Query 036290
Match_columns 796
No_of_seqs 688 out of 4206
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 11:13:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-100 1E-104 879.8 75.7 683 107-792 48-744 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 9.9E-92 2.1E-96 810.8 75.3 647 38-689 80-728 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.8E-69 3.9E-74 610.3 54.0 481 310-791 85-580 (697)
4 PLN03218 maturation of RBCL 1; 100.0 2.8E-68 6.2E-73 600.2 59.1 531 76-652 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 8.9E-67 1.9E-71 588.1 59.9 536 142-720 367-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.4E-67 7.4E-72 591.9 53.4 475 107-583 84-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-36 3.2E-41 361.6 73.0 702 45-761 126-879 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-36 6.9E-41 358.7 75.6 687 45-747 160-899 (899)
9 PRK11447 cellulose synthase su 100.0 6E-24 1.3E-28 252.3 67.1 650 45-747 29-739 (1157)
10 PRK11447 cellulose synthase su 100.0 2.2E-22 4.8E-27 239.0 62.8 605 115-754 33-706 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 3.4E-21 7.4E-26 217.6 60.9 263 482-753 476-745 (987)
12 PRK09782 bacteriophage N4 rece 99.9 6.8E-21 1.5E-25 215.2 62.4 667 45-761 7-719 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.2E-18 4.7E-23 172.0 34.1 370 381-761 115-498 (966)
14 KOG2002 TPR-containing nuclear 99.8 8.4E-16 1.8E-20 162.3 50.5 551 196-760 146-757 (1018)
15 KOG4626 O-linked N-acetylgluco 99.8 3.2E-17 6.9E-22 163.8 32.6 433 285-730 52-501 (966)
16 KOG4422 Uncharacterized conser 99.8 1.2E-15 2.5E-20 146.2 41.5 444 211-713 116-587 (625)
17 KOG2002 TPR-containing nuclear 99.8 3.6E-15 7.8E-20 157.6 49.0 545 127-718 147-748 (1018)
18 KOG4422 Uncharacterized conser 99.8 9.8E-16 2.1E-20 146.7 40.3 330 110-483 116-468 (625)
19 PRK11788 tetratricopeptide rep 99.8 2.1E-17 4.7E-22 175.3 30.8 291 422-747 44-346 (389)
20 KOG4318 Bicoid mRNA stability 99.8 1.4E-15 3E-20 158.5 42.7 661 38-753 19-776 (1088)
21 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.9E-21 177.1 37.5 331 415-754 44-387 (656)
22 PRK10049 pgaA outer membrane p 99.8 1.8E-15 3.9E-20 172.0 45.2 396 354-757 22-465 (765)
23 KOG4318 Bicoid mRNA stability 99.8 2.1E-16 4.6E-21 164.5 33.4 616 130-792 10-701 (1088)
24 PRK11788 tetratricopeptide rep 99.8 4.9E-17 1.1E-21 172.6 29.4 298 358-688 46-354 (389)
25 TIGR00990 3a0801s09 mitochondr 99.8 8.5E-15 1.8E-19 163.7 43.3 420 314-754 129-577 (615)
26 PRK14574 hmsH outer membrane p 99.8 3E-14 6.5E-19 158.4 45.2 424 291-756 44-521 (822)
27 TIGR00990 3a0801s09 mitochondr 99.7 1.8E-14 3.8E-19 161.2 41.0 417 283-713 129-568 (615)
28 PRK15174 Vi polysaccharide exp 99.7 5E-15 1.1E-19 164.7 35.9 320 350-713 45-378 (656)
29 PRK10049 pgaA outer membrane p 99.7 1.1E-13 2.3E-18 157.7 46.9 416 251-726 20-467 (765)
30 PRK14574 hmsH outer membrane p 99.7 1.3E-12 2.8E-17 145.5 47.6 98 619-721 419-519 (822)
31 KOG2076 RNA polymerase III tra 99.7 1.9E-11 4E-16 129.2 51.9 674 44-745 139-892 (895)
32 KOG0495 HAT repeat protein [RN 99.7 1.5E-10 3.3E-15 117.6 53.9 487 258-761 388-893 (913)
33 KOG2076 RNA polymerase III tra 99.6 4.7E-11 1E-15 126.3 47.3 590 124-754 153-855 (895)
34 KOG0495 HAT repeat protein [RN 99.6 2.4E-10 5.3E-15 116.2 49.6 573 158-761 264-859 (913)
35 KOG2003 TPR repeat-containing 99.5 2.8E-11 6E-16 117.3 30.4 457 218-702 208-709 (840)
36 KOG1915 Cell cycle control pro 99.5 6.4E-10 1.4E-14 108.9 39.6 445 294-747 86-584 (677)
37 KOG2003 TPR repeat-containing 99.5 5E-11 1.1E-15 115.6 27.6 435 318-760 207-701 (840)
38 PRK10747 putative protoheme IX 99.5 1.6E-10 3.5E-15 121.2 32.0 281 426-749 97-391 (398)
39 PRK10747 putative protoheme IX 99.4 8.9E-11 1.9E-15 123.1 29.0 277 395-713 97-387 (398)
40 TIGR00540 hemY_coli hemY prote 99.4 2.6E-10 5.7E-15 120.4 32.4 283 425-747 96-398 (409)
41 KOG1126 DNA-binding cell divis 99.4 1.8E-11 3.9E-16 125.4 21.7 280 463-754 334-626 (638)
42 PF13429 TPR_15: Tetratricopep 99.4 2.5E-12 5.4E-17 128.8 12.5 253 488-748 13-277 (280)
43 TIGR00540 hemY_coli hemY prote 99.4 3.1E-10 6.8E-15 119.8 28.7 284 393-713 95-396 (409)
44 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.6E-14 105.5 29.6 286 426-747 97-389 (400)
45 KOG1155 Anaphase-promoting com 99.4 3.1E-09 6.6E-14 104.2 32.6 369 377-759 159-547 (559)
46 KOG1915 Cell cycle control pro 99.4 1.1E-07 2.5E-12 93.5 43.1 448 193-678 86-583 (677)
47 KOG4162 Predicted calmodulin-b 99.4 2.2E-08 4.8E-13 104.7 38.4 376 374-754 315-789 (799)
48 KOG2047 mRNA splicing factor [ 99.3 7.3E-07 1.6E-11 91.4 47.8 175 179-359 101-293 (835)
49 KOG0985 Vesicle coat protein c 99.3 2.5E-06 5.3E-11 91.8 53.9 646 51-731 475-1325(1666)
50 KOG1174 Anaphase-promoting com 99.3 1.3E-08 2.9E-13 98.2 33.6 310 445-760 191-512 (564)
51 PF13429 TPR_15: Tetratricopep 99.3 9.6E-12 2.1E-16 124.6 12.4 160 550-713 111-274 (280)
52 KOG3785 Uncharacterized conser 99.3 5.4E-09 1.2E-13 98.7 29.3 149 599-751 338-493 (557)
53 COG2956 Predicted N-acetylgluc 99.3 1.5E-09 3.2E-14 101.4 24.6 287 425-747 47-346 (389)
54 KOG2047 mRNA splicing factor [ 99.3 1.1E-06 2.3E-11 90.2 45.6 320 360-703 360-710 (835)
55 KOG1155 Anaphase-promoting com 99.3 1.2E-07 2.5E-12 93.4 37.5 367 358-749 175-554 (559)
56 KOG1173 Anaphase-promoting com 99.3 4.8E-09 1.1E-13 105.6 28.6 278 480-761 241-531 (611)
57 PF13041 PPR_2: PPR repeat fam 99.3 7.6E-12 1.6E-16 86.9 5.3 50 108-157 1-50 (50)
58 KOG0547 Translocase of outer m 99.2 6.9E-08 1.5E-12 95.5 32.9 401 316-748 119-566 (606)
59 KOG1126 DNA-binding cell divis 99.2 1.1E-09 2.5E-14 112.4 21.6 194 513-717 420-622 (638)
60 KOG1173 Anaphase-promoting com 99.2 6E-08 1.3E-12 97.9 31.8 267 419-695 250-530 (611)
61 KOG3616 Selective LIM binding 99.2 2.8E-06 6.2E-11 88.2 44.2 276 93-410 746-1023(1636)
62 PF13041 PPR_2: PPR repeat fam 99.2 2.7E-11 5.8E-16 84.1 5.7 50 209-258 1-50 (50)
63 COG3071 HemY Uncharacterized e 99.2 3.5E-08 7.7E-13 95.5 28.5 291 325-686 97-395 (400)
64 KOG0985 Vesicle coat protein c 99.2 1.6E-05 3.5E-10 85.8 54.9 643 80-743 361-1218(1666)
65 KOG2376 Signal recognition par 99.2 1.1E-07 2.3E-12 96.6 31.4 350 394-761 91-500 (652)
66 COG2956 Predicted N-acetylgluc 99.2 6E-08 1.3E-12 91.0 27.2 281 395-713 48-344 (389)
67 KOG0547 Translocase of outer m 99.2 3E-08 6.6E-13 98.0 26.4 212 494-713 337-563 (606)
68 TIGR02521 type_IV_pilW type IV 99.1 1.3E-08 2.8E-13 99.5 23.3 163 585-750 66-234 (234)
69 KOG1129 TPR repeat-containing 99.1 9.2E-09 2E-13 96.1 17.3 236 519-759 228-469 (478)
70 KOG3616 Selective LIM binding 99.1 1E-05 2.2E-10 84.2 40.2 461 92-640 457-932 (1636)
71 TIGR02521 type_IV_pilW type IV 99.0 7.8E-08 1.7E-12 93.9 23.6 194 514-713 31-229 (234)
72 KOG1840 Kinesin light chain [C 99.0 2.3E-07 5.1E-12 96.8 27.8 201 519-747 246-478 (508)
73 KOG3617 WD40 and TPR repeat-co 99.0 2.2E-05 4.7E-10 83.0 40.9 469 77-607 724-1242(1416)
74 COG3063 PilF Tfp pilus assembl 99.0 8.4E-08 1.8E-12 85.9 20.1 195 557-755 43-243 (250)
75 KOG1127 TPR repeat-containing 99.0 1.5E-05 3.2E-10 86.2 39.1 355 400-765 801-1192(1238)
76 KOG2376 Signal recognition par 99.0 3.9E-05 8.4E-10 78.6 38.9 366 293-676 91-516 (652)
77 KOG1156 N-terminal acetyltrans 99.0 1.5E-05 3.2E-10 82.4 36.3 388 322-749 51-469 (700)
78 KOG3785 Uncharacterized conser 98.9 5.4E-06 1.2E-10 78.9 30.5 95 589-690 398-497 (557)
79 KOG1156 N-terminal acetyltrans 98.9 7.1E-06 1.5E-10 84.7 33.1 459 158-678 20-509 (700)
80 PF12569 NARP1: NMDA receptor- 98.9 1.8E-06 3.8E-11 91.6 30.2 284 389-713 11-331 (517)
81 PRK12370 invasion protein regu 98.9 1.4E-07 3.1E-12 103.6 23.1 178 563-747 318-501 (553)
82 KOG3617 WD40 and TPR repeat-co 98.9 8.3E-05 1.8E-09 78.8 39.8 266 102-408 718-993 (1416)
83 PRK11189 lipoprotein NlpI; Pro 98.9 6.2E-07 1.3E-11 90.0 24.1 218 529-754 41-271 (296)
84 PRK12370 invasion protein regu 98.9 4E-07 8.6E-12 100.2 24.6 119 558-678 347-468 (553)
85 KOG1129 TPR repeat-containing 98.9 8.9E-08 1.9E-12 89.7 15.6 227 486-718 226-461 (478)
86 KOG1174 Anaphase-promoting com 98.9 1.7E-05 3.6E-10 77.4 31.2 286 426-719 209-504 (564)
87 KOG1840 Kinesin light chain [C 98.9 2.3E-06 4.9E-11 89.6 27.4 202 418-678 246-477 (508)
88 COG3063 PilF Tfp pilus assembl 98.9 1.1E-06 2.3E-11 79.1 21.1 201 516-722 37-243 (250)
89 KOG4162 Predicted calmodulin-b 98.8 5.8E-05 1.2E-09 79.9 34.8 423 276-713 318-780 (799)
90 KOG0624 dsRNA-activated protei 98.7 3.9E-05 8.5E-10 73.0 28.7 317 388-764 44-386 (504)
91 PF04733 Coatomer_E: Coatomer 98.7 3.7E-07 8.1E-12 90.0 16.1 224 519-754 40-271 (290)
92 KOG1127 TPR repeat-containing 98.7 0.00018 3.9E-09 78.2 35.5 550 196-761 474-1080(1238)
93 PF12569 NARP1: NMDA receptor- 98.7 2.1E-05 4.7E-10 83.5 28.8 289 421-748 12-334 (517)
94 PRK11189 lipoprotein NlpI; Pro 98.6 2.5E-05 5.5E-10 78.4 25.1 145 428-575 41-191 (296)
95 PRK15359 type III secretion sy 98.6 3.5E-07 7.7E-12 80.3 10.3 121 636-763 13-136 (144)
96 PF12854 PPR_1: PPR repeat 98.6 4.6E-08 1E-12 60.6 3.3 34 73-106 1-34 (34)
97 KOG4340 Uncharacterized conser 98.6 6.4E-05 1.4E-09 70.1 24.4 188 184-379 14-210 (459)
98 KOG1914 mRNA cleavage and poly 98.6 0.0015 3.3E-08 66.6 36.2 183 530-713 347-536 (656)
99 KOG0548 Molecular co-chaperone 98.5 0.00011 2.3E-09 74.8 26.8 228 517-759 227-466 (539)
100 KOG4340 Uncharacterized conser 98.5 0.00026 5.7E-09 66.2 26.3 177 495-676 124-335 (459)
101 PRK04841 transcriptional regul 98.5 0.00031 6.7E-09 83.7 34.2 365 388-754 347-766 (903)
102 cd05804 StaR_like StaR_like; a 98.4 0.00066 1.4E-08 71.0 31.8 20 729-748 317-336 (355)
103 PF12854 PPR_1: PPR repeat 98.4 4.4E-07 9.5E-12 56.2 4.3 33 377-409 2-34 (34)
104 PRK10370 formate-dependent nit 98.4 1.7E-05 3.7E-10 73.8 16.9 155 591-759 23-184 (198)
105 PF04733 Coatomer_E: Coatomer 98.4 4.1E-05 8.9E-10 75.7 20.4 148 491-644 110-264 (290)
106 cd05804 StaR_like StaR_like; a 98.4 0.00044 9.5E-09 72.3 29.7 298 413-713 6-333 (355)
107 TIGR03302 OM_YfiO outer membra 98.3 2.6E-05 5.5E-10 76.0 17.0 60 692-751 171-235 (235)
108 KOG1128 Uncharacterized conser 98.3 3.8E-05 8.2E-10 80.7 18.0 218 478-713 393-613 (777)
109 KOG3081 Vesicle coat complex C 98.3 0.00058 1.3E-08 63.2 22.9 174 572-753 96-276 (299)
110 PRK04841 transcriptional regul 98.3 0.025 5.3E-07 67.6 48.4 365 288-680 348-760 (903)
111 KOG1125 TPR repeat-containing 98.3 0.00015 3.2E-09 74.5 20.8 122 614-740 428-563 (579)
112 KOG1128 Uncharacterized conser 98.2 2.5E-05 5.5E-10 82.0 15.1 212 518-749 402-617 (777)
113 KOG0624 dsRNA-activated protei 98.2 0.0025 5.4E-08 61.1 26.7 201 456-686 163-373 (504)
114 PLN02789 farnesyltranstransfer 98.2 0.00066 1.4E-08 68.1 24.6 223 520-750 43-304 (320)
115 KOG1125 TPR repeat-containing 98.2 5.2E-05 1.1E-09 77.6 16.5 222 525-751 296-530 (579)
116 TIGR02552 LcrH_SycD type III s 98.2 1.7E-05 3.6E-10 69.5 11.5 114 638-756 5-122 (135)
117 COG5010 TadD Flp pilus assembl 98.2 0.00014 3E-09 67.4 17.0 153 588-745 70-228 (257)
118 PRK15179 Vi polysaccharide bio 98.2 0.00016 3.5E-09 80.1 20.7 126 583-713 85-214 (694)
119 KOG0548 Molecular co-chaperone 98.2 0.005 1.1E-07 63.1 28.9 213 452-678 228-453 (539)
120 KOG1070 rRNA processing protei 98.2 0.00024 5.3E-09 80.0 21.1 223 516-746 1460-1698(1710)
121 PRK15359 type III secretion sy 98.1 5.1E-05 1.1E-09 66.7 12.4 99 619-722 27-128 (144)
122 PLN02789 farnesyltranstransfer 98.1 0.00016 3.5E-09 72.5 17.3 196 560-761 48-263 (320)
123 TIGR03302 OM_YfiO outer membra 98.1 0.00018 4E-09 70.0 17.6 183 512-714 31-230 (235)
124 TIGR00756 PPR pentatricopeptid 98.1 4.8E-06 1E-10 52.7 4.3 35 111-145 1-35 (35)
125 PRK10370 formate-dependent nit 98.1 0.00017 3.7E-09 67.2 15.8 112 597-713 52-170 (198)
126 PRK14720 transcript cleavage f 98.0 0.0034 7.4E-08 70.6 27.1 176 550-757 117-315 (906)
127 PF09976 TPR_21: Tetratricopep 98.0 0.00024 5.2E-09 62.7 14.8 125 618-746 14-145 (145)
128 TIGR00756 PPR pentatricopeptid 98.0 9.8E-06 2.1E-10 51.2 4.2 35 212-246 1-35 (35)
129 KOG3081 Vesicle coat complex C 98.0 0.0024 5.2E-08 59.3 20.9 217 488-713 46-268 (299)
130 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 50.7 4.1 33 111-143 2-34 (34)
131 KOG1070 rRNA processing protei 98.0 0.0013 2.8E-08 74.4 22.4 215 482-702 1457-1686(1710)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00018 3.8E-09 73.6 14.4 125 587-717 172-298 (395)
133 KOG3060 Uncharacterized conser 97.9 0.0037 8.1E-08 57.6 21.0 182 527-713 25-217 (289)
134 KOG2053 Mitochondrial inherita 97.9 0.054 1.2E-06 59.3 41.1 25 690-714 582-606 (932)
135 PF13812 PPR_3: Pentatricopept 97.9 1.4E-05 3.1E-10 50.0 4.0 33 212-244 2-34 (34)
136 COG4783 Putative Zn-dependent 97.9 0.0032 6.9E-08 63.8 22.2 129 625-758 315-447 (484)
137 COG5010 TadD Flp pilus assembl 97.9 0.00087 1.9E-08 62.2 16.7 163 546-713 63-228 (257)
138 KOG3060 Uncharacterized conser 97.9 0.0017 3.7E-08 59.7 18.1 193 563-759 26-231 (289)
139 PRK14720 transcript cleavage f 97.9 0.00066 1.4E-08 76.1 18.8 212 512-761 29-265 (906)
140 PRK15179 Vi polysaccharide bio 97.9 0.00062 1.3E-08 75.6 18.1 178 524-713 59-242 (694)
141 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0002 4.3E-09 61.0 11.0 103 653-755 4-112 (119)
142 KOG0553 TPR repeat-containing 97.8 4.8E-05 1E-09 71.8 7.2 133 624-761 89-231 (304)
143 COG4783 Putative Zn-dependent 97.8 0.0028 6.1E-08 64.2 18.7 108 597-708 319-429 (484)
144 TIGR02552 LcrH_SycD type III s 97.8 0.00049 1.1E-08 60.2 12.2 102 615-721 16-120 (135)
145 PRK10153 DNA-binding transcrip 97.8 0.0006 1.3E-08 73.3 15.1 141 614-756 335-490 (517)
146 KOG0553 TPR repeat-containing 97.7 0.00028 6.2E-09 66.7 10.7 94 594-692 91-187 (304)
147 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.3E-10 46.5 3.4 31 111-141 1-31 (31)
148 PF04840 Vps16_C: Vps16, C-ter 97.6 0.079 1.7E-06 53.2 27.2 108 484-607 178-285 (319)
149 PF09976 TPR_21: Tetratricopep 97.6 0.0014 3.1E-08 57.8 13.3 113 597-712 24-143 (145)
150 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0013 2.8E-08 67.4 14.2 133 617-755 170-304 (395)
151 KOG2053 Mitochondrial inherita 97.6 0.19 4E-06 55.4 41.5 159 451-612 439-606 (932)
152 KOG1914 mRNA cleavage and poly 97.6 0.13 2.7E-06 53.2 35.8 133 615-750 365-503 (656)
153 PF01535 PPR: PPR repeat; Int 97.6 8.8E-05 1.9E-09 45.1 3.4 31 212-242 1-31 (31)
154 cd00189 TPR Tetratricopeptide 97.6 0.00067 1.4E-08 54.7 9.8 93 655-750 4-99 (100)
155 PF13432 TPR_16: Tetratricopep 97.6 0.00025 5.3E-09 52.5 6.4 61 693-753 3-65 (65)
156 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.6E-06 51.9 29.3 123 586-729 179-301 (319)
157 PF12895 Apc3: Anaphase-promot 97.5 0.00023 4.9E-09 55.9 5.6 76 630-711 3-82 (84)
158 PLN03088 SGT1, suppressor of 97.5 0.00053 1.1E-08 70.6 9.4 99 623-726 9-110 (356)
159 PF05843 Suf: Suppressor of fo 97.4 0.0034 7.5E-08 62.2 14.2 137 617-756 2-144 (280)
160 PRK15363 pathogenicity island 97.4 0.0059 1.3E-07 52.8 13.3 92 617-713 36-129 (157)
161 PF14938 SNAP: Soluble NSF att 97.4 0.012 2.6E-07 58.8 17.9 142 589-744 99-259 (282)
162 KOG1538 Uncharacterized conser 97.4 0.041 9E-07 57.6 21.2 78 450-536 749-826 (1081)
163 PF14938 SNAP: Soluble NSF att 97.4 0.016 3.5E-07 57.8 18.4 145 556-719 101-268 (282)
164 PRK15363 pathogenicity island 97.3 0.0021 4.5E-08 55.6 9.9 95 653-750 37-134 (157)
165 PF12895 Apc3: Anaphase-promot 97.3 0.00051 1.1E-08 53.9 5.7 82 664-745 2-84 (84)
166 PF08579 RPM2: Mitochondrial r 97.3 0.0021 4.6E-08 51.2 8.8 79 316-394 29-116 (120)
167 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.006 1.3E-07 51.7 12.7 100 617-718 3-108 (119)
168 PRK02603 photosystem I assembl 97.3 0.004 8.7E-08 56.9 12.1 117 615-752 34-153 (172)
169 PLN03088 SGT1, suppressor of 97.3 0.0031 6.7E-08 65.0 12.5 94 591-689 9-105 (356)
170 KOG1538 Uncharacterized conser 97.2 0.067 1.5E-06 56.1 21.0 40 429-471 616-655 (1081)
171 KOG2041 WD40 repeat protein [G 97.2 0.35 7.6E-06 51.5 26.2 125 294-436 747-875 (1189)
172 PF07079 DUF1347: Protein of u 97.2 0.33 7.1E-06 49.2 36.5 203 514-724 298-530 (549)
173 PF13414 TPR_11: TPR repeat; P 97.2 0.0007 1.5E-08 50.7 5.0 64 687-750 3-69 (69)
174 cd00189 TPR Tetratricopeptide 97.2 0.0041 8.9E-08 49.9 10.1 90 619-713 3-94 (100)
175 COG4700 Uncharacterized protei 97.2 0.023 5.1E-07 49.8 14.2 130 579-713 84-219 (251)
176 PF14559 TPR_19: Tetratricopep 97.1 0.00013 2.9E-09 54.5 0.6 58 663-723 3-62 (68)
177 PRK02603 photosystem I assembl 97.1 0.011 2.4E-07 53.9 13.3 88 583-672 34-127 (172)
178 PF08579 RPM2: Mitochondrial r 97.1 0.0045 9.7E-08 49.5 8.7 79 215-293 29-116 (120)
179 PF10037 MRP-S27: Mitochondria 97.1 0.0054 1.2E-07 63.2 12.0 116 280-395 65-186 (429)
180 PF10037 MRP-S27: Mitochondria 97.1 0.0093 2E-07 61.5 13.4 120 443-562 61-186 (429)
181 PF07079 DUF1347: Protein of u 97.1 0.42 9.2E-06 48.5 34.8 448 56-553 18-529 (549)
182 CHL00033 ycf3 photosystem I as 97.1 0.0068 1.5E-07 55.2 11.1 95 656-753 40-154 (168)
183 PRK10803 tol-pal system protei 97.0 0.008 1.7E-07 58.4 11.4 98 654-754 146-252 (263)
184 COG4700 Uncharacterized protei 96.9 0.13 2.8E-06 45.3 16.5 129 614-745 87-219 (251)
185 COG4235 Cytochrome c biogenesi 96.9 0.022 4.9E-07 54.6 13.2 105 648-755 152-263 (287)
186 PF06239 ECSIT: Evolutionarily 96.9 0.0071 1.5E-07 54.9 9.2 96 302-397 35-153 (228)
187 CHL00033 ycf3 photosystem I as 96.9 0.015 3.2E-07 52.9 11.7 94 616-712 35-138 (168)
188 PF05843 Suf: Suppressor of fo 96.9 0.038 8.2E-07 54.9 15.3 141 515-659 2-148 (280)
189 PF13371 TPR_9: Tetratricopept 96.9 0.0021 4.6E-08 48.7 5.1 63 694-756 2-66 (73)
190 PF13428 TPR_14: Tetratricopep 96.8 0.00075 1.6E-08 44.9 2.1 41 720-760 2-42 (44)
191 PF14559 TPR_19: Tetratricopep 96.8 0.0026 5.6E-08 47.4 5.3 48 629-678 4-52 (68)
192 PF13281 DUF4071: Domain of un 96.8 0.1 2.2E-06 52.8 17.9 125 629-756 195-342 (374)
193 KOG2280 Vacuolar assembly/sort 96.8 1.1 2.4E-05 48.6 28.3 107 587-710 687-793 (829)
194 PF06239 ECSIT: Evolutionarily 96.8 0.015 3.2E-07 52.9 10.3 97 504-600 35-154 (228)
195 PRK10866 outer membrane biogen 96.8 0.5 1.1E-05 45.7 21.7 60 520-581 38-101 (243)
196 PRK10153 DNA-binding transcrip 96.7 0.075 1.6E-06 57.4 16.7 48 663-713 432-479 (517)
197 PF12688 TPR_5: Tetratrico pep 96.6 0.046 1E-06 45.7 11.8 90 621-713 6-101 (120)
198 KOG2041 WD40 repeat protein [G 96.6 1.4 3.1E-05 47.2 28.2 153 360-540 747-904 (1189)
199 KOG0550 Molecular chaperone (D 96.6 0.09 2E-06 52.4 14.7 87 662-751 260-353 (486)
200 PF13414 TPR_11: TPR repeat; P 96.5 0.007 1.5E-07 45.2 5.5 62 615-678 2-65 (69)
201 PRK10803 tol-pal system protei 96.5 0.028 6E-07 54.8 10.9 100 618-719 145-250 (263)
202 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.3 2.7E-05 45.1 29.5 143 615-761 396-544 (660)
203 PRK10866 outer membrane biogen 96.4 0.23 5E-06 48.0 16.9 68 188-255 40-113 (243)
204 PF13432 TPR_16: Tetratricopep 96.4 0.0079 1.7E-07 44.3 5.4 53 624-678 5-58 (65)
205 KOG2280 Vacuolar assembly/sort 96.4 1.9 4.2E-05 46.9 27.7 337 239-607 425-793 (829)
206 COG4235 Cytochrome c biogenesi 96.4 0.051 1.1E-06 52.3 11.8 110 614-728 154-269 (287)
207 PF13424 TPR_12: Tetratricopep 96.3 0.0035 7.6E-08 48.3 2.8 61 688-748 6-75 (78)
208 KOG0550 Molecular chaperone (D 96.2 0.36 7.7E-06 48.4 16.5 151 523-678 178-348 (486)
209 PF12921 ATP13: Mitochondrial 96.0 0.07 1.5E-06 45.1 9.7 79 617-695 3-96 (126)
210 KOG2796 Uncharacterized conser 96.0 0.21 4.5E-06 46.7 12.9 143 618-761 179-328 (366)
211 PF03704 BTAD: Bacterial trans 95.9 0.055 1.2E-06 47.8 9.2 71 618-690 64-139 (146)
212 PF13525 YfiO: Outer membrane 95.9 1.6 3.4E-05 41.1 20.4 61 521-581 12-74 (203)
213 COG3898 Uncharacterized membra 95.8 2.4 5.3E-05 42.4 27.3 215 526-747 166-391 (531)
214 PF13371 TPR_9: Tetratricopept 95.8 0.05 1.1E-06 41.1 7.2 53 624-678 3-56 (73)
215 PF12688 TPR_5: Tetratrico pep 95.7 0.18 4E-06 42.1 10.9 57 421-477 9-67 (120)
216 KOG2796 Uncharacterized conser 95.7 0.62 1.3E-05 43.7 14.6 141 414-556 178-326 (366)
217 PF13512 TPR_18: Tetratricopep 95.6 0.31 6.7E-06 41.6 11.8 20 735-754 115-134 (142)
218 COG3898 Uncharacterized membra 95.6 2.9 6.4E-05 41.8 25.0 189 516-713 190-389 (531)
219 PF07719 TPR_2: Tetratricopept 95.5 0.029 6.4E-07 34.6 4.3 33 720-752 2-34 (34)
220 PRK15331 chaperone protein Sic 95.4 0.086 1.9E-06 46.1 8.1 84 626-713 47-131 (165)
221 PF00515 TPR_1: Tetratricopept 95.4 0.024 5.3E-07 35.0 3.6 33 720-752 2-34 (34)
222 COG1729 Uncharacterized protei 95.3 0.15 3.3E-06 48.5 10.0 100 654-754 145-250 (262)
223 COG0457 NrfG FOG: TPR repeat [ 95.3 2.8 6.2E-05 40.1 23.5 198 549-751 59-268 (291)
224 PF13424 TPR_12: Tetratricopep 95.2 0.057 1.2E-06 41.5 5.8 60 653-712 7-71 (78)
225 KOG1130 Predicted G-alpha GTPa 95.1 0.48 1E-05 47.3 13.0 126 586-711 197-339 (639)
226 PF10300 DUF3808: Protein of u 95.1 0.51 1.1E-05 50.7 14.8 131 618-750 231-378 (468)
227 PF12921 ATP13: Mitochondrial 95.1 0.22 4.7E-06 42.1 9.4 84 650-733 1-102 (126)
228 PF13281 DUF4071: Domain of un 94.9 2 4.4E-05 43.7 17.1 163 554-718 146-337 (374)
229 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.083 1.8E-06 54.2 7.2 61 650-713 74-138 (453)
230 PRK11906 transcriptional regul 94.7 0.49 1.1E-05 48.9 12.4 142 599-746 273-434 (458)
231 KOG0543 FKBP-type peptidyl-pro 94.7 0.33 7.2E-06 48.7 10.8 97 652-751 258-358 (397)
232 PRK15331 chaperone protein Sic 94.6 0.68 1.5E-05 40.6 11.2 84 661-747 47-133 (165)
233 PF13525 YfiO: Outer membrane 94.5 0.68 1.5E-05 43.5 12.4 54 591-644 12-70 (203)
234 KOG1920 IkappaB kinase complex 94.5 12 0.00027 43.4 24.8 157 497-713 894-1052(1265)
235 KOG3941 Intermediate in Toll s 94.4 0.19 4.2E-06 47.4 8.0 109 99-207 54-186 (406)
236 PRK09687 putative lyase; Provi 94.4 5.7 0.00012 39.3 24.8 121 75-197 33-159 (280)
237 PF13512 TPR_18: Tetratricopep 94.3 0.36 7.8E-06 41.2 8.6 53 661-713 20-73 (142)
238 KOG0543 FKBP-type peptidyl-pro 94.2 0.24 5.1E-06 49.7 8.5 74 688-761 258-333 (397)
239 PF03704 BTAD: Bacterial trans 94.1 0.14 2.9E-06 45.3 6.3 66 653-721 64-138 (146)
240 KOG3941 Intermediate in Toll s 94.1 0.35 7.7E-06 45.7 8.9 111 198-308 52-186 (406)
241 COG1729 Uncharacterized protei 94.0 0.52 1.1E-05 44.9 10.1 101 618-719 144-248 (262)
242 PF04184 ST7: ST7 protein; In 94.0 2.6 5.6E-05 43.9 15.6 104 653-756 261-383 (539)
243 KOG1920 IkappaB kinase complex 93.8 17 0.00036 42.4 22.5 118 586-717 910-1029(1265)
244 smart00299 CLH Clathrin heavy 93.6 3.9 8.5E-05 35.6 14.6 64 654-730 72-136 (140)
245 KOG4555 TPR repeat-containing 93.4 1.3 2.9E-05 36.6 9.9 87 625-713 52-141 (175)
246 PF13181 TPR_8: Tetratricopept 93.1 0.15 3.3E-06 31.3 3.5 33 720-752 2-34 (34)
247 PF08631 SPO22: Meiosis protei 93.0 10 0.00022 37.7 25.4 18 729-746 256-273 (278)
248 KOG4555 TPR repeat-containing 93.0 0.55 1.2E-05 38.8 7.3 89 660-751 52-147 (175)
249 COG2976 Uncharacterized protei 93.0 4.5 9.8E-05 36.5 13.4 128 619-752 57-192 (207)
250 PRK11906 transcriptional regul 93.0 3.1 6.7E-05 43.2 14.3 144 564-713 273-433 (458)
251 smart00299 CLH Clathrin heavy 92.9 3.7 8E-05 35.7 13.3 113 617-744 8-121 (140)
252 PF04053 Coatomer_WDAD: Coatom 92.9 3 6.6E-05 44.2 14.7 162 523-717 270-432 (443)
253 COG4649 Uncharacterized protei 92.6 6.3 0.00014 34.8 13.3 131 613-747 56-195 (221)
254 KOG1130 Predicted G-alpha GTPa 92.5 0.39 8.5E-06 47.9 7.0 261 491-751 25-347 (639)
255 PLN03098 LPA1 LOW PSII ACCUMUL 92.4 0.6 1.3E-05 48.2 8.4 64 582-645 73-141 (453)
256 PF13170 DUF4003: Protein of u 92.3 12 0.00027 37.2 17.4 141 531-703 79-233 (297)
257 PF09613 HrpB1_HrpK: Bacterial 92.3 2.1 4.6E-05 37.4 10.4 53 626-680 20-73 (160)
258 KOG1941 Acetylcholine receptor 92.1 2.3 4.9E-05 42.1 11.3 122 591-712 129-271 (518)
