH
Q 036287 26 ELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 26 ~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 100 (488)
.+|...|++++|...+......+ +...+-.+...|.+.|++++|++.|++.. +.+..+|..+...|.+.|++++|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 34444555555555555444321 33444455555555555555555555432 22444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH-HHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 101 LDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRW-IHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 101 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
+..|++..+.. +-+..++..+...+.+.|+.+++.+ +++.+++.. |.+..++......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 55555555432 2234444455555555555443332 234444432 223344444444443333
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=4.9e-08 Score=99.45 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 164 CGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998775 457889999999999999999999999999852 335677888889999999999999999
Q ss_pred HhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---CChhHHHHHHHHHHhc
Q 036287 241 QSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH---GKLQLGEQIAKRLLDC 314 (488)
Q Consensus 241 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 314 (488)
++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 998853 44 4778899999999999999999999987 4444 578889999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 036287 315 RSADSGTYVLLS 326 (488)
Q Consensus 315 ~p~~~~~~~~l~ 326 (488)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888877665
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=9.2e-08 Score=97.43 Aligned_cols=147 Identities=8% Similarity=-0.044 Sum_probs=108.5
Q ss_pred cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHH
Q 036287 129 LGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMF 205 (488)
Q Consensus 129 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 205 (488)
.|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478889999999888764 44678888999999999999999999998765 45778999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhc---CChHHHHHHHHhC
Q 036287 206 REMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV---GRPEEAYDFITNM 279 (488)
Q Consensus 206 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 279 (488)
++..+.. +.+...+..+..++...|++++|.+.++...+. .+.+...+..+...|... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998852 345677888889999999999999999998753 123467888899999999 9999999999887
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=4.3e-08 Score=80.74 Aligned_cols=102 Identities=12% Similarity=-0.001 Sum_probs=91.6
Q ss_pred CcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 248 GIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 248 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++++|.++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44554 567888889999999999999999988 4455 58899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
++.+|...|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=6e-06 Score=76.13 Aligned_cols=228 Identities=8% Similarity=0.014 Sum_probs=146.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hhc--
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG--ALELGRWIHSYMGKHRIDLNHIVGGALINMY----SRC-- 164 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~-- 164 (488)
+....++|++++.+++..+ +-+...|+.--.++...+ +++++.+.+..++... +.+..+|+.--..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 3344468888888888753 234555666666777777 8888888888887765 44555565544444 444
Q ss_pred -CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------
Q 036287 165 -GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSI--EAVEMFREMINQGIRPTKVTFVGVLNACSHGGL------ 232 (488)
Q Consensus 165 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 232 (488)
+++++++++++++.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...+..-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 778888888888774 57778888888888888887 8899999888864 3345555544444455554
Q ss_pred HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHhCChhHHHH
Q 036287 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE-AYDFITNM-KI----APDHIMLGSLLSACKIHGKLQLGEQ 306 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~ 306 (488)
++++++.+..+... -+-|...|+-+-..+.+.|+..+ +..+..+. .. ..+...+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66777777666632 23345666666666666666433 44455544 11 2245666666666666777777777
Q ss_pred HHHHHHh-cCCCCchhHHHH
Q 036287 307 IAKRLLD-CRSADSGTYVLL 325 (488)
Q Consensus 307 ~~~~~~~-~~p~~~~~~~~l 325 (488)
+++.+.+ .+|.....|...
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHH
Confidence 7777765 566665554433
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=2.3e-07 Score=82.10 Aligned_cols=184 Identities=12% Similarity=-0.012 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-H---HHHH
Q 036287 115 NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDL--NHIVGGALINMYSRCGDIDKALQVFEEMKE--RD-V---TTYN 186 (488)
Q Consensus 115 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~ 186 (488)
+...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45566677788999999999999999999864321 235777889999999999999999999874 32 2 2455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHhccccc
Q 036287 187 SLIAGLAM------------------HGRSIEAVEMFREMINQGIRPTKVT-FVGVLNACSHGGLVDLGFEIFQSMTRDY 247 (488)
Q Consensus 187 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 247 (488)
.+..++.. .|++++|+..|+++.+. .|+... ...... . ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH----
Confidence 55555554 57899999999999984 455432 211111 0 0001111
Q ss_pred CcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 248 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
......+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++.+....|.+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 112235677889999999999999987 33343 35688889999999999999999999988888764
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=7.6e-07 Score=82.23 Aligned_cols=165 Identities=7% Similarity=-0.032 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHhcccccC--cccC--h
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK-----VTFVGVLNACSHGGLVDLGFEIFQSMTRDYG--IEPQ--I 253 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 253 (488)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+....+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788889999999888887764322111 1233455566778899999998887763211 1111 4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------C
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM----KIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------D 318 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 318 (488)
.+|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++++..+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888899999999999999888775 11222 258888999999999999999999999875321 1
Q ss_pred chhHHHHHHHHhcCCChHHH-HHHHHHHHh
Q 036287 319 SGTYVLLSNAYASSGKWKEA-VQIRAKMKE 347 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 347 (488)
..+|..++.+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 46788999999999999999 777776643
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=7.1e-07 Score=77.89 Aligned_cols=141 Identities=12% Similarity=-0.103 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchH
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALE 133 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 133 (488)
..+...+...|++++|...|++...++..+|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3444555566666666666666655566666666666666666666666666665543 334455555555666666666
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036287 134 LGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQ 211 (488)
Q Consensus 134 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 211 (488)
+|...++.+.+......... |...|. .........|..+...|...|++++|...|++..+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~-------~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID-------YKILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE-------CGGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCccHHH-------HHHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666665555321110000 000000 000012356666777777777777777777777763
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=4.8e-07 Score=78.99 Aligned_cols=125 Identities=13% Similarity=-0.010 Sum_probs=101.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 297 (488)
+..+...+...|++++|...|.... .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3345556667788888888887764 456677888888888888888888888776 3333 57788889999999
Q ss_pred hCChhHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADS----------------GTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.|++++|...++++++..|.+. .++..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888776 889999999999999999999999987653
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=4.3e-06 Score=77.10 Aligned_cols=160 Identities=8% Similarity=-0.051 Sum_probs=113.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHH
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQG-IRPTKV----TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGC 258 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 258 (488)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+..+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122211 2234556666777888888888877642111222 235788
Q ss_pred HHHHHHhcCChHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------CchhHH
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-----KI---APD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------DSGTYV 323 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~ 323 (488)
+...|...|++++|...++++ .. .+. ..++..+...|...|++++|...++++++..+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888887775 11 111 347888899999999999999999999875422 256888
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHh
Q 036287 324 LLSNAYASSGK-WKEAVQIRAKMKE 347 (488)
Q Consensus 324 ~l~~~~~~~g~-~~~a~~~~~~m~~ 347 (488)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999887753
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.68 E-value=5e-06 Score=76.65 Aligned_cols=212 Identities=11% Similarity=0.064 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHhccc---CCHHHHHHHHHHH----Hhc---CChh
Q 036287 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG--DIDKALQVFEEMKE---RDVTTYNSLIAGL----AMH---GRSI 199 (488)
Q Consensus 132 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~ 199 (488)
.++|.+....++... +.+..+|+.--......| +++++++.++.+.. .+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 468888888888876 556778888888888888 99999999999875 4567788766655 555 7899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHhcccccCcccChhhHHHHHHHHHhcCC------hHH
Q 036287 200 EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVD--LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR------PEE 271 (488)
Q Consensus 200 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 271 (488)
+++.+++++.+.. +-|...+..-.-.+.+.|.++ +++++++.+.+. -+-|...|+.-...+.+.|. +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999999863 446666666666666677777 999999999853 23345666666666666666 888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChh-HHHHHHHHHHhcC---CCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 272 AYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQ-LGEQIAKRLLDCR---SADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 272 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
+++.++++ ...| |...|+.+...+...|+.. ....+..++.+.+ |.++.++..++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99988877 4444 6889999888888888744 4666788777766 788889999999999999999999999998
Q ss_pred Hh
Q 036287 346 KE 347 (488)
Q Consensus 346 ~~ 347 (488)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=4.9e-07 Score=84.19 Aligned_cols=170 Identities=8% Similarity=-0.048 Sum_probs=94.8
Q ss_pred cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCchHHHHH
Q 036287 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD----NVRP-NEVTIVCVLSACSQLGALELGRW 137 (488)
Q Consensus 63 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~ 137 (488)
.+++++|...|++ ....|...|++++|+..|.+.... +-++ -..+|..+...+...|++++|..
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3566666666554 355677778888888777766542 1111 12356666667777777777777
Q ss_pred HHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----C----HHHHHHHHHHHHhcCChhHHHH
Q 036287 138 IHSYMGKH----RIDL-NHIVGGALINMYSRCGDIDKALQVFEEMKER-----D----VTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 138 ~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~ 203 (488)
.+...++. |-.. ...++..+..+|.. |++++|...|++..+- + ..+++.+...|.+.|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77666543 1111 13455566666666 7777777766665421 1 2456666666666777777777
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 204 MFREMINQ----GIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 204 l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.|++..+. +..+. ..++..+..++...|++++|...|+...
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666542 11111 1133333444444455555555555544
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.66 E-value=2.1e-07 Score=74.04 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=73.9
Q ss_pred cccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 249 IEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 249 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 355666777777788888888777776 3344 467777777778888888888888888888888887788888
Q ss_pred HHHHhcCCChHHHHHHHHHHHh
Q 036287 326 SNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+.+|...|++++|.+.|++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877765
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.65 E-value=1.7e-06 Score=79.94 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=54.2
Q ss_pred HHHHHhcCchHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCCHHHHHHHHHhccc------CC----HHHHHH
Q 036287 123 LSACSQLGALELGRWIHSYMGKHRID-LN----HIVGGALINMYSRCGDIDKALQVFEEMKE------RD----VTTYNS 187 (488)
Q Consensus 123 l~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~----~~~~~~ 187 (488)
...+...+++++|...+..+.+.... ++ ..+++.+...|...|++++|...|+++.+ .+ ..++..
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n 201 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 33334444455555555544442111 11 12344455555555555555555544431 11 124445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCC-HHHHHHHHHhcc
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQ----GIRPT-KVTFVGVLNACSHGGL-VDLGFEIFQSMT 244 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~-~~~a~~~~~~~~ 244 (488)
+...|...|++++|+..+++..+. +..+. ..++..+..++...|+ .++|.+.++...
T Consensus 202 lg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 555555555555555555554431 11111 3344455555555552 355555554443
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=1.3e-07 Score=77.63 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|.++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3567777888999999999999999987 4444 6888999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHhC
Q 036287 330 ASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 330 ~~~g~~~~a~~~~~~m~~~ 348 (488)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=1e-07 Score=87.59 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=37.8
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC-CChHHHHHHHHHHHhC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS-GKWKEAVQIRAKMKEA 348 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 348 (488)
.|+.++|.+.++++++.+|.+......+...+.+. +.+++|.++|.++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57788888888888888887766666666666665 6678888888877553
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=4.1e-07 Score=78.57 Aligned_cols=149 Identities=12% Similarity=-0.013 Sum_probs=83.9
Q ss_pred HcCCHHHHHH---HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCchH
Q 036287 62 EHGLVENAFE---VFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQR----DNVRP-NEVTIVCVLSACSQLGALE 133 (488)
Q Consensus 62 ~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~ 133 (488)
..|++++|.+ ++..-+.....+++.+...|...|++++|+..|++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 54443333455677777777777777777777776654 11111 2344555566666677777
Q ss_pred HHHHHHHHHHHc----CCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCH----HHHHHHHHHHHhcCCh
Q 036287 134 LGRWIHSYMGKH----RID--LNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RDV----TTYNSLIAGLAMHGRS 198 (488)
Q Consensus 134 ~a~~~~~~~~~~----g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~ 198 (488)
+|...+....+. +-. ....++..+...|...|++++|...|++..+ .+. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 776666665443 111 1233455566666666777777666665432 111 2345555666666666
Q ss_pred hHHHHHHHHHHH
Q 036287 199 IEAVEMFREMIN 210 (488)
Q Consensus 199 ~~A~~l~~~m~~ 210 (488)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=1.5e-05 Score=79.12 Aligned_cols=120 Identities=11% Similarity=0.021 Sum_probs=59.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG-RPEEAYDFITNM--KIAPDHIMLGSLLSACK 296 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~ 296 (488)
|...+....+.+.++.|..+|..+ +..+ .+...|...+..-.+.+ +.+.|..+|+.. ....++..|...+.-..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 334444444455566666666665 2111 12233332222222222 466666666654 11112344555555555
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
..|+.+.|..+++++. .....+...+..-...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666666652 233455555555555677777766666554
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=3.8e-07 Score=72.53 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=74.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 297 (488)
+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344455555566666666666555531 1223556666667777777777777777665 3344 47788888999999
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
.|++++|...++++++++|.+..++..|.++
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999998877766554
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=7.2e-07 Score=74.18 Aligned_cols=123 Identities=9% Similarity=-0.021 Sum_probs=81.0
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK 300 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 300 (488)
+...+...|++++|...|....+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc
Confidence 334444445555555555444421 1123455556666666666666666666655 2223 46778888888888899
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHH--HHHhcCCChHHHHHHHHHHHh
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLS--NAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+++|...++++++..|.+...+..+. ..+...|++++|.+.+.....
T Consensus 97 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 97 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999998888877774444 447788999999998887643
No 128
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.57 E-value=2.8e-05 Score=77.22 Aligned_cols=320 Identities=8% Similarity=-0.092 Sum_probs=195.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCC-HHHHHHHHhhcC------CCCHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGL-VENAFEVFSRVK------VKDTVCWTAMI 88 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~-~~~A~~~f~~~~------~~~~~~~~~li 88 (488)
-..+|...+..|-. |+++.|..+|++... .+++..|...+.-..+.++ .+....+|+... ..+...|...+
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34455555555543 889999999998766 3458899988888877764 345666676533 33667888888
Q ss_pred HHHH----HcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHH-------------hcCchHHHHHHHHHHHHcCCCC
Q 036287 89 DGLV----RNGEMARALDLFREMQRDNVRPN-E-VTIVCVLSACS-------------QLGALELGRWIHSYMGKHRIDL 149 (488)
Q Consensus 89 ~~~~----~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~~~~-------------~~~~~~~a~~~~~~~~~~g~~~ 149 (488)
.-+. .+++.+.+.++|++.+.. ++. . ..|......-. ..+.+..|+.++..+...--..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 7654 356788899999999873 332 1 22221111100 1122333444444443311011
Q ss_pred cHhHHHHHHHHHHhcC--C-----HHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 036287 150 NHIVGGALINMYSRCG--D-----IDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT 219 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 219 (488)
+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-+.+.|+.++|..+|++.... |+...
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence 3345655555432221 1 3456678887664 45678988888889999999999999999987 54443
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccC--------cccChhhHHHHHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYG--------IEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIA-PDHIMLGS 290 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ 290 (488)
+......+...+.. -..+.+.... .. .......|...+..+.+.+.++.|..+|++...+ .+..+|..
T Consensus 248 l~~~y~~~~e~~~~--~~~l~~~~~~-~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~ 324 (493)
T 2uy1_A 248 LSLYYGLVMDEEAV--YGDLKRKYSM-GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIY 324 (493)
T ss_dssp HHHHHHHHTTCTHH--HHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHhhcchhHH--HHHHHHHHHh-hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHH
Confidence 32211111121211 1112221110 00 0111356777777777888999999999988221 23445543
Q ss_pred HHHHHHH-hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 291 LLSACKI-HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 291 ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
....-.. .++.+.|..+++.+++..|.++..+...++...+.|+.+.|..+|+.+
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3322222 347999999999999988887777777788888899999999999986
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.57 E-value=9.2e-07 Score=71.85 Aligned_cols=100 Identities=9% Similarity=-0.050 Sum_probs=87.6
Q ss_pred cccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 249 IEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 249 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 556667788899999999999999987 4444 688899999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhC
Q 036287 326 SNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+.+|...|++++|.+.++...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=2.7e-06 Score=70.60 Aligned_cols=126 Identities=8% Similarity=-0.091 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+....+.. +.+..++..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777777777777777777776643 3356666666667777777777777777766654 33455666666667
Q ss_pred HhcCCHHHHHHHHHhccc---CCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 036287 162 SRCGDIDKALQVFEEMKE---RDVTTYNS--LIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~---~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~ 209 (488)
...|++++|...|++..+ .+...+.. ++..+...|++++|+..+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777776666543 23334422 2233555666666666666543
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=7.7e-07 Score=69.76 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=65.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI-APDHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~ 297 (488)
+..+...+...|++++|.+.+..+.+. .+.+...+..+...|.+.|++++|...++++ .. +.+..+|..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 333444444444444444444444421 1122344555555666666666666666555 21 2246667777777778
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS 332 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 332 (488)
.|+++.|...++++.+..|.++..+..+..++...
