BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036289
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 28 LQTVDLKVRMDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVTGYVEANKVLKKAKSTG 87
L T++ V+M C C V+ ++ ++GV+ VE++ + Q V V + + +V + TG
Sbjct: 18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTG 77
Query: 88 KRA 90
++A
Sbjct: 78 RQA 80
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 37 MDCDGCELKVKNAVSSLSGVKSVEI 61
MDC C KV+NAV L+GV V++
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQV 36
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 29 QTVDLKVR-MDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVTGYVE 75
QT++L++ MDC C ++ A++ + GV+S ++N ++ V+ + E
Sbjct: 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE 49
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 29 QTVDLKV-RMDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVT 71
QTV L V M C C + VK A+S + GV V++ + ++ VT
Sbjct: 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVT 46
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 35 VRMDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVTGYVEANKVLKKAKSTGKRAEI 92
+ M C+ C +K + ++ G+ S+ + +QQ +SV V + ++ ++ GK A I
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAII 70
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 31 VDLKVR-MDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVTGYVEANKVLKKAKSTGKR 89
+ LKV M C+ C + V A+ + GV+ VE++ ++ + V G + +++ + G +
Sbjct: 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYK 61
Query: 90 AEIW 93
AE+
Sbjct: 62 AEVL 65
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 28 LQTVDLKVR-MDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVT 71
L+T ++V MDC C+LK++ ++ L GV + +++VT
Sbjct: 7 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 51
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 28 LQTVDLKVR-MDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVT 71
L+T ++V MDC C+LK++ ++ L GV + +++VT
Sbjct: 2 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 46
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 29 QTVDLKVR-MDCDGCELKVKNAVSSLSGVKSVEIN 62
QT++L++ M C C ++ A++ + GV+S ++N
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVN 37
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 29 QTVDLKVR-MDCDGCELKVKNAVSSLSGVKSVEIN 62
QT++L++ M C C ++ A++ + GV+S ++N
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVN 37
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 32 DLKVRMDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVTGYVEANKVLKKAKSTGK 88
+ V M C GC V ++ L GVK +I+ +KV + + +L K TGK
Sbjct: 5 EFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGK 60
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 39 CDGCELKVKNAVSSLSGVKSVEINRKQQKVSVTGYVEANKVLKKAKSTGKRAEI 92
C+ C +K + ++ G+ S+ + +QQ SV V + ++ ++ GK A I
Sbjct: 16 CENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGKDAII 69
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 32 DLKVRMDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVTGYVEANKVLKKAKSTGK 88
+ V M C GC V ++ L GVK +I+ +KV + + +L K TGK
Sbjct: 4 EFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGK 59
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 109 AYDKRAPPGYVRKVEGTATNASVTTLED 136
A D+RAPPG+ V G +TT+ +
Sbjct: 166 AVDERAPPGFAGLVIGLTVGGIITTIGN 193
>pdb|1V86|A Chain A, Solution Structure Of The Ubiquitin Domain From Mouse
D7wsu128e Protein
Length = 95
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 32 DLKVRMDCDGCELKVKNAVSSLSGVKSVEINRKQQKVSVTGYVEANKVLKKAKST 86
D+KV +D G ELK K + S++G+ QKV G V +K L++ K T
Sbjct: 30 DVKVPLDSTGSELKQK--IHSITGLPPA-----MQKVMYKGLVPEDKTLREIKVT 77
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 29 QTVDLKVRMD---CDGCELKVKNAVSSLSGVKSVEINRKQQKVSV 70
V L++R+D C C L ++ + L GV+S++++ + + V
Sbjct: 18 HVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQV 62
>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|B Chain B, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|C Chain C, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
Length = 255
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 86 TGKRAEIWPYVPYNLVAQPYIAGAYDKRAPPGYVRKVEGTATNASVTT 133
T K + +P+N VA+PYI GY+ G VTT
Sbjct: 102 TNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTT 149
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 50 VSSLSGVKSVEINRKQQKVSVTGYVEANKVLKKAKSTGKRAEIWPYVPYNLVAQPYIAGA 109
+S +SG RK S T + ANKV + + AE P+V +PY
Sbjct: 1 ISGMSG-------RKASGSSPTSPINANKVENEDAFLEEVAEEKPHV------KPYFTKT 47
Query: 110 YDKRAPPGYVRKVEGTAT--NASVTTLEDPYISMFSDDNP 147
+ VEG+A + V DP + F DDNP
Sbjct: 48 ILD------MEVVEGSAARFDCKVEGYPDPEVMWFKDDNP 81
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 37 MDCDGCELKVKNAVSSLSGVKSVEIN 62
M CD C VK A+ + GV+S ++
Sbjct: 9 MTCDSCAAHVKEALEKVPGVQSALVS 34
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 50 VSSLSGVKSVEINRKQQKVSVTGYVEANKVLKKAKSTGKRAEIWPYVPYNLVAQPYIAGA 109
+S +SG RK S T + ANKV + + AE P+V +PY
Sbjct: 1 ISGMSG-------RKASGSSPTSPINANKVENEDAFLEEVAEEKPHV------KPYFTKT 47
Query: 110 YDKRAPPGYVRKVEGTAT--NASVTTLEDPYISMFSDDNP 147
+ VEG+A + V DP + F DDNP
Sbjct: 48 ILD------MDVVEGSAARFDCKVEGYPDPEVMWFKDDNP 81
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 25.8 bits (55), Expect = 10.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 37 MDCDGCELKVKNAVSSLSGVKSVEIN 62
M C C ++ AV SL GV+ V +N
Sbjct: 11 MTCAMCVKSIETAVGSLEGVEEVRVN 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,762,442
Number of Sequences: 62578
Number of extensions: 123214
Number of successful extensions: 228
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 29
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)