259 PF13176 TPR_7: Tetratricopept 91.8 0.24 5.3E-06 31.0 3.2 28 721-748 1-28 (36)
260 PF14853 Fis1_TPR_C: Fis1 C-te 91.7 0.13 2.7E-06 35.5 2.0 37 723-759 5-41 (53)
261 KOG1941 Acetylcholine receptor 91.7 3.2 6.9E-05 41.1 11.9 199 550-748 44-275 (518)
262 PF02259 FAT: FAT domain; Int 91.6 7.6 0.00016 40.3 16.3 144 615-761 145-300 (352)
263 COG3629 DnrI DNA-binding trans 91.4 1.6 3.4E-05 42.5 9.7 79 616-696 153-236 (280)
264 KOG1586 Protein required for f 91.4 12 0.00027 34.9 15.3 16 663-678 166-181 (288)
265 KOG2114 Vacuolar assembly/sort 91.2 30 0.00064 38.8 27.1 118 82-207 337-458 (933)
266 COG3118 Thioredoxin domain-con 91.1 10 0.00022 36.9 14.4 137 561-702 146-287 (304)
267 KOG1258 mRNA processing protei 91.1 25 0.00054 37.9 28.9 82 359-441 91-179 (577)
268 PF09205 DUF1955: Domain of un 90.9 8.8 0.00019 32.2 11.8 137 424-581 13-152 (161)
269 PF13428 TPR_14: Tetratricopep 90.6 0.91 2E-05 29.9 5.3 30 618-649 3-32 (44)
270 KOG2610 Uncharacterized conser 90.6 14 0.00029 36.5 14.8 144 597-744 116-272 (491)
271 COG4105 ComL DNA uptake lipopr 90.6 16 0.00035 34.8 18.1 62 692-753 172-238 (254)
272 PF10300 DUF3808: Protein of u 90.6 16 0.00034 39.5 17.5 157 519-678 193-374 (468)
273 PF04053 Coatomer_WDAD: Coatom 90.5 4.2 9E-05 43.2 12.7 106 350-478 298-403 (443)
274 COG0457 NrfG FOG: TPR repeat [ 90.5 16 0.00035 34.7 22.8 184 564-751 38-234 (291)
275 KOG2114 Vacuolar assembly/sort 90.5 34 0.00074 38.4 28.2 118 285-409 338-458 (933)
276 KOG4648 Uncharacterized conser 90.2 0.66 1.4E-05 45.2 5.8 53 624-678 105-158 (536)
277 PRK09687 putative lyase; Provi 90.0 21 0.00046 35.3 26.7 234 482-729 36-277 (280)
278 KOG2066 Vacuolar assembly/sort 90.0 36 0.00078 37.9 23.8 76 382-460 392-467 (846)
279 PF00637 Clathrin: Region in C 89.9 0.066 1.4E-06 47.1 -1.0 85 150-237 12-96 (143)
280 KOG2610 Uncharacterized conser 89.8 8.6 0.00019 37.8 12.8 151 526-678 115-274 (491)
281 PF07035 Mic1: Colon cancer-as 89.8 14 0.00031 32.9 15.3 40 368-407 15-54 (167)
282 PF04097 Nic96: Nup93/Nic96; 89.5 30 0.00065 38.9 19.1 49 346-395 110-158 (613)
283 PF13174 TPR_6: Tetratricopept 89.1 0.67 1.4E-05 28.0 3.5 31 722-752 3-33 (33)
284 PF07035 Mic1: Colon cancer-as 87.8 20 0.00043 32.1 14.1 57 285-341 93-149 (167)
285 TIGR02508 type_III_yscG type I 87.6 7.1 0.00015 30.8 8.6 89 58-150 19-107 (115)
286 KOG4234 TPR repeat-containing 87.6 0.74 1.6E-05 41.3 3.9 84 625-713 104-194 (271)
287 KOG1585 Protein required for f 87.4 26 0.00057 33.1 13.9 56 654-710 193-250 (308)
288 TIGR02561 HrpB1_HrpK type III 87.2 11 0.00024 32.5 10.4 26 721-746 95-120 (153)
289 PF09205 DUF1955: Domain of un 87.0 17 0.00038 30.5 13.6 64 618-683 88-151 (161)
290 COG3118 Thioredoxin domain-con 86.9 32 0.0007 33.6 18.5 136 594-733 144-286 (304)
291 COG4785 NlpI Lipoprotein NlpI, 86.7 2 4.3E-05 39.3 6.1 84 625-713 74-159 (297)
292 PF10602 RPN7: 26S proteasome 86.3 7.3 0.00016 35.5 9.8 95 617-713 37-139 (177)
293 PF13176 TPR_7: Tetratricopept 86.2 1.3 2.7E-05 27.7 3.5 25 689-713 1-25 (36)
294 smart00028 TPR Tetratricopepti 86.2 1.4 2.9E-05 25.9 3.7 31 721-751 3-33 (34)
295 PF13431 TPR_17: Tetratricopep 86.0 0.59 1.3E-05 28.7 1.8 20 687-706 13-32 (34)
296 COG4649 Uncharacterized protei 85.8 11 0.00025 33.3 9.9 87 626-713 104-193 (221)
297 COG4105 ComL DNA uptake lipopr 85.4 35 0.00076 32.6 20.5 176 523-714 43-231 (254)
298 PF08631 SPO22: Meiosis protei 85.2 42 0.00092 33.3 24.0 67 483-549 121-192 (278)
299 PF00515 TPR_1: Tetratricopept 85.1 2.1 4.5E-05 26.1 4.1 27 618-644 3-29 (34)
300 PRK11619 lytic murein transgly 85.0 74 0.0016 36.0 31.6 125 629-760 254-383 (644)
301 PF13170 DUF4003: Protein of u 84.3 16 0.00035 36.5 11.9 60 329-388 160-223 (297)
302 KOG4570 Uncharacterized conser 84.3 4.7 0.0001 39.1 7.7 102 73-175 58-165 (418)
303 PF13431 TPR_17: Tetratricopep 83.7 1.1 2.4E-05 27.5 2.3 31 639-671 2-33 (34)
304 COG5107 RNA14 Pre-mRNA 3'-end 83.6 59 0.0013 33.8 36.7 70 75-144 38-110 (660)
305 COG1747 Uncharacterized N-term 83.3 66 0.0014 34.1 17.1 165 584-755 66-241 (711)
306 COG4455 ImpE Protein of avirul 82.7 15 0.00032 33.9 9.7 124 619-753 4-139 (273)
307 PRK15180 Vi polysaccharide bio 82.6 11 0.00024 38.9 9.9 130 628-761 301-434 (831)
308 PF10602 RPN7: 26S proteasome 82.5 18 0.00038 33.0 10.6 62 516-577 38-101 (177)
309 COG3629 DnrI DNA-binding trans 82.5 8.5 0.00018 37.6 8.9 73 652-727 154-235 (280)
310 PF09613 HrpB1_HrpK: Bacterial 82.3 32 0.0007 30.3 11.4 48 663-713 22-70 (160)
311 PF04184 ST7: ST7 protein; In 82.3 41 0.00089 35.5 13.9 63 582-644 257-323 (539)
312 PF07719 TPR_2: Tetratricopept 81.5 3.5 7.6E-05 24.9 4.1 27 618-644 3-29 (34)
313 COG2976 Uncharacterized protei 81.1 44 0.00095 30.5 13.6 88 591-680 96-188 (207)
314 KOG4570 Uncharacterized conser 80.8 14 0.00031 36.1 9.4 101 579-680 59-164 (418)
315 COG4455 ImpE Protein of avirul 80.2 8.2 0.00018 35.5 7.2 74 653-729 3-82 (273)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 79.9 9.6 0.00021 30.0 6.5 48 125-172 22-69 (103)
317 KOG2066 Vacuolar assembly/sort 79.2 1.2E+02 0.0025 34.2 23.8 106 217-359 362-467 (846)
318 PHA02875 ankyrin repeat protei 79.2 64 0.0014 34.3 15.5 20 187-206 72-91 (413)
319 PF13374 TPR_10: Tetratricopep 79.2 3.7 8E-05 26.3 3.8 28 720-747 3-30 (42)
320 cd00923 Cyt_c_Oxidase_Va Cytoc 78.9 11 0.00024 29.6 6.5 62 632-695 23-84 (103)
321 KOG4234 TPR repeat-containing 78.5 13 0.00027 33.8 7.8 83 594-678 105-195 (271)
322 KOG4642 Chaperone-dependent E3 78.4 21 0.00046 33.5 9.4 118 594-713 20-143 (284)
323 PF00637 Clathrin: Region in C 78.3 1.8 4E-05 37.8 2.8 84 252-338 13-96 (143)
324 KOG0890 Protein kinase of the 77.9 2.2E+02 0.0048 36.8 31.0 69 687-755 1670-1739(2382)
325 KOG1464 COP9 signalosome, subu 77.7 68 0.0015 30.7 16.7 221 518-743 69-327 (440)
326 PF02284 COX5A: Cytochrome c o 77.4 17 0.00036 29.0 7.2 60 634-695 28-87 (108)
327 PF02284 COX5A: Cytochrome c o 76.7 18 0.00038 28.9 7.2 60 431-491 28-87 (108)
328 KOG4648 Uncharacterized conser 76.7 8.2 0.00018 38.0 6.6 91 592-686 105-197 (536)
329 PF13762 MNE1: Mitochondrial s 76.6 25 0.00055 30.4 8.9 87 73-159 31-129 (145)
330 PF13929 mRNA_stabil: mRNA sta 76.2 82 0.0018 30.9 13.9 61 580-640 198-262 (292)
331 PF02259 FAT: FAT domain; Int 76.0 1E+02 0.0022 31.8 20.4 62 583-644 145-212 (352)
332 PF07721 TPR_4: Tetratricopept 75.3 5.3 0.00011 22.6 3.2 20 692-711 6-25 (26)
333 PF04910 Tcf25: Transcriptiona 75.1 1.1E+02 0.0024 31.8 18.6 52 659-713 111-165 (360)
334 PF13181 TPR_8: Tetratricopept 74.3 5.2 0.00011 24.2 3.3 27 618-644 3-29 (34)
335 PRK13800 putative oxidoreducta 74.1 2E+02 0.0043 34.4 23.3 92 279-374 787-879 (897)
336 KOG1464 COP9 signalosome, subu 74.0 86 0.0019 30.1 15.2 207 527-733 40-286 (440)
337 TIGR02508 type_III_yscG type I 73.1 36 0.00078 27.1 8.0 86 160-249 20-105 (115)
338 PF06552 TOM20_plant: Plant sp 73.1 8.9 0.00019 34.3 5.5 73 667-744 51-136 (186)
339 PHA02875 ankyrin repeat protei 72.9 74 0.0016 33.8 13.9 168 65-246 16-196 (413)
340 KOG3364 Membrane protein invol 72.0 15 0.00032 31.1 6.1 87 684-770 29-123 (149)
341 KOG1258 mRNA processing protei 71.9 1.6E+02 0.0034 32.2 26.3 178 381-562 296-488 (577)
342 PF13374 TPR_10: Tetratricopep 70.7 10 0.00023 24.1 4.3 26 618-643 4-29 (42)
343 COG4976 Predicted methyltransf 70.4 7.9 0.00017 35.9 4.6 60 696-755 4-65 (287)
344 KOG4279 Serine/threonine prote 69.9 33 0.00071 37.9 9.6 101 626-753 297-400 (1226)
345 PF04097 Nic96: Nup93/Nic96; 69.5 2E+02 0.0044 32.5 22.5 48 211-260 112-159 (613)
346 PF13762 MNE1: Mitochondrial s 69.4 66 0.0014 28.0 9.7 76 386-461 43-128 (145)
347 KOG0276 Vesicle coat complex C 69.1 50 0.0011 35.6 10.6 106 593-717 646-751 (794)
348 PF04190 DUF410: Protein of un 69.0 1.2E+02 0.0026 29.7 14.2 141 322-477 20-170 (260)
349 PF09477 Type_III_YscG: Bacter 68.8 52 0.0011 26.6 8.1 83 55-140 17-99 (116)
350 PF13929 mRNA_stabil: mRNA sta 68.6 1.2E+02 0.0027 29.7 15.7 63 545-607 198-261 (292)
351 KOG1585 Protein required for f 68.3 1.1E+02 0.0024 29.1 14.7 155 587-755 94-263 (308)
352 PF07163 Pex26: Pex26 protein; 67.3 56 0.0012 31.7 9.6 87 521-607 90-181 (309)
353 PF13934 ELYS: Nuclear pore co 66.6 1.2E+02 0.0026 28.9 12.8 21 657-677 114-134 (226)
354 KOG0890 Protein kinase of the 66.4 4E+02 0.0086 34.7 33.0 107 651-761 1670-1797(2382)
355 KOG2063 Vacuolar assembly/sort 65.8 1.6E+02 0.0034 34.3 14.5 232 113-394 507-744 (877)
356 PF11207 DUF2989: Protein of u 65.7 35 0.00077 31.4 7.8 43 664-706 153-197 (203)
357 TIGR02561 HrpB1_HrpK type III 63.4 1E+02 0.0022 26.9 11.9 48 629-678 23-71 (153)
358 PRK13800 putative oxidoreducta 63.2 3.3E+02 0.0071 32.6 23.9 248 480-747 632-880 (897)
359 KOG0276 Vesicle coat complex C 62.9 92 0.002 33.8 11.1 101 559-677 647-747 (794)
360 PRK10941 hypothetical protein; 62.6 27 0.00058 34.3 7.0 63 693-755 187-251 (269)
361 PF11207 DUF2989: Protein of u 62.6 49 0.0011 30.5 8.1 73 531-604 123-198 (203)
362 PF13174 TPR_6: Tetratricopept 61.7 12 0.00025 22.3 3.0 21 624-644 8-28 (33)
363 COG1747 Uncharacterized N-term 61.6 2.3E+02 0.005 30.3 24.2 90 513-607 65-154 (711)
364 PF11846 DUF3366: Domain of un 60.6 26 0.00056 32.5 6.5 51 663-713 120-170 (193)
365 PRK12798 chemotaxis protein; R 60.2 2.2E+02 0.0048 29.7 20.4 152 597-750 125-288 (421)
366 PF07163 Pex26: Pex26 protein; 59.9 1E+02 0.0022 30.0 9.9 84 591-674 90-181 (309)
367 PF09670 Cas_Cas02710: CRISPR- 59.8 1.1E+02 0.0025 31.9 11.6 52 626-678 141-196 (379)
368 PF10579 Rapsyn_N: Rapsyn N-te 59.7 17 0.00038 27.4 3.9 45 664-708 19-64 (80)
369 PF11846 DUF3366: Domain of un 59.6 29 0.00063 32.2 6.6 32 647-678 140-171 (193)
370 COG2909 MalT ATP-dependent tra 59.6 3.3E+02 0.0071 31.5 25.8 183 425-607 470-682 (894)
371 KOG2422 Uncharacterized conser 59.3 2.7E+02 0.0058 30.4 17.1 88 659-750 350-450 (665)
372 TIGR03504 FimV_Cterm FimV C-te 59.1 22 0.00047 23.5 3.9 24 622-645 5-28 (44)
373 KOG2297 Predicted translation 59.1 1.9E+02 0.0041 28.6 11.9 18 617-634 322-339 (412)
374 KOG0991 Replication factor C, 57.5 1.5E+02 0.0032 28.1 10.2 143 86-252 137-279 (333)
375 PF09477 Type_III_YscG: Bacter 57.4 97 0.0021 25.2 7.8 85 464-552 22-106 (116)
376 PF10345 Cohesin_load: Cohesin 57.3 3.3E+02 0.0072 30.8 34.4 163 110-273 59-252 (608)
377 PF10579 Rapsyn_N: Rapsyn N-te 56.8 30 0.00065 26.2 4.7 47 628-674 18-66 (80)
378 COG3947 Response regulator con 56.8 2.1E+02 0.0044 28.2 15.2 70 618-689 281-355 (361)
379 PF06552 TOM20_plant: Plant sp 56.6 1.1E+02 0.0024 27.7 9.0 60 633-697 52-123 (186)
380 TIGR03504 FimV_Cterm FimV C-te 56.3 15 0.00033 24.1 2.9 24 116-139 5-28 (44)
381 KOG0376 Serine-threonine phosp 56.1 29 0.00063 36.3 6.2 103 625-732 13-118 (476)
382 PRK11619 lytic murein transgly 55.6 3.6E+02 0.0078 30.7 38.9 73 287-361 105-177 (644)
383 PHA02537 M terminase endonucle 54.9 1.3E+02 0.0028 28.7 9.8 111 622-752 89-211 (230)
384 PF07720 TPR_3: Tetratricopept 54.7 37 0.0008 21.2 4.2 32 721-752 3-36 (36)
385 KOG0376 Serine-threonine phosp 54.3 17 0.00036 38.0 4.2 101 658-761 11-114 (476)
386 smart00386 HAT HAT (Half-A-TPR 53.0 9.6 0.00021 22.5 1.5 25 733-757 1-25 (33)
387 KOG4077 Cytochrome c oxidase, 52.6 49 0.0011 27.6 5.7 46 128-173 67-112 (149)
388 COG5159 RPN6 26S proteasome re 52.4 2.4E+02 0.0051 27.6 11.3 31 421-451 11-41 (421)
389 PF04034 DUF367: Domain of unk 51.8 1E+02 0.0023 25.9 7.6 60 687-746 66-126 (127)
390 KOG4507 Uncharacterized conser 51.8 35 0.00076 36.5 6.0 92 663-757 619-714 (886)
391 PF14689 SPOB_a: Sensor_kinase 51.1 28 0.0006 25.0 3.8 46 632-679 6-51 (62)
392 KOG2659 LisH motif-containing 51.0 1.8E+02 0.0039 27.4 9.8 94 617-713 27-129 (228)
393 TIGR02270 conserved hypothetic 50.9 3.3E+02 0.0071 28.9 20.3 194 98-310 88-281 (410)
394 KOG1550 Extracellular protein 50.7 4E+02 0.0086 29.7 16.8 48 599-646 308-358 (552)
395 PRK15180 Vi polysaccharide bio 50.2 3.4E+02 0.0073 28.8 13.2 83 594-678 333-418 (831)
396 KOG4077 Cytochrome c oxidase, 49.2 81 0.0018 26.4 6.4 59 634-694 67-125 (149)
397 PF11848 DUF3368: Domain of un 49.1 63 0.0014 21.8 5.0 34 221-254 12-45 (48)
398 KOG2297 Predicted translation 48.9 2.8E+02 0.0061 27.5 13.1 22 513-534 320-341 (412)
399 PF12862 Apc5: Anaphase-promot 48.9 56 0.0012 25.9 5.7 20 729-748 51-70 (94)
400 KOG1586 Protein required for f 48.7 2.5E+02 0.0053 26.8 20.9 59 625-686 163-227 (288)
401 COG0790 FOG: TPR repeat, SEL1 48.5 2.9E+02 0.0063 27.5 18.1 147 599-750 92-268 (292)
402 PF14853 Fis1_TPR_C: Fis1 C-te 48.2 61 0.0013 22.4 4.9 34 622-657 7-40 (53)
403 cd08819 CARD_MDA5_2 Caspase ac 48.1 1.2E+02 0.0027 23.5 6.9 39 293-332 48-86 (88)
404 PF10366 Vps39_1: Vacuolar sor 48.1 1.3E+02 0.0029 24.6 7.8 55 83-138 3-67 (108)
405 cd08819 CARD_MDA5_2 Caspase ac 48.0 1.2E+02 0.0025 23.7 6.7 38 394-432 48-85 (88)
406 PF11848 DUF3368: Domain of un 47.9 45 0.00098 22.4 4.2 32 122-153 14-45 (48)
407 PRK13342 recombination factor 47.7 3.7E+02 0.0081 28.6 14.5 93 243-353 173-271 (413)
408 PHA03100 ankyrin repeat protei 47.1 3.8E+02 0.0082 29.1 13.9 19 86-104 39-57 (480)
409 PRK10941 hypothetical protein; 46.3 1.8E+02 0.0039 28.6 9.8 56 621-678 186-242 (269)
410 KOG3824 Huntingtin interacting 46.0 22 0.00048 34.6 3.3 63 698-760 127-191 (472)
411 KOG0545 Aryl-hydrocarbon recep 44.9 91 0.002 29.6 6.9 62 690-751 233-296 (329)
412 PF10366 Vps39_1: Vacuolar sor 44.0 1E+02 0.0022 25.3 6.5 27 516-542 41-67 (108)
413 PF11838 ERAP1_C: ERAP1-like C 44.0 3.6E+02 0.0078 27.3 17.2 80 161-240 146-230 (324)
414 COG2909 MalT ATP-dependent tra 43.8 5.8E+02 0.013 29.7 30.6 19 459-477 426-444 (894)
415 cd00280 TRFH Telomeric Repeat 43.4 2.6E+02 0.0056 25.5 10.4 62 667-728 85-152 (200)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 43.2 1.9E+02 0.004 24.6 8.3 42 669-711 81-123 (126)
417 KOG3807 Predicted membrane pro 42.3 3E+02 0.0065 27.5 10.2 20 737-756 380-399 (556)
418 PF04190 DUF410: Protein of un 41.9 3.5E+02 0.0075 26.5 17.9 123 541-680 41-170 (260)
419 PF12926 MOZART2: Mitotic-spin 41.6 1.6E+02 0.0036 22.8 6.6 42 368-409 29-70 (88)
420 PF06957 COPI_C: Coatomer (COP 41.5 96 0.0021 32.6 7.3 40 714-753 293-334 (422)
421 PF11663 Toxin_YhaV: Toxin wit 38.9 38 0.00083 28.7 3.3 33 525-559 106-138 (140)
422 COG4941 Predicted RNA polymera 38.5 4.3E+02 0.0094 26.7 11.4 119 632-755 272-401 (415)
423 KOG2581 26S proteasome regulat 38.3 4.8E+02 0.01 27.2 12.3 123 629-751 139-279 (493)
424 COG4785 NlpI Lipoprotein NlpI, 38.2 3.5E+02 0.0075 25.5 16.8 60 585-644 100-161 (297)
425 KOG3364 Membrane protein invol 37.7 2.7E+02 0.0058 24.0 9.1 70 648-719 29-104 (149)
426 PRK10564 maltose regulon perip 37.1 59 0.0013 32.1 4.7 40 213-252 259-298 (303)
427 PF07575 Nucleopor_Nup85: Nup8 36.6 1.9E+02 0.004 32.4 9.4 27 326-352 509-535 (566)
428 KOG2471 TPR repeat-containing 36.2 5.7E+02 0.012 27.4 15.9 107 626-732 250-382 (696)
429 COG0735 Fur Fe2+/Zn2+ uptake r 36.2 1.6E+02 0.0035 25.7 7.0 63 232-295 7-69 (145)
430 PF10345 Cohesin_load: Cohesin 36.2 6.9E+02 0.015 28.3 36.1 49 525-573 372-428 (608)
431 KOG2396 HAT (Half-A-TPR) repea 35.6 5.9E+02 0.013 27.4 32.8 66 210-276 104-170 (568)
432 KOG4642 Chaperone-dependent E3 35.6 4.1E+02 0.0088 25.5 9.6 118 559-678 20-144 (284)
433 PF11817 Foie-gras_1: Foie gra 35.3 99 0.0021 30.0 6.2 19 659-677 186-204 (247)
434 KOG4567 GTPase-activating prot 35.1 3.9E+02 0.0085 26.6 9.7 77 332-413 263-349 (370)
435 PF11663 Toxin_YhaV: Toxin wit 34.9 45 0.00099 28.2 3.1 33 627-661 106-138 (140)
436 KOG1550 Extracellular protein 34.8 6.8E+02 0.015 27.9 22.1 16 735-750 525-540 (552)
437 COG3947 Response regulator con 34.1 1.7E+02 0.0037 28.8 7.1 56 655-713 283-339 (361)
438 PF12069 DUF3549: Protein of u 33.9 5.3E+02 0.011 26.3 12.6 134 489-624 172-306 (340)
439 PRK02287 hypothetical protein; 33.3 2.8E+02 0.006 25.0 7.8 62 687-748 107-169 (171)
440 KOG0686 COP9 signalosome, subu 33.2 5.8E+02 0.013 26.6 11.7 59 283-341 152-216 (466)
441 PF07575 Nucleopor_Nup85: Nup8 32.7 7.5E+02 0.016 27.7 17.9 72 300-373 393-464 (566)
442 COG5191 Uncharacterized conser 32.1 55 0.0012 32.1 3.6 72 686-757 106-180 (435)
443 TIGR01503 MthylAspMut_E methyl 31.6 1.7E+02 0.0037 30.9 7.2 48 226-276 69-116 (480)
444 KOG4279 Serine/threonine prote 31.5 1.9E+02 0.0041 32.4 7.7 27 618-644 203-229 (1226)
445 PF11768 DUF3312: Protein of u 31.4 4.7E+02 0.01 28.5 10.5 44 693-739 500-543 (545)
446 PRK11639 zinc uptake transcrip 31.3 1.7E+02 0.0037 26.4 6.6 46 114-159 29-74 (169)
447 cd00280 TRFH Telomeric Repeat 31.0 3.1E+02 0.0068 25.0 7.7 39 659-701 119-157 (200)
448 cd08326 CARD_CASP9 Caspase act 30.9 1.5E+02 0.0032 23.0 5.2 62 64-129 19-80 (84)
449 PLN03192 Voltage-dependent pot 30.9 5E+02 0.011 30.8 12.1 55 251-309 624-680 (823)
450 KOG1308 Hsp70-interacting prot 30.8 54 0.0012 32.8 3.4 89 595-686 125-216 (377)
451 PHA03100 ankyrin repeat protei 30.4 7.3E+02 0.016 26.9 13.3 25 118-146 40-64 (480)
452 COG5108 RPO41 Mitochondrial DN 30.0 6.8E+02 0.015 27.9 11.3 24 554-577 33-56 (1117)
453 PF12862 Apc5: Anaphase-promot 29.9 2.4E+02 0.0053 22.2 6.6 21 659-679 49-69 (94)
454 PRK10564 maltose regulon perip 29.8 1E+02 0.0022 30.5 5.0 40 617-656 258-297 (303)
455 KOG2396 HAT (Half-A-TPR) repea 29.8 7.4E+02 0.016 26.7 32.6 103 648-752 456-564 (568)
456 PF12926 MOZART2: Mitotic-spin 29.6 2.7E+02 0.0059 21.7 6.6 41 469-509 29-69 (88)
457 PRK13342 recombination factor 29.5 7.1E+02 0.015 26.4 17.3 45 416-460 230-277 (413)
458 PF09986 DUF2225: Uncharacteri 29.4 3E+02 0.0066 26.0 8.1 27 723-749 169-195 (214)
459 PF08424 NRDE-2: NRDE-2, neces 28.4 6.5E+02 0.014 25.6 14.3 114 633-751 48-186 (321)
460 PF11817 Foie-gras_1: Foie gra 27.9 1.8E+02 0.004 28.2 6.7 59 687-745 178-244 (247)
461 KOG0292 Vesicle coat complex C 27.2 3.8E+02 0.0083 30.9 9.2 158 555-749 626-783 (1202)
462 cd08332 CARD_CASP2 Caspase act 27.2 2E+02 0.0043 22.6 5.5 58 64-125 23-80 (90)
463 KOG4521 Nuclear pore complex, 26.7 1.2E+03 0.026 28.3 13.9 215 519-779 925-1167(1480)
464 COG5071 RPN5 26S proteasome re 26.6 6.4E+02 0.014 25.0 11.0 53 659-711 179-236 (439)
465 COG0735 Fur Fe2+/Zn2+ uptake r 26.5 2.3E+02 0.0049 24.8 6.3 61 134-195 10-70 (145)
466 KOG2659 LisH motif-containing 26.3 4.6E+02 0.0099 24.9 8.3 99 580-678 22-130 (228)
467 PF14689 SPOB_a: Sensor_kinase 26.1 1.1E+02 0.0025 21.9 3.6 24 621-644 28-51 (62)
468 KOG0687 26S proteasome regulat 25.9 7E+02 0.015 25.2 11.6 166 497-682 36-212 (393)
469 PF09670 Cas_Cas02710: CRISPR- 25.6 7.9E+02 0.017 25.7 12.0 55 523-578 140-198 (379)
470 cd07153 Fur_like Ferric uptake 25.4 1.4E+02 0.003 24.7 4.7 46 115-160 5-50 (116)
471 TIGR02270 conserved hypothetic 24.6 8.6E+02 0.019 25.8 23.1 110 178-296 98-207 (410)
472 PF02184 HAT: HAT (Half-A-TPR) 24.2 1.8E+02 0.0038 17.7 3.5 22 632-655 3-24 (32)
473 PF10516 SHNi-TPR: SHNi-TPR; 23.8 1.6E+02 0.0034 18.7 3.4 28 721-748 3-30 (38)
474 KOG2908 26S proteasome regulat 23.7 4.9E+02 0.011 26.4 8.3 61 619-679 78-143 (380)
475 KOG2758 Translation initiation 23.5 7.7E+02 0.017 24.8 13.4 166 569-747 20-195 (432)
476 PF10475 DUF2450: Protein of u 23.2 7.6E+02 0.016 24.7 10.8 25 620-644 131-155 (291)
477 PF12796 Ank_2: Ankyrin repeat 23.1 3.3E+02 0.0071 20.8 6.3 14 191-204 34-47 (89)
478 KOG4567 GTPase-activating prot 22.9 7.8E+02 0.017 24.7 10.1 43 535-577 264-306 (370)
479 COG2042 Uncharacterized conser 22.6 4.5E+02 0.0097 23.4 7.0 61 687-747 115-176 (179)
480 KOG2908 26S proteasome regulat 22.5 6.9E+02 0.015 25.4 9.1 75 587-661 78-166 (380)
481 PF11838 ERAP1_C: ERAP1-like C 22.3 8.1E+02 0.018 24.7 20.0 79 566-644 147-229 (324)
482 PRK09462 fur ferric uptake reg 22.3 3.5E+02 0.0077 23.6 6.8 59 136-195 8-67 (148)
483 PF08311 Mad3_BUB1_I: Mad3/BUB 21.8 5E+02 0.011 22.0 8.6 43 634-676 81-124 (126)
484 PF11768 DUF3312: Protein of u 21.7 6.7E+02 0.014 27.4 9.5 56 386-441 412-472 (545)
485 PLN03192 Voltage-dependent pot 21.5 7E+02 0.015 29.6 11.1 114 288-410 562-680 (823)
486 KOG0551 Hsp90 co-chaperone CNS 21.4 2.1E+02 0.0046 28.7 5.5 101 654-754 84-188 (390)
487 COG5108 RPO41 Mitochondrial DN 21.4 3.8E+02 0.0082 29.8 7.7 78 519-596 33-115 (1117)
488 PF10255 Paf67: RNA polymerase 21.1 2.1E+02 0.0045 30.0 5.8 62 652-713 123-190 (404)
489 KOG3824 Huntingtin interacting 21.0 67 0.0014 31.5 2.0 33 729-761 126-158 (472)
490 cd07153 Fur_like Ferric uptake 21.0 2.1E+02 0.0045 23.6 4.9 45 217-261 6-50 (116)
491 KOG1498 26S proteasome regulat 21.0 9.6E+02 0.021 25.0 15.5 86 621-713 136-238 (439)
492 PF01475 FUR: Ferric uptake re 20.7 1.4E+02 0.0031 24.9 3.9 46 114-159 11-56 (120)
493 PF03745 DUF309: Domain of unk 20.3 1.6E+02 0.0036 21.1 3.5 46 56-101 11-61 (62)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.1e-100 Score=879.77 Aligned_cols=683 Identities=29% Similarity=0.495 Sum_probs=670.7
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHH
Q 036290 107 ERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSV 186 (796)
Q Consensus 107 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 186 (796)
.++..++|.++++|++.|++++|..+|++|.+.|+.|+..+|..++++|.+.+.++.|.+++..+.+.|..++..+++++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHH
Q 036290 187 LNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGR 266 (796)
Q Consensus 187 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 266 (796)
+.+|+++|+++.|.++|++|++||+.+||++|.+|++.|++++|+++|++|...|+.||..||+.+|++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC
Q 036290 267 QIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN 346 (796)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~ 346 (796)
+++..+.+.|+.||..++|+||++|+++|+++.|.++|++|..+|+.+||++|.+|++.|++++|+++|++|...|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 036290 347 HVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFN 426 (796)
Q Consensus 347 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 426 (796)
..||+.+|.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|..||.++||++|.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHH
Q 036290 427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFS 506 (796)
Q Consensus 427 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 506 (796)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhH
Q 036290 507 NGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYV 586 (796)
Q Consensus 507 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 586 (796)
++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.+|.+|++.|+.+.+.+++..+.+.|+.++..+
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 999999999999999999999999999999999986 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 036290 587 ASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGL 666 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 666 (796)
+++|+++|+++|++++|.++|+++ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 999999999999999999999554 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 667 VDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLL 746 (796)
Q Consensus 667 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 746 (796)
+++|.++|+.|.+++|+.|+..+|+.++++|.+.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.|+.+.++++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999977899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceEEecC--------------hhhHHhCCCccCCCccEEEeCCeeeeeeeee
Q 036290 747 LLLPKNDAAHVLLSK--------------RKRQREGNLLDHEGVCNVNDGIKTVDLKLEL 792 (796)
Q Consensus 747 ~~~p~~~~~~~~l~~--------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 792 (796)
+++|+++..|++|+| |+.|++.|++|.||+|||++++++..|..+.