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 88888888888888888887777777776666543
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=4.1e-07 Score=74.81 Aligned_cols=121 Identities=10% Similarity=0.021 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC
Q 036287 20 TRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 20 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 96 (488)
+.+.+.++....+.+.+|..+ .+++...|..+...+.+.|++++|...|++.. +.+...|..+..+|...|+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI-----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHhCC-----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence 344445554444444333222 12234555666666666666666666666543 3355566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR 146 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 146 (488)
+++|+..|++..+.. +.+...+..+..++...|++++|...|+.+++..
T Consensus 86 ~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 86 FQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666543 2345555666666666666666666666666543
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=9.4e-07 Score=69.88 Aligned_cols=114 Identities=11% Similarity=-0.060 Sum_probs=70.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 297 (488)
+..+...+...|++++|...+....+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 333444444445555555555444421 1123445555556666666666666666554 2223 36677777777888
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCCh
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW 335 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 335 (488)
.|+++.|...++++.+..|.++..+..+..++...|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888877787887777776654
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=9.6e-07 Score=70.23 Aligned_cols=80 Identities=9% Similarity=-0.050 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
..+..+...|...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.+...+..+..++..
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33444444444444444444444443 1122 355666666677777777777777777777777766666666666655
Q ss_pred CC
Q 036287 332 SG 333 (488)
Q Consensus 332 ~g 333 (488)
.|
T Consensus 131 ~~ 132 (133)
T 2lni_A 131 QY 132 (133)
T ss_dssp HT
T ss_pred hc
Confidence 44
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=5.1e-06 Score=71.52 Aligned_cols=26 Identities=19% Similarity=-0.009 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+++.+...|...|++++|+..+++..
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555554443
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=5.5e-06 Score=76.38 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCchHHHHHHHHHHHHcCCC---Cc--
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV------TIVCVLSACSQLGALELGRWIHSYMGKHRID---LN-- 150 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~-- 150 (488)
..+...+..+...|++++|++.+.+..+.... +.. .+..+...+...|++++|...+....+.... +.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556677788888888888888877764321 221 1222333344555566666655555432111 11
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC-----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE-----RD-----VTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
..+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..+++..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 22444555555555555555555544331 11 1344444445555555555555555443
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=8.7e-07 Score=81.35 Aligned_cols=49 Identities=6% Similarity=-0.091 Sum_probs=28.4
Q ss_pred cCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHh-CChhHHHHHHHHHHhc
Q 036287 266 VGRPEEAYDFITNM-KIAPDHIM-LGSLLSACKIH-GKLQLGEQIAKRLLDC 314 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~-g~~~~a~~~~~~~~~~ 314 (488)
.|+.++|.+.++.. ...|+... ...+...+... +.+++|..+|+++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 46677777766665 55555332 33333333333 5577788888777663
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=6.4e-07 Score=84.58 Aligned_cols=160 Identities=10% Similarity=0.026 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 036287 165 GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241 (488)
Q Consensus 165 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 241 (488)
+++++|...|+...+ .+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+.++-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-
Confidence 334444444444332 245678888888888888888888888888743 332100 001111100
Q ss_pred hcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 242 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
+.....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.+.
T Consensus 193 --------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 193 --------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred --------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 011457778888888999999999888887 4444 578899999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCChHHH-HHHHHHHH
Q 036287 320 GTYVLLSNAYASSGKWKEA-VQIRAKMK 346 (488)
Q Consensus 320 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 346 (488)
.++..+..++...|++++| ...++.|.
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 45666664
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=0.00011 Score=68.63 Aligned_cols=180 Identities=11% Similarity=-0.006 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 84 WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG-ALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
++.+-....+.+..++|++++.+++..+ +-+...|+.--.++...+ .++++...+..++... +.+..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333334444555667888888877753 234455666666666666 4777777777777665 445666666655555
Q ss_pred hc-C-CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 163 RC-G-DIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSI--------EAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 163 ~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
+. + ++++++++++++.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...++.-...+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 55 5 67788888877775 35567766655555555555 7788888777753 3355556555555555
Q ss_pred cCC-------HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC
Q 036287 230 GGL-------VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 230 ~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 268 (488)
.+. ++++++.+..+... -+-|...|+-+-..+.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 554 45666666665531 12234555555555555444
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=5.8e-06 Score=64.57 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
..+|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|..++..+.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555566666666666666666655432 2234444445555555555555555555544432 2233344444444
Q ss_pred HHhcCCHHHHHHHHHh
Q 036287 161 YSRCGDIDKALQVFEE 176 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~ 176 (488)
|...|++++|...|++
T Consensus 87 ~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 4444444444444444
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=4.8e-06 Score=75.18 Aligned_cols=133 Identities=11% Similarity=-0.073 Sum_probs=72.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC--hhhHHHHHHHHHh
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ--IEHYGCIVDLLSR 265 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 265 (488)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|....+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 344455555555555555555442 233333333334555666666666666544321 1 111 2245556666666
Q ss_pred cCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 266 VGRPEEAYDFITNM---KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 266 ~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
.|++++|++.|++. +..|. ...+.....++...|+.++|...|+++...+|. ...+..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 77777777766665 11132 234555666677777777777777777777776 4444433
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=1.6e-06 Score=66.45 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC--CchhHHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA--DSGTYVLLSN 327 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 327 (488)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556777888888899999999988876 3333 5778888999999999999999999999999999 8899999999
Q ss_pred HHhcC-CChHHHHHHHHHHHhCCC
Q 036287 328 AYASS-GKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 328 ~~~~~-g~~~~a~~~~~~m~~~g~ 350 (488)
+|... |++++|.+.++...+..-
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999876543
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=4.9e-06 Score=75.13 Aligned_cols=181 Identities=13% Similarity=0.008 Sum_probs=137.2
Q ss_pred hcCCHHHHHHHHHhccc---CCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCCCCH---------------
Q 036287 163 RCGDIDKALQVFEEMKE---RDVTTYNSL-------IAGLAMHGRSIEAVEMFREMINQGIRPTK--------------- 217 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 217 (488)
..++.+.|.+.|.++.+ .....|+.+ ...+...++..+++..++.-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57889999999988775 345788877 4566666666677666665544 33321
Q ss_pred -------HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HH
Q 036287 218 -------VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPD----HI 286 (488)
Q Consensus 218 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~----~~ 286 (488)
........++...|++++|.++|..+... .|+......+...+.+.+++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234556788899999999999999853 35433666677789999999999999998744443 34
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC--CC-CchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCR--SA-DSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+..+..++...|++++|+..|++..... |. .+.....+..++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67888899999999999999999998543 43 3457788899999999999999999999774
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.7e-06 Score=68.51 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|.++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667777888889999998888876 3344 57888889999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 036287 331 SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~ 348 (488)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.44 E-value=4.9e-07 Score=76.47 Aligned_cols=118 Identities=8% Similarity=0.090 Sum_probs=74.3
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHhCCh--hH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSA-CKIHGKL--QL 303 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 303 (488)
..|++++|...+....+. -+.+...+..+...|...|++++|...+++. ...| +...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345555555555555432 1223455666666666666666666666665 2222 45566666666 6677776 77
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 304 GEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 304 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
|...++++++.+|.++.++..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777787777777777777777777888888888888877777654
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=6.5e-06 Score=64.88 Aligned_cols=115 Identities=12% Similarity=-0.032 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3456666666666777777777776666542 3345555566666666666666666666665543 2334455555556
Q ss_pred HHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCC
Q 036287 161 YSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGR 197 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 197 (488)
|.+.|++++|...|++..+ .+...+..+...+...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666555432 234445555555554444
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=4.9e-06 Score=66.01 Aligned_cols=97 Identities=10% Similarity=0.000 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34566667777777777777777777766542 2345556666666666666666666666666543 234455555555
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 036287 160 MYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~ 178 (488)
+|.+.|++++|.+.|++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 6666666666666655543
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=3.7e-06 Score=67.36 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=84.7
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 251 PQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++.+|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35677788888888899999998888876 3334 478888899999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHhC
Q 036287 329 YASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~~ 348 (488)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=3.3e-06 Score=71.31 Aligned_cols=125 Identities=7% Similarity=0.071 Sum_probs=87.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHH-HHhcCCh--H
Q 036287 194 MHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL-LSRVGRP--E 270 (488)
Q Consensus 194 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 270 (488)
..|++++|+..|++..+.. +.+...+..+...+...|++++|...|..+.+. .+.+...+..+..+ |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4566777777777766642 334566666777777777777777777777642 12245666677777 6778887 8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 271 EAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
+|...+++. ...| +...|..+...+...|+++.|...++++++..|.++..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 888888876 3344 46778888888999999999999999999999887543
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=2.4e-07 Score=80.13 Aligned_cols=173 Identities=9% Similarity=-0.059 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG 231 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 231 (488)
+..+......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++..+. .|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------
Confidence 3344555666777777777765433 24456777888888999999999999988873 2221100000
Q ss_pred CHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 232 LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
..+.-. . ......+..+..+|.+.|++++|+..+++. ...| +...|..+..++...|+++.|...++
T Consensus 78 ~~~~~~---~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---K--------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---H--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 0 011356677788888888888888888876 3334 57888889999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHhcCCChHHHH-HHHHHHHhC
Q 036287 310 RLLDCRSADSGTYVLLSNAYASSGKWKEAV-QIRAKMKEA 348 (488)
Q Consensus 310 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 348 (488)
++++..|.+..++..+..++...++.+++. ..+..|...
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999988888887777666 445555433
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=4.6e-06 Score=64.43 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44555666666677777777766665 2223 466666666777777777777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHh
Q 036287 332 SGKWKEAVQIRAKMKE 347 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~ 347 (488)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777777776654
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=3.1e-06 Score=70.51 Aligned_cols=97 Identities=20% Similarity=0.113 Sum_probs=78.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
+...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++.+|.++.+|..+..+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3556777777888888888888888776 3344 5777888888888888888888888888888888888888888888
Q ss_pred hcCCChHHHHHHHHHHHhC
Q 036287 330 ASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 330 ~~~g~~~~a~~~~~~m~~~ 348 (488)
...|++++|.+.+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 8888888888888887664
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.35 E-value=7.8e-06 Score=77.05 Aligned_cols=143 Identities=10% Similarity=-0.002 Sum_probs=81.3
Q ss_pred CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHH
Q 036287 65 LVENAFEVFSRVKV---KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN--------------EVTIVCVLSACS 127 (488)
Q Consensus 65 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~ 127 (488)
++++|...|+.... .+...|..+...|.+.|++++|+..|++..+...... ...+..+..++.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444331 2456788888899999999999999998887531111 245555555555
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHH-HH
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEA-VE 203 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A-~~ 203 (488)
..|++++|...+..+++.. +.+...+..+..+|...|++++|...|++..+ .+...+..+...+...|+.++| ..
T Consensus 208 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555543 33445555555555555555555555555432 2344555555555555555555 23
Q ss_pred HHHHH
Q 036287 204 MFREM 208 (488)
Q Consensus 204 l~~~m 208 (488)
+|+.|
T Consensus 287 ~~~~~ 291 (336)
T 1p5q_A 287 LYANM 291 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=1.5e-06 Score=86.19 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=89.2
Q ss_pred HHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChh
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQ 302 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 302 (488)
.+...|++++|.+.+++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445667777777777777642 34 3677778888888888888888888876 4445 4788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH--HhcCCChHHHHHHHHH
Q 036287 303 LGEQIAKRLLDCRSADSGTYVLLSNA--YASSGKWKEAVQIRAK 344 (488)
Q Consensus 303 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 344 (488)
+|...++++++..|.+..++..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999998888888877 8888999999998874
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=2e-06 Score=67.67 Aligned_cols=95 Identities=12% Similarity=-0.111 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
..+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|.++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778888999999999999988 4445 588899999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhC
Q 036287 332 SGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~~ 348 (488)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=0.0001 Score=68.38 Aligned_cols=229 Identities=11% Similarity=-0.002 Sum_probs=125.2
Q ss_pred HHcCCHH-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc----------hHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 92 VRNGEMA-RALDLFREMQRDNVRPN-EVTIVCVLSACSQLGA----------LELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 92 ~~~g~~~-~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
.+.|++. +|++++..++..+ |+ ...|+.--......+. ++++..++..++... +.+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445543 6777777777643 43 3334433333322222 456666677666654 446666666666
Q ss_pred HHHhcC--CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 036287 160 MYSRCG--DIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGR-SIEAVEMFREMINQGIRPTKVTFVGVLNACSHG--- 230 (488)
Q Consensus 160 ~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--- 230 (488)
++.+.| .++++..+++++.+ +|..+|+--.-.+...|. ++++++.++++.+.. +-|...++.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 666666 37777777777664 466677776666667776 477777777777753 23444444333333222
Q ss_pred -----------CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCHHH
Q 036287 231 -----------GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV-----------GRPEEAYDFITNM-KIAPDHIM 287 (488)
Q Consensus 231 -----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~ 287 (488)
+.++++++.+...... .+-|...|+-+-..+.+. +.++++++.++++ ...||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 3456666666666531 122344554444444443 3455666666665 444542 2
Q ss_pred HHHHHHHH-----HHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 288 LGSLLSAC-----KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 288 ~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
|..+-.+. ...+..++....+.++.+++|....-|.-+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 32211111 12355566667777777777766555554443
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=1.5e-06 Score=75.10 Aligned_cols=120 Identities=8% Similarity=-0.085 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------------
Q 036287 55 VMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE--------------- 116 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 116 (488)
..+.+....|++++|.+.++.-... ....|..+...+.+.|++++|+..|++..+... .+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHH
Confidence 3344444555666666655543211 344677777788888888888888888876421 111
Q ss_pred -HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036287 117 -VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176 (488)
Q Consensus 117 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 176 (488)
..+..+..++...|++++|...+..+++.. +.+..++..+..+|...|++++|.+.|++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 333444444444444444444444444432 22333344444444444444444444443
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=7.8e-06 Score=63.09 Aligned_cols=105 Identities=11% Similarity=0.035 Sum_probs=61.8
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHG 299 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 299 (488)
.+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 3334444444444444444444421 1123445555555566666666666666554 2223 4666777777788888
Q ss_pred ChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
++++|...++++.+..|.++..+..+..+
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 88888888888888888776666655544
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.3e-05 Score=64.98 Aligned_cols=107 Identities=10% Similarity=-0.062 Sum_probs=61.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLS 293 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 293 (488)
+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33333444444444444444444432 1232 344555555666666666666666554 2233 4566667777
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 294 ACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 294 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
++...|++++|...++++++..|.+...+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 777777888888888888777777766655555443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=6.7e-06 Score=66.62 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=89.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
+...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4677888899999999999999999987 66777 678888999999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHhC
Q 036287 327 NAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
No 161
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.29 E-value=0.00015 Score=67.63 Aligned_cols=168 Identities=13% Similarity=-0.017 Sum_probs=98.6
Q ss_pred HHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-chH
Q 036287 60 YVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNG-EMARALDLFREMQRDNVRPNEVTIVCVLSACSQL-G-ALE 133 (488)
Q Consensus 60 ~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~-~~~ 133 (488)
..+.+..++|+++++.+. +.+..+||.--..+...| .+++++++++.+.... +-+..+|+.-...+... + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 344444556666666654 234456666666666666 4677777777776653 33455565555555554 5 666
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH--------HHHHHHHhccc---CCHHHHHHHHHHHHhcCC-----
Q 036287 134 LGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID--------KALQVFEEMKE---RDVTTYNSLIAGLAMHGR----- 197 (488)
Q Consensus 134 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----- 197 (488)
++.+++..+++.. +.+-.+|+--.-+..+.|.++ ++++.++++.+ .|..+|+-....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence 6666666666554 345555554444444444443 67777776664 466778877777777665
Q ss_pred --hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 198 --SIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 198 --~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
++++++.++++... -+-|...++.+-..+.+.