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d 744 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD 744 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCC
Confidence 999999999999998 9999999999999999999999988886654
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.9e-92 Score=810.80 Aligned_cols=647 Identities=25% Similarity=0.432 Sum_probs=630.2
Q ss_pred CCCCCChhhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHH
Q 036290 38 SFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIV 117 (796)
Q Consensus 38 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 117 (796)
.+.+|+..+|..++++|...+.+..|.++|+.+.+.|..+++.++|+|+.+|+++|+++.|.++|++|++||+++||.||
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChh
Q 036290 118 SAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVA 197 (796)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 197 (796)
++|++.|++++|+.+|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..++++||.+|+++|+++
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcC
Q 036290 198 AAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEV 277 (796)
Q Consensus 198 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 277 (796)
+|.++|++|+++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.+.+++..+.+.|+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 036290 278 ECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQC 357 (796)
Q Consensus 278 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~ 357 (796)
.||..+||+||.+|+++|++++|.++|++|..||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 036290 358 GKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFC 437 (796)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 437 (796)
++.|+++.|.++++.+.+.|+.|+..+|++|+++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|+.+|+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhH
Q 036290 438 NIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASW 517 (796)
Q Consensus 438 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 517 (796)
+|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+|
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~ 557 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSW 557 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhH
Confidence 9986 5999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHh
Q 036290 518 GAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVI-KLGFNTEVYVASAVIDAYAK 596 (796)
Q Consensus 518 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~ 596 (796)
|++|.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|. +.|+.|+..+|+.++++|++
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999 68999999999999999999
Q ss_pred cCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 036290 597 CGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFK 675 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~ 675 (796)
.|++++|.++++++--.||..+|++|+.+|..+|+.+.+....+++.+ +.| +...|..+.+.|+..|+|++|.++.+
T Consensus 638 ~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 638 AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999996665679999999999999999999999999999988 678 55667777899999999999999999
Q ss_pred HhHhhcCCCCCchH
Q 036290 676 SMDSQYGMQPSPDC 689 (796)
Q Consensus 676 ~~~~~~~~~p~~~~ 689 (796)
.|.+. |+++++.+
T Consensus 716 ~M~~~-g~~k~~g~ 728 (857)
T PLN03077 716 TMREN-GLTVDPGC 728 (857)
T ss_pred HHHHc-CCCCCCCc
Confidence 99977 99888643
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-69 Score=610.34 Aligned_cols=481 Identities=23% Similarity=0.447 Sum_probs=469.9
Q ss_pred CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcC-CCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290 310 KDVISWNTLFGGFSENKNPGQTASLFHKFILSG-SRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSL 388 (796)
Q Consensus 310 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 388 (796)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 477799999999999999999999999998865 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHH
Q 036290 389 IYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVG 468 (796)
Q Consensus 389 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 468 (796)
+.+|++.|++++|.++|++|.+||.++||+++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..+..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 036290 469 QIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD 548 (796)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 548 (796)
+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHh
Q 036290 549 EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH 628 (796)
Q Consensus 549 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 628 (796)
..||+.++.+|++.|+++.|.+++..|.+.|+.|+..++++|+++|+++|++++|.++| +.+..+|..+||+||.+|++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf-~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF-DRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH-HhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 66677999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHH
Q 036290 629 HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKH 708 (796)
Q Consensus 629 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 708 (796)
.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC--------------hhhHHhCCCccCC
Q 036290 709 VIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK--------------RKRQREGNLLDHE 774 (796)
Q Consensus 709 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--------------~~~~~~~~~~~~~ 774 (796)
++++|+..|+..+|++|+.+|..+|+.+.|+.+++++++.+|++...|+.|++ ++.|++.|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred CccEEEeCCeeeeeeee
Q 036290 775 GVCNVNDGIKTVDLKLE 791 (796)
Q Consensus 775 ~~s~~~~~~~~~~~~~~ 791 (796)
|+|||++++++..|-.+
T Consensus 564 g~s~i~~~~~~~~f~~~ 580 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSG 580 (697)
T ss_pred CeeEEEECCeEEEEccC
Confidence 99999999998877554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-68 Score=600.20 Aligned_cols=531 Identities=14% Similarity=0.182 Sum_probs=415.0
Q ss_pred CCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcc-----hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHH
Q 036290 76 TNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLV-----SWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGS 150 (796)
Q Consensus 76 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 150 (796)
.++...|..++..|+++|++++|+++|++|++++.. +++.++.+|.+.|..++|..+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 344556666666666666666666666666554433 334455556666666666666666642 66666666
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccC----CCCceeHHHHHHHHHhCCC
Q 036290 151 VMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSIS----SDDVGCWNAMIGGYAHCGY 226 (796)
Q Consensus 151 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 226 (796)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|+++.|.++|++|. .||..+|++||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 666666666666666666666666666666666666666666666666666666665 3667777777777778888
Q ss_pred chHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHH--hcCCCChHHHHHHHHhhhcCCCHHHHHHHH
Q 036290 227 GFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIR--SEVECSISIVNALIDMYIKSSGMDYAFKVF 304 (796)
Q Consensus 227 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 304 (796)
+++|+++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888876 568888888888888888899998899988
Q ss_pred hhcCC----CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCC
Q 036290 305 ERMAD----KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLD 380 (796)
Q Consensus 305 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 380 (796)
+.|.+ |+..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88875 46689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC----CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHH
Q 036290 381 EENVTSSLIYMFCRCGAVEMAHSVFDNVS----YKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVE 456 (796)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 456 (796)
+..+|++||.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|+++|++|...|+.||..||+.+|.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 58999999999999999999999999999999999999999999999
Q ss_pred HhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 036290 457 TCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTI 536 (796)
Q Consensus 457 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 536 (796)
+|++.|+++.|.++++.|.+.|+.||..+|++++..+.+ ++++|.++.+.+.. |+. .......+..+.|+.+
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHHHHHH
Confidence 999999999999999999999999999999999876432 34444433222211 100 0011112234568888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCCh
Q 036290 537 FHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDV 616 (796)
Q Consensus 537 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 616 (796)
|++|.+.|+.||..||+.+|.+++..+..+.+..+++.|...+.. ++.
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~--------------------------------~~~ 882 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS--------------------------------QKQ 882 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC--------------------------------cch
Confidence 888888888888888888886666666666655555555444433 345
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA 652 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 652 (796)
.+|+++|+++.+. .++|..++++|...|+.|+..
T Consensus 883 ~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 883 SNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 5666666666322 368999999999999999875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.9e-67 Score=588.07 Aligned_cols=536 Identities=13% Similarity=0.117 Sum_probs=403.7
Q ss_pred CCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcC-CCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHH
Q 036290 142 MPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRI-EKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGG 220 (796)
Q Consensus 142 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 220 (796)
.++...|..++..|++.|+++.|.++|++|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|..||..+|+.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34555666666666666666677777776666663 45555666666666666666666666666666666666666666
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHH
Q 036290 221 YAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYA 300 (796)
Q Consensus 221 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 300 (796)
|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn--------------- 511 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG--------------- 511 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH---------------
Confidence 66666666666666666666666666666666666666666666666666666666555555555
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHH--hCC
Q 036290 301 FKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALH--CGF 378 (796)
Q Consensus 301 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~ 378 (796)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+
T Consensus 512 ----------------aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 512 ----------------ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred ----------------HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 45555555555555666666666666666666666666666666666666666666654 456
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC----CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHH
Q 036290 379 LDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY----KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYV 454 (796)
Q Consensus 379 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 454 (796)
.||..+|+++|.+|++.|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL 655 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 66666666666666666666666666666653 45567777777777778888888888888888888888888888
Q ss_pred HHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCC----CCCHhhHHHHHHHHHHcCCh
Q 036290 455 VETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAE----RLDMASWGAMMSALVHQGHN 530 (796)
Q Consensus 455 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~ 530 (796)
|.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|.++|+.|. .||..+||.+|.+|++.|++
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888888888888888888888888888889999999999999999988888885 48999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036290 531 HEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQS 610 (796)
Q Consensus 531 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 610 (796)
++|.++|++|...|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+.++.++. +++++|.++.+..
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v 813 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPV 813 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999997643 2455555544111
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH
Q 036290 611 FNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCY 690 (796)
Q Consensus 611 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 690 (796)
. .|+. .......+..+.|..+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|
T Consensus 814 ~------~f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y 885 (1060)
T PLN03218 814 V------SFDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNL 885 (1060)
T ss_pred h------hhhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhh
Confidence 1 1110 0111122345679999999999999999999999998888899999999999888755 788889999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC---CCCCCHH
Q 036290 691 GCLVDMLSRNGYLEDAKHVIEIM---PFQPSPT 720 (796)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~ 720 (796)
++|++++.+. .++|..++++| |+.|+..
T Consensus 886 ~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 886 STLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999998432 46899999999 6777753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-67 Score=591.88 Aligned_cols=475 Identities=20% Similarity=0.328 Sum_probs=460.6
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhH
Q 036290 107 ERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNG-FMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCS 185 (796)
Q Consensus 107 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 185 (796)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4677899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHH
Q 036290 186 VLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIG 265 (796)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 265 (796)
|+.+|+++|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCC
Q 036290 266 RQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRP 345 (796)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p 345 (796)
.+++..+.+.|+.||..++++||++|+++|++++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 036290 346 NHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCF 425 (796)
Q Consensus 346 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 425 (796)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHH-hCCCCCchhHhHHHHHHHhcCCcchHHH
Q 036290 426 NCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIK-TGFSSCGYICSSLIKSYVNFGQLDNSFE 504 (796)
Q Consensus 426 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 504 (796)
.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHhcCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 036290 505 FSNGAE-RLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNT 582 (796)
Q Consensus 505 ~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 582 (796)
++++|. .|+..+|++++.+|...|+++.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+.|+..
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 999986 48999999999999999999999999999864 4554 6799999999999999999999999999999864
Q ss_pred c
Q 036290 583 E 583 (796)
Q Consensus 583 ~ 583 (796)
.
T Consensus 562 ~ 562 (697)
T PLN03081 562 H 562 (697)
T ss_pred C
Confidence 3
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-36 Score=361.60 Aligned_cols=702 Identities=13% Similarity=0.000 Sum_probs=444.2
Q ss_pred hhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC---CCcchHHHHHHHHH
Q 036290 45 IFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE---RNLVSWTLIVSAAI 121 (796)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~ 121 (796)
..+..+...+...+++..|...++.+.+... .+...+..+...+...|++++|.++++++.. ++...|..+...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL 204 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4444455555666667777777766655432 2345566666666666777777766665432 23445666666666
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhh-----------------
Q 036290 122 QNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGC----------------- 184 (796)
Q Consensus 122 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----------------- 184 (796)
..|++++|...|++..+.. +.+..++..+...+...|+.+.|...++.+.+..... .....
T Consensus 205 ~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~ 282 (899)
T TIGR02917 205 SLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS-PLAHYLKALVDFQKKNYEDARE 282 (899)
T ss_pred hcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCHHHHHH
Confidence 6666666666666665543 2334455555555666666666666666665544322 11111
Q ss_pred -----------------HHHHHHHccCChhHHHHHhhccCC---CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 036290 185 -----------------SVLNFYAKLGDVAAAERVFYSISS---DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITM 244 (796)
Q Consensus 185 -----------------~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 244 (796)
.+...+...|++++|...|+...+ .+...+..+...+.+.|++++|...++.+.+.. +.
T Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 361 (899)
T TIGR02917 283 TLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PD 361 (899)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 222233344444444444444322 122334444555555566666666655554432 23
Q ss_pred CHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCC---CcchHHHHHHH
Q 036290 245 DKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADK---DVISWNTLFGG 321 (796)
Q Consensus 245 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 321 (796)
+...+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|+.++|...|+...+. +...+..++..
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence 44455555555556666666666666555443 223444555555555666666666666555431 22344455566
Q ss_pred HHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 036290 322 FSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMA 401 (796)
Q Consensus 322 ~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 401 (796)
+.+.|++++|.++++.+... .+++..++..+...+...|++++|.+.|..+.+.. +.+...+..+...+...|++++|
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 66666666666666666543 23345566666777777777777777777766543 33445566667777777777777
Q ss_pred HHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhC
Q 036290 402 HSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTG 478 (796)
Q Consensus 402 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 478 (796)
...|+.+.. .+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|+++.|..+++.+.+..
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 777776643 345566777777777777777777777776543 3344556667777777777777777777776544
Q ss_pred CCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 036290 479 FSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTI 555 (796)
Q Consensus 479 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l 555 (796)
+.+...+..+..+|...|++++|...|+.+.+ .+...+..+...+.+.|++++|...++++.+.. +.+..++..+
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 55667777777777777888877777776643 345567777777777788888888877776542 3446677777
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHH
Q 036290 556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSE 634 (796)
Q Consensus 556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 634 (796)
...+...|+++.|.++++.+.+.+.. +...+..+...+...|++++|.+.++..+.. |+..++..++..+.+.|++++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHH
Confidence 77777778888888887777766533 5566677777777888888888888665543 455666677777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036290 635 AMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM- 713 (796)
Q Consensus 635 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 713 (796)
|.+.++++.+.. +.+...+..+...|...|++++|...|+++... .++++.++..++..+...|+ .+|+++++++
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 888888877732 225666777777777888888888888887733 12336777778888888888 7788887776
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 714 PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 714 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
...| ++.++..+...+...|++++|...++++++.+|.++.++..++.
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 3344 44566777777788888888888888888888887777666543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-36 Score=358.70 Aligned_cols=687 Identities=12% Similarity=0.015 Sum_probs=546.2
Q ss_pred hhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC---CCcchHHHHHHHHH
Q 036290 45 IFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE---RNLVSWTLIVSAAI 121 (796)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~ 121 (796)
..+..+...+...+++..|..+++.+.+.. +++...+..+...+.+.|+++.|...|++... .+..+|..+...+.
T Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 238 (899)
T TIGR02917 160 YAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILI 238 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 345555555556666666666666655432 23444555555555666666666666655422 23334445555555
Q ss_pred hcCCchHHHHHHHHHHHCCC--------------------------------CCCc-ccHHHHHHHHhccCChhHHHHHH
Q 036290 122 QNGEFDMGLKMYVDMKTNGF--------------------------------MPNE-FAVGSVMKVCVSMGASEFGYSIH 168 (796)
Q Consensus 122 ~~~~~~~a~~~~~~m~~~~~--------------------------------~p~~-~t~~~ll~~~~~~~~~~~a~~~~ 168 (796)
..|++++|...++++.+... .|+. ..+..+...+...|+.+.|...+
T Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 318 (899)
T TIGR02917 239 EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYL 318 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554443221 1221 12222334455677777777777
Q ss_pred HHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCC---CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 036290 169 CFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISS---DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMD 245 (796)
Q Consensus 169 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 245 (796)
+.+.+..+ .+...+..+...+.+.|++++|...++.+.+ .+...++.+...+.+.|++++|.++|+++.+.. +.+
T Consensus 319 ~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 396 (899)
T TIGR02917 319 NQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PEN 396 (899)
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 77776543 3566777888899999999999999998764 355678889999999999999999999998753 235
Q ss_pred HhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHH
Q 036290 246 KYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGF 322 (796)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 322 (796)
...+..+...+...|++++|...+..+.+.... .......++..+.+.|++++|..+++.+.. ++...|+.+...+
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY 475 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 566777777888999999999999999877633 334556778889999999999999999865 3667899999999
Q ss_pred HhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 036290 323 SENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAH 402 (796)
Q Consensus 323 ~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 402 (796)
...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+.+.|+.++|.
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998753 2234566777888899999999999999998765 456788899999999999999999
Q ss_pred HHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCC
Q 036290 403 SVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGF 479 (796)
Q Consensus 403 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 479 (796)
..|+++.. .+...+..++..+...|++++|..+++++... .+.+..+|..+...+...|+++.|...++.+.+..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 631 (899)
T TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ- 631 (899)
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 99998854 35667888999999999999999999999875 35567889999999999999999999999998876
Q ss_pred CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290 480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL 556 (796)
Q Consensus 480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 556 (796)
+.+...+..+...+...|++++|...++++.+ .+..++..++..+...|++++|.++++.+.+.+ +++...+..+.
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 710 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEG 710 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHH
Confidence 56778889999999999999999999988765 357789999999999999999999999998875 56777888888
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290 557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE 634 (796)
Q Consensus 557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 634 (796)
..+...|+++.|.+.++.+...+.. ..++..+..++.+.|++++|.+.+++.+.. .+...+..+...|...|++++
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999887644 467778999999999999999999776654 478889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 635 AMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 635 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
|.++|+++.+.. +++...+..+...+...|+ ++|+.+++++. ...|+ +..+..+..++...|++++|.+.++++
T Consensus 789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL---KLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH---hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999853 3377789999999999999 88999999998 34565 677888999999999999999999999
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 714 -PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 714 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
...| +..++..+..++.+.|+.++|+++++++++
T Consensus 864 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 864 VNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 3344 778999999999999999999999999874
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6e-24 Score=252.33 Aligned_cols=650 Identities=11% Similarity=0.000 Sum_probs=392.2
Q ss_pred hhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC--CCcchH---------
Q 036290 45 IFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE--RNLVSW--------- 113 (796)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~--------- 113 (796)
..+....+.+-..++...|.+.++++.... +.|+.++..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 346667788888889999999999886542 33677888899999999999999999998754 433221
Q ss_pred --------HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhh
Q 036290 114 --------TLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEF-AVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGC 184 (796)
Q Consensus 114 --------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 184 (796)
..+.+.+.+.|++++|+..|+++.+.+ +|+.. ............|+.++|...++.+.+..+. +...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 233345778899999999999987653 33322 1111122223458888999999988887633 566777
Q ss_pred HHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh-hHHHHHHhhccCCCch
Q 036290 185 SVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKY-TFINALQGCSLVADFD 263 (796)
Q Consensus 185 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~ 263 (796)
.+...+...|+.++|+..|+++...... +...+...++.+...+..+... .+...+..+-......
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 8888888889999999988877542211 0111111222222222222211 1222222222223344
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCCccHHHHHHHHHHH
Q 036290 264 IGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD--K-DVISWNTLFGGFSENKNPGQTASLFHKFIL 340 (796)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 340 (796)
.+...+....+....|+... ...-..+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred HHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555443333333221 2234456677888888888887654 3 566777888888888888888888888776
Q ss_pred cCCCCCc-chHHH------------HHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036290 341 SGSRPNH-VTFSI------------LLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDN 407 (796)
Q Consensus 341 ~g~~p~~-~t~~~------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 407 (796)
....... ..+.. .-..+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|++.|++
T Consensus 332 ~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 332 LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4321111 11111 1223456677777777777766653 23445555666777777777777777766
Q ss_pred CCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcc--------cHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Q 036290 408 VSY--K-NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEV--------NGCTFFYVVETCCRSENQQMVGQIHGAIIK 476 (796)
Q Consensus 408 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 476 (796)
..+ | +...+..+...+. .++.++|+.+++.+....... ....+......+...|++++|.+.++...+
T Consensus 411 aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 653 2 3334444555443 345666666665543221000 001122233334444555555555555544
Q ss_pred hCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036290 477 TGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILG 553 (796)
Q Consensus 477 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~ 553 (796)
.. |.++..+..+...|.+.|++++|...++.+.+ | +...+..+...+...++.++|+..++.+......++...+.
T Consensus 490 ~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 490 LD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 43 23334444444445555555555444444322 1 22222222223334444444444444432211111100000
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChH
Q 036290 554 TILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVS 633 (796)
Q Consensus 554 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 633 (796)
.. .....+..+...+...|+.++|.++++ . ..++...+..+...+.+.|+++
T Consensus 569 -------------------~~-------l~~~~~l~~a~~l~~~G~~~eA~~~l~-~-~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 569 -------------------QR-------LQSDQVLETANRLRDSGKEAEAEALLR-Q-QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred -------------------HH-------HhhhHHHHHHHHHHHCCCHHHHHHHHH-h-CCCCchHHHHHHHHHHHcCCHH
Confidence 00 001123345677888999999999994 2 2235566778888899999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHH
Q 036290 634 EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIE 711 (796)
Q Consensus 634 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 711 (796)
+|++.|++..+ ..| +...+..+...+...|++++|++.++.+. ...|+ ...+..+..++...|++++|.++++
T Consensus 621 ~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 621 AARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLP---ATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999998 567 66778888999999999999999999877 45665 6667778889999999999999999
Q ss_pred hC-CCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 712 IM-PFQP-------SPTVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 712 ~~-~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
++ ...| +...+..+...+...|++++|++.+++++.
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87 2222 224566677888999999999999999985
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.2e-22 Score=239.02 Aligned_cols=605 Identities=9% Similarity=0.016 Sum_probs=406.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChh------------
Q 036290 115 LIVSAAIQNGEFDMGLKMYVDMKTNGFMP-NEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPF------------ 181 (796)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------ 181 (796)
..++.+...++.+.|.+.++++... .| |+..+..+...+.+.|+.++|.+.++.+.+..+.....
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 3456677889999999999998864 34 45567777888889999999999999998887543221
Q ss_pred ---HhhHHHHHHHccCChhHHHHHhhccCCCCceeHHH---HH-HHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036290 182 ---VGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNA---MI-GGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQ 254 (796)
Q Consensus 182 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 254 (796)
....+...+.+.|++++|.+.|+...+.+...... .. ......|+.++|++.|+++.+.. +-+......+-.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 01222335666677777777776655422111110 11 11123466777777777766543 223444555555
Q ss_pred hhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCCcc
Q 036290 255 GCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD-----KDVISWNTLFGGFSENKNPG 329 (796)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~ 329 (796)
.+...|+.++|.+.++.+.+..... . ..+...++.+.. .....+...+..+-......
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~-~----------------~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGR-D----------------AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCch-H----------------HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 5666667777777666664432100 0 000001111000 01112222222222223344
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 330 QTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS 409 (796)
Q Consensus 330 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 409 (796)
.|...+..+......|+... ...-..+...|++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++..
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555655544322333221 122344566788888888888887753 3466777888888888888888888887765
Q ss_pred C--CCh---hhHHH------------HHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHH
Q 036290 410 Y--KNI---TTWNE------------LLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHG 472 (796)
Q Consensus 410 ~--~~~---~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 472 (796)
+ |+. ..|.. ....+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|.+.++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 221 11221 2345678899999999999988853 2345566677788888999999999999
Q ss_pred HHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC------------HhhHHHHHHHHHHcCChhHHHHHHHHH
Q 036290 473 AIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD------------MASWGAMMSALVHQGHNHEAVTIFHSL 540 (796)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m 540 (796)
.+.+.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|++++|++.|++.
T Consensus 410 ~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 410 QALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 998875 455666777777774 457889988888765421 123455667788899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC---Ch-
Q 036290 541 VEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN---DV- 616 (796)
Q Consensus 541 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~- 616 (796)
.+.. +-+...+..+...+.+.|++++|...++.+.+.... +...+..+...+...++.++|...++...... +.
T Consensus 488 l~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 488 LALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 8763 234566777888899999999999999998875543 44445555566778899999999994433221 11
Q ss_pred --------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-c
Q 036290 617 --------IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-P 687 (796)
Q Consensus 617 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~ 687 (796)
..+..+...+...|+.++|.++++. .+++...+..+...+.+.|++++|+..|+++. ...|+ +
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al---~~~P~~~ 637 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL---TREPGNA 637 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH
Confidence 1223456778899999999999872 23466677788889999999999999999998 44666 7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 688 DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
..+..++.+|...|++++|.+.++.. ...|+ ..++..+..++...|++++|.++++++++..|+++.
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 88899999999999999999999988 44554 466777888899999999999999999998877654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=3.4e-21 Score=217.64 Aligned_cols=263 Identities=12% Similarity=-0.017 Sum_probs=206.1
Q ss_pred CchhHhHHHHHHHhcCCcchHHHHHhcCCC--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036290 482 CGYICSSLIKSYVNFGQLDNSFEFSNGAER--LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSC 559 (796)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 559 (796)
+...+..+..++.. ++.++|...+.+... |+......+...+...|++++|...|+++... .|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 56777778888776 788888887666554 44333223344446889999999999987554 45555566677788
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHH
Q 036290 560 AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEI 638 (796)
Q Consensus 560 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 638 (796)
...|+.+.|...++...+.... ....+..+.......|++++|...+++.+.. |+...|..+...+.+.|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8899999999999988876533 3333333444445669999999999777764 6788889999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036290 639 FDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF 715 (796)
Q Consensus 639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 715 (796)
+++..+ ..| +...+..+..++...|++++|+..+++.. ...|+ +..+..+..++...|++++|...+++. ..
T Consensus 632 l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL---~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 632 LRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH---KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999998 667 55567777788899999999999999988 45676 788889999999999999999999988 66
Q ss_pred CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290 716 QPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 716 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
.|+. .+.........+..++..|.+.+++.+..+|+..
T Consensus 707 ~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 707 IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 7765 5666777778888899999999999999999877
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=6.8e-21 Score=215.22 Aligned_cols=667 Identities=11% Similarity=-0.015 Sum_probs=404.4
Q ss_pred hhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCc--hhhHHHHHHHH--ccCChhHHHHHhcccCC--C-CcchHHHHH
Q 036290 45 IFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDI--FLQNNLIAMYS--KCGYFGWGLRVFDEMAE--R-NLVSWTLIV 117 (796)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~--~~g~~~~A~~~~~~~~~--~-~~~~~~~ll 117 (796)
.+|..+|-+|.-..... +.++.....+.++.|=- .++..+..++. ..|++++|...|++..+ | +..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA 85 (987)
T PRK09782 7 IGWSGLLLTSLLSTSAL-ADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLA 85 (987)
T ss_pred cCchHHHHHHHhccHhh-hhhcccccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35555555554433221 22222233333333311 23344444433 44999999999988643 3 356788889
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHH--------
Q 036290 118 SAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNF-------- 189 (796)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-------- 189 (796)
..|.+.|+.++|...+++..+. .|+...|..++..+ ++.+.|..+++++.+..+. +..++..+...
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~ 159 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALR 159 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhh
Confidence 9999999999999999998875 45555555555333 8888888999998887643 33444444443
Q ss_pred HHccCChhHHHHHhhccCCCC--ceeHH-HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhcc-CCCchHH
Q 036290 190 YAKLGDVAAAERVFYSISSDD--VGCWN-AMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSL-VADFDIG 265 (796)
Q Consensus 190 ~~~~g~~~~A~~~~~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a 265 (796)
|.+.++..+++. .....++ ..... .+...|.+.|++++|+++++.+.+.+.. +..-...+-.++.. .++ +.+
T Consensus 160 y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 160 LAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHH
Confidence 777666666666 3333333 33233 3377888888888888888888887643 33334444445555 345 555
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCCcc-HHHHHHHHHH
Q 036290 266 RQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD-----KDVISWNTLFGGFSENKNPG-QTASLFHKFI 339 (796)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~-~a~~l~~~m~ 339 (796)
..++.. .+..++.+..++...|.+.|+.++|.++++++.. |+..+|--+ +.+.+... .|..-|.+
T Consensus 236 ~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~-- 306 (987)
T PRK09782 236 LALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV-- 306 (987)
T ss_pred HHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh--
Confidence 555332 3335667777777777777887777777777653 222233222 33333332 11111111
Q ss_pred HcCCCCCcc-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcCChHHHHHHHHhCCCC---Ch
Q 036290 340 LSGSRPNHV-TFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFC--RCGAVEMAHSVFDNVSYK---NI 413 (796)
Q Consensus 340 ~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~---~~ 413 (796)
...++.. ....++..+.+.++++.+.++.. +.|.... ..++... ..+...++...+..|-+. +.
T Consensus 307 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 376 (987)
T PRK09782 307 --QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANL 376 (987)
T ss_pred --hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCH
Confidence 0011110 11122444455555554443321 2232222 1222211 123444444444444322 23
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhc-C-CcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290 414 TTWNELLSGYCFNCCDADVLKTFCNIWES-G-VEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK 491 (796)
Q Consensus 414 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (796)
...-.+.-...+.|+.++|.++|+..... + ..++.....-++..+.+.+.+....++..-. -+++...-..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~-- 450 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS----KPLPLAEQRQW-- 450 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc----cccccchhHHH--
Confidence 33333333344556666666666655541 1 2223333334455555444422222221111 00111111000
Q ss_pred HHHhcCCc---chHHHHHhcCCC---C--CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036290 492 SYVNFGQL---DNSFEFSNGAER---L--DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIG 563 (796)
Q Consensus 492 ~~~~~g~~---~~A~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 563 (796)
.|+. ..+...+..... . +...|..+..++.. +++++|...+.+.... .|+......+...+...|
T Consensus 451 ----~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 451 ----QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred ----HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 1111 112222222221 2 56677777777776 8999999988887765 577655444455567899
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036290 564 AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDK 641 (796)
Q Consensus 564 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 641 (796)
+++.|...++.+... .|+...+..+..++.+.|+.++|.+.+++.+.. | +...+..+.......|++++|...+++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999987554 334455667788899999999999999766654 2 323333333444556999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 036290 642 MKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-S 718 (796)
Q Consensus 642 m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 718 (796)
..+ ..|+...+..+...+.+.|++++|+..+++.. ...|+ ...+..+..++...|++++|++.+++. ...| +
T Consensus 602 AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 602 SLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 998 67888889999999999999999999999998 56787 778889999999999999999999988 5566 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 719 PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 719 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
...+..+..++...|++++|+..++++++++|++........+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~ 719 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPE 719 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhH
Confidence 5788999999999999999999999999999998888766665
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=2.2e-18 Score=172.01 Aligned_cols=370 Identities=15% Similarity=0.113 Sum_probs=272.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 036290 381 EENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVET 457 (796)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 457 (796)
-..+|..+...+-..|++++|...++.+.+ ..+..|.-+..++...|+.+.|.+.|.+..+ +.|+.....+-+.-
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 455667777777777777777777777664 2455777777777778888888777777666 55665544443333
Q ss_pred h-cccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC---HhhHHHHHHHHHHcCChhHH
Q 036290 458 C-CRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD---MASWGAMMSALVHQGHNHEA 533 (796)
Q Consensus 458 ~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A 533 (796)
+ ...|++++|...+.+.++.. +--...++.|...+...|+...|+.-|++....| ...|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 2 33567777777777766654 3334566777777778888888888887776643 34566777788888888888
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036290 534 VTIFHSLVEAGEKPDE-YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN 612 (796)
Q Consensus 534 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 612 (796)
+..+.+.... .|+. ..+..+...|...|..+.|...+++..+.... -...|+.|..++-..|++.+|.+.+.+.+.
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 8888776644 5543 45555656677788888888888877765443 345788888888888888888888876665
Q ss_pred C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-ch
Q 036290 613 S--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PD 688 (796)
Q Consensus 613 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~ 688 (796)
- ......+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..+++.. .+.|+ ..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 4 3556778888888888888888888888887 6674 4457788888888888888888888887 67888 78
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 689 CYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.|+.+...|-..|+.+.|++.+.+. ...|.. ...+.|...+...|+..+|++.++.+++++|+.+.++-.|.-
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 8888888888888888888888877 666754 567788888888888888888888888888888888765543
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.4e-16 Score=162.32 Aligned_cols=551 Identities=13% Similarity=0.067 Sum_probs=326.5
Q ss_pred hhHHHHHhhccCCCCceeHHHHH-HHH--HhCCCchHHHHHHHHHHH--CCCCCCHhhHHHHHHhhccCCCchHHHHHHH
Q 036290 196 VAAAERVFYSISSDDVGCWNAMI-GGY--AHCGYGFEALNVVSSMLF--EGITMDKYTFINALQGCSLVADFDIGRQIHG 270 (796)
Q Consensus 196 ~~~A~~~~~~~~~~~~~~~~~li-~~~--~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 270 (796)
++.|.+.|....+.+..-.-.|+ .++ -..|++..|+.+|+.... ...+||...- +-..+.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHH
Confidence 35565555555432222111222 222 234566667766666433 2233333211 1122235566666666666
Q ss_pred HHHHhcCCCChHHHHHHHHhhhc---CCCHHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 036290 271 LIIRSEVECSISIVNALIDMYIK---SSGMDYAFKVFERMA---DKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSR 344 (796)
Q Consensus 271 ~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~ 344 (796)
...+.+. .++..+-.|--.-.. ...+..+...+...- ..|++..+.|...+.-.|++..++.+...+...-..
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 6665542 122222221111111 122334444444332 236667777777777777777777777777654211
Q ss_pred --CCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHHhCCC--C-ChhhHH
Q 036290 345 --PNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEEN--VTSSLIYMFCRCGAVEMAHSVFDNVSY--K-NITTWN 417 (796)
Q Consensus 345 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 417 (796)
.-...|-.+-+++-..|++++|..+|-...+. .++.. .+--|..+|.+.|+++.+...|+.+.. | +..+.-
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 11234556667777777888877777665554 23332 234567778888888888888877754 3 334555
Q ss_pred HHHHHHHhcC----CchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHH----HHHHhCCCCCchhHhHH
Q 036290 418 ELLSGYCFNC----CDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHG----AIIKTGFSSCGYICSSL 489 (796)
Q Consensus 418 ~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l 489 (796)
++...|...+ ..+.|..++.+....- +.|...|..+-..+-..+- -.....+. .+...+.++.+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 5555555554 3455555555554431 3344455544444443332 22244443 33455666778888888
Q ss_pred HHHHHhcCCcchHHHHHhcCCC-------CCHh------hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-HHHH
Q 036290 490 IKSYVNFGQLDNSFEFSNGAER-------LDMA------SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYI-LGTI 555 (796)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t-~~~l 555 (796)
...+...|+++.|...|+.... +|.. +--.+...+-..++++.|.+.|..+... .|+-+. |.-+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 8888888888888887776543 2221 1112334444557888888888888765 455433 2222
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH----hccCCCCChhHHHHHHHHHH----
Q 036290 556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAF----DQSFNSNDVIVYNTLIMAYA---- 627 (796)
Q Consensus 556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~li~~~~---- 627 (796)
.-.....++...|...++......-. ++..++.+...+.+...+.-|.+-| .+....+|..+.-+|.+.|.
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 21222335667777777766663322 3444555566777777777776644 22223345555555555443
Q ss_pred --------hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHH
Q 036290 628 --------HHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLS 698 (796)
Q Consensus 628 --------~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 698 (796)
..+..++|+++|.+.+. ..| |...-+.+.-.++..|++.+|..+|.++.... .-...+|-.+.++|.
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYV 691 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHH
Confidence 23457788888888887 566 77777777778888999999999999888552 223556778899999
Q ss_pred hcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 699 RNGYLEDAKHVIEIM----PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 699 ~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
.+|++..|+++|+.. ....+..+...|..++...|.+.+|.+.+..+....|.++.....++
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 999999999998876 23446678888889988999999999999999999998888554443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=3.2e-17 Score=163.84 Aligned_cols=433 Identities=13% Similarity=0.084 Sum_probs=309.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccC
Q 036290 285 NALIDMYIKSSGMDYAFKVFERMADKDV---ISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLL 361 (796)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 361 (796)
..|..-..+.|++.+|++.....-+.|. ...-.+-..+.+..+.+....--....+. ...-..+|..+-..+...|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 3444445566777777766655543211 11111112333334444333222221111 1223456666666666677
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CChhhHHHHH-HHHHhcCCchHHHHHHHH
Q 036290 362 DLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY--KNITTWNELL-SGYCFNCCDADVLKTFCN 438 (796)
Q Consensus 362 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~a~~~~~~ 438 (796)
+++.|+.+++.+.+.. +.....|..+..++...|+.+.|...|.+..+ |+.....+-+ ..+-..|+.++|...|.+
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 7777777777766643 23455666677777777777777777766654 4333332222 233346777777777766
Q ss_pred HHhcCCccc-HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCH
Q 036290 439 IWESGVEVN-GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDM 514 (796)
Q Consensus 439 m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 514 (796)
..+. .|. ...|+.+-..+-..|+...|..-|++.++.. |--...|-.|...|...+.++.|...+.+... ...
T Consensus 210 Ai~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 210 AIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 6553 332 3345556566666777777777777776654 33466788888888888999998888776543 356
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290 515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA 593 (796)
Q Consensus 515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 593 (796)
..+..+...|-..|..+-|+..+++..+. +|+ +..|+.+..++-..|++.+|.+.+......... .....+.|...
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni 363 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNI 363 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 67888888888999999999999998765 555 468999999999999999999999998887655 56677889999
Q ss_pred HHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKG 670 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A 670 (796)
|...|.+++|..+|...+.- | -....+.|...|.+.|++++|+..|++... ++|+. ..|+.+-..|-..|+++.|
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999777665 3 456788999999999999999999999998 89954 5788999999999999999
Q ss_pred HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHH
Q 036290 671 CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCR 730 (796)
Q Consensus 671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~ 730 (796)
.+.+.+.. .+.|. .+..+.|..+|-..|++.+|+.-+++. +++||. ..|-.++.+..
T Consensus 442 ~q~y~rAI---~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 442 IQCYTRAI---QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHH---hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 99999998 78898 889999999999999999999999988 788886 46666666643
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.2e-15 Score=146.21 Aligned_cols=444 Identities=11% Similarity=0.084 Sum_probs=296.5
Q ss_pred ceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchH--H-HHHHHHHHHhcCCCChHHHHHH
Q 036290 211 VGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDI--G-RQIHGLIIRSEVECSISIVNAL 287 (796)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--a-~~~~~~~~~~~~~~~~~~~~~l 287 (796)
+.+-|.|+. +...|..+++.-+|+.|.+.|+..+...-..+++..+-.+...- + .+.|-.|.+.|-. +..+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~s---- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSS---- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccc----
Confidence 445566655 45678899999999999999999888877777776544333222 1 2223333333322 2222
Q ss_pred HHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHH
Q 036290 288 IDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGL 367 (796)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 367 (796)
.+.|++.+ -+|+ ...+...+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+..-. ...