T Consensus 222 ~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 57888888888774 233445554444434333
No 162
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.29 E-value=4.5e-06 Score=68.32 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
..+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...+..+++.. +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344445555555555555555555554432 2234444444444444444444444444444432 22233333344444
Q ss_pred HhcCCHHHHHHHHHh
Q 036287 162 SRCGDIDKALQVFEE 176 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~ 176 (488)
...|++++|.+.|++
T Consensus 100 ~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 100 LQXGELAEAESGLFL 114 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 444444444444433
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=2.6e-06 Score=67.66 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc-------hhHHH
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS-------GTYVL 324 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 324 (488)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566777888888888888888876 4445 477788888888888889999888888888776553 25667
Q ss_pred HHHHHhcCCChHHHHHHHHHHHh
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++.+|...|++++|.+.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999988887755
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.25 E-value=1.3e-05 Score=79.38 Aligned_cols=117 Identities=10% Similarity=0.033 Sum_probs=73.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456677788888877776653 356677777777777788888888777777742 23455666667777777777
Q ss_pred HHHHHHHHhcccccCcccC-hhhHHHHHHH--HHhcCChHHHHHHHH
Q 036287 234 DLGFEIFQSMTRDYGIEPQ-IEHYGCIVDL--LSRVGRPEEAYDFIT 277 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 277 (488)
++|.+.|+++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777776642 232 3344444444 666667777776666
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.21 E-value=2.5e-05 Score=61.52 Aligned_cols=92 Identities=8% Similarity=-0.107 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+++.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555556666666666666666655542 2234444445555555555555555555544443 22233333344444
Q ss_pred HhcCCHHHHHHHHH
Q 036287 162 SRCGDIDKALQVFE 175 (488)
Q Consensus 162 ~~~g~~~~A~~~~~ 175 (488)
...|++++|...|+
T Consensus 83 ~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 83 IAVKEYASALETLD 96 (126)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCHHHHHHHHH
Confidence 44444444444333
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=7.7e-06 Score=68.07 Aligned_cols=105 Identities=10% Similarity=-0.033 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036287 218 VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSA 294 (488)
Q Consensus 218 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 294 (488)
..+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444555555566666666666655531 23 4556667777777777777777777766 3344 47788889999
Q ss_pred HHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 295 CKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 295 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
+...|++++|...+++++++.|.+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999887755443
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.20 E-value=2.8e-05 Score=61.57 Aligned_cols=110 Identities=5% Similarity=-0.085 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
.+|..+...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|.+.+...++.... +...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~---- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLI---- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHH----
Confidence 456666666777777777777777666542 234455555555556666666666555555443200 00000000
Q ss_pred HhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 036287 162 SRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT 219 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 219 (488)
..+|..+...+...|++++|++.|++.... .||..+
T Consensus 83 --------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 83 --------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 123445555666666777777777666652 344443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=4.6e-05 Score=74.24 Aligned_cols=161 Identities=8% Similarity=-0.052 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHcC--CCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----C----CHHH
Q 036287 119 IVCVLSACSQLGALELGRWIHSYMGKHR--IDL---NHIVGGALINMYSRCGDIDKALQVFEEMKE-----R----DVTT 184 (488)
Q Consensus 119 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~ 184 (488)
+..+...|...|++++|.+.+..+.+.- +.. ...+.+.+...+...|+.+.|..+++.... . -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445555555555555555555543321 110 012233334445555666666666655432 1 1235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-----hh
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQG----IRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-----IE 254 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~ 254 (488)
+..+...|...|++++|..++++....- -+|. ..++..++..|...|++++|..+++.......-.++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6667777777777777777777665421 1111 235556667777777877777777765532111111 24
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5566666677778888887766554
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=8.7e-06 Score=64.38 Aligned_cols=92 Identities=17% Similarity=0.132 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 036287 257 GCIVDLLSRVGRPEEAYDFITNM-KIAPD-H---IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLLSNA 328 (488)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 328 (488)
..+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556677778888887777776 22333 2 466677777888888888888888888888877 6667888888
Q ss_pred HhcCCChHHHHHHHHHHHhC
Q 036287 329 YASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~~ 348 (488)
|...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877653
No 170
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.16 E-value=2.9e-05 Score=62.82 Aligned_cols=94 Identities=15% Similarity=-0.002 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
..+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345555556666666666666666665543 2344555555555566666666666666555543 23344445555555
Q ss_pred HhcCCHHHHHHHHHhc
Q 036287 162 SRCGDIDKALQVFEEM 177 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~ 177 (488)
...|++++|.+.|++.
T Consensus 97 ~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5555555555555544
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=3.9e-05 Score=74.74 Aligned_cols=163 Identities=7% Similarity=-0.144 Sum_probs=100.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHhccccc---CcccC-hhh
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKV----TFVGVLNACSHGGLVDLGFEIFQSMTRDY---GIEPQ-IEH 255 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~ 255 (488)
+..+...|...|++++|.+.+.++...- ..++.. +.+.+-..+...|+.+++..++....... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666677777766666654311 111111 12222233445567777777666554211 11222 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---CCC----ch
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM-----K--IAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCR---SAD----SG 320 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 320 (488)
+..|...|...|++++|..++++. + -+|. ..++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677888888888888888877765 1 1222 5567778888888899998888888887642 222 23
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677778888899888887776643
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.15 E-value=4.9e-05 Score=60.64 Aligned_cols=96 Identities=8% Similarity=-0.127 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|...+..+++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45556666666666666666666666655542 2234455555555555555555555555555443 223444444444
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 036287 160 MYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~ 177 (488)
+|...|++++|...|++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 444444444444444443
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.14 E-value=2e-05 Score=60.14 Aligned_cols=61 Identities=13% Similarity=-0.017 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 144 (488)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444444444444444444432 22333333344444444444444444444433
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=1.2e-05 Score=63.30 Aligned_cols=96 Identities=9% Similarity=0.143 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC-------chhHH
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD-------SGTYV 323 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 323 (488)
...+..+...+...|++++|...+++. ... .+...+..+...+...|+++.|...++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677788888889999998888877 323 357788888899999999999999999999987655 77888
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 324 LLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=2.9e-05 Score=61.05 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 144 (488)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 345556666666666666666666665542 23444455555555555555555555555444
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=1.3e-05 Score=65.47 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhc-------CCCCchhH----HHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDC-------RSADSGTY----VLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
..|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 48888888999999999999999999998 99998899 9999999999999999999998865
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=1.5e-05 Score=78.64 Aligned_cols=144 Identities=8% Similarity=0.026 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
...|..+...|.+.|++++|+..|++..+. .|+...+ . .+...+ .. ......|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~--------~~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SE--------SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HH--------HHHHHHHHHHHH
Confidence 345666666677777777777777776653 2221100 0 000000 00 011467788888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 339 (488)
+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++++|.+..++..+..++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4444 58889999999999999999999999999999999999999999999999988876
Q ss_pred H-HHHHHHh
Q 036287 340 Q-IRAKMKE 347 (488)
Q Consensus 340 ~-~~~~m~~ 347 (488)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.08 E-value=3.6e-06 Score=65.65 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 266 VGRPEEAYDFITNM-KI---AP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
.|++++|+..|++. .. .| +...|..+...+...|++++|...++++++..|.++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666666555 33 13 245566666666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 036287 341 IRAKMKE 347 (488)
Q Consensus 341 ~~~~m~~ 347 (488)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=1.6e-05 Score=65.89 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...|..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888889999999999999999999999999999999999999999999999999988664
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=3.5e-05 Score=60.42 Aligned_cols=88 Identities=11% Similarity=-0.037 Sum_probs=36.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344444444444444444444432 2233334444444444444444444444444332 1223333334444444444
Q ss_pred HHHHHHHHHh
Q 036287 167 IDKALQVFEE 176 (488)
Q Consensus 167 ~~~A~~~~~~ 176 (488)
+++|...|++
T Consensus 101 ~~~A~~~~~~ 110 (121)
T 1hxi_A 101 ANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=2.9e-05 Score=63.63 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHcC----CCC-cHh
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVR-PNE----VTIVCVLSACSQLGALELGRWIHSYMGKHR----IDL-NHI 152 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~-~~~ 152 (488)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|...+....+.. .++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666666666666666665442100 111 234444444555555555555554443321 000 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
++..+...|...|++++|...+++..+ .+ ..++..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344445555555555555555544331 11 1234444445555555555555555443
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.05 E-value=0.00075 Score=62.56 Aligned_cols=218 Identities=11% Similarity=-0.007 Sum_probs=151.3
Q ss_pred HhcCch-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHhccc---CCHHHHHHHHHHH
Q 036287 127 SQLGAL-ELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD----------IDKALQVFEEMKE---RDVTTYNSLIAGL 192 (488)
Q Consensus 127 ~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~ 192 (488)
.+.|.+ ++|......++... +.+..+|+.--......|. +++++.+++.+.. ++..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344554 47888888888775 4455666654444433333 6788888888764 5778999888888
Q ss_pred HhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHhcccccCcccChhhHHHHHHHHHhc---
Q 036287 193 AMHGR--SIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL-VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV--- 266 (488)
Q Consensus 193 ~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 266 (488)
...|+ +++++..++++.+.. +-|...++.-.-.+...|. ++++++.+..+.+. -+-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 88884 899999999999864 4456666655555666777 68999999999853 234566676666655554
Q ss_pred -----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh-----------CChhHHHHHHHHHHhcCCCCchhH
Q 036287 267 -----------GRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH-----------GKLQLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 267 -----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 322 (488)
+.++++++.+.+. ...| |...|+-+-..+... +.++++.+.++++++..|++.-++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4578888888877 3444 577787555554444 357899999999999999885554
Q ss_pred HHHHH---HHhcCCChHHHHHHHHHHHhC
Q 036287 323 VLLSN---AYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 323 ~~l~~---~~~~~g~~~~a~~~~~~m~~~ 348 (488)
..++. .....|..+++...+.++.+-
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 44332 223467788888888888763
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=1.1e-05 Score=66.08 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC------CCCch
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM----KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCR------SADSG 320 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 320 (488)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++.++.. +....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455555566666666666655554 10111 4456667777777888888888888777642 11234
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888888999999888887654
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.99 E-value=5.5e-05 Score=59.62 Aligned_cols=95 Identities=14% Similarity=0.014 Sum_probs=55.9
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccC-h---hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQ-I---EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACK 296 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 296 (488)
.+...|++++|...|..+.+. .|+ . ..+..+..+|.+.|++++|...+++. ...|+ ...+..+..++.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555554432 122 1 34455556666666666666666655 22232 455666777777
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
..|++++|...++++++..|.++....
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 888888888888888888777654433
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=3.8e-05 Score=73.25 Aligned_cols=136 Identities=9% Similarity=-0.028 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVD 261 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 261 (488)
..|..+...+.+.|++++|+..|++..+. .|+.. .... ..... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 45777778888888888888888887752 11100 0000 11111 1222 3578888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 339 (488)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++++++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 6566 47889999999999999999999999999999999989999988888888777665
Q ss_pred H
Q 036287 340 Q 340 (488)
Q Consensus 340 ~ 340 (488)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=1.9e-05 Score=74.44 Aligned_cols=147 Identities=10% Similarity=-0.047 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777888888999999999999998873 455432 233444444433221 136788888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH-hcCCChHHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY-ASSGKWKEA 338 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 338 (488)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.+..++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4444 5788999999999999999999999999999999888888887774 345667778
Q ss_pred HHHHHHHHhC
Q 036287 339 VQIRAKMKEA 348 (488)
Q Consensus 339 ~~~~~~m~~~ 348 (488)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877553
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=8.2e-05 Score=73.38 Aligned_cols=124 Identities=12% Similarity=0.084 Sum_probs=97.6
Q ss_pred HHhccCCHHHHHHHHHhccccc--Cc---ccC-hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDY--GI---EPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM---------KIAPD-HIMLG 289 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 289 (488)
.+...|++++|+.++.+..+.. -+ .|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557889999988887765421 12 222 567889999999999999999988875 33444 57789
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHh-----cCCCCchh---HHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 290 SLLSACKIHGKLQLGEQIAKRLLD-----CRSADSGT---YVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 290 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.|...|...|++++|+.+++++++ ++|+.+.+ ...|..++...|++++|+.++..+++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 56776554 4567788889999999999999998753
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=2.8e-05 Score=73.23 Aligned_cols=151 Identities=11% Similarity=0.030 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45567788899999999999999998764221111 1222333333332221 12556666677777
Q ss_pred CCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHhCChhHHHH
Q 036287 231 GLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSA-CKIHGKLQLGEQ 306 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~ 306 (488)
|++++|...++...+ +.| +...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777764 233 4667777777888888888888888776 55554 3344444433 234456677778
Q ss_pred HHHHHHhcCCCCc
Q 036287 307 IAKRLLDCRSADS 319 (488)
Q Consensus 307 ~~~~~~~~~p~~~ 319 (488)
.++++++..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 8888887776553
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=0.00014 Score=71.50 Aligned_cols=120 Identities=8% Similarity=-0.001 Sum_probs=83.0
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKD---------------TVCWTAMIDGLVRNGEMARALDLFREMQRDN 111 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 111 (488)
...|..+...|.+.|++++|...|++.. +.+ ..+|+.+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4567777788888888888888887654 223 4677777788888888888888888777753
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 112 VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 112 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
+.+...+..+..++...|++++|...+..+++.. +.+..++..+..++.+.|+.++|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777654 334556666666777666666554
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=2.9e-05 Score=63.32 Aligned_cols=115 Identities=13% Similarity=-0.031 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcc-cChhhHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIE-PQIEHYGCIVD 261 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~ 261 (488)
..+......+.+.|++++|+..|++.++. .|+...- .. .... .+...|..+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~---------------------~a---~~~~~~~a~a~~n~g~ 65 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPE---------------------EA---FDHAGFDAFCHAGLAE 65 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTT---------------------SC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcch---------------------hh---hhhccchHHHHHHHHH
Confidence 34566666777788888888888887773 3331000 00 0000 11236666666
Q ss_pred HHHhcCChHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KI-------APD-HIML----GSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++++++.|.+...+.
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 777777777776666654 33 776 5678 89999999999999999999999999988865544
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=2.4e-05 Score=60.87 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHhcccccC--cccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHH
Q 036287 230 GGLVDLGFEIFQSMTRDYG--IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGE 305 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 305 (488)
.|++++|...|++..+. + -+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666531 1 1223566777777788888888888887776 3334 4677788888888889999999
Q ss_pred HHHHHHHhcCCCCchh
Q 036287 306 QIAKRLLDCRSADSGT 321 (488)
Q Consensus 306 ~~~~~~~~~~p~~~~~ 321 (488)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9998888888877543
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=0.00015 Score=69.13 Aligned_cols=119 Identities=9% Similarity=0.014 Sum_probs=80.9
Q ss_pred eHHHHHHHHHHcCCHHHHHHHHhhcCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036287 52 ASTVMINCYVEHGLVENAFEVFSRVKV-------------------KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNV 112 (488)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 112 (488)
.|..+...+.+.|++++|++.|++... .+..+|+.+..+|.+.|++++|+..+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 466666777777777777777765442 134567777778888888888888888777753
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
+.+...+..+..++...|++++|...++.+.+.. +.+..++..+..++.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777777777777777777777664 3355566666666666666665543
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=0.00013 Score=54.92 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...|..+...+...|++++|...++++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999999999999999999999999999999999999999988653
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.77 E-value=0.0012 Score=66.47 Aligned_cols=167 Identities=8% Similarity=-0.029 Sum_probs=103.4
Q ss_pred HHHHHHHHhccc---CCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--C
Q 036287 168 DKALQVFEEMKE---RDVTTYNSLIAGLAMHGR----------SIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG--L 232 (488)
Q Consensus 168 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--~ 232 (488)
++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 445555555443 234455555555554444 566666666666542 223444444444455555 4
Q ss_pred HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh-----------
Q 036287 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG-RPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH----------- 298 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----------- 298 (488)
++++.+.++++.+. -+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 56666666666642 1223445555555555666 666777776666 4444 466666666655553
Q ss_pred ---CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHH
Q 036287 299 ---GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKE 337 (488)
Q Consensus 299 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 337 (488)
+.++++.+.+.+++..+|.+..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888554
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=9.1e-05 Score=57.20 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=65.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 271 EAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|.+..+|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355555554 4444 57788888899999999999999999999999999899999999999999999999999988653
No 196
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00034 Score=57.73 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDN------VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVG 154 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 154 (488)
...|......+.+.|++++|+..|.+.+..- -.|+...+ ..+ -+.+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL----DRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH----HHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH----HHHHHHHH
Confidence 4467777788888888888888888776530 01111100 000 02234566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV 218 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 218 (488)
..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++++|+..|++..+. .|+..
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 6677777777777777777776553 35567777777777777777777777777763 45543
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=5.5e-05 Score=57.74 Aligned_cols=91 Identities=19% Similarity=0.071 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC------chhHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD------SGTYV 323 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 323 (488)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456777788888888888888888876 3334 57788888889999999999999999999999887 66666
Q ss_pred HHHHHHhcCCChHHHHHHH
Q 036287 324 LLSNAYASSGKWKEAVQIR 342 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~ 342 (488)
.+..++...|+++.|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777666665554433
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.73 E-value=0.00013 Score=53.18 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888776 3333 56778888888888899999999999998888888888888877775
Q ss_pred cC
Q 036287 331 SS 332 (488)
Q Consensus 331 ~~ 332 (488)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=6.3e-05 Score=57.38 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc------HhHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN------HIVG 154 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~ 154 (488)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+++... .+ ..++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHHH
Confidence 4456666667777777777777777766643 33555666666666667777777776666665531 11 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 036287 155 GALINMYSRCGDIDKALQVFEE 176 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~ 176 (488)
..+..++...|+.+.|...|++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 4444455555544444444433
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.55 E-value=0.0022 Score=51.28 Aligned_cols=110 Identities=14% Similarity=-0.004 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR----CGDIDKA 170 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A 170 (488)
+++++|++.|++..+.| .|+.. +...+...+..++|.++++...+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777776665 33333 4444555556666777777766664 45555666666666 5677777
Q ss_pred HHHHHhccc-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 036287 171 LQVFEEMKE-RDVTTYNSLIAGLAM----HGRSIEAVEMFREMINQG 212 (488)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 212 (488)
.+.|++..+ .+..++..|...|.. .++.++|+..|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777766543 455666666666666 666777777777666654
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=7.3e-05 Score=60.84 Aligned_cols=84 Identities=18% Similarity=0.051 Sum_probs=66.7
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC----------hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC
Q 036287 265 RVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK----------LQLGEQIAKRLLDCRSADSGTYVLLSNAYASS 332 (488)
Q Consensus 265 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 332 (488)
+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|.+..+|..+.++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445667777777665 3344 46667767666666655 46999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhC
Q 036287 333 G-----------KWKEAVQIRAKMKEA 348 (488)
Q Consensus 333 g-----------~~~~a~~~~~~m~~~ 348 (488)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999998774
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.00046 Score=68.05 Aligned_cols=87 Identities=13% Similarity=-0.031 Sum_probs=45.3
Q ss_pred HHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHc-----CC-CC-cHhHHHH
Q 036287 91 LVRNGEMARALDLFREMQRD---NVRPN----EVTIVCVLSACSQLGALELGRWIHSYMGKH-----RI-DL-NHIVGGA 156 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~-~~~~~~~ 156 (488)
+..+|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|..+++++++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665441 11121 245555666666666666666665555432 11 11 1334455
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 036287 157 LINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~ 177 (488)
|...|...|++++|+.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555443
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.46 E-value=0.0023 Score=62.03 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=88.9
Q ss_pred HHHHHhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHh-----cCCCCc---hh
Q 036287 260 VDLLSRVGRPEEAYDFITNM------KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLD-----CRSADS---GT 321 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 321 (488)
+.-+.+.|++++|+.++++. -+.|+ ..+++.|..+|...|++++|+.+++++++ ++|.++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999998888765 12232 56788999999999999999999999886 345544 46
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 036287 322 YVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVK 393 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 393 (488)
++.|+..|...|++++|..++++..+--.. ..| ..||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999987652110 112 379999999988888877775
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.42 E-value=0.00094 Score=49.25 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 282 APDHIMLGSLLSACKIHGK---LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 282 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.+|+..+..+..++...++ .++|..+++++++.+|.++.+...++..+...|++++|...++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467788888888866655 69999999999999999999999999999999999999999999987643
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.0018 Score=46.82 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+....+.. +.+..++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456666666777777777777777666543 3345556666666666666666666666666553 2344444445444
Q ss_pred HHh
Q 036287 161 YSR 163 (488)
Q Consensus 161 y~~ 163 (488)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.39 E-value=0.023 Score=59.85 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 107 (488)
..+|++++|.++.+.+. +...|..|...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44455555555544432 3345555555555555555555555544
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.32 E-value=0.0012 Score=52.91 Aligned_cols=86 Identities=8% Similarity=-0.145 Sum_probs=38.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
|...|...+..++|++.|++..+.| +...+..+...|.. .++.++|..+++...+.| +...+..|..+|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333334444444444444444432 33344444444443 444445555544444443 2333444444444
Q ss_pred h----cCCHHHHHHHHHhcc
Q 036287 163 R----CGDIDKALQVFEEMK 178 (488)
Q Consensus 163 ~----~g~~~~A~~~~~~~~ 178 (488)
. .+++++|...|++..
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 4 445555555554433
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.002 Score=49.37 Aligned_cols=76 Identities=11% Similarity=-0.053 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 100 ALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 100 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
|+..|++..+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444332 2233444444444444445555544444444433 223334444455555555555555554443
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.17 E-value=0.028 Score=56.53 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=118.1
Q ss_pred HHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 036287 66 VENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE----------MARALDLFREMQRDNVRPNEVTIVCVLSACSQLG-- 130 (488)
Q Consensus 66 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-- 130 (488)
-++|++.++.+. +.+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 456677777665 3355677766666666666 788888888888764 336677777777777788
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHhc-----------
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG-DIDKALQVFEEMKE---RDVTTYNSLIAGLAMH----------- 195 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----------- 195 (488)
+++++.+.++.+.+.. +.+..+|+.-.-+..+.| .++++.+.++++.+ .|..+|+-....+...
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 6688888888888876 456777777777777778 88888888888876 3667888877776653
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 196 ---GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 196 ---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+.++++++.+++..... +-|...|...-..+.+.+..
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45688999998888742 33556666666666666653
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.16 E-value=0.0008 Score=54.68 Aligned_cols=108 Identities=11% Similarity=0.034 Sum_probs=62.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
.+.+.+++|++.+++..+.. +.+...|..+..++...++++.+....+ .+++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHH
Confidence 34455666777776666653 3355666666666665554432221110 134555
Q ss_pred HHHHhccc---CCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036287 172 QVFEEMKE---RDVTTYNSLIAGLAMH-----------GRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227 (488)
Q Consensus 172 ~~~~~~~~---~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 227 (488)
..|++..+ .+..+|..+..+|... |++++|++.|++..+ +.|+...|...+...
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 55555443 2445566666666554 478888888888888 577777776655543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.10 E-value=0.0016 Score=63.07 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh-----cCCCCc---hhHHHHHH
Q 036287 266 VGRPEEAYDFITNM---------KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD-----CRSADS---GTYVLLSN 327 (488)
Q Consensus 266 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 327 (488)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ .+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 56788888887764 22333 57789999999999999999999999987 455554 46888999
Q ss_pred HHhcCCChHHHHHHHHHHHh
Q 036287 328 AYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 328 ~~~~~g~~~~a~~~~~~m~~ 347 (488)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.04 E-value=0.0024 Score=47.71 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=30.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 150 NHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+..++..+..+|.+.|++++|...|++..+ .+...|..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555554432 233445555555555555555555555444
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.98 E-value=0.0058 Score=59.16 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=74.8
Q ss_pred HHHHhccCCHHHHHHHHHhccccc--CcccC----hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 036287 224 LNACSHGGLVDLGFEIFQSMTRDY--GIEPQ----IEHYGCIVDLLSRVGRPEEAYDFITNM---------KIAPD-HIM 287 (488)
Q Consensus 224 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 287 (488)
+..+...|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788888888887765421 12222 467888899999999999999888876 33344 567
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHh-----cCCCCchhHH
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLD-----CRSADSGTYV 323 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 323 (488)
++.|...|...|++++|+.+++++++ ++|+.+.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88999999999999999999999977 5787765544
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.95 E-value=0.026 Score=59.51 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=43.6
Q ss_pred HHcCCHHHHHH-HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHH
Q 036287 61 VEHGLVENAFE-VFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 61 ~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.+ +.. .-+......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHHHHH
Confidence 34556666655 4433320 1122455555555666666655431 110 0012223445555555443
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 140 SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 140 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
+.+ .+...|..|..++.+.|+++.|.++|.++
T Consensus 676 ~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 676 TDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 211 23445555555555555555555554443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0045 Score=59.90 Aligned_cols=93 Identities=12% Similarity=-0.045 Sum_probs=71.1
Q ss_pred ccCCHHHHHHHHHhccccc--Cccc---C-hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDY--GIEP---Q-IEHYGCIVDLLSRVGRPEEAYDFITNM---------KIAPD-HIMLGSLL 292 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~--~~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 292 (488)
..|++++|..++++..+.. -+.| + ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888877665321 1222 2 467889999999999999999988876 33444 57789999
Q ss_pred HHHHHhCChhHHHHHHHHHHh-----cCCCCchh
Q 036287 293 SACKIHGKLQLGEQIAKRLLD-----CRSADSGT 321 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 321 (488)
..|...|++++|+.+++++++ ++|+.+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999987 46777644
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.91 E-value=0.025 Score=52.78 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHH--hcC---ChhHHHHHHHHHHHcCCCCC
Q 036287 180 RDVTTYNSLIAGLA--MHG---RSIEAVEMFREMINQGIRPT 216 (488)
Q Consensus 180 ~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~p~ 216 (488)
.+..+|...+.+.. ..+ ...+|+.+|++..+. .|+
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~ 231 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPE 231 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCC
Confidence 46677777776643 233 347788889888884 565
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.89 E-value=0.1 Score=40.48 Aligned_cols=141 Identities=14% Similarity=0.168 Sum_probs=100.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 271 (488)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+-+.+.+ +|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 34467788888888887764 2444555565555555566666677777665444433 444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 272 AYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 272 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
....+-.++ .+..-....+......|.-+.-.+++..++...++++.....+.++|.+.|+..+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444444443 234445667788889999999999999987777888899999999999999999999999999999985
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.75 E-value=0.0074 Score=44.50 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=52.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhH
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KIAP-DHI-MLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 322 (488)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++.+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888999999888877 3444 466 888888899999999999999999999999887766
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.71 E-value=0.0043 Score=45.84 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=53.9
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCch-hHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSG-TYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
....+...|++++|...++++++..|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999987753
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.49 E-value=0.16 Score=47.33 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHH--HcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 036287 78 VKDTVCWTAMIDGLV--RNGE---MARALDLFREMQRDNVRPN-EVTIVCVLSA 125 (488)
Q Consensus 78 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 125 (488)
+.+..+|...+.+.. ..++ ..+|+.+|++..+. .|+ ...+..+.-+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a 242 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALV 242 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 446667776665543 2233 46788888888775 344 3444433333
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.49 E-value=0.015 Score=46.73 Aligned_cols=65 Identities=8% Similarity=-0.013 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHhC---ChhHHHHHHHHHHhcC-C-CCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 283 PDHIMLGSLLSACKIHG---KLQLGEQIAKRLLDCR-S-ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 283 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++..+...+..++.+.+ +.++|..+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56677777777777776 5668888888888877 5 3456777788888888888888888888766
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.25 Score=40.68 Aligned_cols=101 Identities=13% Similarity=0.184 Sum_probs=58.1
Q ss_pred HHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHH
Q 036287 60 YVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 60 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
..++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34566777776666655 3456777777777777777777777766532 333444445556665555554
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 140 SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 140 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
+.....| . ++.....+.-.|+++++.++|.+.
T Consensus 84 ~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4444444 1 223333444556666666666544
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.12 Score=42.51 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=74.8
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFE 238 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 238 (488)
+....+|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+... |..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677777777776665 4566777777777777777777777776543 3334444555566655544
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
+-+....+ .-++.-...+.-.|+++++.+++.+.+.-|....+ ...+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 43333221 12344445556677777777777776543322111 23355666666666554
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.07 E-value=0.043 Score=40.15 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=55.9
Q ss_pred ccChhhHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 250 EPQIEHYGCIVDLLSRVGR---PEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 250 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
+.++..+..+..++...++ .++|..++++. ...|+ +..+..+...+...|++++|...++++++.+|++ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 3456677777777765444 68888888887 45554 6777777888889999999999999999988873 34444
Q ss_pred HHH
Q 036287 325 LSN 327 (488)
Q Consensus 325 l~~ 327 (488)
+..
T Consensus 82 i~~ 84 (93)
T 3bee_A 82 IIE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.97 E-value=0.031 Score=50.00 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=70.2
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----hCChhHHHHHHHHHHhcCCCC-chhHHHHHHHHhcC-CChHH
Q 036287 269 PEEAYDFITNM-KIAPD---HIMLGSLLSACKI-----HGKLQLGEQIAKRLLDCRSAD-SGTYVLLSNAYASS-GKWKE 337 (488)
Q Consensus 269 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 337 (488)
...|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|+++++++|.. ..+++.....++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666655 56676 5678888888888 499999999999999999974 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 036287 338 AVQIRAKMKEAGVQKEPG 355 (488)
Q Consensus 338 a~~~~~~m~~~g~~~~~~ 355 (488)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876653343
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.85 E-value=0.051 Score=40.64 Aligned_cols=72 Identities=13% Similarity=0.012 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-----K----IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++..|.+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666667777777777766654 1 1124677888999999999999999999999999998866544
Q ss_pred H
Q 036287 324 L 324 (488)
Q Consensus 324 ~ 324 (488)
.
T Consensus 85 n 85 (104)
T 2v5f_A 85 N 85 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.75 E-value=2 Score=43.38 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=126.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchH-
Q 036287 55 VMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALE- 133 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~- 133 (488)
.-+..+.+.+++.....++.. ++.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCH
Confidence 334455677778877776666 44455544556667777788777777777766655 334555666666666555432
Q ss_pred -HHHHHHHHHHHcCC-----------CCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHH---HHHHHHHHHhcCC
Q 036287 134 -LGRWIHSYMGKHRI-----------DLNH-IVGGALINMYSRCGDIDKALQVFEEMKERDVTT---YNSLIAGLAMHGR 197 (488)
Q Consensus 134 -~a~~~~~~~~~~g~-----------~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~ 197 (488)
...+-+..+...|- +++. .....++..+.+-..+ ....... .++... ....+.-+.+ .+
T Consensus 155 ~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d 229 (618)
T 1qsa_A 155 LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QD 229 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cC
Confidence 22222233333321 1111 1112222222211111 1111111 111111 1111222333 37
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHH
Q 036287 198 SIEAVEMFREMINQGIRPTKVTFVG----VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAY 273 (488)
Q Consensus 198 ~~~A~~l~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 273 (488)
.+.|..+|....... ..+...... +.......+...++...+...... .++.....-.+..-.+.|+++.|.
T Consensus 230 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 788888888876543 223322222 222333444344555555554321 233333334444445678999999
Q ss_pred HHHHhCCCCC-C-HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 274 DFITNMKIAP-D-HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 274 ~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
+.|+.|+..+ + ..-..-+..+....|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999885433 2 32233455577778999999998888875
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.95 E-value=0.077 Score=42.52 Aligned_cols=71 Identities=7% Similarity=-0.073 Sum_probs=48.3
Q ss_pred cChhhHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 251 PQIEHYGCIVDLLSRVG---RPEEAYDFITNM-KIA-P--DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
++..+.-.+.-++.+.+ ++++++.+++.. ... | +...+..|.-++.+.|++++|.+.++.+++.+|.+..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 45555555555566655 444666666555 222 3 24556667778899999999999999999999988543
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.24 Score=51.00 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=49.7
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
.-|...|+++.|..+.+++...-|.+..+|..|..+|...|+|+.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34677899999999999999999999999999999999999999999999987
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.49 E-value=0.19 Score=38.78 Aligned_cols=65 Identities=8% Similarity=-0.069 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHhCChhH---HHHHHHHHHhcC-C-CCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 283 PDHIMLGSLLSACKIHGKLQL---GEQIAKRLLDCR-S-ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 283 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|+..+--.+..++.+..+... ++.+++.+.+.+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 555555555544 2 1223444555555566666666665555544
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.43 E-value=0.19 Score=37.43 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-------CCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR-------SADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+..-+..|...+...++++.|...++.+++.. +..+..+..|+.+|.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556778889999999999999999998842 33456788999999999999999999999876
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.19 E-value=0.96 Score=40.46 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCC-CcHhHHHHHHHHHHh-----cCCHHHHHHHHHhccc--C--CHHHHHHHHHHHHhc-CChhHH
Q 036287 133 ELGRWIHSYMGKHRID-LNHIVGGALINMYSR-----CGDIDKALQVFEEMKE--R--DVTTYNSLIAGLAMH-GRSIEA 201 (488)
Q Consensus 133 ~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~-----~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~~~A 201 (488)
..++..++++++.... .+-..+..|...|.+ -|+.++|.+.|++..+ | ++.++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555555554311 024456666666666 3677777777776553 3 356666666666663 777777
Q ss_pred HHHHHHHHHcCCC
Q 036287 202 VEMFREMINQGIR 214 (488)
Q Consensus 202 ~~l~~~m~~~g~~ 214 (488)
.+.+++.+.....
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777777765544
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.92 E-value=0.72 Score=35.79 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=59.3
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHS 140 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 140 (488)
..||++......+-.+.. +....+..++....+|.-++-.+++..+... .+|++.....+.+||.+.|+..++.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 456666666666655432 3445566677777888888877777775443 46777777778888888888888888888
Q ss_pred HHHHcCCC
Q 036287 141 YMGKHRID 148 (488)
Q Consensus 141 ~~~~~g~~ 148 (488)
++-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 87777753
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.47 E-value=0.42 Score=37.86 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHhcccccC
Q 036287 179 ERDVTTYNSLIAGLAMHGRS------IEAVEMFREMINQGIRPTKV----TFVGVLNACSHGGLVDLGFEIFQSMTRDYG 248 (488)
Q Consensus 179 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 248 (488)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.--|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------------------- 68 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------------------- 68 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH--------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH--------------------
Confidence 45667777777777767777 6666666666654 555421 0111111110
Q ss_pred cccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 249 IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 249 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
. +...+++++|.++|+.+ .-+- +.+|-....--.++|++..|.+++.+.+.+.|.+.....