T Consensus 190 ----WK~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 190 ----WKSGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred ----cccccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 34555544 3444 444566799999999999999999999999999998999999999999876543 338
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCccc
Q 036290 368 QLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVN 447 (796)
Q Consensus 368 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 447 (796)
++..+|....+.||..|+|+++.+..+.|+++.|.+. |++++.+|++-|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcc
Confidence 8999999999999999999999999999999987754 5666777777777777
Q ss_pred HHHHHHHHHHhcccCcHH-HHHHHHHHHHH----hCCC----CCchhHhHHHHHHHhcCCcchHHHHHhcCCC-------
Q 036290 448 GCTFFYVVETCCRSENQQ-MVGQIHGAIIK----TGFS----SCGYICSSLIKSYVNFGQLDNSFEFSNGAER------- 511 (796)
Q Consensus 448 ~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 511 (796)
..+|..+|.-.++.++.. .+..++.++.. ..+. .+...|..-+..+.+..+.+-|.++-.-...
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 777777777666665542 23333333322 2222 2344455566666666666666554332221
Q ss_pred -C---CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHH
Q 036290 512 -L---DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVA 587 (796)
Q Consensus 512 -~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 587 (796)
+ ...-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++....+.++-..++|..++..|........
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 1 223466777888888999999999999988888899999999999999999999999999999988765444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036290 588 SAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH--HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG 665 (796)
Q Consensus 588 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 665 (796)
..+...+++. ...|+...-..+-.++++ ..-.+.....-.+|.+..+.| ...+..+-.+.+.|
T Consensus 472 eeil~~L~~~-------------k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G 536 (625)
T KOG4422|consen 472 EEILMLLARD-------------KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAG 536 (625)
T ss_pred HHHHHHHhcC-------------CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcc
Confidence 3333333322 222322211112111111 111223333445566544444 34555556678889
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHH---HHHHHHHhcCChHHHHHHHHhC
Q 036290 666 LVDKGCLLFKSMDSQYGMQPSPDCYG---CLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..++|.+++....+.+.-.|.....+ -+++.-.+..+...|...++-|
T Consensus 537 ~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 537 RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999988866655555555555 4445556677788888887776
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.6e-15 Score=157.62 Aligned_cols=545 Identities=12% Similarity=0.086 Sum_probs=305.2
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHh--ccCChhHHHHHHHHHHHhcC--CCChhHhhHHHHHHHccCChhHHHHH
Q 036290 127 DMGLKMYVDMKTNGFMPNEFAVGSVMKVCV--SMGASEFGYSIHCFALKIRI--EKNPFVGCSVLNFYAKLGDVAAAERV 202 (796)
Q Consensus 127 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~ 202 (796)
+.|...|....+.. |+. ....+.+||. ..+++..|..+|..+....+ .+|+.+ .+-..+.+.|+.+.|...
T Consensus 147 ~~A~a~F~~Vl~~s--p~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS--PDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHhhC--Ccc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence 56666666665542 221 2223334443 44566666666666555443 333333 233455566666666666
Q ss_pred hhccCCCCceeHHHHHHHHH------hCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhc
Q 036290 203 FYSISSDDVGCWNAMIGGYA------HCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSE 276 (796)
Q Consensus 203 ~~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (796)
|....+-|+.+-++++.... ....+..++.++...-.. .
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-----------------------------------n 266 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-----------------------------------N 266 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-----------------------------------c
Confidence 66666555544444432111 112233333333333221 1
Q ss_pred CCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCC------cchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcch-
Q 036290 277 VECSISIVNALIDMYIKSSGMDYAFKVFERMADKD------VISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVT- 349 (796)
Q Consensus 277 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t- 349 (796)
.-++.+.+.|.+.|.-.|++..++.+...+...+ ..+|--+.++|-..|++++|...|-+-.+. .||..+
T Consensus 267 -~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l 343 (1018)
T KOG2002|consen 267 -NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVL 343 (1018)
T ss_pred -CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccc
Confidence 1233344444444444455555444444433211 123444555555555666655555444332 333322
Q ss_pred -HHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----ChHHHHHHHHhCCCC---ChhhHHHHHH
Q 036290 350 -FSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCG----AVEMAHSVFDNVSYK---NITTWNELLS 421 (796)
Q Consensus 350 -~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~ 421 (796)
+--+-..+.+.|+++.+...|+...+.. +.+..+...|-..|...+ ..+.|..++.+...+ |...|-.+..
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 2234444555556666655555555442 333444444444454443 344455555544432 3334444444
Q ss_pred HHHhcCCchHHHHHHHHH----HhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh---CCCCCc------hhHhH
Q 036290 422 GYCFNCCDADVLKTFCNI----WESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT---GFSSCG------YICSS 488 (796)
Q Consensus 422 ~~~~~g~~~~a~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ 488 (796)
.+-+..-+ .++..|... ...+-.+.....|.+-......|+++.|...+...... ...++. .+--.
T Consensus 423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 44333322 224444332 23344455566666666666667777776666665543 111222 12233
Q ss_pred HHHHHHhcCCcchHHHHHhcCCCCCHh---hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCch
Q 036290 489 LIKSYVNFGQLDNSFEFSNGAERLDMA---SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAY 565 (796)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 565 (796)
+..++-..++.+.|.+.+..+....+. .|--+.......++..+|...+.+..... .-++..+..+-..+.....+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 455555666777777777776652222 22222222223366777777777765432 33333333344455566666
Q ss_pred HHHHHHHHHHHHh-CCCCchhHHHHHHHHHHh------------cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcC
Q 036290 566 QRTKSIHPFVIKL-GFNTEVYVASAVIDAYAK------------CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHG 630 (796)
Q Consensus 566 ~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g 630 (796)
..|.+-|....+. ...+|..+.-+|.+.|.. .+..+.|++.|.+.+.. .|...-|-+.-.++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 6666655554442 222566666666665542 24577889998777765 37777788888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 036290 631 LVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVI 710 (796)
Q Consensus 631 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 710 (796)
++.+|..+|.+.++... -...+|..+.++|...|+|..|+++|+...+.+.-.-+......|.+++.+.|++.+|.+.+
T Consensus 661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999654 24557888999999999999999999999988776666899999999999999999999988
Q ss_pred HhC-CCCCC
Q 036290 711 EIM-PFQPS 718 (796)
Q Consensus 711 ~~~-~~~p~ 718 (796)
... ...|.
T Consensus 740 l~a~~~~p~ 748 (1018)
T KOG2002|consen 740 LKARHLAPS 748 (1018)
T ss_pred HHHHHhCCc
Confidence 776 34443
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=9.8e-16 Score=146.72 Aligned_cols=330 Identities=12% Similarity=0.091 Sum_probs=244.2
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc--CChhH-HHHHHHHHHHhcCCCChhHhhHH
Q 036290 110 LVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSM--GASEF-GYSIHCFALKIRIEKNPFVGCSV 186 (796)
Q Consensus 110 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--~~~~~-a~~~~~~~~~~g~~~~~~~~~~l 186 (796)
+.+-|.|+.- ...|...++--+|+.|+..|+..++..-..|++.-+-. .++.. -++.|-.|.+.|-.. ..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 3456666654 55788899999999999999888887766666544432 22222 234444444444322 2222
Q ss_pred HHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHH
Q 036290 187 LNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGR 266 (796)
Q Consensus 187 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 266 (796)
+.|++.+ ++-+.......+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+.+-.. .+
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cH
Confidence 3354433 44444445677999999999999999999999999999989999999999998865433 38
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC
Q 036290 267 QIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN 346 (796)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~ 346 (796)
++..+|....+.||..|+|+++....+.|+++.|.+ .|++++.+|++-|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcc
Confidence 899999999999999999999999888888877654 35778889999999999
Q ss_pred cchHHHHHHHhcccCChHH-HHHHHHHHHH----hCCC---C-chhHHHHHHHHHHhcCChHHHHHHHHhCCC-------
Q 036290 347 HVTFSILLRQCGKLLDLDL-GLQLQCLALH----CGFL---D-EENVTSSLIYMFCRCGAVEMAHSVFDNVSY------- 410 (796)
Q Consensus 347 ~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~---~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------- 410 (796)
..+|..+|..+++.++..+ +..++.+++. ..+. | |...+..-+..|.+..+.+-|.++-.-...
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 9999999998888887744 4444444443 1222 2 444556777777788888888777654432
Q ss_pred -CC---hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCc
Q 036290 411 -KN---ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCG 483 (796)
Q Consensus 411 -~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 483 (796)
++ ..-|..+....|+....+.-+.+|+.|.-+-+-|+..+...++++..-.+.++...+++.+++..|.....
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 11 22466677788888889999999999998888899999999999999999999999999999888854433
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=2.1e-17 Score=175.33 Aligned_cols=291 Identities=15% Similarity=0.131 Sum_probs=202.6
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcch
Q 036290 422 GYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDN 501 (796)
Q Consensus 422 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 501 (796)
.+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+.+.+..++..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------------- 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------------- 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------------
Confidence 4455677777777777776642 1223345555555555566666666555554432111000
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290 502 SFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN 581 (796)
Q Consensus 502 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 581 (796)
....+..+...|.+.|++++|..+|+++.+.. +++..++..+...+...|++++|.+.++.+.+.+..
T Consensus 106 -----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 106 -----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred -----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 01234555666666666666666666665542 344556666666666777777777777666665433
Q ss_pred Cc----hhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHH
Q 036290 582 TE----VYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS--QAT 653 (796)
Q Consensus 582 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t 653 (796)
+. ...+..+...+.+.|++++|.+.+++.+.. .+...+..+...+.+.|++++|.++++++.+. .|+ ..+
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 251 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEV 251 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHH
Confidence 22 123455677778888999998888666543 25567788889999999999999999999884 453 456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRI- 731 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~- 731 (796)
+..+..+|...|++++|...++++. ...|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~---~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRAL---EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 7888999999999999999999998 34688777788999999999999999999877 667999899988887664
Q ss_pred --cCChHHHHHHHHHHHc
Q 036290 732 --HGNKELGEWASEKLLL 747 (796)
Q Consensus 732 --~g~~~~A~~~~~~~~~ 747 (796)
.|+..++..+++++++
T Consensus 329 ~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCCccchhHHHHHHHHHH
Confidence 5688888888887775
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.81 E-value=1.4e-15 Score=158.51 Aligned_cols=661 Identities=13% Similarity=0.028 Sum_probs=368.5
Q ss_pred CCCCCChhhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHH
Q 036290 38 SFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIV 117 (796)
Q Consensus 38 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 117 (796)
+|.-|+.+||.+++..||..|+.+.|. +|..|.-..+..+..+++.++.+....++.+.+. +|...+|+.|+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLL 90 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHH
Confidence 688999999999999999999998888 9999988888888899999999999999887775 78888999999
Q ss_pred HHHHhcCCchH---HHHHHHHHHH----CCCCCCcccHHHHHHHHhccCChhH--------HHHHHHHHHHhc-CCCChh
Q 036290 118 SAAIQNGEFDM---GLKMYVDMKT----NGFMPNEFAVGSVMKVCVSMGASEF--------GYSIHCFALKIR-IEKNPF 181 (796)
Q Consensus 118 ~~~~~~~~~~~---a~~~~~~m~~----~~~~p~~~t~~~ll~~~~~~~~~~~--------a~~~~~~~~~~g-~~~~~~ 181 (796)
.+|.++|+... ..+.++.... .|+.--..-|-..+.+|.. -..+. -+.+.+...+.+ ..|...
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~-~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPH-SLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcc-cchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 99999998754 2232222222 2332222222222222211 11111 112222233333 112111
Q ss_pred HhhHHHHHHHcc-----CChhHHHHHhhccCC-CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 036290 182 VGCSVLNFYAKL-----GDVAAAERVFYSISS-DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQG 255 (796)
Q Consensus 182 ~~~~li~~~~~~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 255 (796)
-++...- +.+. ..+++-........+ ++..+|..++.+-.-+|+.+.|..++.+|++.|++.+..-|..+|-+
T Consensus 170 ~~~p~~v-fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 170 WNAPFQV-FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred ccchHHH-HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 1111111 1221 223333333333333 78889999999999999999999999999999999999888888766
Q ss_pred hccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHH-
Q 036290 256 CSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASL- 334 (796)
Q Consensus 256 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l- 334 (796)
.++...+..++.-|...|+.|+..|+...+-.+..+|....+... . +....+++-+..-+-.| ..|.+.
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavrsaa~rg--~~a~k~l 318 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVRSAACRG--LLANKRL 318 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHHHHHhcc--cHhHHHH
Confidence 788888899999999999999999998888777776653222221 1 22222222222222223 222222
Q ss_pred -----------HHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhC--CCC-chhHHHHHHHHHHhcCChHH
Q 036290 335 -----------FHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCG--FLD-EENVTSSLIYMFCRCGAVEM 400 (796)
Q Consensus 335 -----------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~-~~~~~~~ll~~~~~~g~~~~ 400 (796)
+.+..-.|+.-....|.... -....|.-+...++-..+..-- ..+ ++..|..++.-|
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy-------- 389 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY-------- 389 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH--------
Confidence 22222223322222222222 2223555566666655554321 111 222333333333
Q ss_pred HHHHHHhCCCCChh-hHH--HH------------HHHHHhcCCchHHHHHHHHHHhc----CC-------cccHHHHHHH
Q 036290 401 AHSVFDNVSYKNIT-TWN--EL------------LSGYCFNCCDADVLKTFCNIWES----GV-------EVNGCTFFYV 454 (796)
Q Consensus 401 A~~~~~~~~~~~~~-~~~--~l------------i~~~~~~g~~~~a~~~~~~m~~~----g~-------~p~~~t~~~l 454 (796)
|.+...+... .++ .. +.-++..-+...+++-+..+... .. .|-...-+.+
T Consensus 390 ----Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 390 ----FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred ----HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 3333222111 111 00 00011111112222222111111 01 1122334556
Q ss_pred HHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCH------hhHHHHHHHHHHcC
Q 036290 455 VETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDM------ASWGAMMSALVHQG 528 (796)
Q Consensus 455 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~ 528 (796)
+..|++..+...+...-+.....-++ ..|..||+.+....+.+.|..+.++...++. .-+..+.+.+.+.+
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 66777766666666444444333322 6789999999999999999999998887544 45778888999999
Q ss_pred ChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036290 529 HNHEAVTIFHSLVEAGEK-P-DEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMA 606 (796)
Q Consensus 529 ~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 606 (796)
...++..++.++.+.-.. | ...++-.+++.....|+.+...++++.+...|+.-+ ..++....+.++...|.++
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea 618 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEA 618 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhc
Confidence 999999999999764322 2 245677788888899999999999999888877642 3344455566777777666
Q ss_pred HhccCCC--C---ChhHHHHHHH------------------HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036290 607 FDQSFNS--N---DVIVYNTLIM------------------AYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH 663 (796)
Q Consensus 607 ~~~~~~~--~---~~~~~~~li~------------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 663 (796)
++..-.. + +...+..++. .|.+.|+...|.++.+. .|+. +-+.- ..|..
T Consensus 619 ~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et---pG~r----~r~~R-Dr~~d 690 (1088)
T KOG4318|consen 619 PEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET---PGVR----CRNGR-DRDTD 690 (1088)
T ss_pred chHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc---Cccc----ccCCC-ccccc
Confidence 6221111 1 1122222211 12333333333222211 0100 00000 11112
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHH
Q 036290 664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHG---NKELGEW 740 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~ 740 (796)
.|...--....+.+... .....|+..|.+.|+++.|..++.++++.|+..+...|+..+.+.. |+.++..
T Consensus 691 e~e~~~lEll~elt~~l-------g~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~ 763 (1088)
T KOG4318|consen 691 EGEIVPLELLLELTHEL-------GKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQA 763 (1088)
T ss_pred cCccccHHHHHHHHhHh-------HHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHH
Confidence 22222222222222211 1122366677777777777777777776677666666666655442 4555666
Q ss_pred HHHHHHccCCCCC
Q 036290 741 ASEKLLLLLPKND 753 (796)
Q Consensus 741 ~~~~~~~~~p~~~ 753 (796)
..+++-+..|..+
T Consensus 764 e~ekas~~~~~f~ 776 (1088)
T KOG4318|consen 764 ETEKASELRTLFP 776 (1088)
T ss_pred HHHHHHhcccccc
Confidence 6666655554433
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.3e-16 Score=177.13 Aligned_cols=331 Identities=11% Similarity=0.024 Sum_probs=247.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHH
Q 036290 415 TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYV 494 (796)
Q Consensus 415 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 494 (796)
....++..+.+.|++++|+.+++........+.. ....+..++...|+++.|...++.+.+.. |.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445667778888888888888888776443333 33344455566888888888888888775 666777888888888
Q ss_pred hcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHH
Q 036290 495 NFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSI 571 (796)
Q Consensus 495 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 571 (796)
..|++++|...+++... .+...+..+...+...|++++|...++.+...... +...+.. +..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCHHHHHHH
Confidence 88999888888887765 34567778888888889999999888887655322 2222322 3346778889999888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH----HHHHHHHHHHC
Q 036290 572 HPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE----AMEIFDKMKLA 645 (796)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 645 (796)
++.+.+....++......+..++...|++++|...+++.+.. .+...+..+...+...|++++ |...+++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~- 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ- 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence 888777654444455556677788889999998888766654 366777888888888898885 7888888888
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 036290 646 NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVY 722 (796)
Q Consensus 646 g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 722 (796)
..| +...+..+...+...|++++|...+++.. ...|+ ...+..+..++.+.|++++|.+.++++ ...|+...+
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al---~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL---ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 566 55677888888888999999999998887 34666 566777888888999999999988887 456665443
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 723 -RSLLSGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 723 -~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
..+..++...|+.++|...++++++.+|++..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 34566688889999999999999999888653
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.8e-15 Score=172.01 Aligned_cols=396 Identities=8% Similarity=-0.037 Sum_probs=266.8
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCch
Q 036290 354 LRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDA 430 (796)
Q Consensus 354 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 430 (796)
+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 333444555555555555554411 33344456666666666666666666666432 23445556666666777777
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCC
Q 036290 431 DVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAE 510 (796)
Q Consensus 431 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (796)
+|+..+++..+. .|+...+..+..++...|+.+.|...++.+.+.. |.+...+..+...+...+..+.|.+.++...
T Consensus 101 eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 777777776654 3322225555666666777777777777777665 4455566667777777788888888877666
Q ss_pred C-CCH------hhHHHHHHHHH-----HcCCh---hHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHHhccCchHHHH
Q 036290 511 R-LDM------ASWGAMMSALV-----HQGHN---HEAVTIFHSLVEA-GEKPDEY-ILG----TILNSCAAIGAYQRTK 569 (796)
Q Consensus 511 ~-~~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~ 569 (796)
. |+. ......+.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|+.+.|.
T Consensus 178 ~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 178 LTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5 111 01112222221 12233 6788888888754 2233322 111 1134456778999999
Q ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--C----hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290 570 SIHPFVIKLGFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN--D----VIVYNTLIMAYAHHGLVSEAMEIFDKM 642 (796)
Q Consensus 570 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m 642 (796)
..|+.+.+.+.. |+. ....+..+|...|++++|+..|++.+..+ + ......+..++...|++++|.++++++
T Consensus 258 ~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 258 SEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999887643 332 22335778999999999999997665542 1 234666777889999999999999999
Q ss_pred HHCC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHH
Q 036290 643 KLAN-----------LQPSQ---ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAK 707 (796)
Q Consensus 643 ~~~g-----------~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 707 (796)
.+.. -.|+. ..+..+...+...|++++|++.++++.. ..|+ ...+..++.++...|++++|+
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 8742 11231 2345566788899999999999999983 4565 788889999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290 708 HVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 708 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
+.+++. ...|+ ...+..++..+...|++++|+++++++++..|+++.+..
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999998 56676 456677777889999999999999999999999997643
No 23
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.80 E-value=2.1e-16 Score=164.53 Aligned_cols=616 Identities=11% Similarity=0.061 Sum_probs=374.2
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCC
Q 036290 130 LKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSD 209 (796)
Q Consensus 130 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 209 (796)
..++-.|...|+.||.+||..++..||..|+.+.|- +|..|.-...+.+..+++.++....+.|+.+.+. +|
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 467888899999999999999999999999999999 9999998888888999999999999999988776 67
Q ss_pred CceeHHHHHHHHHhCCCchHHHHHHHH-HH-------HCCCCCCHhhHHHHHHhhccC-CCchH------HHHHHHHHHH
Q 036290 210 DVGCWNAMIGGYAHCGYGFEALNVVSS-ML-------FEGITMDKYTFINALQGCSLV-ADFDI------GRQIHGLIIR 274 (796)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~~~~~ll~~~~~~-~~~~~------a~~~~~~~~~ 274 (796)
...+|+.|..+|.+.|+... ++..++ |. ..|+.....-|-..++.|-.. .+... -+.+++...+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999765 322222 22 234333333332233322211 11111 1122333333
Q ss_pred hc-CCC-ChHH--HHHHHHhhh-cCCCHHHHHHHHhhcCC-CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcc
Q 036290 275 SE-VEC-SISI--VNALIDMYI-KSSGMDYAFKVFERMAD-KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHV 348 (796)
Q Consensus 275 ~~-~~~-~~~~--~~~li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~ 348 (796)
.+ ..| .... ....+.-.. -...+++-..+.....+ ++..+|.+++..-..+|+.+.|..++.+|++.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 33 111 1100 000122222 22344555555555554 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcC-
Q 036290 349 TFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNC- 427 (796)
Q Consensus 349 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g- 427 (796)
-|..+|-+ .++...+..++..|.+.|+.|+..|+..-+..+..+|....+... . +....+++-+.+-+-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHHHHHhccc
Confidence 88888866 888888999999999999999999998887777775553322221 1 21112222222222222
Q ss_pred ---------CchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCC---CCchhHhHHHHHHHh
Q 036290 428 ---------CDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFS---SCGYICSSLIKSYVN 495 (796)
Q Consensus 428 ---------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~ 495 (796)
...-....+++..-.|+......|..... ....|.-+..+++...+..--.. .++..|..++.-|
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy-- 389 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY-- 389 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH--
Confidence 11112222222222343333333332222 22355556666666555432211 1222333333333
Q ss_pred cCCcchHHHHHhcCCCCCHh-hHH--------------HHHHHHHHcCChhHHHHHHHHHHH----cCCC-------CCH
Q 036290 496 FGQLDNSFEFSNGAERLDMA-SWG--------------AMMSALVHQGHNHEAVTIFHSLVE----AGEK-------PDE 549 (796)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~-~~~--------------~li~~~~~~~~~~~A~~~~~~m~~----~g~~-------p~~ 549 (796)
|.+...+... .|+ ..+.-+...-+...+++-+..+.. +... |-.
T Consensus 390 ----------Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 390 ----------FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred ----------HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 3333322111 111 011111111122222222222211 0111 112
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC------ChhHHHHHH
Q 036290 550 YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN------DVIVYNTLI 623 (796)
Q Consensus 550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~li 623 (796)
..-+.++..|++.-+..+++..-+.....-+. ..|..||+.++...+.+.|..+. +.+..+ |..-+..+.
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~-~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFV-DEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhch-hhhcccchhhhcccHhHHHHH
Confidence 23445666677766666666555544443332 67899999999999999999999 444443 556788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcC
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANL-QP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNG 701 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 701 (796)
+.+.+.+....+.++++++.+.-. .| ...++-.++......|+.+.-.++++-+..- |+.-+ ..++....+.+
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~et----gPl~~vhLrkd 610 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSET----GPLWMVHLRKD 610 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhhc----ccceEEEeecc
Confidence 999999999999999999987322 23 2445666777888889998888888777733 55542 44666778899
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHccCCCCCcceEEecC----hhhHHhCCCccC
Q 036290 702 YLEDAKHVIEIM--PFQPSPTVYRSLLSGCRIH--GNKELGEWASEKLLLLLPKNDAAHVLLSK----RKRQREGNLLDH 773 (796)
Q Consensus 702 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~----~~~~~~~~~~~~ 773 (796)
+...|.+..+.- ..+|.+.....+.....+. .+++.+..+...... |+-+.+ ++.....|+...
T Consensus 611 d~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~--------f~k~g~~~~a~di~etpG~r~r 682 (1088)
T KOG4318|consen 611 DQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQK--------FEKLGSCVDAGDITETPGVRCR 682 (1088)
T ss_pred chhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHH--------HHhcccccchhhccccCccccc
Confidence 999999888766 4667766666666555432 233333333222211 222222 777888999988
Q ss_pred CCccEEEeCCeeeeeeeee
Q 036290 774 EGVCNVNDGIKTVDLKLEL 792 (796)
Q Consensus 774 ~~~s~~~~~~~~~~~~~~~ 792 (796)
+++..-...|.+.|.+.+-
T Consensus 683 ~~RDr~~de~e~~~lEll~ 701 (1088)
T KOG4318|consen 683 NGRDRDTDEGEIVPLELLL 701 (1088)
T ss_pred CCCccccccCccccHHHHH
Confidence 9887777777777766543
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=4.9e-17 Score=172.57 Aligned_cols=298 Identities=13% Similarity=0.086 Sum_probs=138.1
Q ss_pred cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC-C------hhhHHHHHHHHHhcCCch
Q 036290 358 GKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYK-N------ITTWNELLSGYCFNCCDA 430 (796)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g~~~ 430 (796)
...|+++.|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+... + ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555542 223334455555555555555555555544321 1 123444444455555555
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCC
Q 036290 431 DVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAE 510 (796)
Q Consensus 431 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (796)
+|..+|+++.+. -+++..++..+...+...|++++|.+.++.+.+.+..+....
T Consensus 125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 555555554432 112233344444444444444444444444433321110000
Q ss_pred CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290 511 RLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV 590 (796)
Q Consensus 511 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 590 (796)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+.......+..+
T Consensus 179 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 179 --IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred --HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 00122334444455555555555555554432 122334444445555555555555555555544332223344455
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCC
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH---KGL 666 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~ 666 (796)
+.+|...|++++|.+.++..... |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCcc
Confidence 55555555555555555333321 3334445555555556666666666655555 34555555555544432 335
Q ss_pred HHHHHHHHHHhHhhcCCCCCch
Q 036290 667 VDKGCLLFKSMDSQYGMQPSPD 688 (796)
Q Consensus 667 ~~~A~~~~~~~~~~~~~~p~~~ 688 (796)
.+++..+++++.++ ++.|++.
T Consensus 334 ~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 334 AKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred chhHHHHHHHHHHH-HHhCCCC
Confidence 55566666655544 4455443
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=8.5e-15 Score=163.67 Aligned_cols=420 Identities=11% Similarity=-0.014 Sum_probs=289.4
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036290 314 SWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFC 393 (796)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 393 (796)
.+......+.+.|++++|+..|++... +.|+...|..+-.++.+.|++++|.+.+....+.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455667788889999999999998875 46777788888888888999999999988888763 335567777888888
Q ss_pred hcCChHHHHHHHHhCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcC--CcccHHHHHHHHHHhcccCcHHHHH
Q 036290 394 RCGAVEMAHSVFDNVSYK---NITTWNELLSGYCFNCCDADVLKTFCNIWESG--VEVNGCTFFYVVETCCRSENQQMVG 468 (796)
Q Consensus 394 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~ 468 (796)
..|++++|...|...... +......++..+.. ..+........... ..|.............. ....
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRP----KPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC----Ccch
Confidence 999999988877554321 11111122221111 12222222222221 11222222122211110 0000
Q ss_pred HHHHHHHHhCCCCC-chhHhHHHHH---HHhcCCcchHHHHHhcCCC------CCHhhHHHHHHHHHHcCChhHHHHHHH
Q 036290 469 QIHGAIIKTGFSSC-GYICSSLIKS---YVNFGQLDNSFEFSNGAER------LDMASWGAMMSALVHQGHNHEAVTIFH 538 (796)
Q Consensus 469 ~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~ 538 (796)
.-+....+ ..+. ...+..+... ....+++++|.+.|+...+ .....|+.+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 10111000 0111 0111111111 1234678899998887654 234567788888889999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-C
Q 036290 539 SLVEAGEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-D 615 (796)
Q Consensus 539 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~ 615 (796)
+..+. .|+ ...|..+...+...|+++.|...++...+.... +...+..+...+...|++++|...|++.+.. | +
T Consensus 356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 98765 454 557778888889999999999999998887543 5778888999999999999999999777664 3 6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-hH----
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP-DC---- 689 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~---- 689 (796)
...+..+...+.+.|++++|+..+++..+ ..| +...++.+...+...|++++|+..|++.. .+.|+. ..
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~ 507 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNV 507 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccH
Confidence 77788888999999999999999999988 556 56778888899999999999999999987 344431 11
Q ss_pred ---HHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 690 ---YGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 690 ---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
++.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|...+++++++.+....
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 122222344469999999999986 556654 56888999999999999999999999998875443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=3e-14 Score=158.41 Aligned_cols=424 Identities=8% Similarity=0.050 Sum_probs=254.7
Q ss_pred hhcCCCHHHHHHHHhhcCCCCcc---hHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHH---HHHhcccCChH
Q 036290 291 YIKSSGMDYAFKVFERMADKDVI---SWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSIL---LRQCGKLLDLD 364 (796)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~ 364 (796)
..+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 34566666666666665542211 12255555556666666666666654 3322222222 22344445555
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 036290 365 LGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGV 444 (796)
Q Consensus 365 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 444 (796)
.|.++++.+.+.. +.+...+..++..+...++.++|++.++++...
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------------------------------- 165 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--------------------------------- 165 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---------------------------------
Confidence 5555555555442 222333444455555555555555555555432
Q ss_pred cccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhH----
Q 036290 445 EVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASW---- 517 (796)
Q Consensus 445 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~---- 517 (796)
.|+...+..++..+...++...|.+.++++.+.. |.+...+..++....+.|-...|.++...-+. +...-+
T Consensus 166 dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~ 244 (822)
T PRK14574 166 DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD 244 (822)
T ss_pred CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence 2332233222222222233323444444444443 34444555555555555555555555444332 000000
Q ss_pred --HHHHH-HH----HHcCC---hhHHHHHHHHHHHc-CCCCCH-HH----HHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290 518 --GAMMS-AL----VHQGH---NHEAVTIFHSLVEA-GEKPDE-YI----LGTILNSCAAIGAYQRTKSIHPFVIKLGFN 581 (796)
Q Consensus 518 --~~li~-~~----~~~~~---~~~A~~~~~~m~~~-g~~p~~-~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 581 (796)
..+++ +. ....+ .+.|+.-++.+... +-.|.. .- ..--+-++...++...+.+.++.+...+.+
T Consensus 245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 00010 00 01112 23455555555432 122322 12 223455777888999999999999988877
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------
Q 036290 582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN--------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANL------ 647 (796)
Q Consensus 582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------ 647 (796)
....+-..+.++|...+++++|..++++..... +......|.-++...+++++|..+++.+.+.-.
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 677788899999999999999999996554421 333357788899999999999999999987311
Q ss_pred -------CCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036290 648 -------QPSQAT-FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP 717 (796)
Q Consensus 648 -------~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 717 (796)
.||-.. +..++..+...|++.+|++.++++. ...|. ......+.+++...|++.+|.+.++.. ...|
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~---~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS---STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 123333 3345567888999999999999997 34554 888889999999999999999999776 4566
Q ss_pred CH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 718 SP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 718 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
+. .+....+.++...|++.+|..+.+.+++..|+++...
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 54 5667788888899999999999999999999998654
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=1.8e-14 Score=161.16 Aligned_cols=417 Identities=11% Similarity=0.020 Sum_probs=297.5
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-cchHHHHHHHhcc
Q 036290 283 IVNALIDMYIKSSGMDYAFKVFERMAD--KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN-HVTFSILLRQCGK 359 (796)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~ 359 (796)
.+...-..+.+.|+++.|+..|++... |+...|..+..+|.+.|++++|++.++...+. .|+ ...+..+-.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 355667788899999999999998764 67778889999999999999999999998865 454 4577778889999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 036290 360 LLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNI 439 (796)
Q Consensus 360 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 439 (796)
.|++++|..-+......+-..+.. ...++..+........+...++.-+ .+...+..+. .+...........-+.+-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVG-NYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHH-HHHHHccCCcchhhhhcc
Confidence 999999999887665543222222 2222222222222334444443322 2222333322 232222222222212111
Q ss_pred HhcCCcccH-HHHHHHH---HHhcccCcHHHHHHHHHHHHHhC-C-CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--
Q 036290 440 WESGVEVNG-CTFFYVV---ETCCRSENQQMVGQIHGAIIKTG-F-SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER-- 511 (796)
Q Consensus 440 ~~~g~~p~~-~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 511 (796)
.+ ..|+. ..+..+. .-....+++++|.+.++...+.+ . +.....+..+...+...|++++|...++...+
T Consensus 284 ~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 284 NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 11 11111 0011110 11133468899999999998875 2 33456788888999999999999999998765
Q ss_pred C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290 512 L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV 590 (796)
Q Consensus 512 ~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 590 (796)
| ....|..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.... +...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHH
Confidence 3 35578888889999999999999999987763 445678888888999999999999999999887654 56677788
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HH-------HHHHHHH
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-AT-------FVSVMSA 660 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t-------~~~ll~~ 660 (796)
..++.+.|++++|...+++.+.. | +...|+.+...+...|++++|.+.|++..+ +.|+. .+ ++.....
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHH
Confidence 99999999999999999776654 3 678899999999999999999999999988 44431 11 1112222
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 661 CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 661 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+...|++++|.+++++.. .+.|+ ...+..++.++.+.|++++|++.|++.
T Consensus 518 ~~~~~~~~eA~~~~~kAl---~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKAL---IIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344699999999999987 45676 557888999999999999999999987
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=5e-15 Score=164.66 Aligned_cols=320 Identities=12% Similarity=0.074 Sum_probs=195.2
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-ChhhHHHHHHHHHhc
Q 036290 350 FSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY--K-NITTWNELLSGYCFN 426 (796)
Q Consensus 350 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 426 (796)
...++..+.+.|+++.|..++.........+ ......++.+....|++++|...|+++.. | +...+..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4445555666666666666666665543222 22233333444445666666666555542 2 333445555555555
Q ss_pred CCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHH
Q 036290 427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFS 506 (796)
Q Consensus 427 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 506 (796)
|++++|...+++... .. +.+...+..+...+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~-----------------------------------l~-P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 124 KQYATVADLAEQAWL-----------------------------------AF-SGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred CCHHHHHHHHHHHHH-----------------------------------hC-CCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 555555555555544 32 233444445555555555555555555
Q ss_pred hcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290 507 NGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE 583 (796)
Q Consensus 507 ~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 583 (796)
+.+.. | +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++...+.... +
T Consensus 168 ~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~ 245 (656)
T PRK15174 168 RTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-G 245 (656)
T ss_pred HHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 43321 2 22222222 235666777777777777655432333444444556667777777777777777765533 5
Q ss_pred hhHHHHHHHHHHhcCCHHH----HHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 036290 584 VYVASAVIDAYAKCGDIKG----ARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVS 656 (796)
Q Consensus 584 ~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 656 (796)
...+..+..+|...|++++ |...+++.+.. .+...+..+...+...|++++|...+++..+ ..| +...+..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 5666677788888888775 67777655543 3666778888888888888888888888887 456 4455666
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPSP-DCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+..++...|++++|...++++.. ..|+. ..+..+..++...|+.++|.+.+++.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77788888888888888888873 35553 33444567788888888888888876
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=1.1e-13 Score=157.66 Aligned_cols=416 Identities=8% Similarity=-0.041 Sum_probs=200.6
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCC
Q 036290 251 NALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKN 327 (796)
Q Consensus 251 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 327 (796)
-.+......|+.++|.+++....... +.+...+..+...+...|++++|..++++..+ .+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33444444455555554444443311 22333345555555555555555555555322 233445555555566666
Q ss_pred ccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036290 328 PGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDN 407 (796)
Q Consensus 328 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 407 (796)
.++|+..+++..+. .|+...+..+...+...|+.++|...++.+.+.. +.+...+..+...+...+..+.|...++.