T Consensus 69 ---------~----~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 69 ---------E----LKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp ---------H----HHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred ---------H----HHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 0 11225666666666655 1111 677777777778889999999999999998877654443
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.46 E-value=3.2 Score=32.57 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHhCC---hhHHHHHHHHHHhcCCCC-chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 282 APDHIMLGSLLSACKIHGK---LQLGEQIAKRLLDCRSAD-SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 282 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.|+..+--.+..++.+..+ ..+++.+++.+....|.+ ......|+-+|.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566665556666666654 456777888887766643 33555677788888888888888888766
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.19 E-value=1.4 Score=35.01 Aligned_cols=55 Identities=13% Similarity=-0.038 Sum_probs=44.4
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
..+|.++|.++|+.+++....=+..|...+..-.+.|+...|.+++......+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3489999999999998864333566777777788999999999999998876654
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.98 E-value=7 Score=41.19 Aligned_cols=248 Identities=10% Similarity=-0.020 Sum_probs=131.7
Q ss_pred HHHHcCCHHHHHHHHhhcCC----CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC---HHH--HHHH--H
Q 036287 59 CYVEHGLVENAFEVFSRVKV----KDT--VCWTAMIDGLVRNGEMARALDLFREMQRDNV--RPN---EVT--IVCV--L 123 (488)
Q Consensus 59 ~~~~~g~~~~A~~~f~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~t--~~~l--l 123 (488)
|....|+.++++.+++.-.. .+. ..-..+.-+.+..|..++++.++.......- .-+ ... -..+ .
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34667888889998887654 222 2334445566677776778887777654320 001 111 1122 2
Q ss_pred HHHHhcCchHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhccc-CCHHH--HHHHHHHHHhcCCh
Q 036287 124 SACSQLGALELGRWIHSYMGKHRIDLNH--IVGGALINMYSRCGDIDKALQVFEEMKE-RDVTT--YNSLIAGLAMHGRS 198 (488)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~ 198 (488)
.++...++ +++...+..++...- +.. ....+|...|.-.|+-+....++..+.+ .+... .-++.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 22223333 344444444443221 111 2223445556677888777777776543 22222 23334445578899
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHH
Q 036287 199 IEAVEMFREMINQGIRPTKVTFV---GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 199 ~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
+.+..+.+.+... ..|. .-|. ++.-+|+..|+.....++++.+..+ ...++.-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9888888888763 1222 2222 3445788899988888888888752 223333333333344456777777777
Q ss_pred HHhCCCCCCHHHHH--HHHHHHHHhCCh-hHHHHHHHHHH
Q 036287 276 ITNMKIAPDHIMLG--SLLSACKIHGKL-QLGEQIAKRLL 312 (488)
Q Consensus 276 ~~~m~~~p~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~ 312 (488)
++.+....|..+-. .+.-+....|+. ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 76552222333322 222233333333 45555666554
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.91 E-value=0.46 Score=45.11 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh-----CCCccCCce
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE-----AGVQKEPGC 356 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 356 (488)
...++.++...|+.+++...++.+...+|-+...|..|+.+|.+.|+..+|++.|+...+ .|+.|.+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345667778889999999999999999999999999999999999999999999988743 488876654
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.61 E-value=0.00013 Score=69.35 Aligned_cols=156 Identities=10% Similarity=0.115 Sum_probs=92.7
Q ss_pred CChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036287 32 GEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN 111 (488)
Q Consensus 32 g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 111 (488)
++++.|.+.-++. +.+.+|..|..++...+++.+|++.|-+. .|+..|..+|....+.|.+++-++.+...++..
T Consensus 39 ~~ldRa~eyA~~~---n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ 113 (624)
T 3lvg_A 39 GNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 113 (624)
T ss_dssp CCSTTTTTSSSSC---CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC
T ss_pred cccHHHHHHHHHh---CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4555555443333 34668888888888888888887766443 455566777778888888888877776665542
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc------------
Q 036287 112 VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE------------ 179 (488)
Q Consensus 112 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------ 179 (488)
-.| ..=+.++-+|++.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+..
T Consensus 114 ke~--~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~ 184 (624)
T 3lvg_A 114 RES--YVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 184 (624)
T ss_dssp CST--TTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCS
T ss_pred ccc--ccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 222 333456777777777654333321 23333334455555556666666555554431
Q ss_pred ------------CCHHHHHHHHHHHHhcCChhHH
Q 036287 180 ------------RDVTTYNSLIAGLAMHGRSIEA 201 (488)
Q Consensus 180 ------------~~~~~~~~li~~~~~~g~~~~A 201 (488)
.++.+|-.+-.+|...+.+.-|
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHH
Confidence 2555676666666665554443
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.43 E-value=1 Score=34.58 Aligned_cols=72 Identities=7% Similarity=-0.058 Sum_probs=41.7
Q ss_pred cChhhHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhH
Q 036287 251 PQIEHYGCIVDLLSRVGRPEE---AYDFITNM-KIA-P--DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 322 (488)
|+..+--.+.-++.+.....+ ++.+++.. ... | .......|.-++.+.|+++.|.+.++.+++..|.|..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 333333344444444444333 44444444 111 2 123344566678888999999999999999999885443
No 241
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.82 E-value=4.4 Score=29.37 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=48.1
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036287 57 INCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 120 (488)
++.+...|++++|..+.+.+..||.+.|-+|.. .+.|..+++..-+.++...| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 355678899999999999999999999988765 47888888888887887776 45555554
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.46 E-value=4.7 Score=29.24 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=47.1
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036287 57 INCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 120 (488)
++.+...|++++|..+.+.+..||.+.|-+|... +.|..+++..-+.++...| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3556788999999999999999999999887654 6788888888777777776 45555543
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.05 E-value=6.3 Score=43.16 Aligned_cols=163 Identities=9% Similarity=0.042 Sum_probs=87.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 036287 56 MINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELG 135 (488)
Q Consensus 56 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 135 (488)
++..+.+.+..+-|.++..-.+ .+..+--.+..+|...|++++|.+.|++.-. |+..+.... .....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~~- 884 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLRE- 884 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHHH-
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhcc-
Confidence 4444555566665555444333 2333334455666667777777777765421 221111000 00000
Q ss_pred HHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCH----HHHHHHHHHHHhcCChhHHHHHH
Q 036287 136 RWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDKALQVFEEMK----ERDV----TTYNSLIAGLAMHGRSIEAVEMF 205 (488)
Q Consensus 136 ~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~l~ 205 (488)
+..+.... ...-..-|.-++..+.+.|.++.+.+.-.... ..+. ..|..+..++...|++++|...+
T Consensus 885 ---~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 885 ---FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp ---HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ---cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00011100 01122346667777888887777765544322 2222 25888899999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 036287 206 REMINQGIRPTKVTFVGVLNACSHGGLVDLG 236 (488)
Q Consensus 206 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 236 (488)
..+-....+ ...+..|+..++..|..+.-
T Consensus 962 ~~~pd~~~r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 962 MVLSTTPLK--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHSSSC--HHHHHHHHHHHHHHCCHHHH
T ss_pred HhCCCHHHH--HHHHHHHHHHHHhCCChhhh
Confidence 888764333 44566677766666665443
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.98 E-value=16 Score=33.42 Aligned_cols=180 Identities=13% Similarity=0.053 Sum_probs=104.3
Q ss_pred HHHhcCCh---HHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036287 27 LYGKCGEF---KDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDL 103 (488)
Q Consensus 27 ~y~~~g~~---~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 103 (488)
.-...|++ =+|.+. +-++..-|.+.+++++|++++-. -...+.+.|+...|-++
T Consensus 21 ~~I~~G~y~~~YEAHQ~------------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQE------------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHCCHHHHHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHhCCCCccccHHHHH------------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 33456777 455554 34566678888888888887543 23345666776665554
Q ss_pred H----HHHHHCCCCCCHHHHHHHHHHHHhcCc--hHH---HHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 104 F----REMQRDNVRPNEVTIVCVLSACSQLGA--LEL---GRWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 104 ~----~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~---a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
- +-+.+.++++|..+...++..+..... .+. ..+...+-.+.| ..-|+.....+...|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 444556788888877777777665543 221 122223333333 33467788889999999999999999
Q ss_pred HHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 173 VFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 173 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.|---.++++..+..|+.-+...+...++ |...-.+++. |.-.+++..|..+++...
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 88532222335665555444444332221 1122222332 444567777776655544
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.84 E-value=3.3 Score=32.01 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCCC-chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 303 LGEQIAKRLLDCRSAD-SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 303 ~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+++.+++.+.+.+|.. ......|+-++.+.|++++|.+..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555555555544422 23344455555555555555555555543
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.22 E-value=15 Score=34.54 Aligned_cols=128 Identities=12% Similarity=-0.006 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHcC--C--CCcHhHHHHHHHHHHhcC-CHHHHHHHHHhccc---CCHHHH---
Q 036287 117 VTIVCVLSACSQLGALELGRWIHSYMGKHR--I--DLNHIVGGALINMYSRCG-DIDKALQVFEEMKE---RDVTTY--- 185 (488)
Q Consensus 117 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~--- 185 (488)
.....+...|.+.|+.++..+++......- + .....+...|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666655443210 0 011223345555555432 22222222222221 111112
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 186 ---NSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV-----TFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 186 ---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.-++..|...|++.+|.+++.++.+.=-+.|.. .+..-+..|...+++.++...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 134555666666666666666665431111111 12222334445555555555555443
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.70 E-value=19 Score=34.53 Aligned_cols=185 Identities=10% Similarity=0.110 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc-CCCCcHhH--HHHHHHHHHhcCC
Q 036287 95 GEMARALDLFREMQR-----DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RIDLNHIV--GGALINMYSRCGD 166 (488)
Q Consensus 95 g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~--~~~li~~y~~~g~ 166 (488)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+. |..+...+ .+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 789999988866654 234456777888999999999999988877766543 43222211 1222232222332
Q ss_pred HH--HHHHHHHhccc---C-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhc
Q 036287 167 ID--KALQVFEEMKE---R-------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK-----VTFVGVLNACSH 229 (488)
Q Consensus 167 ~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~ 229 (488)
.+ .-..+.+.... . .......|...|...|++.+|.+++..+...-...+. ..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22333333322 1 1123456778899999999999999998753222222 345566778999
Q ss_pred cCCHHHHHHHHHhcccc-cCc--ccC--hhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 230 GGLVDLGFEIFQSMTRD-YGI--EPQ--IEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~-~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
.+++.+|..++.++... ... .|+ ...|.+++..+...+++.+|.+.|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999887531 111 222 356678888888899999988876654
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.51 E-value=2 Score=31.33 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
+.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.+..+ ..+....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44566666777777777888888888888888888888888888887753 3333445666554
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.20 E-value=5.1 Score=29.20 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=36.7
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 278 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|..++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3467788999999999999999999999999888764333334566554
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.15 E-value=41 Score=35.50 Aligned_cols=263 Identities=10% Similarity=0.052 Sum_probs=146.3
Q ss_pred HHhcCChHHHHHHHhhCCCC---Ccee--eHHHHHHHHHHcCCHHHHHHHHhhcC-CCC----------HHHHHHHHHHH
Q 036287 28 YGKCGEFKDAMQLFDEMPEC---NDVV--ASTVMINCYVEHGLVENAFEVFSRVK-VKD----------TVCWTAMIDGL 91 (488)
Q Consensus 28 y~~~g~~~~A~~~~~~m~~~---~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~-~~~----------~~~~~~li~~~ 91 (488)
....|+.+++..+++.-... ++.. .-..+.-+...+|..+++..++.... .++ +..-.+|.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34567888888888876652 2222 22333445566776667777665533 222 12223344444
Q ss_pred HHcCC-HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 036287 92 VRNGE-MARALDLFREMQRDNVRPNE--VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID 168 (488)
Q Consensus 92 ~~~g~-~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 168 (488)
+-.|. -+++.+.+..+.... .+.. ..-.++...+...|+.+....++..+.+.. ..++.-..++.-+..-.|+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 44443 346677777766542 1111 111223334556788888888888877642 222222223333344678888
Q ss_pred HHHHHHHhccc-CCHH-HHH---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 169 KALQVFEEMKE-RDVT-TYN---SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 169 ~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
.+..+.+.+.. .|.. -|. ++.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.+++..+
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 88877777663 3433 333 3345677888887777788888864 2222222222223344466667777777776
Q ss_pred ccccCcccChhhHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036287 244 TRDYGIEPQIEHYGCIVDLLSRVGRP-EEAYDFITNMKIAPDHIMLGSLLSAC 295 (488)
Q Consensus 244 ~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~~~ll~~~ 295 (488)
.+ ...|.+..-.++.-+....|.. .+|.+++..+...+|..+-..-+.++
T Consensus 621 ~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 621 SK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp GG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred Hh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 64 2356665555565566666664 57888888885556655544444444
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.13 E-value=22 Score=32.40 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMF----REMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
+.++..=|.+.+++++|.+++-.- ...+.++|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 445666688899999998876442 23455667665555544 445567788888877777777665
Q ss_pred cCCHHHH-HHHHHhccc---ccC--cccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhH
Q 036287 230 GGLVDLG-FEIFQSMTR---DYG--IEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQL 303 (488)
Q Consensus 230 ~g~~~~a-~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 303 (488)
...-+-. ..+.+.+.+ ++| -.-|+.....+...|.+.+++.+|...|- .+..+.+..+..++..+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCcc
Confidence 4431111 112222211 112 22356677788899999999999998874 3444445677666666555443222
Q ss_pred HHHHHHHHHhcCCCCchhHH-HHHHHHhcCCChHHHHHHHHHHHh
Q 036287 304 GEQIAKRLLDCRSADSGTYV-LLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 304 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+ ..|. ..+--|.-.++...|..+++...+
T Consensus 186 ~---------------dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A---------------PLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 2222 234456777899999988877664
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.96 E-value=4.6 Score=38.10 Aligned_cols=69 Identities=10% Similarity=0.138 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccc----ccCcccChhh
Q 036287 186 NSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTR----DYGIEPQIEH 255 (488)
Q Consensus 186 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 255 (488)
..++..+...|++.+|+..+..+... -+-++..+..++.++...|+..+|++.|+.+.+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666677777777777766654 244666677777777777777777777666543 2355555443
No 253
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.47 E-value=0.005 Score=58.81 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...|..|..++...++..+|++.|- +. -|+..|..++.++.+.|.++.-..++....+..- ++.+-+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 4568899999999999999988762 22 2566788999999999999999999888877643 34455689999
Q ss_pred HHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 161 YSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
|++.|++.+-++.+. .+|+.-.....+-+...|.++.|.-+|..+-. |..|...+.+.|++..|.+.-
T Consensus 126 yAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTT
T ss_pred HHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHH
Confidence 999998765443322 35665566677778888888888777765322 334555667777776665432
Q ss_pred HhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
++ .-++.+|-.+-.+|...+.+.-|.-.--.+-+.|| -...++.-|-..|-+++-+.+++..+.+.....+
T Consensus 194 rK-------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 194 RK-------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp TT-------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred Hh-------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 22 34577888888899998888766443332212221 1123445577888899999999999888877888
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHH
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
.|.-|+-.|++- +.++..+.++.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHH
Confidence 999999888887 44555554443
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.12 E-value=13 Score=30.04 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=69.5
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC-----CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK-----VKDT-------VCWTAMIDGLVRNGEMARALDLFREMQRD--NVRPN 115 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~ 115 (488)
..++-.-+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++.+|...|++.++. .+.-+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445555777788888888887776643 2332 25566777888888888888888886432 11111
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHH
Q 036287 116 EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTT 184 (488)
Q Consensus 116 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~ 184 (488)
..+..++-. ...... ......+..+---+..+|.+.|+.++|+.+++.++. ++...
T Consensus 100 ~s~~~~~~~---~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 100 SKVRPSTGN---SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred CCccccccc---cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 111111100 000000 011234556666688899999999999999998864 44443
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.78 E-value=11 Score=38.77 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=30.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
+...|+++-|+++-++.... .|+ -.||..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44556666666666666553 333 445666666666666666666666655
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.71 E-value=29 Score=37.90 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCH
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 97 (488)
...++..+.+.+..+.|.++....+..+ ..--.+..+|..+|++++|.+.|.+.... +... ....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~--~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l----------~~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSDP--IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ----------FAVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCCH--HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS----------CSSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCCc--HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh----------hhhh
Confidence 4456777778899998988877665533 33345567789999999999999886421 1000 0000
Q ss_pred HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHH
Q 036287 98 ARALDLFREMQRDN--VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN----HIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 98 ~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~ 171 (488)
.. +..+.... ...-..-|.-++..+.+.+.++.+.++-..+++...+.+ ...|..+.+.+...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 11111110 111234466677777777777777777666665432222 225777888889999999999
Q ss_pred HHHHhcccC--CHHHHHHHHHHHHhcCChhHHH
Q 036287 172 QVFEEMKER--DVTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 172 ~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 202 (488)
..+-.++.. -......++...+..|+.+.-+
T Consensus 959 ~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 959 VALMVLSTTPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 888877653 3456777888888887765433
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.66 E-value=4.4 Score=32.68 Aligned_cols=112 Identities=8% Similarity=-0.002 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc-----CCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH-HHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE-----RDV-------TTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKV-TFVG 222 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-t~~~ 222 (488)
=+......|.++.|+-+.+.+.. +++ .+...+.+++...|++..|...|++.++.. .-|... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35566677888888777665432 332 245566777888888888888888865421 111111 1111
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIA 282 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 282 (488)
+-. ...... .....++.+.---+..+|.+.+++++|+.+++.+|.+
T Consensus 106 ~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 100 000000 0012233444445677788888888888888887533
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.17 E-value=13 Score=26.89 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=60.0
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
..-++|.-|-+.+...+- ...+--.-+......|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777766653 33333333455677899999999999888899999987755 46788888877777777
Q ss_pred HcCCCCCHHHHH
Q 036287 210 NQGIRPTKVTFV 221 (488)
Q Consensus 210 ~~g~~p~~~t~~ 221 (488)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 44444443
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.19 E-value=15 Score=26.74 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=58.5
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
..-++|.-|-+.+...+- ...+--.-+......|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777766653 33333333455677899999999998888899999887755 45677777777776776
Q ss_pred HcCCCCCHHHHH
Q 036287 210 NQGIRPTKVTFV 221 (488)
Q Consensus 210 ~~g~~p~~~t~~ 221 (488)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 654 44444443
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.93 E-value=25 Score=29.24 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=31.1
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQL 129 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 129 (488)
...-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.+.. ++...+.++.. .+|...-...+.+....
T Consensus 33 ~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQI 108 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 333333444444444433333333333444444444444444444432 22222323222 23444444444444444
Q ss_pred Cc
Q 036287 130 GA 131 (488)
Q Consensus 130 ~~ 131 (488)
++
T Consensus 109 ~~ 110 (211)
T 3ltm_A 109 GD 110 (211)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.68 E-value=4.7 Score=31.11 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
+.-+..+-++.+....+.|+.....+.|.+|.+.+++..|..+|+.++.+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34456666667777778888888888899999999999999988888753 3444556666654
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.55 E-value=41 Score=30.38 Aligned_cols=179 Identities=13% Similarity=0.119 Sum_probs=107.4
Q ss_pred HhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHH----H
Q 036287 29 GKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDL----F 104 (488)
Q Consensus 29 ~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~ 104 (488)
...|++=+|.+.+ .++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .
T Consensus 24 I~~G~yYEAhQ~~------------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 24 IKAGDYYEAHQTL------------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHTCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhccChHHHHHHH------------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHH
Confidence 3456666665553 4666777888888888887643 23345667777666554 4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC--c---hHHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 105 REMQRDNVRPNEVTIVCVLSACSQLG--A---LELGRWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 105 ~~m~~~g~~p~~~t~~~ll~~~~~~~--~---~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
+-..+.++++|......++..+.... . ..-..+......+.| ..-++.....+...|.+.|++.+|+..|-.-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 44456678888888877777765533 1 222333444444443 2246788888999999999999999888633
Q ss_pred ccCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 178 KERDVTTYNSLIAGLAMH---GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 178 ~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
...|...+..|+.-+... |...++--.+- .+++ -|.-.+++..|..+|+...+
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 323455555555544443 44333221111 1222 23446778888777776543
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.07 E-value=25 Score=30.91 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=25.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 193 AMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.+.|..++|+.....-++. -+-|...-..++..++-.|+++.|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455555555555555443 12233333344455555555555555555444
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.60 E-value=31 Score=28.58 Aligned_cols=143 Identities=12% Similarity=0.045 Sum_probs=89.4
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRN 94 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 94 (488)
.+|..+-...+..+.+.|..+....+.+.+..++ ...-...+.++.+.|+.+....+.+.+..+|...-...+.++.+.
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDED-AWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6777777778888888887555555555555544 666677778888888766555666667778877777777778777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
++.+ +...+.++.. .|+...-...+.+....++.+.. ..+..+.+ .++..+-...+.+..+.+.
T Consensus 109 ~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 109 GDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERAV-EPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp CCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred CcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7753 4455555543 35666666667777766654322 22222222 3444555555555555554
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.48 E-value=44 Score=30.18 Aligned_cols=168 Identities=9% Similarity=-0.037 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHHh
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEM----FREMINQGIRPTKVTFVGVLNACS 228 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 228 (488)
.+.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455666788888899888876542 2345566776665554 444555678888888777777765
Q ss_pred ccCC--------HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHh--
Q 036287 229 HGGL--------VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIH-- 298 (488)
Q Consensus 229 ~~g~--------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-- 298 (488)
.... +.+|...-...-. .-.-++.....+...|.+.|++.+|...|- .+-.-+...+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcC
Confidence 5321 1222222222211 012356778888899999999999988775 22111355666665555444
Q ss_pred -CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 299 -GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 299 -g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
|...++--. ....+--|.-.|+...|..+++...++
T Consensus 181 ~~~~~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 181 DIEDSTVAEF--------------FSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCCHHHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCcchHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 433332111 112233466778999999998877543
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.80 E-value=14 Score=28.54 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=39.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 273 YDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 273 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
+.-+-.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|..++
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 333334467889999999999999999999999999988764333345566554
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.32 E-value=54 Score=30.71 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=51.9
Q ss_pred ccChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHH---HHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 250 EPQIEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHIML---GSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 250 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
.|....+..|+.+| +.+++.+..++++.. .+..|.... ..|.... -...+.++ ..|-...++..
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I--------r~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM--------LEQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH--------HHHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--------HHHHHHHH--hHhhceeeHHH
Confidence 45566666666665 456787777777765 244454421 1111111 11112222 24666677777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
+...+.- ..++++..+-+|...|.-
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 7777654 678999999999887753
No 268
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=74.47 E-value=44 Score=30.19 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=42.6
Q ss_pred CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 280 KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 280 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+++|. ..+..+-+..+.+++|+..|..+.+++++++|... ..++|.+++..-.+.+
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 56664 45677778888999999999999999999998532 3466777777766543
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.00 E-value=27 Score=26.92 Aligned_cols=66 Identities=11% Similarity=-0.108 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 036287 113 RPNEVTIVCVLSACSQLGA---LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
.|+..|-.....++.++.+ ..+|..++..+.+.+........--|.-++.+.|+++.|++..+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555555555555555543 34566666666655421123333334455555666666665555544
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.15 E-value=7.4 Score=34.20 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
.+.+.|++++|+..+..- +-.| |...-..|+..++..|++++|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455677788777766554 3344 55666667777788888888888888888877754
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.87 E-value=49 Score=27.06 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHHhcCc
Q 036287 115 NEVTIVCVLSACSQLGA 131 (488)
Q Consensus 115 ~~~t~~~ll~~~~~~~~ 131 (488)
+...-...+.+....++
T Consensus 89 ~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333333334433333
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.79 E-value=49 Score=27.05 Aligned_cols=153 Identities=12% Similarity=0.019 Sum_probs=95.0
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHH
Q 036287 6 HGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWT 85 (488)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~ 85 (488)
+..+++.=-.+|..+-...+..+.+.|..+....+.+.+..++ ...-...+.++.+.|+.+....+.+.+..++...-.
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~ 94 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDED-AWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQ 94 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHH
Confidence 4455555456788888888888888887666666666665544 666666777888888776666666667777877777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
..+.++.+.++.+ +...+..+.. .+|...-...+.+....++.+.. ..+..+.+ .++..+-...+.+..+.|
T Consensus 95 ~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 95 SAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERAV-EPLIKALK---DEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 7777777777654 4444444443 35666666667777666654322 22222222 245555555555555555
Q ss_pred CH
Q 036287 166 DI 167 (488)
Q Consensus 166 ~~ 167 (488)
..
T Consensus 167 ~~ 168 (201)
T 3ltj_A 167 GE 168 (201)
T ss_dssp SH
T ss_pred ch
Confidence 43
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.63 E-value=46 Score=33.67 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=50.3
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCC----------------hhHHHHHHHHHHh-------cCC
Q 036287 261 DLLSRVGRPEEAYDFITNMKIAPD-HIMLGSLLSACKIHGK----------------LQLGEQIAKRLLD-------CRS 316 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~----------------~~~a~~~~~~~~~-------~~p 316 (488)
.-+...|++++|..++.-.+-... ..+.+.+++-....-+ ...|..+.+.... ..+
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~ 530 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHV 530 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCH
T ss_pred HHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccH
Confidence 355578999999999988862211 3445555554443221 1233333333221 112
Q ss_pred CCchhHHHHHHH-----HhcCCChHHHHHHHHHHHhCCCcc
Q 036287 317 ADSGTYVLLSNA-----YASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 317 ~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
.+..++..|+.. +...|+|+.|++.++++ ++-|
T Consensus 531 ~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llP 568 (661)
T 2qx5_A 531 KNKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLP 568 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC
Confidence 234456655543 37899999999877764 4554
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=67.08 E-value=43 Score=26.15 Aligned_cols=66 Identities=11% Similarity=-0.108 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 036287 113 RPNEVTIVCVLSACSQLGA---LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
.|+..+-.....++.++.+ ..++..+++.+.+.+........--|.-+|.+.|++++|++..+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4666666666666665553 44666677776665422222233334455555666666555555544
No 275
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.86 E-value=90 Score=29.75 Aligned_cols=195 Identities=10% Similarity=0.067 Sum_probs=116.0
Q ss_pred CCHHHHHHHHhhcC-----CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH----Hhc
Q 036287 64 GLVENAFEVFSRVK-----VK----DTVCWTAMIDGLVRNGEMARALDLFREMQR-DNVRPNEVTIVCVLSAC----SQL 129 (488)
Q Consensus 64 g~~~~A~~~f~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~----~~~ 129 (488)
|+++.|.+.+-.+. .. .......++..|...|+++...+.+..+.+ .|..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 67888887765443 11 344677899999999999999887776654 3433332 23333333 333
Q ss_pred CchHHHHH--HHHHHH--HcC-CCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhccc----C-C----HHHHHHHHHHH
Q 036287 130 GALELGRW--IHSYMG--KHR-IDL---NHIVGGALINMYSRCGDIDKALQVFEEMKE----R-D----VTTYNSLIAGL 192 (488)
Q Consensus 130 ~~~~~a~~--~~~~~~--~~g-~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~~ 192 (488)
...+.... +...+. ..| +-. ...+...|...|...|++.+|.+++.++.. . + +..+..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332221 111111 111 111 234456789999999999999999998763 1 1 34677778889
Q ss_pred HhcCChhHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhc
Q 036287 193 AMHGRSIEAVEMFREMIN----QGIRPTK--VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV 266 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 266 (488)
...+++..|..++++... ....|+. ..+...+..+.+.+++.+|.+. |..+...+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhccccc
Confidence 999999999999998753 2122221 2233444455556666555443 44455566666
Q ss_pred CChHHHHHHH
Q 036287 267 GRPEEAYDFI 276 (488)
Q Consensus 267 g~~~~A~~~~ 276 (488)
++.......+
T Consensus 252 ~d~~~~~~~L 261 (445)
T 4b4t_P 252 SDEAKWKPVL 261 (445)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6655444433
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.06 E-value=21 Score=33.98 Aligned_cols=93 Identities=6% Similarity=0.009 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--CCCchh----H
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-----KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR--SADSGT----Y 322 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~----~ 322 (488)
.+...+.+.|.+.|++++|.+.+.++ +..--...+-.++..+...+|+..+...+.++.... ..++.. .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35556777777777777777777776 222225566667777777788887777777775531 122221 1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHH
Q 036287 323 VLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 323 ~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
..-+..+...++|.+|.+.|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 122334456677777777766543
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.69 E-value=58 Score=27.13 Aligned_cols=87 Identities=9% Similarity=0.059 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHh--cCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCCceeEEEECC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLD--CRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNN 363 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 363 (488)
..|-..+..| ..++...+..+|..|.. .+..-+..|...+..+...|++.+|.++|+.=.+.+-.|
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P----------- 148 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP----------- 148 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-----------
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----------
Confidence 4455555544 23446688889988877 456667788899999999999999999998877776654
Q ss_pred EEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcc
Q 036287 364 EIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYS 398 (488)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 398 (488)
.+...+...+...+|...+++
T Consensus 149 --------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 149 --------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred --------------HHHHHHHHHHHHHHHHhcCCC
Confidence 123334455677778777773
No 278
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=65.14 E-value=2.1 Score=24.82 Aligned_cols=13 Identities=46% Similarity=1.255 Sum_probs=10.0
Q ss_pred ccc-ccCccCCCCC
Q 036287 475 HHF-ENGTCSCGDY 487 (488)
Q Consensus 475 h~~-~~g~csc~~~ 487 (488)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 6899999976
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=64.56 E-value=32 Score=32.55 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCchhh--HHHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhh
Q 036287 5 IHGQVLKLGLRSNRST--RLKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSR 75 (488)
Q Consensus 5 i~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~ 75 (488)
+...+++.|..|+... ..+.+...++.|+.+-+.-+++.-...+ +..-+ +.+...++.|+.+-+.-+++.
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHHhC
Confidence 4455555555544321 2233444455566666655555432211 01111 223333455666555555554
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=62.46 E-value=36 Score=27.00 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 036287 53 STVMINCYVEHGLVENAFEVFSRVKVKD---TVCWTAMIDGLVRNGE--MARALDLFREMQRDNVRPNEV 117 (488)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 117 (488)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3556777777777777777777776552 2233444444444322 345667777777766544433
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.46 E-value=33 Score=32.61 Aligned_cols=96 Identities=5% Similarity=-0.065 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc---CCCCcHhH--HH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRD--NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH---RIDLNHIV--GG 155 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~--~~ 155 (488)
++..+...|.+.|++++|.+.|.++... +..--...+..+++.+...+++..+......+... +-.++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888899999999999999998864 22333567778888999999999999888887542 32333211 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc
Q 036287 156 ALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
.-.-.+...+++..|...|-+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 12233456789999988887654
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.15 E-value=81 Score=27.07 Aligned_cols=55 Identities=9% Similarity=-0.065 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---ceeeHHHHHHHHHHcCCHHHHHHHHhhc
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECN---DVVASTVMINCYVEHGLVENAFEVFSRV 76 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~ 76 (488)
.++.+...++.|+++....+++.-...+ +..-+ +.+...+..|+.+-+..+++.-
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHHHHTT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHHHHcC
Confidence 3455666677888888877777644322 11112 3344445667777666666653
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.76 E-value=44 Score=25.54 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHH
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKERD---VTTYNSLIAGLAMHGR--SIEAVEMFREMINQGIRPTKV 218 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 218 (488)
...++.-|...|+.++|...++++..|. .....++..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3567777888888888888888887552 2344445555554432 345667777777666544433
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.46 E-value=1.3e+02 Score=28.12 Aligned_cols=302 Identities=13% Similarity=0.112 Sum_probs=148.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCC
Q 036287 22 LKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 22 ~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 96 (488)
.+.+...+..|+++-+..+++.-...+ +.... +.+...+..|+.+-+..+++.-... +..-++. +...+..|+
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~ 92 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGH 92 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCC
Confidence 445666778899999999988644332 12222 3445556788988888888764322 2222223 333455666
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHH
Q 036287 97 MARALDLFREMQRDNVRPNEV--TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNH--IVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~ 172 (488)
.+-+.-+ .+.|..|+.. .-.+.+...+..|+.+.+..+++ .+..++. ....+.+...+..|+.+-+..
T Consensus 93 ~~~v~~L----l~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 164 (437)
T 1n11_A 93 TNMVKLL----LENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRVAEL 164 (437)
T ss_dssp HHHHHHH----HHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH----HhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 6544333 3444443321 11123444556677776665554 3322211 111223455567888888877
Q ss_pred HHHhcccCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHhcccc
Q 036287 173 VFEEMKERDV---TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV---TFVGVLNACSHGGLVDLGFEIFQSMTRD 246 (488)
Q Consensus 173 ~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 246 (488)
+++.-..++. ..++. +...+..|+.+ +++.+.+.|..|+.. ..+ .+...+..|..+-+..+++.
T Consensus 165 Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~---- 234 (437)
T 1n11_A 165 LLERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLLQY---- 234 (437)
T ss_dssp HHHTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHHHT----
T ss_pred HHhCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHc----
Confidence 7775443221 11222 23334556653 444455555544332 122 23334456777766666653
Q ss_pred cCcccC---hhhHHHHHHHHHhcCChHHHHHHHHhCCCCC---CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 247 YGIEPQ---IEHYGCIVDLLSRVGRPEEAYDFITNMKIAP---DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 247 ~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
|..++ ..-.+ .+...+..|..+-...+++.- ..+ +..-++.| ......|+.+.+..+++.-...+..+..