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 66666666665544 2222114444445555555555555555555542 22333334455555556666666666655
Q ss_pred CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHh-----cccCcH---HHHHHHHHHHHHh-C
Q 036290 408 VSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETC-----CRSENQ---QMVGQIHGAIIKT-G 478 (796)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~ 478 (796)
... +.. +..- ...+ .....+... ...+++ +.|.+.++.+.+. .
T Consensus 176 ~~~-~p~-~~~~------------------------l~~~--~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 176 ANL-TPA-EKRD------------------------LEAD--AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred CCC-CHH-HHHH------------------------HHHH--HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 543 111 0000 0000 000011111 111122 4455555555443 1
Q ss_pred CCCCch-hHh-H---HHHHHHhcCCcchHHHHHhcCCCCC---H-hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-
Q 036290 479 FSSCGY-ICS-S---LIKSYVNFGQLDNSFEFSNGAERLD---M-ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD- 548 (796)
Q Consensus 479 ~~~~~~-~~~-~---l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~- 548 (796)
..|+.. .+. . .+..+...|++++|...|+.+.+.+ + ..-..+...|...|++++|...|+++.+.. |.
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~ 305 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETI 305 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCC
Confidence 111111 100 0 0112233345555555554444311 0 011112344555555555555555544321 11
Q ss_pred ----HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCC---hhHHHH
Q 036290 549 ----EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSND---VIVYNT 621 (796)
Q Consensus 549 ----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 621 (796)
......+..++...|++++|.+.++.+...... ....+. .....|+ ...+..
T Consensus 306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~-~~~~~~--------------------~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP-FLRLYG--------------------SPTSIPNDDWLQGQSL 364 (765)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc-eEeecC--------------------CCCCCCCchHHHHHHH
Confidence 122233333444444444444444444432111 000000 0000112 123455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHh
Q 036290 622 LIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSR 699 (796)
Q Consensus 622 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 699 (796)
+...+...|++++|+++++++.. ..| +...+..+...+...|++++|++.++++. ...|+ ...+..++..+.+
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al---~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAE---VLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhCCCChHHHHHHHHHHHH
Confidence 66677788888888888888877 456 55667777778888888888888888887 45677 5666677777888
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036290 700 NGYLEDAKHVIEIM-PFQPSPTVYRSLL 726 (796)
Q Consensus 700 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 726 (796)
.|++++|..+++++ ...|+...-..+-
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 88888888888887 4556554433333
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.3e-12 Score=145.48 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM 696 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 696 (796)
+..++..+...|+..+|++.++++.. ..| |......+...+...|.+.+|++.++.+. .+.|+ .......+..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHH
Confidence 33456667888899999999999877 556 77778888888888899999999987776 55777 5666678888
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHH
Q 036290 697 LSRNGYLEDAKHVIEIM-PFQPSPTV 721 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~-~~~p~~~~ 721 (796)
+...|++.+|..+.+.. ...|+...
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 88889999998888776 34555443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=1.9e-11 Score=129.24 Aligned_cols=674 Identities=11% Similarity=0.035 Sum_probs=388.6
Q ss_pred hhhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhccc---CCCCcchHHHHHHHH
Q 036290 44 PIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEM---AERNLVSWTLIVSAA 120 (796)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~ 120 (796)
............-.|++..|.+++.++++.. +.+...|..|...|-..|+.+++...+-.. ...|-.-|-.+-.-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3344444444455599999999999999875 445678999999999999999998876543 234556788888888
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHH----HHHHccCCh
Q 036290 121 IQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVL----NFYAKLGDV 196 (796)
Q Consensus 121 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~ 196 (796)
.+.|++.+|.-.|.+.++.. +++...+-.=...|-+.|+...|..-+.++....++.|..-.-.++ +.|...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 89999999999999998764 3333333444567778999999999999998887755555444444 445556777
Q ss_pred hHHHHHhhccCC--C---CceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHH
Q 036290 197 AAAERVFYSISS--D---DVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGL 271 (796)
Q Consensus 197 ~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 271 (796)
+.|.+.++.... . +...++.++..+.+...++.|......+......+|...+..-= .-..-...
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----------~~~~~~~~ 366 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----------RRREEPNA 366 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----------hccccccc
Confidence 888888876654 2 44568888899999999999999888887644444444331000 00000000
Q ss_pred HHH--hcCCCChHHHHHHHH-hhhcCCCHHHHHHHHhhcCC----CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 036290 272 IIR--SEVECSISIVNALID-MYIKSSGMDYAFKVFERMAD----KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSR 344 (796)
Q Consensus 272 ~~~--~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~ 344 (796)
... .++.++..+....+. ...+.+...+++.-|-.... -++..|--+..++.+.|++.+|+.+|..+.....-
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 000 012223333111111 11222333333322221111 13445556666666666666666666666555433
Q ss_pred CCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChh----------
Q 036290 345 PNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNIT---------- 414 (796)
Q Consensus 345 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---------- 414 (796)
-+...|-.+-.++-..|..++|.+.++...... +.+...-..|...+-+.|+.++|.+.++.+..||..
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 344455555566666666666666666665542 223444556777788888888888888887765522
Q ss_pred --hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHH
Q 036290 415 --TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKS 492 (796)
Q Consensus 415 --~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 492 (796)
.--.....+.+.|+.++=+.+...|..... ....+ + .+...+. .......+.+........++.+
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~------~~~~~--f---~~~~k~r--~~~~~~~~~~~~~~~~~~~~~~ 592 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTASTLVDDFL------KKRYI--F---PRNKKKR--RRAIAGTTSKRYSELLKQIIRA 592 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHh--c---chHHHHH--HHhhccccccccchhHHHHHHH
Confidence 222233455566666665555555544210 00000 0 0000000 0000000112222333333444
Q ss_pred HHhcCCcchHHHHHhcC--------CCC---CH-hhHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCH---HHHHHH
Q 036290 493 YVNFGQLDNSFEFSNGA--------ERL---DM-ASWGAMMSALVHQGHNHEAVTIFHSLVEAGE--KPDE---YILGTI 555 (796)
Q Consensus 493 ~~~~g~~~~A~~~~~~~--------~~~---~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~---~t~~~l 555 (796)
-.+.++.....+-...- ... +. ..+.-++.++++.+++++|+.+...+....+ .++. ..=...
T Consensus 593 ~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~ 672 (895)
T KOG2076|consen 593 REKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLG 672 (895)
T ss_pred HhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHH
Confidence 44443322222111111 111 11 1234567788899999999999888765432 2222 122345
Q ss_pred HHHHhccCchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C--ChhHHHHHHHHHHh
Q 036290 556 LNSCAAIGAYQRTKSIHPFVIKL-GFNT---EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N--DVIVYNTLIMAYAH 628 (796)
Q Consensus 556 l~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~li~~~~~ 628 (796)
+.++...+++..|...++.|... +... -...|+.....+.+.++-.--.+++...+.. + +..........+..
T Consensus 673 l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~ 752 (895)
T KOG2076|consen 673 LKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFV 752 (895)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhh
Confidence 56777889999999998888764 2221 2345555555555555544444444333332 2 23333333344566
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhc----------cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHH
Q 036290 629 HGLVSEAMEIFDKMKLANLQPSQATFVSVMS-ACSH----------KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDML 697 (796)
Q Consensus 629 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~----------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 697 (796)
.+.+..|+..+-+.-. ..||....+.++. ++.+ .-..-.+..++.+..+.....-...++..++++|
T Consensus 753 ~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRay 830 (895)
T KOG2076|consen 753 NASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAY 830 (895)
T ss_pred ccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 7888899988777766 5576555444332 1211 1124456666666653322222356667799999
Q ss_pred HhcCChHHHHHHHHhC-CCCC---------C----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290 698 SRNGYLEDAKHVIEIM-PFQP---------S----PTVYRSLLSGCRIHGNKELGEWASEKL 745 (796)
Q Consensus 698 ~~~g~~~~A~~~~~~~-~~~p---------~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 745 (796)
-..|-..-|.+++++. ++.| + ...-..|.-.|..+|+...|.+++++-
T Consensus 831 h~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 831 HQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 9999999999999988 3321 1 122234555688999999999998864
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=1.5e-10 Score=117.62 Aligned_cols=487 Identities=11% Similarity=0.037 Sum_probs=274.8
Q ss_pred cCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHH
Q 036290 258 LVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASL 334 (796)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l 334 (796)
...+.+.|.-++....+.- +.+...| -+|++..-++.|.++++...+ .+...|.+-...--.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444555555555442 2222323 334444556666666666554 2555565555555566666666665
Q ss_pred HHH----HHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 335 FHK----FILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLD--EENVTSSLIYMFCRCGAVEMAHSVFDNV 408 (796)
Q Consensus 335 ~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 408 (796)
+.+ +...|+..+...|..=...|-..|..-.+..+....+..|+.. -..++..-...|.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 543 3455666666666666666666666666666666666666544 2345666666666777777777666655
Q ss_pred CC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchh
Q 036290 409 SY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYI 485 (796)
Q Consensus 409 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 485 (796)
.+ .+...|......--..|..+....+|++.... ++-....|.......-..|++..|..++....+.. +.+..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence 43 24445655555555566666666666666653 22233334333444445566666666666666655 335566
Q ss_pred HhHHHHHHHhcCCcchHHHHHhcCCC--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 036290 486 CSSLIKSYVNFGQLDNSFEFSNGAER--LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAI 562 (796)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~ 562 (796)
+-+-+..-.....++.|..+|.+... +....|.--+...--.++.++|.+++++..+. -|+- ..|-.+-+.+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 66666666666666666666665543 44455554444444456666666666665543 3333 2333444445555
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 036290 563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN-SN-DVIVYNTLIMAYAHHGLVSEAMEIFD 640 (796)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 640 (796)
++.+.|.+.|..=.+. ++..+..|-.+.+.--+.|.+-.|..+++...- .| +...|-..|+.-.+.|+.+.|..+..
T Consensus 699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555544332221 222444555556666666666666666644322 22 55666666666666666666666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290 641 KMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP 719 (796)
Q Consensus 641 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 719 (796)
+..+. ++.+...|.--|....+.++-......++ .+.-|+.....+...+....+++.|.++|++. ...||.
T Consensus 778 kALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 778 KALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 55542 22244445555555555444333333332 23445566666667777777777777777666 444544
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 720 -TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 720 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.+|-.+...+..+|.-++-.+++.+...-+|.....|-..+.
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 566666666677777777777777777777766665544443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=4.7e-11 Score=126.27 Aligned_cols=590 Identities=11% Similarity=0.057 Sum_probs=314.3
Q ss_pred CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHh
Q 036290 124 GEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVF 203 (796)
Q Consensus 124 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 203 (796)
|+.++|..++.+.++.. +-+...|.+|-..+-..|+.+.+...+-.+.... +.|...|..+-......|.++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 66666666666666543 2344456666666666666555544433322222 224455666666666666666666666
Q ss_pred hccCCCCceeHHHH---HHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHH----HHhhccCCCchHHHHHHHHHHHhc
Q 036290 204 YSISSDDVGCWNAM---IGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINA----LQGCSLVADFDIGRQIHGLIIRSE 276 (796)
Q Consensus 204 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~ 276 (796)
.+..+.+..-|..+ +..|-+.|+...|.+.|.++.....+.|..-+..+ ++.+...++.+.|.+.++.....+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 66554333323322 34556667777777777766654332222222222 222333333344444444333311
Q ss_pred -CCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHc--------------
Q 036290 277 -VECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILS-------------- 341 (796)
Q Consensus 277 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-------------- 341 (796)
-..+... ++.++..+.+...++.+......+...
T Consensus 311 ~~~~~~ed-------------------------------~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 311 KDEASLED-------------------------------LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred cccccccH-------------------------------HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 1222333 444444444444444444444444331
Q ss_pred -------------CCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHH
Q 036290 342 -------------GSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGF--LDEENVTSSLIYMFCRCGAVEMAHSVFD 406 (796)
Q Consensus 342 -------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 406 (796)
++.++... ..+.-++.+....+....+.....+..+ .-+...|..+.++|...|++.+|..+|.
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred ccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11111111 1222334444555555555555555553 3355667777777777777777777777
Q ss_pred hCCC----CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHH-HHHHHHHHhcccCcHHHHHHHHHHHH------
Q 036290 407 NVSY----KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGC-TFFYVVETCCRSENQQMVGQIHGAII------ 475 (796)
Q Consensus 407 ~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~------ 475 (796)
.+.. .+...|-.+..+|...|..++|.+.|..... ..|+.. .-.++-..+-+.|+.++|.+.+..+.
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 7664 3555777777777777777777777777766 334332 23334445566777777777777643
Q ss_pred --HhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--------------------------CCHhhHHHHHHHHHHc
Q 036290 476 --KTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--------------------------LDMASWGAMMSALVHQ 527 (796)
Q Consensus 476 --~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~li~~~~~~ 527 (796)
..+.+|...........+...|+.++=..+-..|.. ........++.+-.+.
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~ 596 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKA 596 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhcc
Confidence 233455555555566667777776653322111111 0111122223333333
Q ss_pred CChhHHHHHH------HHHHHcCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchh----HHHHHHHHH
Q 036290 528 GHNHEAVTIF------HSLVEAGEKPDE--YILGTILNSCAAIGAYQRTKSIHPFVIKLG-FNTEVY----VASAVIDAY 594 (796)
Q Consensus 528 ~~~~~A~~~~------~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~li~~~ 594 (796)
++.....+-. .--...|+.-+. ..+.-++.++++.+.+++|..+...+.... +..+.. .-...+.+.
T Consensus 597 ~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s 676 (895)
T KOG2076|consen 597 TDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKAS 676 (895)
T ss_pred CchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHH
Confidence 3322111111 111122333332 234556778888899999988887776632 222222 234456666
Q ss_pred HhcCCHHHHHHHHhccCCC------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccC
Q 036290 595 AKCGDIKGARMAFDQSFNS------N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM--SACSHKG 665 (796)
Q Consensus 595 ~~~g~~~~A~~~~~~~~~~------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~g 665 (796)
+..+++..|...++.++.. + -...||.....+.+.++-.--.+.+..... ..|+......++ +-....+
T Consensus 677 ~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~ 754 (895)
T KOG2076|consen 677 LYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNA 754 (895)
T ss_pred HhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhcc
Confidence 7788898888888555543 1 334566666666666554333344333332 333332222222 2234567
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHH-HHHHHH----------hcCChHHHHHHHHhC-CC-CC--CHHHHHHHHHHHH
Q 036290 666 LVDKGCLLFKSMDSQYGMQPSPDCYGC-LVDMLS----------RNGYLEDAKHVIEIM-PF-QP--SPTVYRSLLSGCR 730 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~----------~~g~~~~A~~~~~~~-~~-~p--~~~~~~~l~~~~~ 730 (796)
.+..|+..+-++. ...|+....+. +.-++. |.-..-.+..++.+. .. .+ ...++..+..+|.
T Consensus 755 s~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh 831 (895)
T KOG2076|consen 755 SFKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYH 831 (895)
T ss_pred chHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 7888998877766 45677444442 332222 112344556666555 11 22 3467888999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCCc
Q 036290 731 IHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 731 ~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
..|=...|...|+++++..|.+..
T Consensus 832 ~~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 832 QIGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred HcccHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999876443
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=2.4e-10 Score=116.15 Aligned_cols=573 Identities=10% Similarity=0.030 Sum_probs=413.3
Q ss_pred cCChhHHHHHHHHHHHhcC-CCChhHhhHHHHHHHccCChhHHHHHhhccC---CCCceeHHHHHHHHHhCCCchHHHHH
Q 036290 158 MGASEFGYSIHCFALKIRI-EKNPFVGCSVLNFYAKLGDVAAAERVFYSIS---SDDVGCWNAMIGGYAHCGYGFEALNV 233 (796)
Q Consensus 158 ~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 233 (796)
.+|+..|+-++....+.++ .|...+.++.+. -..|.+..|..+...-- ..+...|-.-| +....+.|..+
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLE--EvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLE--EVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHH
Confidence 3567778888888877764 344444444333 23455666655543211 12222232211 22233334444
Q ss_pred HHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---C
Q 036290 234 VSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---K 310 (796)
Q Consensus 234 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 310 (796)
.-..... -|+.... -+.+.--..+...-..++...+++ ++.++..|.+.+. ....++|..++.+..+ .
T Consensus 338 vA~Avr~--~P~Sv~l--W~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp~ 408 (913)
T KOG0495|consen 338 VANAVRF--LPTSVRL--WLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCPQ 408 (913)
T ss_pred HHHHHHh--CCCChhh--hhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhccc
Confidence 4333321 2222211 122221122222233344444433 3445666655543 3455567777777654 2
Q ss_pred CcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHH----HHhCCCCchhHHH
Q 036290 311 DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLA----LHCGFLDEENVTS 386 (796)
Q Consensus 311 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~ 386 (796)
+...| .++++..-++.|..++++.++. ++-+...|.+.-..--..|+.+...++++.- ...|+..+..-|-
T Consensus 409 s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 44444 4566777788999999998875 6667778877777777888999988887764 4578888888888
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC------CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcc
Q 036290 387 SLIYMFCRCGAVEMAHSVFDNVSY------KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCR 460 (796)
Q Consensus 387 ~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 460 (796)
.=...+-+.|..-.+..+...... .--.+|+.-...|.+.+.++-|..+|....+. .+.+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 888888888888887777766542 22348999999999999999999999988874 34455667777776677
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHH
Q 036290 461 SENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIF 537 (796)
Q Consensus 461 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 537 (796)
.|..+....+++.+...- +-....+-.....+-..|+...|..++....+ .+...|-+-+.....+..++.|..+|
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 888999999999988874 55566677778888899999999999887765 35567888888889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-C
Q 036290 538 HSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-D 615 (796)
Q Consensus 538 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~ 615 (796)
.+.... .|+...|.--+..--..++.++|.+++++..+.- +.-...|..+.+.+.+.++.+.|.+.|....+. | .
T Consensus 642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 998764 7787777777776777889999999998877643 224567888889999999999999999777765 4 6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLV 694 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 694 (796)
+..|-.|.+.-.+.|+.-+|..++++.+-. .| +...|...|+.-.+.|..+.|..+..++.++ +..+...|..-|
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI 794 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAI 794 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHH
Confidence 778888888888999999999999999874 36 7788999999999999999999999988844 555578888888
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 695 DMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.+.-+.++-......+++. ..|+.+.-.+...+.....++.|+..|+++++.+|++..+|..+-.
T Consensus 795 ~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred HhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 8888888888888877776 4466677777888888899999999999999999999998876654
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=2.8e-11 Score=117.29 Aligned_cols=457 Identities=15% Similarity=0.116 Sum_probs=281.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHH-HHHhhccCCCchHHHHHHHHHHHhcCCCCh----HHHHHHHHhhh
Q 036290 218 IGGYAHCGYGFEALNVVSSMLFEGITMDKYTFIN-ALQGCSLVADFDIGRQIHGLIIRSEVECSI----SIVNALIDMYI 292 (796)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~ 292 (796)
..-|.-+....+|+..|+-..+..+-|+.-.+-. +-..+.+.+.+..|.+++...+..-...+. .+.+.+--.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3445555666777777777777666666543321 122244556666777777666554332222 23333444567
Q ss_pred cCCCHHHHHHHHhhcCC--CCcch-HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHH--------HHHHHhcccC
Q 036290 293 KSSGMDYAFKVFERMAD--KDVIS-WNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFS--------ILLRQCGKLL 361 (796)
Q Consensus 293 ~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~--------~ll~~~~~~~ 361 (796)
+.|.+++|+..|+...+ |+..+ +|..| .+..-|+.++..+.|.+|..--..||..-|. .++.-..+.
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n- 365 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN- 365 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh-
Confidence 78888888888877654 55443 44444 3444677788888888887654444444331 111111000
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChh-------------hH--------HHHH
Q 036290 362 DLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNIT-------------TW--------NELL 420 (796)
Q Consensus 362 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~--------~~li 420 (796)
..+..|.+.. ..+..-+ +-.+.+++.-+..|+-. .+ -.-.
T Consensus 366 ------d~lk~~ek~~-ka~aek~------------i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 366 ------DHLKNMEKEN-KADAEKA------------IITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred ------HHHHHHHHhh-hhhHHHH------------HHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 0111111111 0000000 00011111111111110 00 0112
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCcccHHHHH--HHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCC
Q 036290 421 SGYCFNCCDADVLKTFCNIWESGVEVNGCTFF--YVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQ 498 (796)
Q Consensus 421 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 498 (796)
..+.++|+++.|+++++-+....-+.-...-+ ..+.-+....++..|.+.-+..+... .-+......-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 35788999999999998887654333332222 23333333456777777666554432 1222222222233456789
Q ss_pred cchHHHHHhcCCCCCHhhHHHHHH---HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 036290 499 LDNSFEFSNGAERLDMASWGAMMS---ALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFV 575 (796)
Q Consensus 499 ~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 575 (796)
+++|.+.+++....|...-.++.. .+-..|+.++|++.|-++... +.-+......+.+.|....+...|.+++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999988877665444433 456789999999999887543 2445566667777788888888888877655
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290 576 IKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT 653 (796)
Q Consensus 576 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 653 (796)
... ++.|+.+...|.+.|-+.|+-..|.+.+-+...- | ++.+..-|...|....-+++++.+|++..- ++|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 432 4457888999999999999999998877454443 3 778888888889999999999999999877 8899999
Q ss_pred HHHHHHHH-hccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 036290 654 FVSVMSAC-SHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGY 702 (796)
Q Consensus 654 ~~~ll~~~-~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 702 (796)
|..++..| .+.|++++|.++++...+ .++-|..++..|++.+...|-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 99888665 578999999999999874 466778899999988877663
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.4e-10 Score=108.90 Aligned_cols=445 Identities=13% Similarity=0.091 Sum_probs=316.4
Q ss_pred CCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcc-hHHHHHHHhcccCChHHHHHH
Q 036290 294 SSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHV-TFSILLRQCGKLLDLDLGLQL 369 (796)
Q Consensus 294 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~ 369 (796)
.+++..|..+|++... +++..|-..+..-.++..+..|..+++..... -|-+. .+--.+..--..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3556677777777654 46667777777778888888888888887654 33322 122223333456888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC--CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhc-C-Cc
Q 036290 370 QCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS--YKNITTWNELLSGYCFNCCDADVLKTFCNIWES-G-VE 445 (796)
Q Consensus 370 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~ 445 (796)
|+.-.+. .|+...|.+.|+.-.+-..++.|..+++... .|++.+|--...--.+.|....+..+|....+. | -.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 8877765 7888899999998888899999999988765 588888888888888888888888888877653 1 11
Q ss_pred ccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCC--chhHhHHHHHHHhcCCcchHHHHH--------hcCCCC---
Q 036290 446 VNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSC--GYICSSLIKSYVNFGQLDNSFEFS--------NGAERL--- 512 (796)
Q Consensus 446 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~~--- 512 (796)
-+...|.++..--.+...++.|.-++...++.- |.+ ...|..+...--+-|+.....+.. +.+...
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 122334444444445677888888888877753 322 455666665555666655444332 222222
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHH----HHH-HH---hccCchHHHHHHHHHHHHhCCCC
Q 036290 513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEY--ILGT----ILN-SC---AAIGAYQRTKSIHPFVIKLGFNT 582 (796)
Q Consensus 513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--t~~~----ll~-~~---~~~~~~~~a~~~~~~~~~~~~~~ 582 (796)
|-.+|--.+..--..|+.+...++|++.... ++|-.. .|.- -|+ +| ....+.+.+.++++...+ -++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 4556666777777789999999999998765 455321 1111 122 22 356789999999999888 3333
Q ss_pred chhHHHHHH----HHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 036290 583 EVYVASAVI----DAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVS 656 (796)
Q Consensus 583 ~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 656 (796)
...+|.-+- ....++.++..|.+++...+.. |-..+|...|..-.+.++++...+++++..+ ..| |-.+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHH
Confidence 455555543 3345789999999999888776 7888899999999999999999999999999 667 7788888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----
Q 036290 657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCR----- 730 (796)
Q Consensus 657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~----- 730 (796)
....-...|+.+.|..+|+-+.++..+..-...|.+.|+--...|.++.|..+++++ ...+...+|-++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 877778899999999999999866444444666777888888899999999999998 33444457766655433
Q ss_pred hcC-----------ChHHHHHHHHHHHc
Q 036290 731 IHG-----------NKELGEWASEKLLL 747 (796)
Q Consensus 731 ~~g-----------~~~~A~~~~~~~~~ 747 (796)
+.| +...|..+|+++..
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 344 56788999998875
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=5e-11 Score=115.56 Aligned_cols=435 Identities=12% Similarity=0.083 Sum_probs=273.1
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHH-HHHHhcccCChHHHHHHHHHHHHhCCCCchh----HHHHHHHHH
Q 036290 318 LFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSI-LLRQCGKLLDLDLGLQLQCLALHCGFLDEEN----VTSSLIYMF 392 (796)
Q Consensus 318 li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~ll~~~ 392 (796)
|..-|..+.-..+|+..|+-..+...-|+...... +-..+.+.+++.+|.++++.....-...+.. +.+.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33445555666778888887777777776654432 2234566777888888887776642222222 234444456
Q ss_pred HhcCChHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCc------------ccHHHHHHHHHH-
Q 036290 393 CRCGAVEMAHSVFDNVSY--KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVE------------VNGCTFFYVVET- 457 (796)
Q Consensus 393 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------p~~~t~~~ll~~- 457 (796)
.+.|.+++|+..|+...+ |+..+--.|+-++...|+.++..+.|.+|...... |+....+..|..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 778888888888877653 66655444555555678888888888888764332 233333222211
Q ss_pred ----hcccCcHHHHHHHH---HHHHHhCCCCCch---------------------hHhHHHHHHHhcCCcchHHHHHhcC
Q 036290 458 ----CCRSENQQMVGQIH---GAIIKTGFSSCGY---------------------ICSSLIKSYVNFGQLDNSFEFSNGA 509 (796)
Q Consensus 458 ----~~~~~~~~~a~~~~---~~~~~~~~~~~~~---------------------~~~~l~~~~~~~g~~~~A~~~~~~~ 509 (796)
..+. +-..|++.. ..++.--+.|+-. .--.-..-|.+.|+++.|.++++-.
T Consensus 367 ~lk~~ek~-~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 367 HLKNMEKE-NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHh-hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111 111111111 1111111122110 0001123466788888888877776
Q ss_pred CCCCHhhHHHHHH-----HHHH-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290 510 ERLDMASWGAMMS-----ALVH-QGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE 583 (796)
Q Consensus 510 ~~~~~~~~~~li~-----~~~~-~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 583 (796)
...|..+-.+... -|.+ ..++.+|.+.-+...... +-+......--+.....|++++|.+.+++.....-.-.
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 6654443322211 1222 234555555554433221 11211111111223457899999999998887654433
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 036290 584 VYVASAVIDAYAKCGDIKGARMAFDQSF--NSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSA 660 (796)
Q Consensus 584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 660 (796)
...|+ +.-.+-..|++++|++.|-..- -..+......+...|....+...|++++.+... +-| |.....-|...
T Consensus 525 ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dl 601 (840)
T KOG2003|consen 525 EALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADL 601 (840)
T ss_pred HHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHH
Confidence 33333 2334667899999999883322 235777788888889999999999999877665 666 77888889999
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChHH
Q 036290 661 CSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGC-RIHGNKEL 737 (796)
Q Consensus 661 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~ 737 (796)
|-+.|+-..|.+..-+-- ...| +..+...|..-|....-+++|+.+|++. -++|+..-|..++..| .+.|++..
T Consensus 602 ydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred hhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 999999999988765443 3444 4888888888899999999999999998 4789999999888775 67799999
Q ss_pred HHHHHHHHHccCCCCCcceEEec
Q 036290 738 GEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 738 A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
|..+++...+..|++..-.-.|.
T Consensus 679 a~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHH
Confidence 99999999999999887654443
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=1.6e-10 Score=121.20 Aligned_cols=281 Identities=12% Similarity=0.053 Sum_probs=176.4
Q ss_pred cCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHh--HHHHHHHhcCCcchHH
Q 036290 426 NCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICS--SLIKSYVNFGQLDNSF 503 (796)
Q Consensus 426 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~ 503 (796)
.|+++.|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+..+.+. .|+...+. .....+...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~------- 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR------- 166 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC-------
Confidence 577777776666544332111 112222233335566666666666666543 22222211 223344444
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290 504 EFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE 583 (796)
Q Consensus 504 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 583 (796)
|+++.|...++++.+.. +-++.....+...+.+.|+++.+.+++..+.+.+..++
T Consensus 167 ------------------------g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 167 ------------------------NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred ------------------------CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 55555555555544432 22233444444455555555555555555554433321
Q ss_pred h-------hHHHHHHHHHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290 584 V-------YVASAVIDAYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT 653 (796)
Q Consensus 584 ~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 653 (796)
. ..|..++.......+.+...+++ +.++. .++.....+..++...|+.++|.+++++..+ ..|+...
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w-~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l 298 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWW-KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL 298 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH
Confidence 1 12222233333344555666666 44433 4777888899999999999999999999988 3455522
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRI 731 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 731 (796)
.++.+....++.+++.+..+...++ .|+ +..+..+...+.+.|++++|.+.|++. ...|+..++..+...+.+
T Consensus 299 --~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 299 --VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR 373 (398)
T ss_pred --HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2334445669999999999999844 566 667889999999999999999999998 678999999999999999
Q ss_pred cCChHHHHHHHHHHHccC
Q 036290 732 HGNKELGEWASEKLLLLL 749 (796)
Q Consensus 732 ~g~~~~A~~~~~~~~~~~ 749 (796)
.|+.++|.+++++.+.+.
T Consensus 374 ~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 374 LHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred cCCHHHHHHHHHHHHhhh
Confidence 999999999999998754
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=8.9e-11 Score=123.13 Aligned_cols=277 Identities=11% Similarity=0.058 Sum_probs=179.3
Q ss_pred cCChHHHHHHHHhCCCC--Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHH--HHHHHhcccCcHHHHHH
Q 036290 395 CGAVEMAHSVFDNVSYK--NIT-TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFF--YVVETCCRSENQQMVGQ 469 (796)
Q Consensus 395 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 469 (796)
.|+++.|.+.+....+. +.. .|-.......+.|+++.|...+.++.+ ..|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999876653 223 333334555889999999999999987 456654333 33557788999999999
Q ss_pred HHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 036290 470 IHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE 549 (796)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 549 (796)
.++.+.+.. |-++.....+...|.+.|++++|.++ +..+.+.+..++.
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~-------------------------------l~~l~k~~~~~~~ 222 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDI-------------------------------LPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHH-------------------------------HHHHHHcCCCCHH
Confidence 999998876 55555666666655555555555544 4444443322111
Q ss_pred -------HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-ChhHHHH
Q 036290 550 -------YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN-DVIVYNT 621 (796)
Q Consensus 550 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 621 (796)
.+|..++.......+.+...++++.+-+. .+.++.....+...+...|+.++|.+.+++.++.+ +. --.
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~--~l~ 299 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE--RLV 299 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHH
Confidence 11222222222233334444444443222 23356666777777777788888877776666643 22 122
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc
Q 036290 622 LIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRN 700 (796)
Q Consensus 622 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 700 (796)
++.+....++.+++++..+...+ ..| |...+..+.+.|.+.|++++|.+.|+... ...|+...+..+..++.+.
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al---~~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL---KQRPDAYDYAWLADALDRL 374 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHc
Confidence 33444455788888888888777 456 44456677778888888888888888887 5578877777888888888
Q ss_pred CChHHHHHHHHhC
Q 036290 701 GYLEDAKHVIEIM 713 (796)
Q Consensus 701 g~~~~A~~~~~~~ 713 (796)
|+.++|.+.+++.
T Consensus 375 g~~~~A~~~~~~~ 387 (398)
T PRK10747 375 HKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHH
Confidence 8888888887764
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=2.6e-10 Score=120.35 Aligned_cols=283 Identities=13% Similarity=0.003 Sum_probs=173.6
Q ss_pred hcCCchHHHHHHHHHHhcCCcccHHH-HHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHH
Q 036290 425 FNCCDADVLKTFCNIWESGVEVNGCT-FFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSF 503 (796)
Q Consensus 425 ~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 503 (796)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+.+.+....+..-.+...+....
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~-------------- 159 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR-------------- 159 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH--------------
Confidence 467777777777665443 333222 222334444556666666666555443211111122222
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290 504 EFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE 583 (796)
Q Consensus 504 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 583 (796)
...+...|+++.|...++++.+.. +-+......+...+...|+++.+.+.+..+.+.+..+.
T Consensus 160 -----------------a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 160 -----------------TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred -----------------HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 344445555555665555555542 22334455555555666666666666666655544322
Q ss_pred hhHHHHHHHHH---H----hcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290 584 VYVASAVIDAY---A----KCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT 653 (796)
Q Consensus 584 ~~~~~~li~~~---~----~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 653 (796)
......-..++ . .....+...+.+ +..+. .+...+..+...+...|+.++|.+++++..+ ..||...
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~-~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~ 298 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWW-KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCccc
Confidence 21111111111 1 122233444444 33433 3778888899999999999999999999998 4565542
Q ss_pred H---HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-c--hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHH
Q 036290 654 F---VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-P--DCYGCLVDMLSRNGYLEDAKHVIEI--M-PFQPSPTVYRS 724 (796)
Q Consensus 654 ~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ 724 (796)
. ..........++.+.+.+.++...+. .|+ + ....++...+.+.|++++|.+.|+. . ...|+...+..
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 1 11222234457888999999888844 555 4 6677999999999999999999994 3 57899998999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHc
Q 036290 725 LLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 725 l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
+...+.+.|+.++|.+++++.+.