T Consensus 235 -g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 310 (437)
T 1n11_A 235 -GGSANAESVQGVT-PLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKHGVMVDATTRM 310 (437)
T ss_dssp -TCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred -CCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCccCCCCCCC
Confidence 22222 11112 223344667766655555542 122 22222223 3344677777666666654444433322
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhCCCcc
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
-...| ...+..|+.+-+ +.+.+.|..+
T Consensus 311 g~t~L-~~A~~~g~~~~v----~~Ll~~gad~ 337 (437)
T 1n11_A 311 GYTPL-HVASHYGNIKLV----KFLLQHQADV 337 (437)
T ss_dssp CCCHH-HHHHHSSCSHHH----HHHHHTTCCT
T ss_pred CCCHH-HHHHHcCcHHHH----HHHHhcCCCC
Confidence 22233 233456666544 4444556543
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.71 E-value=69 Score=27.54 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=9.8
Q ss_pred HHHHHHhCChhHHHHHHH
Q 036287 292 LSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~ 309 (488)
+......|+.+....+++
T Consensus 223 L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 333445677666555554
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.56 E-value=74 Score=27.30 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 86 AMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
--++.+....++++|..+.++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356678888889999888877654
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.15 E-value=1.3e+02 Score=32.02 Aligned_cols=48 Identities=4% Similarity=-0.108 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcC
Q 036287 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNH----IVGGALINMYSRCG 165 (488)
Q Consensus 118 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g 165 (488)
-|..++..+-+.+.++.+.++-+.+++.--+.|. .+++.+..+++..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677777788888888888777777764322232 35566666665544
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.89 E-value=77 Score=24.14 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 036287 53 STVMINCYVEHGLVENAFEVFSRVKVKD---TVCWTAMIDGLVRNGE--MARALDLFREMQRDNVRPNEVT 118 (488)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 118 (488)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3566777777788888888888776552 2233444444444432 3556777777777765544333
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=51.67 E-value=2e+02 Score=28.82 Aligned_cols=305 Identities=10% Similarity=0.014 Sum_probs=157.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC
Q 036287 20 TRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 20 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 96 (488)
.-+.-+..+.+.+++......+.. + +.+...--....+....|+.++|......+- .......+.|+..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC
Confidence 344556667778888888887766 3 3335555566677788898776666555432 2235566777777777665
Q ss_pred HHH--HHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh---HHHHHHHH
Q 036287 97 MAR--ALDLFREMQRDN-----------VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI---VGGALINM 160 (488)
Q Consensus 97 ~~~--A~~~~~~m~~~g-----------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~ 160 (488)
... ...=+..+...| ++++.......+.+..+ +...+.... .. ..++.. +....+.-
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~--~p~~~~~~~---~~--~~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN--NPNTVLTFA---RT--TGATDFTRQMAAVAFAS 224 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH--CGGGHHHHH---HH--SCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh--ChHhHHHHH---hc--cCCChhhHHHHHHHHHH
Confidence 433 222223333333 12222111111111111 111111111 11 122221 11112222
Q ss_pred HHhcCCHHHHHHHHHhccc---CCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 161 YSRCGDIDKALQVFEEMKE---RDVT----TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~---~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
..+ .+.+.|...|....+ -+.. .+..+...+...+...++...+...... .++.....-.+..-.+.|++
T Consensus 225 lar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCH
T ss_pred HHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCH
Confidence 333 378999999987753 2322 2333333344445466777777776553 33333333333334467999
Q ss_pred HHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
+.|...|..|... ......-.--+..++...|+.++|..+|+.+.-.. +|..++.+- +.|..-.. ....
T Consensus 302 ~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~---~fYg~lAa~-~Lg~~~~~-----~~~~ 370 (618)
T 1qsa_A 302 RGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR---GFYPMVAAQ-RIGEEYEL-----KIDK 370 (618)
T ss_dssp HHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SHHHHHHHH-HTTCCCCC-----CCCC
T ss_pred HHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---ChHHHHHHH-HcCCCCCC-----CCCC
Confidence 9999999999752 12234434456778888999999999999984222 444444322 22321000 0000
Q ss_pred cCCCCch-----hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 314 CRSADSG-----TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 314 ~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
..+.... .-...+..+...|....|...+..+.+
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 0110110 122334567778888888877776654
No 290
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=50.14 E-value=8.9 Score=27.06 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=33.1
Q ss_pred CccHHHHHHHHHHHHHHHHHcCccCCCcccccccchhhhhhhhhhchHHHHHHHh
Q 036287 375 HPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERLAICYG 429 (488)
Q Consensus 375 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~ 429 (488)
.+...+++..+++-..+++..|+.||...+-.. ...+-+|.+-..||
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~G~e--------ayef~~e~v~~e~g 58 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILFGRE--------AYNFLSNLLKKEME 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEECHH--------HHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEcHH--------HHHHHHHHHhHhhc
Confidence 356778888889999999999999998765322 22334555555565
No 291
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=48.68 E-value=82 Score=26.14 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=39.4
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHcCCC
Q 036287 86 AMIDGLV---RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA-----LELGRWIHSYMGKHRID 148 (488)
Q Consensus 86 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~ 148 (488)
-+|+++. +-.+++.|+-.+-+|++.| .|.-..-..++-+.-..|. +..|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455554 4578999999999999998 6665555566666655553 23444445555555543
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.64 E-value=1.7e+02 Score=26.90 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHhcccccCcccChhhHHHHH
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL--VDLGFEIFQSMTRDYGIEPQIEHYGCIV 260 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 260 (488)
.+.++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+...+++..+... ++-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHHHHHHH
Confidence 456666677777777777777766421111 12233344444444332 34455666665543 4443333333333
No 293
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.94 E-value=74 Score=28.66 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=42.0
Q ss_pred CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 280 KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 280 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+++|. ..+..+-+..+.+++|+..|..+.+++++++|+.. ..++|.+++..-.+.+
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 55554 45667778888999999999999999999987532 2356778777776554
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.27 E-value=45 Score=26.40 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCH
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKERD---VTTYNSLIAGLAMHGR--SIEAVEMFREMINQGIRPTK 217 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 217 (488)
...++.-|...|+.++|...++++..|. .....++..++-+.++ -+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567777888888888888888886552 2344445555554332 34566777777766654433
No 295
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.64 E-value=88 Score=27.37 Aligned_cols=92 Identities=7% Similarity=-0.009 Sum_probs=47.2
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHH
Q 036287 259 IVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEA 338 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 338 (488)
.+...+..|+.+-+..+++.-....+...-.+.+...+..|+.+.+..+++.-...+..+..-....+...+..|..
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~--- 208 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI--- 208 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH---
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH---
Confidence 34444566777666666655422222212233444555778888888777776665533322222212222334443
Q ss_pred HHHHHHHHhCCCccCC
Q 036287 339 VQIRAKMKEAGVQKEP 354 (488)
Q Consensus 339 ~~~~~~m~~~g~~~~~ 354 (488)
++.+.+.+.|..++.
T Consensus 209 -~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 -EMLQALFKYDINIYS 223 (285)
T ss_dssp -HHHHHHTTSCBCSTT
T ss_pred -HHHHHHHHcCCCCCC
Confidence 455566677776543
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=45.43 E-value=35 Score=28.76 Aligned_cols=205 Identities=10% Similarity=0.016 Sum_probs=85.7
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHH
Q 036287 24 LVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGEMA 98 (488)
Q Consensus 24 li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~ 98 (488)
.+...++.|+.+-...+++.-...+ +..-++ .+...+..|+.+-+..+++.-..+ +...++. +...+..|+.+
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~ 91 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKGHYE 91 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTTCHH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHH
Confidence 3444556666666666665433221 111122 233344566666666666543221 2221222 22233445544
Q ss_pred HHHHHHHHHHHCC-CCCC---HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh--HHHHHHHHHHhcCCHHHHHH
Q 036287 99 RALDLFREMQRDN-VRPN---EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI--VGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 99 ~A~~~~~~m~~~g-~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~ 172 (488)
-+ +.+.+.| ..++ ..-. +.+...+..|+.+..+ .+.+.|..++.. ...+.+...+..|+.+-+..
T Consensus 92 ~~----~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 92 VV----QYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDLVK----LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HH----HHHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HH----HHHHhCCCCCcccCCCCCC-CHHHHHHHcCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 33 3333333 1111 1111 1233334455554333 333444333211 11123344455677766666
Q ss_pred HHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 173 VFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT--FVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 173 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
+++.-... |..-.+ -+...++.|+.+ +++.+.+.|..++... -.+.+......|+.+.+.++.+.+.
T Consensus 163 Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 163 LLAAKCDLHAVNIHGDS-PLHIAARENRYD----CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHTTTCCTTCCCTTCCC-HHHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCcCCCCCC-HHHHHHHhCCHh----HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 65543322 111112 222334455543 3333444454443211 1123344456667777777666554
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.88 E-value=2.9e+02 Score=29.39 Aligned_cols=127 Identities=10% Similarity=0.011 Sum_probs=71.9
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 036287 56 MINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELG 135 (488)
Q Consensus 56 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 135 (488)
++..+...|..+-|.++..-++. +...--.+..+|...|++++|...|++.- .|+.++...... .+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 55666777888877776665554 44443467778888899999998887753 233222111000 0000
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCH----HHHHHHHHHHHhcC
Q 036287 136 RWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK----ERDV----TTYNSLIAGLAMHG 196 (488)
Q Consensus 136 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g 196 (488)
..++... +. ......-|..++..+-+.+.++.+..+-+... ..|. ..|+.+..+.+..|
T Consensus 884 ~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0111100 00 01123467788899999998888766554433 3333 35777777776554
No 298
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=44.39 E-value=10 Score=22.18 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=10.3
Q ss_pred ccccccCCcchhh
Q 036287 443 KNLRVCNDCHSMI 455 (488)
Q Consensus 443 ~n~~~~~~~~~~~ 455 (488)
-++|+|.+|+.-+
T Consensus 15 ~~YRvC~~CgkPi 27 (44)
T 2lo3_A 15 IQYRVCEKCGKPL 27 (44)
T ss_dssp CCEEECTTTCCEE
T ss_pred ccchhhcccCCcc
Confidence 4799999998543
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.30 E-value=1.2e+02 Score=23.91 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhc--CCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCcc
Q 036287 302 QLGEQIAKRLLDC--RSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 302 ~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
+.+..+|..|... +..-+..|...+..+...|++.+|.++++.=.+.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3467777777663 35556677777778888888888888887766665544
No 300
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.28 E-value=1.1e+02 Score=25.36 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=32.0
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036287 86 AMIDGLV---RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG 130 (488)
Q Consensus 86 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 130 (488)
-+|+++. +-.+++.|+-.+-+|++.|-.|.-..-..++-+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4555554 45789999999999999987666655556666655544
No 301
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.79 E-value=1.6e+02 Score=24.53 Aligned_cols=66 Identities=6% Similarity=0.032 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCC
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDL 149 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 149 (488)
.|-..+..+ ..+...++..+|..|...|+--. ...|......+...|++.+|.+++..-++.+-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344444433 13335567777777766655433 3445555555666666666666666666665555
No 302
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.54 E-value=1.3e+02 Score=29.29 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=14.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.++.++..|.+.+.+++|..+..+..
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 34455555566666666666665553
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.26 E-value=1.5e+02 Score=23.76 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhc--CCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCcc
Q 036287 302 QLGEQIAKRLLDC--RSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 302 ~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
+.+..+|..|... +..-+..|...+..+...|++.+|.++|+.-.+.+-.|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3466778887764 45666778888888888999999999988877776554
No 304
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=39.14 E-value=11 Score=25.05 Aligned_cols=21 Identities=19% Similarity=0.456 Sum_probs=17.5
Q ss_pred ceEEEecCCcccccccCccCC
Q 036287 464 RKIIVRDRNRFHHFENGTCSC 484 (488)
Q Consensus 464 ~~i~~~d~~~~h~~~~g~csc 484 (488)
+.|=+.|.+..|+|+||+-+-
T Consensus 8 k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEE
T ss_pred eeEecCCCcEEEEEcCCceeh
Confidence 467788999999999998653
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.03 E-value=90 Score=24.24 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=24.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 107 MQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 107 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..+..--++.+...|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344544443322 223333333334445555555555443334333333444444444
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.93 E-value=1.2e+02 Score=25.10 Aligned_cols=82 Identities=2% Similarity=-0.067 Sum_probs=37.6
Q ss_pred cCChHHHHHHHHhCCCCCCHH---HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHH
Q 036287 266 VGRPEEAYDFITNMKIAPDHI---MLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIR 342 (488)
Q Consensus 266 ~g~~~~A~~~~~~m~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 342 (488)
.+...+..+++.+.+..++.. .-.+.+......|+.+.+..+++.-...+..+..-. +.+....+.|+.+-+..++
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHH
Confidence 344445555555553333211 112344455567787766666655333222221111 2233445667766665555
Q ss_pred HHHHhC
Q 036287 343 AKMKEA 348 (488)
Q Consensus 343 ~~m~~~ 348 (488)
+...+.
T Consensus 231 ~~~~~~ 236 (240)
T 3eu9_A 231 EARQAK 236 (240)
T ss_dssp HHC---
T ss_pred Hhhhcc
Confidence 544333
No 307
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.40 E-value=1.7e+02 Score=23.80 Aligned_cols=51 Identities=8% Similarity=0.169 Sum_probs=31.6
Q ss_pred HHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036287 60 YVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNV 112 (488)
Q Consensus 60 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 112 (488)
+.-.|.+..|+-++.....-...-|..| +|-+..++..|+..++.+....+
T Consensus 43 LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kv 93 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKV 93 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCS
T ss_pred hhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccc
Confidence 3456777777776665543333334433 46677788888888888775433
No 308
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.32 E-value=1.3e+02 Score=25.24 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=43.1
Q ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHcCCC
Q 036287 82 VCWTAMIDGLV---RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA-----LELGRWIHSYMGKHRID 148 (488)
Q Consensus 82 ~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~ 148 (488)
..+--+|+++. +-.+++.|+-.+-+|++.|-.|.-..-..++-+.-..|. +..|...++.....|.+
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33444566664 458899999999999999977766666666666655553 33444555555555543
No 309
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=36.25 E-value=1.6e+02 Score=27.16 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHH
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVKVKD---TVCWTAMIDGLVRNGE--MARALDLFREMQRDNVRPNEVTI 119 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~ 119 (488)
+.++.-|...|+.++|.+.++++..|. .....++..+.-+.++ .+...+++..+...|+-+.....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 566677777777777777777776553 2233344444433322 34456666666666654443333
No 310
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.18 E-value=1.9e+02 Score=23.91 Aligned_cols=27 Identities=15% Similarity=0.450 Sum_probs=15.3
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
+..|.+.|.+++|.+++++.....+.+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCc
Confidence 345777777777777777766655444
No 311
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=34.89 E-value=80 Score=22.27 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=23.7
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHH
Q 036287 64 GLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMAR 99 (488)
Q Consensus 64 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 99 (488)
...++|.++++.++.+...++..++.++.+.+...-
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 456667777777776677777777777766665433
No 312
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.69 E-value=2.2e+02 Score=24.45 Aligned_cols=60 Identities=12% Similarity=-0.063 Sum_probs=27.2
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 251 PQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
++..+-...+.++++.|.....-.+...+. .|+ +-...+.++...|+. .+...+..+.+.
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~~ 263 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGDK-TLLPVLDTMLYK 263 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCCG-GGHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCch-hhhHHHHHHHhc
Confidence 344444455555666654433333333332 123 223345555556653 445555555543
No 313
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.60 E-value=1.1e+02 Score=24.56 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=9.3
Q ss_pred HHhcCCHHHHHHHHHhc
Q 036287 161 YSRCGDIDKALQVFEEM 177 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~ 177 (488)
.+..|+.+-+..+++.-
T Consensus 113 A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHTTCHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 34556666555555543
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.52 E-value=77 Score=26.87 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhc--CCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCcc
Q 036287 302 QLGEQIAKRLLDC--RSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 302 ~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
+.+..+|..|... +..-+..|...+..+...|++.+|.++|+.=.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5667788888764 45666778888888889999999999988777766554
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.51 E-value=1.4e+02 Score=23.28 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=21.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG 231 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 231 (488)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444444455555555555444444445444444444443
No 316
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.13 E-value=1.7e+02 Score=24.91 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=43.9
Q ss_pred HHHHHhcCChHHHHHHHHhC-----CCCC----CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 260 VDLLSRVGRPEEAYDFITNM-----KIAP----DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m-----~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
++.+....++++|.+++++. +.++ +.......+..-.....-..+..+.+.+.. ...+......+..+.
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 44555556666666655544 1111 111122222222233333344444444422 334455666677778
Q ss_pred cCCChHHHHHHHHHHHhC
Q 036287 331 SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~ 348 (488)
+.|+-++|.++|=+.+..
T Consensus 103 rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHHH
Confidence 888888888887766543
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.71 E-value=1e+02 Score=23.90 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=31.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChH
Q 036287 208 MINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 208 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 4455655554322 2333443444455566666666543 33344445555566666666654
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.50 E-value=51 Score=23.64 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=20.9
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 036287 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 65 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 100 (488)
..+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 455666666666666666666666666554554433
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.02 E-value=1.4e+02 Score=23.36 Aligned_cols=36 Identities=8% Similarity=-0.017 Sum_probs=14.8
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 130 GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
+..-.|.++++.+.+.+...+..+..--++.+...|
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444445554444433333333333334444444
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.64 E-value=62 Score=26.99 Aligned_cols=51 Identities=6% Similarity=0.041 Sum_probs=28.9
Q ss_pred HHHhcCChHHHHHHHhhCCCCCce-eeHHHHHHHHHHcCCHHHHHHHHhhcC
Q 036287 27 LYGKCGEFKDAMQLFDEMPECNDV-VASTVMINCYVEHGLVENAFEVFSRVK 77 (488)
Q Consensus 27 ~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~ 77 (488)
..++.|+++....+++.-...+.. ..-.+.+...++.|+.+-+..+++.-.
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 345677777777777654332200 111234455566777777777776644
No 321
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.08 E-value=1.6e+02 Score=26.39 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCH
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVKVKD---TVCWTAMIDGLVRNGE--MARALDLFREMQRDNVRPNE 116 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 116 (488)
+.++.-|...|+.++|.+.++++..|. .....++..+.-+.++ .+....++..+.+.|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 456667777777777777777776552 2233333334433322 34455666666665554433
No 322
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.79 E-value=3.3e+02 Score=26.49 Aligned_cols=65 Identities=8% Similarity=0.052 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHH-HHHHHHHhcCchHHHHHHHHHHHHc
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNV-RPNE--VTIV-CVLSACSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 145 (488)
...+|.+++.|...+.++.|..+..+..--.. .+|. .+|. -+.....-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35688999999999999999999887641000 0111 2222 2334455566777777766666554
No 323
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.76 E-value=65 Score=22.78 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=22.4
Q ss_pred cCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHH
Q 036287 31 CGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAF 70 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~ 70 (488)
....+.|.++++.++.++ ..++..++.++.+.+...-|.
T Consensus 49 ~t~~~kar~Lld~l~~kG-~~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKD-NDSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp SSHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHcC-HHHHHHHHHHHHHcCHHHHHH
Confidence 345556666666666665 566666666666555444333
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.53 E-value=96 Score=28.16 Aligned_cols=80 Identities=9% Similarity=-0.031 Sum_probs=34.1
Q ss_pred HHhcCChHHHHHHHHhCC------CC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCCh
Q 036287 263 LSRVGRPEEAYDFITNMK------IA-PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW 335 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m~------~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 335 (488)
-+..|+.+-+..+++.-. +. .|..-++.|. ..+..|+.+.+..+++.-.+.+..+..-...| ...+..|..
T Consensus 180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~ 257 (364)
T 3ljn_A 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMV 257 (364)
T ss_dssp HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCH
T ss_pred HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChH
Confidence 345666666666665421 11 1112222222 23355666555444443222222222222222 233455666
Q ss_pred HHHHHHHHH
Q 036287 336 KEAVQIRAK 344 (488)
Q Consensus 336 ~~a~~~~~~ 344 (488)
+-+..+++.
T Consensus 258 ~~v~~Ll~~ 266 (364)
T 3ljn_A 258 LLTKELLQK 266 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666555554
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.69 E-value=1.7e+02 Score=26.48 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCH-HHHHHHHHHHHHcCCHH
Q 036287 22 LKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKVKDT-VCWTAMIDGLVRNGEMA 98 (488)
Q Consensus 22 ~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~ 98 (488)
.+.+...+..|+.+-...+++.-...+ +..-++. +...+..|+.+-+.-+++.-...+. .-++ .+...+..|+.+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~~~ 98 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA-LHLACKFGCVDTAKYLASVGEVHSLWHGQK-PIHLAVMANKTD 98 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHCCHHHHHHHHHHCCCCCCBTTBC-HHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCccccCCCC-HHHHHHHcCCHH
Confidence 344555556777777777776533322 1122222 3333445666666655555432222 1111 222233445555
Q ss_pred HHHHHHHH
Q 036287 99 RALDLFRE 106 (488)
Q Consensus 99 ~A~~~~~~ 106 (488)
-+..+++.
T Consensus 99 ~v~~Ll~~ 106 (364)
T 3ljn_A 99 LVVALVEG 106 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444444
No 326
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.75 E-value=1.6e+02 Score=26.81 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC
Q 036287 55 VMINCYVEHGLVENAFEVFSRVKVK 79 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~~~ 79 (488)
.++.-|...|+.++|.+.++++..|
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 3444444445555555555554433
No 327
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.74 E-value=1.3e+02 Score=25.24 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=12.7
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 036287 260 VDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m 279 (488)
+-.|.+.|.+++|.+++++.
T Consensus 121 V~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHH
Confidence 34556667777777766665
No 328
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.73 E-value=1.2e+02 Score=24.10 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=36.4
Q ss_pred hHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-CcccChhhHHHHHHHHHhcCChH
Q 036287 199 IEAVEMFRE-MINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-GIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 199 ~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
+.+++-+.+ +.+.|.+++..= ..++..+...+..-.|.++++.+.+.. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 334443333 334566655432 334555555556666777777665420 22334444444566677777654
No 329
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.22 E-value=2.8e+02 Score=23.71 Aligned_cols=225 Identities=10% Similarity=-0.005 Sum_probs=109.5
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEM----ARALDLFREMQRDNVRPNEVTIVCVLSA 125 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 125 (488)
...-...+.++.+.|..+....+.+.+..++...-...+.++.+.|.. ...+.++..+... .++...-...+.+
T Consensus 37 ~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a~~a 114 (280)
T 1oyz_A 37 SLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAIES 114 (280)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 333344455555556544444444444555655555555666665532 2233344322111 2455555556666
Q ss_pred HHhcCc-----hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcC-Chh
Q 036287 126 CSQLGA-----LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHG-RSI 199 (488)
Q Consensus 126 ~~~~~~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 199 (488)
....+. ...+...+..+.+ .++..+-...+.+..+.|+.+....+...+..++...-...+.++...| ...
T Consensus 115 L~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~ 191 (280)
T 1oyz_A 115 TAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 191 (280)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH
Confidence 655541 2233333333332 4566666666667777766433333444445566655555555555554 234
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 200 EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 200 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
++...+..+.. .+|...-...+.++...|..+....+...+. + |+ +....+.++++.|.. ++...+.++
T Consensus 192 ~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d----~~--vr~~a~~aL~~i~~~-~~~~~L~~~ 260 (280)
T 1oyz_A 192 DIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-K----NT--VYDDIIEAAGELGDK-TLLPVLDTM 260 (280)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-S----SS--CCHHHHHHHHHHCCG-GGHHHHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-C----cc--HHHHHHHHHHhcCch-hhhHHHHHH
Confidence 55555555543 3555555566666666665443333333332 1 33 223456667777764 444444443
Q ss_pred -CCCCCHHHHHH
Q 036287 280 -KIAPDHIMLGS 290 (488)
Q Consensus 280 -~~~p~~~~~~~ 290 (488)
.-.++......
T Consensus 261 l~~~~~~~~~~~ 272 (280)
T 1oyz_A 261 LYKFDDNEIITS 272 (280)
T ss_dssp HTTSSCCHHHHH
T ss_pred HhcCCCcHHHHH
Confidence 33334333333
No 330
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.06 E-value=93 Score=23.33 Aligned_cols=43 Identities=9% Similarity=-0.059 Sum_probs=29.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc
Q 036287 103 LFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 103 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 145 (488)
+|+.+....+.|+...-..-+..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666666666655554445555667788999999998887653
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.39 E-value=75 Score=22.74 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHH
Q 036287 165 GDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEA 201 (488)
Q Consensus 165 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (488)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4677888888888888778888888887666665444
No 332
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.25 E-value=1.2e+02 Score=26.57 Aligned_cols=202 Identities=10% Similarity=-0.027 Sum_probs=107.7
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---C
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVK---D 80 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~ 80 (488)
++...+.+.++........+.+...++.|+.+-+..+++.-...+...- .+.+...+..|+.+-+..+++.-..+ |
T Consensus 14 ~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d 92 (285)
T 3kea_A 14 QLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN-EFPLHQAATLEDTKIVKILLFSGLDDSQFD 92 (285)
T ss_dssp HHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTT-CCHHHHHTTSSSCHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 3444454444432222334456666778999988888876433321111 23444556778888888887764432 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCC-cHhHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV---TIVCVLSACSQLGALELGRWIHSYMGKHRIDL-NHIVGGA 156 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ 156 (488)
..-++.|. ..+..|+.+-+.-+++ .|..++.. -+.+.+...+..|+.+-++ .+.+.|..+ +.....+
T Consensus 93 ~~g~t~L~-~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t 163 (285)
T 3kea_A 93 DKGNTALY-YAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLS 163 (285)
T ss_dssp TTSCCHHH-HHHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHH
T ss_pred CCCCcHHH-HHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCcc
Confidence 22233333 3356676655444443 34443322 1134455556677765444 444555333 2213445
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT 219 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 219 (488)
.+...+..|+.+-+.-+++.-..+ |..-++..+...+..|+. ++.+.+.+.|..|+...
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 566667889998888877664332 222222223333445553 45556667787777654
No 333
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.61 E-value=1.1e+02 Score=24.27 Aligned_cols=58 Identities=3% Similarity=-0.036 Sum_probs=29.8
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCC
Q 036287 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH--RIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 108 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~ 166 (488)
.+.|++++.. -..++......+..-.|.++++.+.+. +...+..|..--++.+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3456655443 233444555555555666666666655 444444443334455555553
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.82 E-value=2.3e+02 Score=25.68 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPEC 47 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~ 47 (488)
...++.-|...|+.++|.+.++++..+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 467888899999999999999999764
No 335
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=23.94 E-value=16 Score=18.32 Aligned_cols=13 Identities=54% Similarity=1.551 Sum_probs=8.3
Q ss_pred ccccCcc--CCCCCC
Q 036287 476 HFENGTC--SCGDYW 488 (488)
Q Consensus 476 ~~~~g~c--sc~~~w 488 (488)
.|.+|-| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5677777 466655
No 336
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.67 E-value=1.3e+02 Score=22.76 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=31.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL 232 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 232 (488)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555566667788888888777666677777777777766664
No 337
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.58 E-value=3e+02 Score=22.44 Aligned_cols=54 Identities=7% Similarity=-0.008 Sum_probs=23.3
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCcc
Q 036287 294 ACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 294 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
.....|+.+....+++.-...+..+..-... +...+..|..+ +.+.+.+.|..+
T Consensus 145 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~ 198 (231)
T 3aji_A 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTP-LHLACDEERVE----EAKFLVTQGASI 198 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCS
T ss_pred HHHHcCCHHHHHHHHhcCCCccccCCCCCCH-HHHHHHCCCHH----HHHHHHHCCCCC
Confidence 3345667665555554322222222221122 22334555544 344455566543
No 338
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.56 E-value=3.9e+02 Score=23.79 Aligned_cols=25 Identities=8% Similarity=0.313 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC
Q 036287 22 LKLVELYGKCGEFKDAMQLFDEMPE 46 (488)
Q Consensus 22 ~~li~~y~~~g~~~~A~~~~~~m~~ 46 (488)
..++.-|...|+.++|...++++..
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 4455555556666666666665544
No 339
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=23.40 E-value=30 Score=26.55 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=26.5
Q ss_pred CCcEEEE----ccccccCCcchhhHHHhhhcCceEEEecCCcccccccCccC
Q 036287 436 YTTIRVV----KNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCS 483 (488)
Q Consensus 436 ~~~~~~~----~n~~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~cs 483 (488)
...+||+ +..++|-+| .+...-..-.++-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4556765 346666665 333444445688999999999874
No 340
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.35 E-value=2e+02 Score=22.91 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=25.6
Q ss_pred HHHhCChhHHHHHHHHH-HhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCcc
Q 036287 295 CKIHGKLQLGEQIAKRL-LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 295 ~~~~g~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
.+..|+.+....+++.- ...+..+..-...|..+.........-.++.+.+.+.|..+
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ 171 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC
Confidence 34456665555554443 22222222222333333322222333456666666776654
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.18 E-value=1.5e+02 Score=22.91 Aligned_cols=32 Identities=13% Similarity=-0.016 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 134 LGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 134 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
.|.++++.+.+.+...+..+..--++.+...|
T Consensus 35 ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 44444544444443333333333333344444
No 342
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.83 E-value=3.1e+02 Score=22.26 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=29.6
Q ss_pred hcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036287 163 RCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR 214 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 214 (488)
-.|.+..++-++.....-...-|.. -+|-+..++..|+..++.+.+..+.
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred hcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3577777766665543222222332 2566778888888888888754443
No 343
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=22.76 E-value=2.8e+02 Score=21.71 Aligned_cols=41 Identities=5% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHH
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~ 61 (488)
++.++......|-+++...-+..|...+++.....++..|.
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl 50 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFF 50 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 34556666677878876666777766555666677776663
No 344
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.09 E-value=1.9e+02 Score=21.99 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=21.2
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036287 188 LIAGLAMHG-RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG 231 (488)
Q Consensus 188 li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 231 (488)
++..+...+ ..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 333333333 44455555555555544445555555555444444
No 345
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.01 E-value=4.3e+02 Score=23.62 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHC-C----CCCCHHHHHHH---HHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 95 GEMARALDLFREMQRD-N----VRPNEVTIVCV---LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~-g----~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
-+.++|..+|..+... + ..|+....... +..+.+.-+ -+++..+.+.|+.|...+..-++..++..=.
T Consensus 163 ~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 163 MSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp SCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 3566788888777643 1 23443322222 222222222 3567777888888888888888888888778
Q ss_pred HHHHHHHHHhccc--CCHHHHHH--HHHH----HHhcCChhHHHHHHHH
Q 036287 167 IDKALQVFEEMKE--RDVTTYNS--LIAG----LAMHGRSIEAVEMFRE 207 (488)
Q Consensus 167 ~~~A~~~~~~~~~--~~~~~~~~--li~~----~~~~g~~~~A~~l~~~ 207 (488)
++.+..+++.... .....+-+ ++.. ..+..+.++.+..++.
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 8899988887653 22222211 1111 1223466666666665
No 346
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.94 E-value=1.7e+02 Score=24.30 Aligned_cols=187 Identities=6% Similarity=-0.076 Sum_probs=0.0
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhH--HHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHH--HHHHHHHhcC
Q 036287 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIV--GGALINMYSRCGDIDKALQVFEEMKERDVTTYN--SLIAGLAMHG 196 (488)
Q Consensus 121 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~g 196 (488)
+.+...+..|+.+.++.+++.+.+.|..++..- ..+.+...+..|+.+-+..+++.-..++..... +.+...+..|
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFV--GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYD 274 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 274 (488)
+.+-+..+++.....++.++..... ..+...+..|..+-...+++.-.. -...+.......+...++.|+.+-+.-
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~ 168 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD--IDAVDIKSGRSPLIHAVENNSLSMVQL 168 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC--cccccccCCCcHHHHHHHcCCHHHHHH
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 275 FITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 275 ~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
+++.- .+......-.+.+......|+.+....+++
T Consensus 169 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 347
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.67 E-value=2.5e+02 Score=25.19 Aligned_cols=42 Identities=5% Similarity=0.059 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMP 45 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 45 (488)
+++.++.+.|+.|..++..=++..|++.=.++.+.++++.+.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l 250 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIF 250 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 355556666666666666666666655555566666655443
No 348
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.27 E-value=2.3e+02 Score=21.50 Aligned_cols=34 Identities=6% Similarity=-0.030 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 132 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
.-.|.++++.+.+.+...+..+..--++.+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344445554444443333333333333444433
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.00 E-value=1.4e+02 Score=22.51 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG 130 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 130 (488)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 455555566667777777777777765666666666666665555
No 350
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.76 E-value=1.6e+02 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChH
Q 036287 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
.-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 33 h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 33 HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcEE
Confidence 34555555555433 32334444444455555555543
No 351
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.32 E-value=3.2e+02 Score=21.47 Aligned_cols=51 Identities=6% Similarity=0.004 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc
Q 036287 100 ALDLFREMQRDNVRPN-EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN 150 (488)
Q Consensus 100 A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 150 (488)
+..+|..|...|+--. ...|......+...|++.+|.+++..-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 6667777766665443 34455555566666777777777777666665553
No 352
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.29 E-value=2.1e+02 Score=28.06 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHH
Q 036287 185 YNSLIAGLA--MHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262 (488)
Q Consensus 185 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 262 (488)
|..-|..+. ...+.........++...=.--+......++..|.+.|..+.|.+++..+-. ..--+...| .-+..
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~--k~l~~g~~g-eAL~~ 558 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGN--QMLSAHNII-ESIAN 558 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HHHHCccHH-HHHHH
Q ss_pred HHhcCChHHHHH
Q 036287 263 LSRVGRPEEAYD 274 (488)
Q Consensus 263 ~~~~g~~~~A~~ 274 (488)
|+|+|+++....
T Consensus 559 f~rA~~~~~Vk~ 570 (570)
T 3f3f_C 559 FSRAGKYELVKS 570 (570)
T ss_dssp ------------
T ss_pred HHHcCChhhccC
No 353
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.22 E-value=2.3e+02 Score=26.14 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCC----HHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHH
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKERD----VTTYNSLIAGLAMHGRSIEAV-EMFREMINQGIRPTKVTFVGVLNAC 227 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~ 227 (488)
...+++.=|...|++++|...++++..|+ .+....+..++-+.....++. .++..+...|+-+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_pred hccCCHH
Q 036287 228 SHGGLVD 234 (488)
Q Consensus 228 ~~~g~~~ 234 (488)
....+..
T Consensus 94 e~l~Dl~ 100 (364)
T 3l6a_A 94 DQCPKLE 100 (364)
T ss_dssp HTHHHHH
T ss_pred hhChHhc
Done!