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.8e-11 Score=125.37 Aligned_cols=280 Identities=15% Similarity=0.147 Sum_probs=215.8
Q ss_pred cHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC------CCHhhHHHHHHHHHHcCChhHHHHH
Q 036290 463 NQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER------LDMASWGAMMSALVHQGHNHEAVTI 536 (796)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~ 536 (796)
+..+|...|.. .-..+.-+..+...+..+|...+++++|.++|+.+.+ .+...|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 34556666666 3333344456777778888888888888888887765 3667787777665432 23333
Q ss_pred HH-HHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--
Q 036290 537 FH-SLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-- 613 (796)
Q Consensus 537 ~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 613 (796)
+. ++.+. -+-.+.+|.++-++|+-.++.+.|.+.|+..++.+.. ....|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 32 22322 2556789999999999999999999999988876544 6778888888888889999999999666653
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290 614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG 691 (796)
Q Consensus 614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 691 (796)
.+-..|--+...|.+.++++.|+-.|++..+ +.| +.+....+...+-+.|+.|+|+++++++. -+.|. +.+-.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHH
Confidence 2445566677889999999999999999998 788 66667777788899999999999999998 45565 55555
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
..+..+...+++++|+..++++ .+.|+. .++..+...|.+.|+.+.|+.-+--+.+++|.-..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6778888899999999999999 466755 67788888899999999999999999999997544
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=2.5e-12 Score=128.84 Aligned_cols=253 Identities=15% Similarity=0.180 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCcchHHHHHhcC-CC----CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290 488 SLIKSYVNFGQLDNSFEFSNGA-ER----LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI 562 (796)
Q Consensus 488 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 562 (796)
.+...+.+.|++++|.++++.. .. .+...|..+.......++.+.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4456666777777777777432 22 23444444555555567777888888877665422 44455555555 577
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCChhHHHHHHHHHHhcCChHHHHHH
Q 036290 563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN----SNDVIVYNTLIMAYAHHGLVSEAMEI 638 (796)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~ 638 (796)
+++++|.+++....+.. ++...+..++..+.+.++++++.++++.... .++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776554433 3555666777788888888888888755222 24777888888999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036290 639 FDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ 716 (796)
Q Consensus 639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 716 (796)
+++..+ ..| |......++..+...|+.+++.++++...+. ...|+..+..+..++...|+.++|..++++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999998 678 4667888999999999999999999888855 2555778889999999999999999999998 334
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 717 P-SPTVYRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 717 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
| |+.+...+..++...|+.++|.++.+++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 5 6777788899999999999999999988753
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=3.1e-10 Score=119.76 Aligned_cols=284 Identities=10% Similarity=-0.028 Sum_probs=188.8
Q ss_pred HhcCChHHHHHHHHhCCC--CC-hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHH--HHHHHHHHhcccCcHHHH
Q 036290 393 CRCGAVEMAHSVFDNVSY--KN-ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGC--TFFYVVETCCRSENQQMV 467 (796)
Q Consensus 393 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 467 (796)
...|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+.+.+..+. .|+.. .-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 468999999999988765 33 233444557788899999999999998764 34443 333346667778889999
Q ss_pred HHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 036290 468 GQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKP 547 (796)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 547 (796)
...++.+.+.. |-++.+... +...+.+.|++++|.+.+..+.+.++.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~l-------------------------------l~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKL-------------------------------AEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHH-------------------------------HHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 88888888776 334444444 4445555566666666666666554332
Q ss_pred CHHHHHHHHHHH---hccCchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhH--
Q 036290 548 DEYILGTILNSC---AAIGAYQRTKSIHPFVIKLGF---NTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIV-- 618 (796)
Q Consensus 548 ~~~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~-- 618 (796)
+......-..+. ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+.+++.++. ||...
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 221111111111 122222222333333333322 137778888888999999999999999777774 54432
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 036290 619 -YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA---TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLV 694 (796)
Q Consensus 619 -~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 694 (796)
...........++.+.+.+.+++..+ ..|+.. ...++.+.|.+.|++++|.+.|+....- ...|+...+..+.
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La 377 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAA 377 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHH
Confidence 12222223345778889999988887 567444 4567888999999999999999954322 6689988888999
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036290 695 DMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~ 713 (796)
..+.+.|+.++|.+++++.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999874
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=1.2e-09 Score=105.51 Aligned_cols=286 Identities=14% Similarity=0.065 Sum_probs=204.0
Q ss_pred cCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHH
Q 036290 426 NCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEF 505 (796)
Q Consensus 426 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 505 (796)
.|++.+|.++..+-.+.+-.|- ..|..-..+.-..|+.+.+-.++.+..+..-.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5777777777777666554442 234455566667777777777777777764466666777777777778888777766
Q ss_pred HhcCC---CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 036290 506 SNGAE---RLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNT 582 (796)
Q Consensus 506 ~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 582 (796)
.+... ..++........+|.+.|++.....++..|.+.|.--++..-. +
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-----------------L----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------H-----------
Confidence 55443 3567777778888888888888888888888777554432100 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036290 583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMS 659 (796)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 659 (796)
...++..+++-....+..+.-...+ +.++. .++..-.+++.-+.+.|+.++|.++.++..+.+.+|+. ...-
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W-~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWW-KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLI 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHH-HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHH
Confidence 0112222233223333333333344 33332 35667778888888999999999999999888877772 2233
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 036290 660 ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELG 738 (796)
Q Consensus 660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A 738 (796)
.+.+-++.+.=++..+...+.++..| ..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|..+..++.+.|++..|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 56788888888888888886765555 77888999999999999999999987 7899999999999999999999999
Q ss_pred HHHHHHHHc
Q 036290 739 EWASEKLLL 747 (796)
Q Consensus 739 ~~~~~~~~~ 747 (796)
.++.++.+-
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 999999885
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.1e-09 Score=104.18 Aligned_cols=369 Identities=12% Similarity=0.058 Sum_probs=253.5
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHH--H
Q 036290 377 GFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFY--V 454 (796)
Q Consensus 377 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~--l 454 (796)
+...|...+-..-..+.+.|....|++.|......-+..|.+.+....-..+.+.+..+. .|...|...+.. +
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHH
Confidence 334444433333344556778888888887776544444444443322222222221111 122222222222 2
Q ss_pred HHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCC------CHhhHHHHHHHHHHcC
Q 036290 455 VETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERL------DMASWGAMMSALVHQG 528 (796)
Q Consensus 455 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~ 528 (796)
..++......+++..-.......|++.+...-+....+.-...++|.|+.+|+.+.+. |..+|+.++-.- ..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--ND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hh
Confidence 3445555677778777888888888888888888888888889999999999988763 455666655432 22
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 036290 529 HNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFD 608 (796)
Q Consensus 529 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 608 (796)
+ ..+..+..-...--+-.+.|..++.+.|+-.++.++|..+|+...+.+.. ....|+.+..-|....+...|.+-++
T Consensus 312 ~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 K--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred h--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 12222222211112444567888888888889999999999999887766 66788888899999999999999997
Q ss_pred ccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 036290 609 QSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP 685 (796)
Q Consensus 609 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 685 (796)
.++.- .|-..|-.|.++|.-.+-..-|+-.|++..+ ++| |...|.+|..+|.+.++.++|++.|.....- -+.
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dt 464 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDT 464 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--ccc
Confidence 77765 4888999999999999999999999999998 778 8888999999999999999999999988733 233
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 686 SPDCYGCLVDMLSRNGYLEDAKHVIEIM-------P-FQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
+...+..|.++|-+-++.++|...+++. + ..|.. ..--.|..-+.+.+++++|.........-++.-..+-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak 544 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAK 544 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHH
Confidence 5688889999999999999999888776 2 22211 1222355557888999999888777776655444443
Q ss_pred EEe
Q 036290 757 VLL 759 (796)
Q Consensus 757 ~~l 759 (796)
.+|
T Consensus 545 ~Ll 547 (559)
T KOG1155|consen 545 ALL 547 (559)
T ss_pred HHH
Confidence 333
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.1e-07 Score=93.51 Aligned_cols=448 Identities=13% Similarity=0.139 Sum_probs=257.1
Q ss_pred cCChhHHHHHhhccCC---CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHH
Q 036290 193 LGDVAAAERVFYSISS---DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIH 269 (796)
Q Consensus 193 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 269 (796)
.+++..|..+|+.... .+...|-.-+..-.++.....|..++++....=...|.. |--.+..=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 4667778888877654 345556667777778888888888888776532222221 212222223346666666666
Q ss_pred HHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcC--CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHc-CC-CC
Q 036290 270 GLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMA--DKDVISWNTLFGGFSENKNPGQTASLFHKFILS-GS-RP 345 (796)
Q Consensus 270 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~-~p 345 (796)
+.... .+|+...|++.|+.-.+-..++.|..++++.. .|++.+|-....--.++|....+..+|+...+. |- .-
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 66543 35666666666666666666666666666543 466666666555555666666666666655432 10 00
Q ss_pred CcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHH---HhC-----CCC---C
Q 036290 346 NHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDE--ENVTSSLIYMFCRCGAVEMAHSVF---DNV-----SYK---N 412 (796)
Q Consensus 346 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~---~~~-----~~~---~ 412 (796)
+...|.+....-.+...++.|.-+|...+..- +.+ ...|..+...--+-|+.....+.. ..+ ... |
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 11122222222233445555555555555431 111 233444444333444433332222 111 111 2
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccH-------HHHHHHHHHh---cccCcHHHHHHHHHHHHHhCCCCC
Q 036290 413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNG-------CTFFYVVETC---CRSENQQMVGQIHGAIIKTGFSSC 482 (796)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 482 (796)
-.+|-..+..--..|+.+...++|+....+ ++|-. ..|.-+=-+| ....+.+.+.++++..++ =+|..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcc
Confidence 234444444444455555555555555543 23311 1111111111 122344444444444444 12222
Q ss_pred chhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290 483 GYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI 562 (796)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 562 (796)
..++..+ |-....--.++.+...|.+++.... |..|...+|...|..=.+.
T Consensus 400 kFtFaKi---------------------------WlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 400 KFTFAKI---------------------------WLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred cchHHHH---------------------------HHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence 3333222 2222333456778888888887765 6689999999999998999
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC----ChhHHHHHHHHHHhcCChHHHHHH
Q 036290 563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN----DVIVYNTLIMAYAHHGLVSEAMEI 638 (796)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 638 (796)
++++....+++.....++. +..+|......-...|+.+.|..+|.-++.+| ....|.+.|..-...|.++.|..+
T Consensus 451 ~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 9999999999999988776 77788888888888999999999997778777 345677777777789999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHh-----ccC-----------CHHHHHHHHHHhH
Q 036290 639 FDKMKLANLQPSQATFVSVMSACS-----HKG-----------LVDKGCLLFKSMD 678 (796)
Q Consensus 639 ~~~m~~~g~~p~~~t~~~ll~~~~-----~~g-----------~~~~A~~~~~~~~ 678 (796)
++++++. .+....|.++..--. ..| ....|..+|+++.
T Consensus 530 YerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 530 YERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 9999884 444456655543222 233 4556777777665
No 47
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=2.2e-08 Score=104.66 Aligned_cols=376 Identities=12% Similarity=0.084 Sum_probs=244.6
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHH
Q 036290 374 LHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCT 450 (796)
Q Consensus 374 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 450 (796)
....+..|..+|..|.-++.++|+++.+.+.|++... .....|+.+...+...|....|..++++-......|+..+
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3345567888888898999999999999999988764 3455788888888888888888888887765443454444
Q ss_pred HHHHHH-Hhc-ccCcHHHHHHHHHHHHHh--CC--CCCchhHhHHHHHHHhcCC-----------cchHHHHHhcCCC--
Q 036290 451 FFYVVE-TCC-RSENQQMVGQIHGAIIKT--GF--SSCGYICSSLIKSYVNFGQ-----------LDNSFEFSNGAER-- 511 (796)
Q Consensus 451 ~~~ll~-~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~-- 511 (796)
-..+.. .|. +.+..+++..+...++.. +. ...+..|..+.-+|...-. ..++.+.+++..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 433333 332 346666666666666551 11 2223344444444432211 1234445555433
Q ss_pred -CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-hCCCC-------
Q 036290 512 -LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIK-LGFNT------- 582 (796)
Q Consensus 512 -~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------- 582 (796)
.|+...--+.--|+-.++.+.|++...+..+.+-.-+...|..+.-.+...+++..|+.+.+.... .|...
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 122222223334566677888888888887775566777777777777777788888777765443 22210
Q ss_pred -----------chhHHHHHHHHHHh---------c--------------CCHHHH-------HHHHh----cc-----CC
Q 036290 583 -----------EVYVASAVIDAYAK---------C--------------GDIKGA-------RMAFD----QS-----FN 612 (796)
Q Consensus 583 -----------~~~~~~~li~~~~~---------~--------------g~~~~A-------~~~~~----~~-----~~ 612 (796)
...+...++..+-. . ++..+| ..... .+ ++
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 01111111111110 0 000001 00110 00 11
Q ss_pred ------CCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290 613 ------SND------VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 613 ------~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 679 (796)
.|+ ...|......+.+.++.++|...+.+... +.| ....|......+...|++++|.+.|....
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al- 711 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL- 711 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-
Confidence 111 12455666778888999999988888877 556 55667766677888999999999998887
Q ss_pred hcCCCCC-chHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 680 QYGMQPS-PDCYGCLVDMLSRNGYLEDAKH--VIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 680 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
.+.|+ +.+..++..++.+.|+..-|.. ++..+ .+.| +...|..+...+.+.||.++|...|+-++++++.+|.
T Consensus 712 --~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 712 --ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred --hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 78998 8899999999999998777776 77776 6666 5689999999999999999999999999999988776
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=7.3e-07 Score=91.38 Aligned_cols=175 Identities=11% Similarity=0.108 Sum_probs=127.3
Q ss_pred ChhHhhHHHHHHHccCChhHHHHHhhccCC-----CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036290 179 NPFVGCSVLNFYAKLGDVAAAERVFYSISS-----DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINAL 253 (796)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 253 (796)
-+.++-.-+....++|++...+..|++... .....|...+.-....|-++-++.++++..+ .++..-+.-|
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHH
Confidence 345666667778888999999999986532 3556799999988899999999999999976 3444467778
Q ss_pred HhhccCCCchHHHHHHHHHHHhc------CCCChHHHHHHHHhhhcCCCHH---HHHHHHhhcCCC--C--cchHHHHHH
Q 036290 254 QGCSLVADFDIGRQIHGLIIRSE------VECSISIVNALIDMYIKSSGMD---YAFKVFERMADK--D--VISWNTLFG 320 (796)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~--~--~~~~~~li~ 320 (796)
..++..+++++|.+.+..++... .+.+-..|.-+.+..+++.+.- ....+++.+..+ | ...|++|.+
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 88899999999999888776432 2445567777777777664432 244555555542 3 357999999
Q ss_pred HHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcc
Q 036290 321 GFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGK 359 (796)
Q Consensus 321 ~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 359 (796)
.|.+.|.+++|.++|++.... ..+...|+.+..+|+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 999999999999999997654 3344455556555543
No 49
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.5e-06 Score=91.79 Aligned_cols=646 Identities=11% Similarity=0.083 Sum_probs=324.7
Q ss_pred HhhhhccCChhhHHHHHHHH----------HHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC--CCcchHHHHHH
Q 036290 51 LSLSENLKSRVLGTQVHGHI----------VKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE--RNLVSWTLIVS 118 (796)
Q Consensus 51 l~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~ 118 (796)
+..|.+.+....+..+|++. .+.|..||.. .+++...+ -.++.+.+....|++ +...-.+.+..
T Consensus 475 L~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~D 550 (1666)
T KOG0985|consen 475 LSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVD 550 (1666)
T ss_pred HHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHH
Confidence 34455555555555555432 3457777643 24444444 567777776665544 44455777777
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhH
Q 036290 119 AAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAA 198 (796)
Q Consensus 119 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 198 (796)
.+........+..++-..... ..|+.....+=+-----.+ |-++-+.+.-.+.-. ..-+..+...|.+.|-...
T Consensus 551 lFme~N~iQq~TSFLLdaLK~-~~Pd~g~LQTrLLE~NL~~----aPqVADAILgN~mFt-HyDra~IAqLCEKAGL~qr 624 (1666)
T KOG0985|consen 551 LFMELNLIQQCTSFLLDALKL-NSPDEGHLQTRLLEMNLVH----APQVADAILGNDMFT-HYDRAEIAQLCEKAGLLQR 624 (1666)
T ss_pred HHHHHHhhhhhHHHHHHHhcC-CChhhhhHHHHHHHHHhcc----chHHHHHHHhccccc-cccHHHHHHHHHhcchHHH
Confidence 777777777777777666543 3555554433221111111 222223333333221 2226667788889999999
Q ss_pred HHHHhhccCC--CCce-----eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHH
Q 036290 199 AERVFYSISS--DDVG-----CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGL 271 (796)
Q Consensus 199 A~~~~~~~~~--~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 271 (796)
|.+.+..+.. +.++ .-.-+ ..|.-.-.++++.++++.|...+++-|..+...+..-|...=..+...++|+.
T Consensus 625 aLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~ 703 (1666)
T KOG0985|consen 625 ALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFES 703 (1666)
T ss_pred HHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence 9988877653 1111 11112 23444457889999999999988888877766665555544444445555554
Q ss_pred HHHh-----------cCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC-------------------C-----------
Q 036290 272 IIRS-----------EVECSISIVNALIDMYIKSSGMDYAFKVFERMAD-------------------K----------- 310 (796)
Q Consensus 272 ~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~----------- 310 (796)
.... ++..|+.+.-..|.+.++.|.+.+.+++.++-.- |
T Consensus 704 fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fV 783 (1666)
T KOG0985|consen 704 FKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFV 783 (1666)
T ss_pred hccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccH
Confidence 4321 3456777778889999999999999888776431 1
Q ss_pred -CcchH------HHHHHHHHhCCCccHHHHHHHHHHHcCCCC-----------CcchHHHHHHHhcccCChHHHHHHHHH
Q 036290 311 -DVISW------NTLFGGFSENKNPGQTASLFHKFILSGSRP-----------NHVTFSILLRQCGKLLDLDLGLQLQCL 372 (796)
Q Consensus 311 -~~~~~------~~li~~~~~~~~~~~a~~l~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~~~~~a~~~~~~ 372 (796)
|.+.| -..|..|.+.-++...-.+.-.+....+.- ....-..+..-+-+.+++..-..+++.
T Consensus 784 hdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~ 863 (1666)
T KOG0985|consen 784 HDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLES 863 (1666)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHH
Confidence 11111 112333333322222111111111100000 000011122222333444444444555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhC------------CCCCh-------------------h----hHH
Q 036290 373 ALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNV------------SYKNI-------------------T----TWN 417 (796)
Q Consensus 373 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~------------~~~~~-------------------~----~~~ 417 (796)
....| .-|..++|+|...|..+++-.+- ++++- .++|. - .|-
T Consensus 864 ~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK 940 (1666)
T KOG0985|consen 864 LIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFK 940 (1666)
T ss_pred HHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHH
Confidence 55555 34555666666655544332211 00000 00000 0 111
Q ss_pred HHHHHHHhcCCch---HHH--------HHHHHHHhcCC--cccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhC--CCCC
Q 036290 418 ELLSGYCFNCCDA---DVL--------KTFCNIWESGV--EVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTG--FSSC 482 (796)
Q Consensus 418 ~li~~~~~~g~~~---~a~--------~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 482 (796)
...+.+.+..+.+ +.+ .+.++..+.++ ..|+...+..+.++...+-..+..++++.++=.. +..+
T Consensus 941 ~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~ 1020 (1666)
T KOG0985|consen 941 SQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN 1020 (1666)
T ss_pred HHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc
Confidence 1111111122211 111 12222222221 1122223333333333333333333333332111 0001
Q ss_pred chhHhH---------------------------HHHHHHhcCCcchHHHHHhcCCC------------------------
Q 036290 483 GYICSS---------------------------LIKSYVNFGQLDNSFEFSNGAER------------------------ 511 (796)
Q Consensus 483 ~~~~~~---------------------------l~~~~~~~g~~~~A~~~~~~~~~------------------------ 511 (796)
...-|. +.......+-+++|..+|+....
T Consensus 1021 ~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~ 1100 (1666)
T KOG0985|consen 1021 RNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAER 1100 (1666)
T ss_pred hhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHh
Confidence 111111 11112222233344444433211
Q ss_pred -CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290 512 -LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV 590 (796)
Q Consensus 512 -~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 590 (796)
..+..|..+..+-.+.|...+|.+-|-+ .-|+..|.-+++.+.+.|.+++-.+++...++..-.|.+. +.|
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eL 1172 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SEL 1172 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHH
Confidence 2456788899998899999988887755 3467789999999999999999999998888877766554 578
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKG 670 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 670 (796)
+-+|++.+++.+..+++ ..|+......+.+-|...|.++.|.-+|.... .|..|...+...|+++.|
T Consensus 1173 i~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHH
Confidence 89999999999888776 23455555555555666666665555543321 244444444444444444
Q ss_pred HHHHHHhHh---------------------hcCCC--CCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 036290 671 CLLFKSMDS---------------------QYGMQ--PSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSL 725 (796)
Q Consensus 671 ~~~~~~~~~---------------------~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 725 (796)
...-+++-+ --|+. ....-+.-|+.-|-..|-+++-+.+++.. |+.. .-..|..|
T Consensus 1240 VD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1240 VDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred HHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 433222210 00221 22334455666666666666666666654 4332 22344444
Q ss_pred HHHHHh
Q 036290 726 LSGCRI 731 (796)
Q Consensus 726 ~~~~~~ 731 (796)
.-.|.+
T Consensus 1320 aiLYsk 1325 (1666)
T KOG0985|consen 1320 AILYSK 1325 (1666)
T ss_pred HHHHHh
Confidence 444444
No 50
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.3e-08 Score=98.18 Aligned_cols=310 Identities=12% Similarity=-0.023 Sum_probs=226.7
Q ss_pred cccHHHHHHHHHHhcc--cCcHHHHHHHHHHHHH-hCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHH-
Q 036290 445 EVNGCTFFYVVETCCR--SENQQMVGQIHGAIIK-TGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAM- 520 (796)
Q Consensus 445 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l- 520 (796)
.|...+....+.+++. .++...+...+-.+.. .-++.+......+.+++...|+.++|...|++....|+.+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444444444432 3444444444444433 45677889999999999999999999999998876555443332
Q ss_pred --HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036290 521 --MSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG 598 (796)
Q Consensus 521 --i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 598 (796)
.--+.+.|+.+....+.+.+.... .-....|..-.......+++..|..+.+..++.... +...+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhcc
Confidence 334567788888888888876542 122233333333445677888898888887776544 3444444456788899
Q ss_pred CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-cCCHHHHHHHH
Q 036290 599 DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM-SACSH-KGLVDKGCLLF 674 (796)
Q Consensus 599 ~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~-~g~~~~A~~~~ 674 (796)
+.++|.-.|+....- -+...|.-|+.+|...|++.+|..+-+..... +.-+..+...+- ..|.- ..--++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 999999888655543 38899999999999999999999988776652 233555655442 33332 23468899999
Q ss_pred HHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290 675 KSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 675 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
++.. .+.|+ ......+...+...|+.++++.++++. ...||....+.|...+...+.+.+|...|..+++++|++
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8877 67898 778888999999999999999999987 678999999999999999999999999999999999999
Q ss_pred CcceEEec
Q 036290 753 DAAHVLLS 760 (796)
Q Consensus 753 ~~~~~~l~ 760 (796)
..+...|-
T Consensus 505 ~~sl~Gl~ 512 (564)
T KOG1174|consen 505 KRTLRGLR 512 (564)
T ss_pred hHHHHHHH
Confidence 88766663
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.33 E-value=9.6e-12 Score=124.63 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHH
Q 036290 550 YILGTILNSCAAIGAYQRTKSIHPFVIKL-GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAY 626 (796)
Q Consensus 550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~ 626 (796)
..+..++..+...++++.+.++++.+... ..+.+...|..+...+.+.|+.++|.+.+++.+.. | |......++..+
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL 190 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444331 12234444555555555555555555555444442 3 345555555556
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHH
Q 036290 627 AHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLED 705 (796)
Q Consensus 627 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 705 (796)
...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.++++..+. .| |+.+...+.+++...|+.++
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~---~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL---NPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH---STT-HHHHHHHHHHHT-------
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc---ccccccccccccccccccccccc
Confidence 66666666555555555432 224444555566666666666666666665522 33 35555566666666666666
Q ss_pred HHHHHHhC
Q 036290 706 AKHVIEIM 713 (796)
Q Consensus 706 A~~~~~~~ 713 (796)
|.++.++.
T Consensus 267 A~~~~~~~ 274 (280)
T PF13429_consen 267 ALRLRRQA 274 (280)
T ss_dssp --------
T ss_pred cccccccc
Confidence 66665543
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=5.4e-09 Score=98.68 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=105.8
Q ss_pred CHHHHHHHHhccCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036290 599 DIKGARMAFDQSFNS-----NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLL 673 (796)
Q Consensus 599 ~~~~A~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 673 (796)
.+.-|.+.| +++.. .++.--.++..++.-..++++++..++.+..--..-|...| .+.++.+..|.+.+|+++
T Consensus 338 HlKiAqqff-qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFF-QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHH-HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHH
Confidence 455566666 44433 24445556677777777889999888888774233343334 467899999999999999
Q ss_pred HHHhHhhcCCCCCchHH-HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 674 FKSMDSQYGMQPSPDCY-GCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSL-LSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 674 ~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
|-.+... .++ +..+| ..|.++|.++|+++-|++++-++.-..+..+.-.+ ..-|.+.+.+=-|-+.|+.+..++|.
T Consensus 416 f~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 416 FIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 9887622 333 34444 46788999999999999999988654455544444 45599999999999999988888873
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1.5e-09 Score=101.44 Aligned_cols=287 Identities=13% Similarity=0.099 Sum_probs=173.8
Q ss_pred hcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCC-CCC--chhHhHHHHHHHhcCCcch
Q 036290 425 FNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGF-SSC--GYICSSLIKSYVNFGQLDN 501 (796)
Q Consensus 425 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~ 501 (796)
-+++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..|.|.++++.+.+..- +.+ ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567888888888887631 11222334455555666666777666666655321 111 1122234444555555555
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290 502 SFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN 581 (796)
Q Consensus 502 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 581 (796)
|+.+|..+.+ .| ..-......|+..|-...+|++|.+.-..+.+.+..
T Consensus 126 AE~~f~~L~d-------------------------------e~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 126 AEDIFNQLVD-------------------------------EG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHHhc-------------------------------ch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 5555554444 22 222233334444444444444444444444443332
Q ss_pred Cc----hhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036290 582 TE----VYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFV 655 (796)
Q Consensus 582 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 655 (796)
+. ...|.-+...+....+.+.|..++.+.+.. | .+..-..+.+.+...|+++.|.+.|+...+.+..--..+..
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 22 123445555566667777777777666654 2 33444456677888999999999999999865444556678
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc--
Q 036290 656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHV-IEIMPFQPSPTVYRSLLSGCRIH-- 732 (796)
Q Consensus 656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~-- 732 (796)
.|..+|.+.|+.++....+..+. ...+....-..+.+......-.+.|..+ .+.+.-+|+...+..++......
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~---~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAM---ETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH---HccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccc
Confidence 88899999999999999999888 3455655555566655554444555544 45567889999998888885433
Q ss_pred -CChHHHHHHHHHHHc
Q 036290 733 -GNKELGEWASEKLLL 747 (796)
Q Consensus 733 -g~~~~A~~~~~~~~~ 747 (796)
|..++...++++++.
T Consensus 331 eg~~k~sL~~lr~mvg 346 (389)
T COG2956 331 EGRAKESLDLLRDMVG 346 (389)
T ss_pred ccchhhhHHHHHHHHH
Confidence 456677777777764
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=1.1e-06 Score=90.23 Aligned_cols=320 Identities=12% Similarity=0.082 Sum_probs=172.3
Q ss_pred cCChHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCChHHHHHHHHhCCCCCh-------hhHHHHHHHHHhc
Q 036290 360 LLDLDLGLQLQCLALHCGFLD------EENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNI-------TTWNELLSGYCFN 426 (796)
Q Consensus 360 ~~~~~~a~~~~~~~~~~g~~~------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~ 426 (796)
.|+..+....+.++.+. +.| -...|..+.+.|-+.|+++.|+.+|++..+-+- .+|......-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45566666667666653 122 233567888889999999999999988775322 2455555556667
Q ss_pred CCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHH
Q 036290 427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFS 506 (796)
Q Consensus 427 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 506 (796)
.+++.|+++++..... |.... +..+ ..+..-++ .+.-+..++..+++.--..|-++....++
T Consensus 439 ~~~~~Al~lm~~A~~v---P~~~~----~~~y-d~~~pvQ~----------rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHV---PTNPE----LEYY-DNSEPVQA----------RLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hhHHHHHHHHHhhhcC---CCchh----hhhh-cCCCcHHH----------HHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7788888877766542 22111 0000 00000000 00112233444444445555566666666
Q ss_pred hcCCCCCHhhHHHHH---HHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---cCchHHHHHHHHHHHHhC
Q 036290 507 NGAERLDMASWGAMM---SALVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAA---IGAYQRTKSIHPFVIKLG 579 (796)
Q Consensus 507 ~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~ 579 (796)
+++.+.-..|-..++ .-+-.+.-++++.+++++-...--.|+. ..|+..+.-+.+ ....+.|..+|++..+ |
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 655542222111111 1122334455666666553322112332 234444333322 2356667777776666 4
Q ss_pred CCCchh--HHHHHHHHHHhcCCHHHHHHHHhccCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290 580 FNTEVY--VASAVIDAYAKCGDIKGARMAFDQSFNS----NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT 653 (796)
Q Consensus 580 ~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 653 (796)
.+|... .|-.....--+-|-...|..+++..... .-...||+.|.--+..=-......+|++..+ .-|+...
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~ 657 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKA 657 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHH
Confidence 443322 1111122223346666777777544333 1345677777655544445566778888888 4677666
Q ss_pred HHHHH---HHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCCh
Q 036290 654 FVSVM---SACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYL 703 (796)
Q Consensus 654 ~~~ll---~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 703 (796)
-...+ ..-++.|..+.|..++....+- +.|. +..|.+.=.--.+.|+-
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq~--~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQI--CDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhc--CCCcCChHHHHHHHHHHHhcCCH
Confidence 55444 3446789999999998776533 4444 66777777777888883
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.2e-07 Score=93.38 Aligned_cols=367 Identities=9% Similarity=0.016 Sum_probs=243.9
Q ss_pred cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHH-HHHHHHHhcCCchHHHHHH
Q 036290 358 GKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWN-ELLSGYCFNCCDADVLKTF 436 (796)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~ 436 (796)
...|..+.|...|...... .+-.-..| +....-..+.+.+..+....+..+...-. -+..++-...+.+++.+-.
T Consensus 175 k~~~~~s~A~~sfv~~v~~-~P~~W~AW---leL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 175 KELGLLSLAIDSFVEVVNR-YPWFWSAW---LELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred HhhchHHHHHHHHHHHHhc-CCcchHHH---HHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666554432 11222222 22222223344444333333322221111 2234555556778888888
Q ss_pred HHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC---CchhHhHHHHHHHhcCCcch-HHHHHhcCCCC
Q 036290 437 CNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSS---CGYICSSLIKSYVNFGQLDN-SFEFSNGAERL 512 (796)
Q Consensus 437 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 512 (796)
......|.+-+...-+....+.-...++++|+.+|+++.+.. |- |..+|..++-.-....++.- |..++ .+.+=
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKy 328 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKY 328 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccC
Confidence 888887776666655555566667789999999999998874 32 44555554433322222221 12221 22222
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290 513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVI 591 (796)
Q Consensus 513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 591 (796)
-+.|...+..-|.-.++.++|...|++..+. .|. ...|+.+-.-|....+...|.+-++..++.++. |-..|-.|.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLG 405 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLG 405 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhh
Confidence 3455666667777788999999999998765 444 455666667899999999999999999887765 888999999
Q ss_pred HHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 036290 592 DAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDK 669 (796)
Q Consensus 592 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 669 (796)
++|.-.+...-|+-+|++...- .|...|.+|..+|.+.++.++|.+.|.+....| +.+...+..|...+-+.++.++
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999776653 599999999999999999999999999999865 3466789999999999999999
Q ss_pred HHHHHHHhHhhc---C-CCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036290 670 GCLLFKSMDSQY---G-MQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEK 744 (796)
Q Consensus 670 A~~~~~~~~~~~---~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (796)
|.+.|++..... | +.|. .....-|..-+.+.+++++|..+..... . -.-..++|..+++.
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~-------------~--~~~e~eeak~LlRe 549 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL-------------K--GETECEEAKALLRE 549 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh-------------c--CCchHHHHHHHHHH
Confidence 999998877532 1 2332 3333345666777888888776655441 0 12245677777777
Q ss_pred HHccC
Q 036290 745 LLLLL 749 (796)
Q Consensus 745 ~~~~~ 749 (796)
+.+..
T Consensus 550 ir~~~ 554 (559)
T KOG1155|consen 550 IRKIQ 554 (559)
T ss_pred HHHhc
Confidence 76643
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.8e-09 Score=105.56 Aligned_cols=278 Identities=13% Similarity=0.027 Sum_probs=192.5
Q ss_pred CCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290 480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD---MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL 556 (796)
Q Consensus 480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 556 (796)
..++.+.....+-+...+++.+..++++...+.| ...+..-|.++...|+..+-..+=.+|.+. .+-...+|-++-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 4455566666677777778888888877776643 334555566777777777777777777665 244556777777
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290 557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE 634 (796)
Q Consensus 557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 634 (796)
-.|...|+..+|++.|......... -...|-.....|.-.|..|+|...+..+-+- +....+--+.--|.+.++++.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 7777778888888888877664433 3456777777888888888887766332221 122222233445777888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc-CCCC----CchHHHHHHHHHHhcCChHHHHH
Q 036290 635 AMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY-GMQP----SPDCYGCLVDMLSRNGYLEDAKH 708 (796)
Q Consensus 635 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 708 (796)
|.+.|.+... +.| |+..++-+.-.....+.+.+|..+|+...... .+.+ -..+++.|+.++.+.+++++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 8888888777 677 66666666555566778888888888776211 1111 24557788888888888888888
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 709 VIEIM-PFQ-PSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 709 ~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.+++. ... .+..++.++.-.+...|+++.|...+.+++-++|++..+-.+|..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 88877 333 366788888888888888999999999988888888776666654
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=7.6e-12 Score=86.87 Aligned_cols=50 Identities=20% Similarity=0.518 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 036290 108 RNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVS 157 (796)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 157 (796)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.9e-08 Score=95.54 Aligned_cols=401 Identities=12% Similarity=0.035 Sum_probs=239.9
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-cchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHH
Q 036290 316 NTLFGGFSENKNPGQTASLFHKFILSGSRPN-HVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEE-NVTSSLIYMFC 393 (796)
Q Consensus 316 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~ 393 (796)
-..-.-|.++|.+++|++.|.+..+. .|| +..|...-.+|...|+++++.+--....+. .|+. -.+..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34455688889999999999988764 677 667777777778888888877655554443 3332 12233344555
Q ss_pred hcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH---------HHhc--CCcccHHHHHHHHHHhcccC
Q 036290 394 RCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCN---------IWES--GVEVNGCTFFYVVETCCRSE 462 (796)
Q Consensus 394 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~~ 462 (796)
..|++++|+.- ++-.++..++....-.--+.+++++ |... .+-|+.....+....+...-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 56666665532 1222233333222222222222222 1111 13355444444443332210
Q ss_pred cHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhc--C---CcchHHHHHhcCC-------C---CCHhh------HHHHH
Q 036290 463 NQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNF--G---QLDNSFEFSNGAE-------R---LDMAS------WGAMM 521 (796)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g---~~~~A~~~~~~~~-------~---~~~~~------~~~li 521 (796)
......+.......+..++... + .+..|...+.+-. . .|... .....
T Consensus 266 ------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 266 ------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 0000011111111121111110 0 1222222221110 0 11111 11111
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290 522 SALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIK 601 (796)
Q Consensus 522 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 601 (796)
.-+.-.|+.-.|..-|+..+.....++. .|.-+-..|....+.++..+.|+...+.+.. ++.+|..-.+++.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 1223458888888889888776433332 2666777788888899999999988887766 6667777788888888999
Q ss_pred HHHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290 602 GARMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 602 ~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 679 (796)
+|..-|++.+.-. ++..|-.+.-+.-+.+++++++..|++.++. ++-....|+.....+..+++++.|.+.|+...
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai- 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI- 489 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH-
Confidence 9999997766653 5566666666666788999999999998874 33366778888888999999999999998887
Q ss_pred hcCCCCC---------chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 680 QYGMQPS---------PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 680 ~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
.+.|+ +.+-..++-.-. .+++..|..++++. .+.|.- ..|.+|.....+.|+.++|+++|++...+
T Consensus 490 --~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 490 --ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred --hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444 222222222222 37888999999888 566643 67888888888999999999999988764
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.1e-09 Score=112.44 Aligned_cols=194 Identities=13% Similarity=0.169 Sum_probs=121.3
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHH--
Q 036290 513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKP-DEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASA-- 589 (796)
Q Consensus 513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 589 (796)
.+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+.... .++..|++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHH
Confidence 4556666666666666666666666665543 33 344555444445555556666665554433 24444444
Q ss_pred -HHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036290 590 -VIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG 665 (796)
Q Consensus 590 -li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 665 (796)
+.-.|.+.++++.|+-.|+.++.- | +.+....+...+.+.|+.++|+.++++... ++| |...--.-...+...+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhc
Confidence 345577777777777777655554 2 666666677777777778888888877776 555 4444444455566677
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036290 666 LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP 717 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 717 (796)
++++|+..+++++ .+.|+ ...+..++..|.+.|+.+.|+.-|--+ ...|
T Consensus 572 ~~~eal~~LEeLk---~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 572 RYVEALQELEELK---ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred chHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 7888888887777 45666 566667777777778777777666544 3444
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6e-08 Score=97.92 Aligned_cols=267 Identities=13% Similarity=0.104 Sum_probs=155.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCC
Q 036290 419 LLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQ 498 (796)
Q Consensus 419 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 498 (796)
-.+-+...+++.+..++.....+. .++....+..=|.++...|+...-..+-..+++.- |..+.+|-++.-.|...|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcC
Confidence 334444455555555555555543 12233333333334444555444444444444433 5567777778777888888
Q ss_pred cchHHHHHhcCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHH
Q 036290 499 LDNSFEFSNGAERLD---MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAIGAYQRTKSIHPF 574 (796)
Q Consensus 499 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 574 (796)
.++|.+.|.+....| ...|-.+...|+-.|..+.|+..+...-+. -|.. .-+--+---|.+.++.+.|.++|.+
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888887766533 346888888888888899988888776443 1111 1122223346667778888888777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036290 575 VIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA 645 (796)
Q Consensus 575 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 645 (796)
.....+. |+.+.+-+.-.....+.+.+|..+|+..+.. ....+++.|..+|.+.+.+++|+..+++...
T Consensus 406 A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~- 483 (611)
T KOG1173|consen 406 ALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL- 483 (611)
T ss_pred HHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 6654433 5556666655556667777777777443311 0233455556666666666666666666655
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290 646 NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD 695 (796)
Q Consensus 646 g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 695 (796)
..| |..++.++.-.+...|+++.|.+.|.+.. .+.|+-.+-..++.
T Consensus 484 -l~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 484 -LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLK 530 (611)
T ss_pred -cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHH
Confidence 334 55556555555666666666666666555 55666444443433
No 61
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=2.8e-06 Score=88.15 Aligned_cols=276 Identities=13% Similarity=0.139 Sum_probs=128.3
Q ss_pred CChhHHHHHhcccCCCCcch--HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHH
Q 036290 93 GYFGWGLRVFDEMAERNLVS--WTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCF 170 (796)
Q Consensus 93 g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 170 (796)
..|..|+.+++.++.+++.+ |..+...|+..|+++.|.++|.+. ..++-.+.-|.+.|.+..|..+-++
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence 44444444444444433322 444444555555555555554432 1233344445555555544444322
Q ss_pred HHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHH
Q 036290 171 ALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFI 250 (796)
Q Consensus 171 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 250 (796)
. .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..++.+++.++-....+ ..|..
T Consensus 817 ~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~ 886 (1636)
T KOG3616|consen 817 C--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHK 886 (1636)
T ss_pred h--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHH
Confidence 2 23334444444444444455555555555544444442 34555555555555555554321111 22333
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccH
Q 036290 251 NALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQ 330 (796)
Q Consensus 251 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 330 (796)
.+-.-+-..|+++.|+.-|-... -|.+-+++|-.++.+++|.++-+.-...|..- .+.-.+++.-.-+.
T Consensus 887 ~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k--~v~flwaksiggda 955 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEK--HVAFLWAKSIGGDA 955 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHH--HHHHHHHHhhCcHH
Confidence 34444555666666665443322 24566677777777777777765433222211 11122233333345
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036290 331 TASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY 410 (796)
Q Consensus 331 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 410 (796)
|.+++++. | ....-+...+..+.++-|..+-+...+... | .+.-.+...+-..|++++|-+-+-+..+
T Consensus 956 avkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k~-~--~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 956 AVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDKM-G--EVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhccC-c--cchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 55555442 1 111223334455556666555544443321 1 1222333445566777777665554443
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.7e-11 Score=84.10 Aligned_cols=50 Identities=34% Similarity=0.476 Sum_probs=46.5
Q ss_pred CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhcc
Q 036290 209 DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSL 258 (796)
Q Consensus 209 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 258 (796)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999998874
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=3.5e-08 Score=95.53 Aligned_cols=291 Identities=14% Similarity=0.072 Sum_probs=169.6
Q ss_pred CCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 036290 325 NKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSV 404 (796)
Q Consensus 325 ~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 404 (796)
.|++.+|..+..+-.+.+-.|- ..|..-..+.-..|+.+.+-+++.+..+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5777777777777666554442 234445555666777777777777776654456666666777777788888877776
Q ss_pred HHhCC---CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC
Q 036290 405 FDNVS---YKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSS 481 (796)
Q Consensus 405 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 481 (796)
++.+. ..++........+|.+.|++.....++..|.+.|.--+...-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 65544 35677788888888888888888888888888775444321100
Q ss_pred CchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036290 482 CGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNS 558 (796)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 558 (796)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+++..|+. ..+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 001122222222222222222223333322 23334444455555555555555555555554444431 11112
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHH
Q 036290 559 CAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAM 636 (796)
Q Consensus 559 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 636 (796)
+.+. ++.+.-++..+..++. .++..+.+|...|.+.+.|.+|.
T Consensus 304 ~l~~-----------------------------------~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 304 RLRP-----------------------------------GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred hcCC-----------------------------------CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHH
Confidence 2233 3333333333232222 24466777777778888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 036290 637 EIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS 686 (796)
Q Consensus 637 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 686 (796)
+.|+...+ ..|+..+|+.+.+++.+.|+.++|.+..++.... -..|+
T Consensus 349 ~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~-~~~~~ 395 (400)
T COG3071 349 EALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL-TRQPN 395 (400)
T ss_pred HHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH-hcCCC
Confidence 88887666 6678888888888888888888888877776632 34444
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.6e-05 Score=85.80 Aligned_cols=643 Identities=12% Similarity=0.116 Sum_probs=327.2
Q ss_pred hhhHHHHHHHHccCChhHHHHHhcccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036290 80 FLQNNLIAMYSKCGYFGWGLRVFDEMAE---RNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCV 156 (796)
Q Consensus 80 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 156 (796)
..|-.-.+.+...|++++|.++--.-|+ ++..|-+..=.+=...|.+.--+..|..+...| +.|..---.+.+.-.
T Consensus 361 ~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL 439 (1666)
T KOG0985|consen 361 NLFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVL 439 (1666)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 3444445556677999999988877766 566666666666667788888888888888887 445443333344444
Q ss_pred ccCChhHHHHHHHHH-----HHhc--CCC-Ch----h------HhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHH
Q 036290 157 SMGASEFGYSIHCFA-----LKIR--IEK-NP----F------VGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMI 218 (796)
Q Consensus 157 ~~~~~~~a~~~~~~~-----~~~g--~~~-~~----~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 218 (796)
.+|+.+....++.+= .+.| +.| |. . +-+.++..|+.+|+++++.-...+.-. ..-|-.+|
T Consensus 440 ~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGy--TPdymflL 517 (1666)
T KOG0985|consen 440 QQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGY--TPDYMFLL 517 (1666)
T ss_pred hhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCC--CccHHHHH
Confidence 455544443333221 1233 111 11 1 123345555555555555544443321 12255566
Q ss_pred HHHHhCCCchHHHHHHHHHHHC-CCCCCHhhHHH--------------HHHhhccCCCchHH---HHHHHHHHHhcCC--
Q 036290 219 GGYAHCGYGFEALNVVSSMLFE-GITMDKYTFIN--------------ALQGCSLVADFDIG---RQIHGLIIRSEVE-- 278 (796)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~--------------ll~~~~~~~~~~~a---~~~~~~~~~~~~~-- 278 (796)
+...+ -.++++.++...|.+. +...|...... +|.++ +...++++ .++++.-...++.
T Consensus 518 q~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaL-K~~~Pd~g~LQTrLLE~NL~~aPqVA 595 (1666)
T KOG0985|consen 518 QQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDAL-KLNSPDEGHLQTRLLEMNLVHAPQVA 595 (1666)
T ss_pred HHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHh-cCCChhhhhHHHHHHHHHhccchHHH
Confidence 66655 5777777777777663 32223322211 11111 11122211 1222222222110
Q ss_pred --------CChHHHHHHHHhhhcCCCHHHHHHHHhhcCC--CCcchHH----HHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 036290 279 --------CSISIVNALIDMYIKSSGMDYAFKVFERMAD--KDVISWN----TLFGGFSENKNPGQTASLFHKFILSGSR 344 (796)
Q Consensus 279 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~li~~~~~~~~~~~a~~l~~~m~~~g~~ 344 (796)
-+..-+..+...|.++|-+..|++.+..+.+ +.++.-+ --+..|.-.-.++.+++.++.|...+++
T Consensus 596 DAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Nir 675 (1666)
T KOG0985|consen 596 DAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIR 675 (1666)
T ss_pred HHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 0112245556777788888888877776653 1111111 1123344455678889999999888888
Q ss_pred CCcchHHHHHHHhcccCChHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---
Q 036290 345 PNHVTFSILLRQCGKLLDLDLGLQLQCLALH-----------CGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY--- 410 (796)
Q Consensus 345 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--- 410 (796)
.+..+...+..-|...-..+...++|+.... -++.-|..+.-..|.+.|+.|++.+.+++.++-.-
T Consensus 676 qNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Ydp 755 (1666)
T KOG0985|consen 676 QNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDP 755 (1666)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCH
Confidence 8877766666655555455555556555443 23456677777889999999999998888765431
Q ss_pred ----------------C------------ChhhH------HHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHH----
Q 036290 411 ----------------K------------NITTW------NELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFF---- 452 (796)
Q Consensus 411 ----------------~------------~~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~---- 452 (796)
| |.+.| ...|..|.+.=++...-.+...+.+..+ +....-
T Consensus 756 ErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~ 833 (1666)
T KOG0985|consen 756 ERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLIL 833 (1666)
T ss_pred HHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHH
Confidence 1 11111 1233444444333333333333322211 111111
Q ss_pred ---------HHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHH----------HHHhcCCCCC
Q 036290 453 ---------YVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSF----------EFSNGAERLD 513 (796)
Q Consensus 453 ---------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----------~~~~~~~~~~ 513 (796)
-+..-+-+.+++......++..+..| .-++.++|+|...|...++-.+-. .+=+-..++|
T Consensus 834 ~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRD 912 (1666)
T KOG0985|consen 834 SVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRD 912 (1666)
T ss_pred HHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccC
Confidence 12222334455555556666666677 567788888887776554322110 0000000000
Q ss_pred H-------------------hhHHHHH----HHHHHcCChhH---H--------HHHHHHHHHcCC--CCCHHHHHHHHH
Q 036290 514 M-------------------ASWGAMM----SALVHQGHNHE---A--------VTIFHSLVEAGE--KPDEYILGTILN 557 (796)
Q Consensus 514 ~-------------------~~~~~li----~~~~~~~~~~~---A--------~~~~~~m~~~g~--~p~~~t~~~ll~ 557 (796)
+ ..-|+|. +-+.+..+.+- . .++.+...+.++ ..|+......+.
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 0 0001111 11111111111 1 112222222221 123333333444
Q ss_pred HHhccCchHHHHHHHHHHHHhC--CCCchhHHHHH---------------------------HHHHHhcCCHHHHHHHHh
Q 036290 558 SCAAIGAYQRTKSIHPFVIKLG--FNTEVYVASAV---------------------------IDAYAKCGDIKGARMAFD 608 (796)
Q Consensus 558 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l---------------------------i~~~~~~g~~~~A~~~~~ 608 (796)
++...+-..+-.++++.+.-.+ +.-+...-+.| .......+-+++|..+|+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifk 1072 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFK 1072 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHH
Confidence 4444444444444444333211 10011111111 111112223344444442
Q ss_pred -------------ccCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036290 609 -------------QSFNS-----------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHK 664 (796)
Q Consensus 609 -------------~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 664 (796)
+.+.+ ..+..|..+..+-.+.|...+|.+-|-+. -|...|.-+++.+.+.
T Consensus 1073 kf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1073 KFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc
Confidence 11110 25567888999888888888888777332 2556788999999999
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 036290 665 GLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASE 743 (796)
Q Consensus 665 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (796)
|.|++-.+++..+.++ .-.|... ..|+-+|++.++..+-.+++. .|+.........-|...|.++.|+-++.
T Consensus 1147 ~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred CcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 9999999999877755 5555544 458889999998888766653 3444444444444555555554444443
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.1e-07 Score=96.63 Aligned_cols=350 Identities=13% Similarity=0.089 Sum_probs=199.6
Q ss_pred hcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCccc-HHHHHHHHHHhcccCcHHHHHHHHH
Q 036290 394 RCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVN-GCTFFYVVETCCRSENQQMVGQIHG 472 (796)
Q Consensus 394 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 472 (796)
+.++.++|...++.....+..+...-...+.+.|++++|+++|+.+.+++..-- ...-..++.+-... . ..
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~-~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q-VQ 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h-HH
Confidence 667788888877755555555666666777888888888888888866653321 11112222211110 0 00
Q ss_pred HHHHhCCCCCchhHhHH---HHHHHhcCCcchHHHHHhcCC--------CCC-----Hh-----hHHHHHHHHHHcCChh
Q 036290 473 AIIKTGFSSCGYICSSL---IKSYVNFGQLDNSFEFSNGAE--------RLD-----MA-----SWGAMMSALVHQGHNH 531 (796)
Q Consensus 473 ~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~~~~~ 531 (796)
.+......| ..+|..+ ...+...|++.+|++++.... +.| .. .--.+.-++...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111112122 2244433 344567788888888877661 111 11 1223455667789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH---HHhccCchHH--HHHHHHHH-----------HHhCCCCchhHHHHHHHHHH
Q 036290 532 EAVTIFHSLVEAGEKPDEYILGTILN---SCAAIGAYQR--TKSIHPFV-----------IKLGFNTEVYVASAVIDAYA 595 (796)
Q Consensus 532 ~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~~~li~~~~ 595 (796)
+|.+++....... .+|........+ +...-.++-. +...++.. ......-....-+.++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999998775 555543333222 2222111111 11111111 1110011112222333333
Q ss_pred hcCCHHHHHHHHhccCCCC-ChhHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHH
Q 036290 596 KCGDIKGARMAFDQSFNSN-DVIVYNTLIMAYAH--HGLVSEAMEIFDKMKLANLQPSQ--ATFVSVMSACSHKGLVDKG 670 (796)
Q Consensus 596 ~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A 670 (796)
.+..+.+.++- ..++.. ....+.+++....+ ......+.+++...-+ -.|.. ......+......|+++.|
T Consensus 320 -tnk~~q~r~~~-a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 -TNKMDQVRELS-ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred -hhhHHHHHHHH-HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 34555666665 333332 23444555544322 2346778888877776 34533 4455556677889999999
Q ss_pred HHHHH--------HhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcC
Q 036290 671 CLLFK--------SMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPS-PTVYRSLLSGCRIHG 733 (796)
Q Consensus 671 ~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g 733 (796)
++++. .+. .+.-.+.+...++..+.+.++.+.|.+++.+. ...+. ..+|..++..-.++|
T Consensus 396 ~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 444 33444667777889999988888787777765 11221 234555555567789
Q ss_pred ChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 734 NKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 734 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
+-++|...++++++.+|++....+-|..
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~ 500 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVT 500 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 9999999999999999999888776555
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=6e-08 Score=90.98 Aligned_cols=281 Identities=11% Similarity=0.089 Sum_probs=159.2
Q ss_pred cCChHHHHHHHHhCCCCChhhH---HHHHHHHHhcCCchHHHHHHHHHHhcCCcccH---HHHHHHHHHhcccCcHHHHH
Q 036290 395 CGAVEMAHSVFDNVSYKNITTW---NELLSGYCFNCCDADVLKTFCNIWESGVEVNG---CTFFYVVETCCRSENQQMVG 468 (796)
Q Consensus 395 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~ 468 (796)
+.+.++|.+.|-+|.+.|..++ -+|-+.|-+.|..+.|+++-+.+.++.--+.. ...-.+-.-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 5788999999999998666554 45778899999999999999998875322221 23334556677889999999
Q ss_pred HHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 036290 469 QIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD 548 (796)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 548 (796)
.+|..+.+.+ ..-......|+..|-...+|++|++ +-.++...+-++.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId-------------------------------~A~~L~k~~~q~~ 175 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAID-------------------------------VAERLVKLGGQTY 175 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHH-------------------------------HHHHHHHcCCccc
Confidence 9999998755 2233344445555555555555544 4444443332222
Q ss_pred H----HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C--ChhHHHH
Q 036290 549 E----YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N--DVIVYNT 621 (796)
Q Consensus 549 ~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~ 621 (796)
. ..|+-+........+++.|...++...+.+.+ .+..--.+.+.+...|+++.|.+.++..... | -..+...
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1 12333333334444555555555555444333 3333344555566666666666666222222 1 1234455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc-
Q 036290 622 LIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRN- 700 (796)
Q Consensus 622 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 700 (796)
|..+|.+.|+.++....+.++.+. .+....-..+..--....-.+.|..++.+-. .-+|+...+..+++.....
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql---~r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQL---RRKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHH---hhCCcHHHHHHHHHhhhccc
Confidence 666677777777777777666663 3333333333333233333445555444444 2357766666666655432
Q ss_pred --CChHHHHHHHHhC
Q 036290 701 --GYLEDAKHVIEIM 713 (796)
Q Consensus 701 --g~~~~A~~~~~~~ 713 (796)
|...+-..++++|
T Consensus 330 eeg~~k~sL~~lr~m 344 (389)
T COG2956 330 EEGRAKESLDLLRDM 344 (389)
T ss_pred cccchhhhHHHHHHH
Confidence 3344444444444
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3e-08 Score=98.00 Aligned_cols=212 Identities=14% Similarity=0.128 Sum_probs=148.9
Q ss_pred HhcCCcchHHHHHhcCCCC---CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHH
Q 036290 494 VNFGQLDNSFEFSNGAERL---DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKS 570 (796)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 570 (796)
.-.|+.-.|.+-|+..... +...|--+...|...++.++-...|++..+.. +-++.+|..--+...-.++++.|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3456666666666655542 22236666677788888888888888876654 3344555555555555667777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036290 571 IHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ 648 (796)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 648 (796)
=|+..++.... +...|-.+.-+..+.++++++...|++...+ | .+..|+.....+...++++.|.+.|+..++ +.
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE 492 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LE 492 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hc
Confidence 77777765544 5556666666677888889999998666655 4 667888888889999999999999998887 55
Q ss_pred CC-------HHHH--HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 649 PS-------QATF--VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 649 p~-------~~t~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
|+ ..++ ..++.. .=.+++..|.+++.+.. .+.|. ...|..|.......|+.++|+++|++.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~---e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAI---ELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHH---ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 54 1111 111111 12378899999999888 67777 677888999999999999999999886
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.3e-08 Score=99.51 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036290 585 YVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC 661 (796)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~ 661 (796)
..+..+...+...|++++|.+.+++.+.. .+...+..+...+...|++++|.+.+++..+....| ....+..+...+
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 33444445555555555555555444332 234455566666677777777777777776532222 334455566677
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 036290 662 SHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELG 738 (796)
Q Consensus 662 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 738 (796)
...|++++|...+++... ..|+ ...+..+...+...|++++|.+.+++. .. ..+...+..++..+...|+.++|
T Consensus 146 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 778888888888887763 3444 556777778888888888888887776 22 23445566666777777888888
Q ss_pred HHHHHHHHccCC
Q 036290 739 EWASEKLLLLLP 750 (796)
Q Consensus 739 ~~~~~~~~~~~p 750 (796)
..+.+.+.+..|
T Consensus 223 ~~~~~~~~~~~~ 234 (234)
T TIGR02521 223 QRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhhCc
Confidence 888777766544
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=9.2e-09 Score=96.15 Aligned_cols=236 Identities=13% Similarity=0.059 Sum_probs=165.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036290 519 AMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG 598 (796)
Q Consensus 519 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 598 (796)
.+..+|.+.|.+.+|.+.|+.-..+ .|-+.||..|-.+|.+..+...|..++.+-.+. ++-++....-+.+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3444444445555555444444433 344444444555555555555555544443332 1113333344455666667
Q ss_pred CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290 599 DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKS 676 (796)
Q Consensus 599 ~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 676 (796)
+.++|.++++..++. .++...-++...|.-.++.+-|+.+++++.+.|+. +...|..+.-+|.-.+++|-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 788888888665554 36666777778888899999999999999998875 667788888899999999999999999
Q ss_pred hHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290 677 MDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 677 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
..+- .-.|+ ...|..|.......|++.-|.+-|+-. ...| ....++.|.-.-.+.|+.++|+.++..+....|+-
T Consensus 384 Alst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 384 ALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 8855 45566 677888999999999999999999876 3334 45788999888889999999999999999999975
Q ss_pred CcceEEe
Q 036290 753 DAAHVLL 759 (796)
Q Consensus 753 ~~~~~~l 759 (796)
......|
T Consensus 463 ~E~~~Nl 469 (478)
T KOG1129|consen 463 AEVTTNL 469 (478)
T ss_pred cccccce
Confidence 5544433
No 70
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=1e-05 Score=84.23 Aligned_cols=461 Identities=14% Similarity=0.117 Sum_probs=252.7
Q ss_pred cCChhHHHHHhcccCC-CCcc-hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHH
Q 036290 92 CGYFGWGLRVFDEMAE-RNLV-SWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHC 169 (796)
Q Consensus 92 ~g~~~~A~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 169 (796)
.|+++.|...++.... |+.. .|-.+-..-..+|+..-|.+.| +..|++..++.+|+
T Consensus 457 ~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lhd 514 (1636)
T KOG3616|consen 457 DGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLHD 514 (1636)
T ss_pred cCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 3566666655554322 3332 3444444444445444444333 33455555555554
Q ss_pred HHH-------HhcC-CCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 036290 170 FAL-------KIRI-EKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEG 241 (796)
Q Consensus 170 ~~~-------~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 241 (796)
... +-|- ..+.+-..+++.++.+ ++.+|+.+|-+-. .-..-|..|....++++|+.+-+.. |
T Consensus 515 ~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~ 584 (1636)
T KOG3616|consen 515 ILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---G 584 (1636)
T ss_pred HHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---C
Confidence 332 1222 2233334444444443 5667777763321 1123445555556666666654432 2
Q ss_pred CCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcC--CCCcchHHHHH
Q 036290 242 ITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMA--DKDVISWNTLF 319 (796)
Q Consensus 242 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li 319 (796)
.+.=...-.+.++++...|+-+.|-++- .+..---+.|..|.+.|....|.+....-. ..|......+.
T Consensus 585 ~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia 655 (1636)
T KOG3616|consen 585 HPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIA 655 (1636)
T ss_pred ChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHH
Confidence 2222222234455555555554443331 111122456788888888877766543221 23555666667
Q ss_pred HHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCh
Q 036290 320 GGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVT-SSLIYMFCRCGAV 398 (796)
Q Consensus 320 ~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~g~~ 398 (796)
.++.+..-+++|-++|+++.. +...+.++.+..-+.+|.++-+.. ++...+.. ..--..+...|++
T Consensus 656 ~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~ 722 (1636)
T KOG3616|consen 656 AALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQL 722 (1636)
T ss_pred HHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhH
Confidence 777777777888888877642 122333333333344444332221 11111111 1222334445666
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhC
Q 036290 399 EMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTG 478 (796)
Q Consensus 399 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 478 (796)
+.|..-|-+.. ..-..+.+......|.+|+.+++.++... .-..-|..+..-|+..|+++.|+++|-+.
T Consensus 723 daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---- 791 (1636)
T KOG3616|consen 723 DAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---- 791 (1636)
T ss_pred HHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----
Confidence 66665554322 12233455667788888888888887643 22334666777788888888888887643
Q ss_pred CCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290 479 FSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD--MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL 556 (796)
Q Consensus 479 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 556 (796)
..++--|.+|.+.|+|++|.++-.+...|. ...|-+-..-+-++|++.+|.+++-.+. .|+. .|
T Consensus 792 -----~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----ai 857 (1636)
T KOG3616|consen 792 -----DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AI 857 (1636)
T ss_pred -----chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HH
Confidence 345667888889999998888877766653 3445555666777888888887775542 4542 45
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHH
Q 036290 557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAM 636 (796)
Q Consensus 557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 636 (796)
..|-+.|..+...++...-.. ..-..+...+..-|...|++..|..-|-+ ..-|.+-+..|...+-|++|.
T Consensus 858 qmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~fle------a~d~kaavnmyk~s~lw~day 928 (1636)
T KOG3616|consen 858 QMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLE------AGDFKAAVNMYKASELWEDAY 928 (1636)
T ss_pred HHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHh------hhhHHHHHHHhhhhhhHHHHH
Confidence 667777777777666554322 11223444566667778888888776622 223566666777777777776
Q ss_pred HHHH
Q 036290 637 EIFD 640 (796)
Q Consensus 637 ~~~~ 640 (796)
++-+
T Consensus 929 riak 932 (1636)
T KOG3616|consen 929 RIAK 932 (1636)
T ss_pred HHHh
Confidence 5543
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=7.8e-08 Score=93.90 Aligned_cols=194 Identities=10% Similarity=0.074 Sum_probs=146.1
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290 514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA 593 (796)
Q Consensus 514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 593 (796)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.++...+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3456666777777888888888888776542 334556666777778888888888888877776543 45567777888
Q ss_pred HHhcCCHHHHHHHHhccCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH
Q 036290 594 YAKCGDIKGARMAFDQSFNSN----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVD 668 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 668 (796)
+...|++++|.+.+++.+..+ ....+..+...+...|++++|...+++..+ ..| +...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHH
Confidence 888888888888887666532 345667778888899999999999999887 445 4567778888888999999
Q ss_pred HHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 669 KGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 669 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+|...+++.... ...++..+..++..+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988744 2334666777888888899999998887765
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=2.3e-07 Score=96.82 Aligned_cols=201 Identities=15% Similarity=0.146 Sum_probs=129.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290 519 AMMSALVHQGHNHEAVTIFHSLVEA---GEKPDE----YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVI 591 (796)
Q Consensus 519 ~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 591 (796)
.+...|...+++.+|..+|+++... ..-++. .+++.|-.+|.+.|++++|...++...+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-------------- 311 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-------------- 311 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------
Confidence 3556777788888888888887432 111221 2333334445555555555555443322
Q ss_pred HHHHhcCCHHHHHHHHhccCC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHH
Q 036290 592 DAYAKCGDIKGARMAFDQSFN--SNDV-IVYNTLIMAYAHHGLVSEAMEIFDKMKLA---NLQPS----QATFVSVMSAC 661 (796)
Q Consensus 592 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~~~ 661 (796)
+++.... .+.+ ..++.++..++..+++++|..+++...+. -..++ ..+++.|...|
T Consensus 312 --------------I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 312 --------------IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred --------------HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 1111000 0122 12444555666677777777766655431 11222 35688899999
Q ss_pred hccCCHHHHHHHHHHhHhhc-----CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCH-HHHHHHH
Q 036290 662 SHKGLVDKGCLLFKSMDSQY-----GMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSP-TVYRSLL 726 (796)
Q Consensus 662 ~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~ 726 (796)
...|++++|.++++++.+.. +..+. ...++.|...|.+.+++.+|.++|.+. +..|+. .+|..|.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 99999999999999887542 12222 566788899999999999999998876 233444 6789999
Q ss_pred HHHHhcCChHHHHHHHHHHHc
Q 036290 727 SGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~~~~ 747 (796)
..|...|+++.|.++.+++..
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999998884
No 73
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=2.2e-05 Score=83.03 Aligned_cols=469 Identities=10% Similarity=0.024 Sum_probs=231.1
Q ss_pred CCchhhHHHHH--HHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC-C--------CCCCc
Q 036290 77 NDIFLQNNLIA--MYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTN-G--------FMPNE 145 (796)
Q Consensus 77 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~ 145 (796)
-|..+-.++++ .|.-.|+.+.|.+..+-++. -..|..|.+-|.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45566666665 56678999999887776643 357999999999988888888777777442 1 1122
Q ss_pred ccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCC-ceeHHHHHHHHHhC
Q 036290 146 FAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDD-VGCWNAMIGGYAHC 224 (796)
Q Consensus 146 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~ 224 (796)
.+=..+.-.....|.+++|+.++.+-.+.. .|=+.|-..|.+++|.++-+.-.+-. ..||..-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 111111122236788888888888877643 34456777899999988876543321 22455555555667
Q ss_pred CCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHH
Q 036290 225 GYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVF 304 (796)
Q Consensus 225 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 304 (796)
++.+.|++.|++-.. |-...+..|. .++...++.... ..|...|.---..+-..|+++.|+.++
T Consensus 872 ~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHH
Confidence 788888888876421 1111111111 011111111111 112233333333334456666666666
Q ss_pred hhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhC--CCC--
Q 036290 305 ERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCG--FLD-- 380 (796)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~-- 380 (796)
....+ |-.+++..|-.|+.++|-++-++- -|....-.+-+.|-..|++.+|...|-..+... +..
T Consensus 936 ~~A~D-----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen 936 SSAKD-----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred HHhhh-----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55332 445555555566666665555441 233333445555555566666655554443210 000
Q ss_pred chhHHHHHHHHH--HhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH--------HHhcCC--cccH
Q 036290 381 EENVTSSLIYMF--CRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCN--------IWESGV--EVNG 448 (796)
Q Consensus 381 ~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~~g~--~p~~ 448 (796)
....-..|.... ....+.-.|-+.|++.. .-....+..|.+.|.+.+|+++--+ +...++ ..|+
T Consensus 1005 End~~d~L~nlal~s~~~d~v~aArYyEe~g----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1005 ENDMKDRLANLALMSGGSDLVSAARYYEELG----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred hcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 000000111111 11122233344444433 1122234456667777776665322 122222 2344
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC-----CCH----hhHHH
Q 036290 449 CTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER-----LDM----ASWGA 519 (796)
Q Consensus 449 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~ 519 (796)
...+..-.-++...+++.|..++....+.. --+. +|+..+..-..++-+.|.. ++. .....
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~---------~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFS---------GALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------HHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 455555555566666666666665544321 1111 2222233333333333321 222 23445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHH-------------HHHHHHhCCCCchhH
Q 036290 520 MMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSI-------------HPFVIKLGFNTEVYV 586 (796)
Q Consensus 520 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~-------------~~~~~~~~~~~~~~~ 586 (796)
+...|.+.|.+..|-+-|.+.-++ ...++++.+.|+.++..-+ -+.+.......++.+
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~ 1221 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQT 1221 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHH
Confidence 566677777777776666543211 1234555555554432111 112223344455555
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 036290 587 ASAVIDAYAKCGDIKGARMAF 607 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~ 607 (796)
...++..|.+..-++.--.+|
T Consensus 1222 mK~I~tFYTKgqafd~LanFY 1242 (1416)
T KOG3617|consen 1222 MKDIETFYTKGQAFDHLANFY 1242 (1416)
T ss_pred HhhhHhhhhcchhHHHHHHHH
Confidence 555555555554444444444
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=8.4e-08 Score=85.94 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=144.0
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290 557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE 634 (796)
Q Consensus 557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 634 (796)
-.|...|+...|..-+++..+.... +..++..+...|.+.|+.+.|.+.|+..+.. .+-...|.....+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 3445555555555555555554433 5566677777778888888888888766654 366677777788888888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHh
Q 036290 635 AMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEI 712 (796)
Q Consensus 635 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (796)
|...|++....-.-| -..||..+..+..+.|+.+.|..+|++.. ...|+ +.....+.+...+.|++..|..+++.
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL---ELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH---HhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 888888887643223 34578777777788899999999998887 55677 77788888889999999999988888
Q ss_pred C--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 713 M--PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 713 ~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
. ...++.......|..-...||...+-+.-..+.+..|.....
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 7 344677777777777788899888888888888888876654
No 75
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.98 E-value=1.5e-05 Score=86.22 Aligned_cols=355 Identities=11% Similarity=0.047 Sum_probs=197.5
Q ss_pred HHHHHHHhCC---CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Q 036290 400 MAHSVFDNVS---YKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIK 476 (796)
Q Consensus 400 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 476 (796)
.|...+.... ..+...||.|--. ...|.+.-+...|-+-... .+....+|..+--.+....+++.|...+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 4444444433 2455666665444 4445555555554443332 233445666666667777888888888877766
Q ss_pred hCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCC-----C---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHH------
Q 036290 477 TGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAE-----R---LDMASWGAMMSALVHQGHNHEAVTIFHSLVE------ 542 (796)
Q Consensus 477 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~------ 542 (796)
.. |.+...+--........|+.-++..+|..-. + ++..-|-....-...+|+.++-+....++-.
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 54 4444444444444556666666666665421 1 2333333333333455555544333332211
Q ss_pred ---cCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCchhHHH----HHHHHHHhcCCHHHHHHHHhccCCCC
Q 036290 543 ---AGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIK-LGFNTEVYVAS----AVIDAYAKCGDIKGARMAFDQSFNSN 614 (796)
Q Consensus 543 ---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~ 614 (796)
.|.+-+...|..........+.+..+.+...+++. .....+...|+ ...+.++..|.++.|..-+...-..-
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence 13344556666666666666666666666555443 11122333333 34566777888888877762222222
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP---SQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCY 690 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 690 (796)
+...-..-+.. .-.|+++++++.|++... +.- +. .....++.+....+.-+.|...+-+.... -.|+....
T Consensus 1038 dEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l--s~~~~~sl 1112 (1238)
T KOG1127|consen 1038 DEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL--SKVQASSL 1112 (1238)
T ss_pred HHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh--CccchhhH
Confidence 33333333333 335789999999999876 332 22 23444555666778888888877777633 34555555
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC---C----CCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHccCCCCCcceEEecCh
Q 036290 691 GCLVDMLSRNGYLEDAKHVIEIM---P----FQPSPTVYRSLLSG-CRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKR 762 (796)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~---~----~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 762 (796)
..|.-.+.-..+-.......++. . +.-++. .++.. +.+.|+-...++.+++.+-.+|.++..|.+|++|
T Consensus 1113 l~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~---ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vr 1189 (1238)
T KOG1127|consen 1113 LPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG---LLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVR 1189 (1238)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh---HHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 55555444433333333333333 1 111111 12222 5678999999999999999999999999999874
Q ss_pred hhH
Q 036290 763 KRQ 765 (796)
Q Consensus 763 ~~~ 765 (796)
.+.
T Consensus 1190 ya~ 1192 (1238)
T KOG1127|consen 1190 YAQ 1192 (1238)
T ss_pred HHH
Confidence 333
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=3.9e-05 Score=78.58 Aligned_cols=366 Identities=12% Similarity=0.118 Sum_probs=185.3
Q ss_pred cCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCc-chHHHHHHHhcccCChHHHHHHHH
Q 036290 293 KSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNH-VTFSILLRQCGKLLDLDLGLQLQC 371 (796)
Q Consensus 293 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~ 371 (796)
+.+..++|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++..--. ..-..++.+-.. ... .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-H
Confidence 5677777777777555545445555566677788888888888888666432211 111111111100 000 0
Q ss_pred HHHHhCCCCchhHH---HHHHHHHHhcCChHHHHHHHHhC--------CCCC-----hh-----hHHHHHHHHHhcCCch
Q 036290 372 LALHCGFLDEENVT---SSLIYMFCRCGAVEMAHSVFDNV--------SYKN-----IT-----TWNELLSGYCFNCCDA 430 (796)
Q Consensus 372 ~~~~~g~~~~~~~~---~~ll~~~~~~g~~~~A~~~~~~~--------~~~~-----~~-----~~~~li~~~~~~g~~~ 430 (796)
.+......| ..+| -.....++..|++.+|+++++.. .+.| +. .--.+.-.+-..|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222222 2223 23344566778888888888766 1111 11 1223444566689999
Q ss_pred HHHHHHHHHHhcCCcccHHH---HHHHHHHhcccCcHHH--HHHHHHHH-----------HHhCCCCCchhHhHHHHHHH
Q 036290 431 DVLKTFCNIWESGVEVNGCT---FFYVVETCCRSENQQM--VGQIHGAI-----------IKTGFSSCGYICSSLIKSYV 494 (796)
Q Consensus 431 ~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~ 494 (796)
+|..++....... .+|... +..=|.+.....++.. +...++.. ....-.-...--+.++..|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999998888764 233322 2111222222222111 11111111 0000000011112233333
Q ss_pred hcCCcchHHHHHhcCCCCC-HhhHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCchHHHH
Q 036290 495 NFGQLDNSFEFSNGAERLD-MASWGAMMSALV--HQGHNHEAVTIFHSLVEAGEKPDE--YILGTILNSCAAIGAYQRTK 569 (796)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~ 569 (796)
.+..+.+.++........ ...+..++.... +...+.++.+++...-+. .|.. ...-..+......|+++.|.
T Consensus 320 -tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred -hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 344555666665555422 233334443322 223466777777766554 3333 34444555667788888888
Q ss_pred HHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------CC--ChhHHHHHHHHHHhcCCh
Q 036290 570 SIHP--------FVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN-------SN--DVIVYNTLIMAYAHHGLV 632 (796)
Q Consensus 570 ~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~ 632 (796)
+++. .+.+.+. .+.+..+++..+.+.++-+.|..++.+.+. .. -..++.-+...-.+.|+-
T Consensus 397 ~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 8887 3333333 345566677777777766555555533332 11 122333344444566778
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290 633 SEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKS 676 (796)
Q Consensus 633 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 676 (796)
++|..+++++.+.+ .+|..+...++.+|++.. .+.|..+-..
T Consensus 475 ~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 475 EEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 88888888877731 236667777777777653 6666655443
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.95 E-value=1.5e-05 Score=82.41 Aligned_cols=388 Identities=11% Similarity=0.040 Sum_probs=180.0
Q ss_pred HHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 036290 322 FSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMA 401 (796)
Q Consensus 322 ~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 401 (796)
+...|+.++|.+..+.-.... .-+.++|..+--......++++|.+.|....+.+ +.|..++..+.-.-++.++++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 344456666666555544322 1123344444334444555666666666555543 33445555444444555555544
Q ss_pred HHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcC-CcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 036290 402 HSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESG-VEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT 477 (796)
Q Consensus 402 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 477 (796)
........+ .....|..+..++.-.|+...|..++++..+.. -.|+...|.....-+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~----------------- 191 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ----------------- 191 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-----------------
Confidence 444333332 233345555555555555555555555554433 13343333322211111
Q ss_pred CCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--CCHhhH-HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 036290 478 GFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--LDMASW-GAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGT 554 (796)
Q Consensus 478 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ 554 (796)
.....+.|..+.|.+.+..... -|-..+ ..-..-+.+.++.++|..++..+... .||..-|..
T Consensus 192 ------------n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 192 ------------NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYE 257 (700)
T ss_pred ------------HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHH
Confidence 1122344445555544444332 111111 12233445556666666666666554 455555544
Q ss_pred HHHHHh-cc-CchHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc
Q 036290 555 ILNSCA-AI-GAYQRTKSIHPFVIKLGFN---TEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH 629 (796)
Q Consensus 555 ll~~~~-~~-~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 629 (796)
.+..+. +. +..+....++....+.-.. |-.... .......-.+..-+++...+..+-+.++..+...|-..
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p 333 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDP 333 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhch
Confidence 444333 12 2222222333333321111 100000 00000111122222333333333333333333333322
Q ss_pred CChHHHHHHHHHHHH----CC----------CCCCHHH--HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 630 GLVSEAMEIFDKMKL----AN----------LQPSQAT--FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 630 g~~~~A~~~~~~m~~----~g----------~~p~~~t--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
...+-..++.-.+.. .| -+|.... +-.++..+-+.|+++.|..+++... +..|+ ++.|..
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~ 410 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLV 410 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHH
Confidence 221111111111110 00 1344433 3445667777888888888888777 66777 677777
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIMP-F-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 749 (796)
-.+.+...|++++|..++++.. + .||..+-..-+.-..+.++.++|..+..+-.+..
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 7788888888888888888773 2 3444433344445567777888877776655543
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=5.4e-06 Score=78.88 Aligned_cols=95 Identities=16% Similarity=0.298 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCC---ChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc
Q 036290 589 AVIDAYAKCGDIKGARMAFDQSFNSN---DVIVYNT-LIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM-SACSH 663 (796)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~ 663 (796)
.+.++++..|.+.+|.++| -.+..| |..+|.+ |.++|.+.++++.|+.++-++ +-+.+..+...+| +-|.+
T Consensus 398 N~AQAk~atgny~eaEelf-~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELF-IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHH-hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHH
Confidence 3556666666666666666 333332 4444443 345666677776665544332 2222333333333 55666
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHH
Q 036290 664 KGLVDKGCLLFKSMDSQYGMQPSPDCY 690 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~~p~~~~~ 690 (796)
.+.+=-|-+.|+.+. ...|+++.|
T Consensus 474 ~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHHHHHhhhHHH---ccCCCcccc
Confidence 676666666676665 456666665
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=7.1e-06 Score=84.70 Aligned_cols=459 Identities=12% Similarity=0.068 Sum_probs=243.0
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCC---CCceeHHHHHHHHHhCCCchHHHHHH
Q 036290 158 MGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISS---DDVGCWNAMIGGYAHCGYGFEALNVV 234 (796)
Q Consensus 158 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 234 (796)
.+....+..+.+.+.+ +.+-...+.....-.+...|+-++|......-.. .+.++|..+--.+....++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3444444444454444 2222222222222234455777777777665443 35667887777777778888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CC
Q 036290 235 SSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KD 311 (796)
Q Consensus 235 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 311 (796)
...... .||.. .++.-|--.-++-|+++.....-....+ ..
T Consensus 99 ~nAl~~--~~dN~----------------------------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 99 RNALKI--EKDNL----------------------------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHhc--CCCcH----------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 887653 23322 1122222222223333333322222221 24
Q ss_pred cchHHHHHHHHHhCCCccHHHHHHHHHHHcCC-CCCcchHHHHHHH------hcccCChHHHHHHHHHHHHhCCCCchhH
Q 036290 312 VISWNTLFGGFSENKNPGQTASLFHKFILSGS-RPNHVTFSILLRQ------CGKLLDLDLGLQLQCLALHCGFLDEENV 384 (796)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 384 (796)
...|..+..++.-.|+...|..++++..+... .|+...|...... ....|.++.|.+.+..-... +......
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~ 221 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAF 221 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHH
Confidence 46788888888889999999999999877653 5666666544332 24566677776665543332 1112222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--CChhhHHHHHHHHH-hcCCchHHH-HHHHHHHhcCCcccHHHHHHHHHHhcc
Q 036290 385 TSSLIYMFCRCGAVEMAHSVFDNVSY--KNITTWNELLSGYC-FNCCDADVL-KTFCNIWESGVEVNGCTFFYVVETCCR 460 (796)
Q Consensus 385 ~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~-~~g~~~~a~-~~~~~m~~~g~~p~~~t~~~ll~~~~~ 460 (796)
-..-...+.+.+++++|..++..+.. ||...|...+..+. +-.+..+++ .+|....+. .+.....-..-++....
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNG 300 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCc
Confidence 23445667788899999999888875 55555555444333 333333444 555555442 11111111111222223
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 036290 461 SENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSL 540 (796)
Q Consensus 461 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 540 (796)
..-.+...+++..+.+.|+++- +..+...|-.-...+ ....++..|...-.........+.-
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~---------------~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVA---------------FLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhH---------------HHHHHHHHHHhhcccccCCCccccc
Confidence 3334555566777777776653 233333322111110 1111112221111111000000000
Q ss_pred HHcCCCCCHHH--HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCCh
Q 036290 541 VEAGEKPDEYI--LGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN--SNDV 616 (796)
Q Consensus 541 ~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~ 616 (796)
. .-+|.... +-.+...+-..|+++.|..+++..+.+-+. -+..|..-.+.+...|++++|...+++..+ .+|.
T Consensus 363 ~--~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 363 K--QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred c--cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 0 01344433 334555666777777777777766654322 233455556777888888888888854333 3455
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--------HHHH--HHHHhccCCHHHHHHHHHHhH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT--------FVSV--MSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~l--l~~~~~~g~~~~A~~~~~~~~ 678 (796)
..-.--.....+.++.++|.++.......|. +... |-.+ ..+|.+.|++..|++-|..+.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 5555666777788888888888888877764 2211 1111 246777888888877666655
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=1.8e-06 Score=91.59 Aligned_cols=284 Identities=11% Similarity=0.055 Sum_probs=163.9
Q ss_pred HHHHHhcCChHHHHHHHHhCCC--CCh-hhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhc----c-
Q 036290 389 IYMFCRCGAVEMAHSVFDNVSY--KNI-TTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCC----R- 460 (796)
Q Consensus 389 l~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~- 460 (796)
...+...|++++|++.+++-.. .|. .........+.+.|+.++|..+++.+.+. .|+...|-..+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 3445677888888888876553 333 34555667777888888888888888774 466666555444443 1
Q ss_pred -cCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCCh-hHHHHHHH
Q 036290 461 -SENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHN-HEAVTIFH 538 (796)
Q Consensus 461 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~ 538 (796)
..+.+...++++.+.+.- |......-+ .-.+.....+ ..+...+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl-------------------------------~L~~~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRL-------------------------------PLDFLEGDEFKERLDEYLR 135 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHh-------------------------------hcccCCHHHHHHHHHHHHH
Confidence 123444555555543332 111111111 0001111111 23344455
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHh----C----------CCCchh--HHHHHHHHHHhcCCHHH
Q 036290 539 SLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKL----G----------FNTEVY--VASAVIDAYAKCGDIKG 602 (796)
Q Consensus 539 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~ 602 (796)
.+..+|+++ +|..+-..|......+...+++...... + -+|+.. ++..+...|...|++++
T Consensus 136 ~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 136 PQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred HHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 556666443 3344444444444444455555444321 1 123332 33455677778888888
Q ss_pred HHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290 603 ARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 603 A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 679 (796)
|+++++..+.. | .+..|..-.+.+.+.|++.+|.+.++..+. +.+ |...-+-....+.+.|++++|.+++....+
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 88888767765 4 456777777888888888888888888877 555 555555556667778888888888877764
Q ss_pred hcCCCCCchH--------HHHHHHHHHhcCChHHHHHHHHhC
Q 036290 680 QYGMQPSPDC--------YGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 680 ~~~~~p~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
. +..|.... ....+.+|.+.|++..|++.|...
T Consensus 291 ~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 291 E-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred C-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4 44343211 134466778888888887766554
No 81
>PRK12370 invasion protein regulator; Provisional
Probab=98.93 E-value=1.4e-07 Score=103.65 Aligned_cols=178 Identities=14% Similarity=0.028 Sum_probs=108.0
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 036290 563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFD 640 (796)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~ 640 (796)
++++.|...++...+.+.. +...+..+...+...|++++|...+++.+.. | +...+..+...+...|++++|...++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3456666666666665544 4555666666677777777777777655543 2 45566667777777777777777777
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036290 641 KMKLANLQPSQA-TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP 717 (796)
Q Consensus 641 ~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 717 (796)
+..+ +.|+.. .+..++..+...|++++|...++++... ..|+ +..+..+..++...|+.++|.+.++++ ...|
T Consensus 397 ~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 397 ECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 7777 455432 2233344455567777777777776533 1343 444566677777777777777777766 3344
Q ss_pred CHH-HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 718 SPT-VYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 718 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
+.. .++.+...+...|+ .|...++.+++
T Consensus 473 ~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred hhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 433 33444444555553 56666665554
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=8.3e-05 Score=78.80 Aligned_cols=266 Identities=12% Similarity=0.078 Sum_probs=139.3
Q ss_pred hcccCCCCcchHHHHHH--HHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhc----
Q 036290 102 FDEMAERNLVSWTLIVS--AAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIR---- 175 (796)
Q Consensus 102 ~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g---- 175 (796)
|-....-|..|..+|+. -|.--|+.+.|.+-.+-.. +...|..+.+-|.+..+++-|.-.+..|....
T Consensus 718 Fvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA 791 (1416)
T KOG3617|consen 718 FVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA 791 (1416)
T ss_pred hcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH
Confidence 33344567778888876 3677889998888777664 44568888888888888888877776664321
Q ss_pred ----CCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHH
Q 036290 176 ----IEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFIN 251 (796)
Q Consensus 176 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 251 (796)
.+.+...-..+.-.-...|.+++|+.++.+-.+ |..|=..|-..|.+++|+++-+.-.+-.+ ..||..
T Consensus 792 lR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~ 863 (1416)
T KOG3617|consen 792 LRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN 863 (1416)
T ss_pred HHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence 011111111111222344666666666655443 22333445556666666666554322111 223333
Q ss_pred HHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHH
Q 036290 252 ALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQT 331 (796)
Q Consensus 252 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (796)
-..-+-..+|.+.|.+.|+......+ .+.. ++ ..++....++.+++.++....| ....+-..|+.+.|
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~haf----ev~r-mL-----~e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaA 931 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAF----EVFR-ML-----KEYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAA 931 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHH----HHHH-HH-----HhChHHHHHHHHhccchHHHHH--HHHHHhcccchHHH
Confidence 34444445555555555553211110 0111 11 1123334444444444433332 22233345677777
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 332 ASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNV 408 (796)
Q Consensus 332 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 408 (796)
+.+|...+. |-.+++..|-.|+.++|-++-++ .-|....-.|.+.|-..|++.+|..+|.+.
T Consensus 932 l~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 932 LSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777766542 34555566666776666665443 223334445666666666666666666544
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=6.2e-07 Score=89.99 Aligned_cols=218 Identities=10% Similarity=-0.039 Sum_probs=143.6
Q ss_pred ChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 036290 529 HNHEAVTIFHSLVEAG-EKPD--EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARM 605 (796)
Q Consensus 529 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 605 (796)
..+.++.-+.++.... ..|+ ...|...-..+...|+.+.|...++...+.... +...++.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455566665555432 1222 233555555667777777777777777776543 56788888888899999999998
Q ss_pred HHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC
Q 036290 606 AFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM 683 (796)
Q Consensus 606 ~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 683 (796)
.|+..+.. | +...|..+...+...|++++|.+.+++..+ ..|+..........+...++.++|...+++.... .
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--L 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--C
Confidence 88776653 3 567788888888899999999999999988 5675432222222344567899999999765522 3
Q ss_pred CCCchHHHHHHHHHHhcCChHHH--HHHHHhC-C----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 684 QPSPDCYGCLVDMLSRNGYLEDA--KHVIEIM-P----FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 684 ~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
.|+...+ .+... ..|+..++ .+.+.+. . ..| ....|..+...+.+.|+.++|+..|+++++.+|.+..
T Consensus 196 ~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3433222 23333 34554433 3333322 1 112 2357888999999999999999999999999974433
No 84
>PRK12370 invasion protein regulator; Provisional
Probab=98.89 E-value=4e-07 Score=100.21 Aligned_cols=119 Identities=11% Similarity=-0.013 Sum_probs=48.6
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CC-hhHHHHHHHHHHhcCChHHH
Q 036290 558 SCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-ND-VIVYNTLIMAYAHHGLVSEA 635 (796)
Q Consensus 558 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A 635 (796)
.+...|++++|...+++..+.++. +...+..+..++...|++++|...+++.+.. |+ ...+..++..+...|++++|
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHH
Confidence 333344444444444444433322 2233334444444444444444444333332 21 11122222233334555555
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 636 MEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 636 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
...+++..+.. .|+ ...+..+..++...|++++|...++++.
T Consensus 426 ~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 426 IRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55555544321 232 2223334444445555555555555443
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=8.9e-08 Score=89.71 Aligned_cols=227 Identities=10% Similarity=0.078 Sum_probs=178.0
Q ss_pred HhHHHHHHHhcCCcchHHHHHhcCCC--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhcc
Q 036290 486 CSSLIKSYVNFGQLDNSFEFSNGAER--LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILG-TILNSCAAI 562 (796)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~ 562 (796)
-+-+.++|.+.|.+.+|.+.|+...+ |-+.||-.+-.+|.+..++..|+.++.+-.+. .|-.+||. ...+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 35678888899999999888887654 67788888888999999999999999887765 56555553 455567778
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHH
Q 036290 563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFD 640 (796)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~ 640 (796)
++.+.+.++++...+.... ++....++...|.-.++++-|+.+++..+.- .+...|+.+.-+|.-.+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8888999999888775433 5555666667777788999999988655543 478888888888999999999999999
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036290 641 KMKLANLQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ 716 (796)
Q Consensus 641 ~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 716 (796)
+....--.|+. ..|-.+-......|++..|.+.|+-.. --.|+ ...++.|.-.-.+.|++++|..+++.. .+.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL---~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL---TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh---ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 98876555644 347777777788999999999998887 33555 788999999999999999999999988 345
Q ss_pred CC
Q 036290 717 PS 718 (796)
Q Consensus 717 p~ 718 (796)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 55
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.7e-05 Score=77.35 Aligned_cols=286 Identities=10% Similarity=0.031 Sum_probs=168.1
Q ss_pred cCCchHHHHHHHHHHhcC-CcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHH
Q 036290 426 NCCDADVLKTFCNIWESG-VEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFE 504 (796)
Q Consensus 426 ~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 504 (796)
.++...+...+-.+.... ++-|......+...+...|+.+++...|+...-.+ +-+........-.+...|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 444444444443333322 33344455555555556666666666655544332 2222222223333445555555544
Q ss_pred HHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290 505 FSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN 581 (796)
Q Consensus 505 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 581 (796)
+...+.. .....|-.-...+...++++.|+.+-++-++.. +.+...|..--..+...++.+.|.-.|+..+...+.
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 4433332 223334444445555677777777777665432 222233333334556677777777777766654432
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 036290 582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLI-MAYA-HHGLVSEAMEIFDKMKLANLQPSQ-ATFVS 656 (796)
Q Consensus 582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 656 (796)
+...|.-|+..|...|++.+|..+-...+.. .+..+...+. ..+. ...--++|.++++.-.. +.|+. ...+.
T Consensus 367 -rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 367 -RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNL 443 (564)
T ss_pred -hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHH
Confidence 6677888888888888888876655333332 1222222221 1111 11224778888888777 67854 34666
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290 657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP 719 (796)
Q Consensus 657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 719 (796)
+...|...|..+.++.+++... ...||....+.|.+.+.....+++|++.|... ...|+.
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L---~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHL---IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHH---hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 7778889999999999999888 56899999999999999999999999998876 556643
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.86 E-value=2.3e-06 Score=89.58 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=108.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhc-----C-Cccc-HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHH
Q 036290 418 ELLSGYCFNCCDADVLKTFCNIWES-----G-VEVN-GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLI 490 (796)
Q Consensus 418 ~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 490 (796)
.+...|...+++++|..+|+++... | ..|. ..+++.|-.+|.+.|++++|...++...+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-------------- 311 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-------------- 311 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------
Confidence 4556677777777777777776542 1 1111 22333334444444554444444433322
Q ss_pred HHHHhcCCcchHHHHHhcCC---CCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccC
Q 036290 491 KSYVNFGQLDNSFEFSNGAE---RLDMA-SWGAMMSALVHQGHNHEAVTIFHSLVEA---GEKPDEYILGTILNSCAAIG 563 (796)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~ 563 (796)
+++... .+.+. .++.+...++..+++++|..+++...+. -..++..
T Consensus 312 --------------I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~------------- 364 (508)
T KOG1840|consen 312 --------------IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV------------- 364 (508)
T ss_pred --------------HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch-------------
Confidence 111110 11222 3455666777788888888888755321 1111110
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----------CChhHHHHHHHHHHhcCChH
Q 036290 564 AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----------NDVIVYNTLIMAYAHHGLVS 633 (796)
Q Consensus 564 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~ 633 (796)
.-..+++.|...|...|++++|.+++++.+.. ..-..++.|...|.+.++++
T Consensus 365 ------------------~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 365 ------------------NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred ------------------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 02234455555555555555555555443321 12345666677777777777
Q ss_pred HHHHHHHHHH----HCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 634 EAMEIFDKMK----LANLQ-P-SQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 634 ~A~~~~~~m~----~~g~~-p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
+|.++|.+.. ..|.. | ...+|..|...|...|+++.|.++.+.+.
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7777666543 33322 3 23557788888888888888888877765
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=1.1e-06 Score=79.06 Aligned_cols=201 Identities=12% Similarity=0.066 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036290 516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYA 595 (796)
Q Consensus 516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 595 (796)
+...+.-+|.+.|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+.|+...+.... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34556678889999999999999988763 344567777888889999999999999988887665 7778889999999
Q ss_pred hcCCHHHHHHHHhccCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 036290 596 KCGDIKGARMAFDQSFNSN----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKG 670 (796)
Q Consensus 596 ~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A 670 (796)
..|++++|...|++.+..| -..+|..+.-+..+.|+++.|.+.|++..+ ..| ...+...+.+.....|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999887 456888888889999999999999999999 666 556778888889999999999
Q ss_pred HHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 036290 671 CLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVY 722 (796)
Q Consensus 671 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 722 (796)
..+++..... ..++...+...|+.-.+.|+-+.|-++=..+ ..-|...-|
T Consensus 193 r~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999855 3388888888889999999998888776665 344554443
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=5.8e-05 Score=79.88 Aligned_cols=423 Identities=12% Similarity=0.066 Sum_probs=219.5
Q ss_pred cCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHH
Q 036290 276 EVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSI 352 (796)
Q Consensus 276 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ 352 (796)
.+.-|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..+...|....|+.+++.-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3566888888888889999999999999988764 3556788888889999999999999888665443454443333
Q ss_pred HHH-Hh-cccCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc-----------CChHHHHHHHHhCCCC---C
Q 036290 353 LLR-QC-GKLLDLDLGLQLQCLALHC--GF--LDEENVTSSLIYMFCRC-----------GAVEMAHSVFDNVSYK---N 412 (796)
Q Consensus 353 ll~-~~-~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~---~ 412 (796)
+.. .| .+.+..+++..+-...... |. ......|-.+--+|... ....++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 332 22 2345566665555444431 10 11122222222222211 0112233333333221 1
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh-CCCCCchhHhHHHH
Q 036290 413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT-GFSSCGYICSSLIK 491 (796)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 491 (796)
...--.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+...+. |. |-.....-++
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 11111112223344555555555555555444444445554444555555555555555444331 11 1111111111
Q ss_pred HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCchHHHH
Q 036290 492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKP--DEYILGTILNSCAAIGAYQRTK 569 (796)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~ 569 (796)
.-...++.+++......+.. .|... ......++-...++....+.-.--+| ...++..+..-....+ ..+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~ 628 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAG 628 (799)
T ss_pred hhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcc
Confidence 11112233322222111110 00000 00000111111111111111000011 1112222211111000 0000
Q ss_pred HHHHHHHHhCCCCc--------hhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHH
Q 036290 570 SIHPFVIKLGFNTE--------VYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIF 639 (796)
Q Consensus 570 ~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~ 639 (796)
.-. .+.+..+.|. ...|......+.+.+..++|...+.+.-.. + ....|......+...|++++|.+.|
T Consensus 629 se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 000 0111111121 224455667778888888887666343332 2 4455666667778899999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH--HHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 640 DKMKLANLQP-SQATFVSVMSACSHKGLVDKGCL--LFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 640 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~--~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..... +.| +..+..++...+.+.|+..-|.. ++..+. .+.|+ ...|..+...+.+.|+.++|.+.|...
T Consensus 708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal---r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL---RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99888 788 55678888899999998777777 888888 56787 899999999999999999999999876
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=3.9e-05 Score=72.98 Aligned_cols=317 Identities=12% Similarity=0.072 Sum_probs=200.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHH---HHHhcCCchHHHHHHHHHHhcCCcccHHHHHH-HHHHhcccCc
Q 036290 388 LIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLS---GYCFNCCDADVLKTFCNIWESGVEVNGCTFFY-VVETCCRSEN 463 (796)
Q Consensus 388 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~ 463 (796)
+-..+...|++.+|+.-|....+.|...|.++.. .|...|+...|+.-+....+ ++||-..-.. --..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 4455666788888888888888777777776653 67777888778777777766 4666432211 0112233444
Q ss_pred HHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 036290 464 QQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEA 543 (796)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 543 (796)
++.|..-|+.+++... ..|...+|.+-+....+
T Consensus 122 le~A~~DF~~vl~~~~----------------------------------------------s~~~~~eaqskl~~~~e- 154 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEP----------------------------------------------SNGLVLEAQSKLALIQE- 154 (504)
T ss_pred HHHHHHHHHHHHhcCC----------------------------------------------CcchhHHHHHHHHhHHH-
Confidence 4444444444433320 00111111111111000
Q ss_pred CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc--CCCCChhHHHH
Q 036290 544 GEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQS--FNSNDVIVYNT 621 (796)
Q Consensus 544 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 621 (796)
.......+..+...|+...+.+....+.+..+ .|...+..-..+|...|++..|+.-++.. +...+...+--
T Consensus 155 -----~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 155 -----HWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred -----HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 01112233344556677777777776666543 37777777788888888888887666332 33456666667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHH---------HHHHhccCCHHHHHHHHHHhHhhcCCCCC--
Q 036290 622 LIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT----FVSV---------MSACSHKGLVDKGCLLFKSMDSQYGMQPS-- 686 (796)
Q Consensus 622 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~l---------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-- 686 (796)
+-..+-..|+.+.++...++-.+ +.||... |..| +......++|.++++-.+... ...|.
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl---k~ep~~~ 303 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL---KNEPEET 303 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCCccc
Confidence 77777888888888888888877 6676643 2111 123345667777777777766 34555
Q ss_pred ---chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 687 ---PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 687 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
...+..+-.++...|++.+|++...+. .+.|| ..++-.-..+|....+++.|++-|+++.+.+|+|..+...|-.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 234556677788889999999888776 66775 6788888888988899999999999999999988887766655
Q ss_pred hhh
Q 036290 762 RKR 764 (796)
Q Consensus 762 ~~~ 764 (796)
+++
T Consensus 384 Akr 386 (504)
T KOG0624|consen 384 AKR 386 (504)
T ss_pred HHH
Confidence 333
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=3.7e-07 Score=89.99 Aligned_cols=224 Identities=11% Similarity=0.110 Sum_probs=138.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhc
Q 036290 519 AMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN-TEVYVASAVIDAYAKC 597 (796)
Q Consensus 519 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 597 (796)
-+.+++...|+++.++ .++.... .|.......+...+...++.+.+..-++........ .+.........++...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3445555666555433 2332222 555555544444444333334443333332222222 2223333334556778
Q ss_pred CCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c--CCHHHHHHH
Q 036290 598 GDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH--K--GLVDKGCLL 673 (796)
Q Consensus 598 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~--g~~~~A~~~ 673 (796)
|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. . +.+.+|..+
T Consensus 116 ~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 116 GDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHHHH
Confidence 8999998888332 5667777788889999999999999999987 44444 44445544432 2 368899999
Q ss_pred HHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHccCC
Q 036290 674 FKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNK-ELGEWASEKLLLLLP 750 (796)
Q Consensus 674 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p 750 (796)
|+++..+ ..+++.+.+.+..++...|++++|.+++++. ...| ++.+...++.+....|+. +.+.+.++++....|
T Consensus 190 f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 190 FEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9998743 4567888888999999999999999998876 4444 456777777777777877 677888888888888
Q ss_pred CCCc
Q 036290 751 KNDA 754 (796)
Q Consensus 751 ~~~~ 754 (796)
+.+-
T Consensus 268 ~h~~ 271 (290)
T PF04733_consen 268 NHPL 271 (290)
T ss_dssp TSHH
T ss_pred CChH
Confidence 7653
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=0.00018 Score=78.24 Aligned_cols=550 Identities=12% Similarity=-0.004 Sum_probs=298.4
Q ss_pred hhHHHHHhhccCCCC---ceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHH
Q 036290 196 VAAAERVFYSISSDD---VGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLI 272 (796)
Q Consensus 196 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 272 (796)
...|...|=+..+.| ...|..|-..|+..-+...|...|+...+-+ ..|..........++...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 444544443333323 2357777777777777888888888876543 234556667778888888888888772222
Q ss_pred HHhc-CCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcc
Q 036290 273 IRSE-VECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHV 348 (796)
Q Consensus 273 ~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~ 348 (796)
-+.. ...-..-|-.+--.|.+.+....|+.-|+...+ .|...|..+..+|.+.|++..|+++|.+... +.|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s- 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS- 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-
Confidence 1111 000111122233346677888888888887654 3778899999999999999999999988754 34543
Q ss_pred hHHHHHH--HhcccCChHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHH-H
Q 036290 349 TFSILLR--QCGKLLDLDLGLQLQCLALHC------GFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNE-L 419 (796)
Q Consensus 349 t~~~ll~--~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l 419 (796)
+|...-. ..+..|.+.++...+...... +...-..++-.+...+.-.|=..+|.++|+.-. ..+.. +
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l 705 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHH
Confidence 3333222 235678888888887776542 111112222222222222333333444443322 11111 1
Q ss_pred HHHHHhcC----CchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcH---H---HHHHHHHHHHHhCCCCCchhHhHH
Q 036290 420 LSGYCFNC----CDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQ---Q---MVGQIHGAIIKTGFSSCGYICSSL 489 (796)
Q Consensus 420 i~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l 489 (796)
+...+... -...+..+|-+... . .|+......+..-.-..+.. + .+.+.+-.-. .+..+...+..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNL 781 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNL 781 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHH
Confidence 11111100 01223333333331 1 33333333333322222221 1 1111111111 111223333333
Q ss_pred HHHHHh----cCC----cchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036290 490 IKSYVN----FGQ----LDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNS 558 (796)
Q Consensus 490 ~~~~~~----~g~----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 558 (796)
...|.+ .|. ...|...+....+ .+...||.|.-. ...|++.-|...|-+-.... +....+|..+--.
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVL 859 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheecccee
Confidence 332222 221 2245555554433 566778776555 55577777777776655442 4556677777777
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc--cCC--C---CChhHHHHHHHHHHhcCC
Q 036290 559 CAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQ--SFN--S---NDVIVYNTLIMAYAHHGL 631 (796)
Q Consensus 559 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~--~---~~~~~~~~li~~~~~~g~ 631 (796)
|.+..+++.|.+.|...+...+. +...|--........|+.-++..+|.. .+. . ++..-|-+...-...+|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 88899999999999988776544 444444444444556777777777743 111 1 344444444444556666
Q ss_pred hHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHH----HHHHHHH
Q 036290 632 VSEAMEIFDKMKL---------ANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYG----CLVDMLS 698 (796)
Q Consensus 632 ~~~A~~~~~~m~~---------~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~ 698 (796)
.++-....+.+.. .|.+-+...|........+.+.+..|.++..+...-....-+...|+ .+.+.++
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~l 1018 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLEL 1018 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 5554443333321 12233556777777777778888888777776653222333444444 4556667
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 699 RNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
..|.++.|..-+......-+..+-.+-+.. .-.|+++++.+.|++++.+-..+....++|+.
T Consensus 1019 slgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1019 SLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 788888777666555433343333333333 34579999999999999887777776666655
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.69 E-value=2.1e-05 Score=83.52 Aligned_cols=289 Identities=11% Similarity=0.057 Sum_probs=179.6
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCcccHH-HHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCc
Q 036290 421 SGYCFNCCDADVLKTFCNIWESGVEVNGC-TFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQL 499 (796)
Q Consensus 421 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 499 (796)
..+...|++++|++.+.+-.. .-+|.. ....-...+.+.|+.++|..++..+++.+ |.+..-|..+..+..-...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~- 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ- 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc-
Confidence 345667777777777765333 233333 33334445555566666666666666555 3333333333333221110
Q ss_pred chHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCch-HHHHHHHHHHHHh
Q 036290 500 DNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAY-QRTKSIHPFVIKL 578 (796)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 578 (796)
......+...++++++... -|.......+.-.+.....+ ..+..++..+...
T Consensus 88 -------------------------~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K 140 (517)
T PF12569_consen 88 -------------------------LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK 140 (517)
T ss_pred -------------------------cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhc
Confidence 0112456667777777655 34444443333333332223 3456667777778
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----------------CCCChh--HHHHHHHHHHhcCChHHHHHHH
Q 036290 579 GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSF-----------------NSNDVI--VYNTLIMAYAHHGLVSEAMEIF 639 (796)
Q Consensus 579 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 639 (796)
|++ .+|+.+-..|....+.+-..+++.... ..|... ++.-+...|-..|++++|+++.
T Consensus 141 gvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~I 217 (517)
T PF12569_consen 141 GVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYI 217 (517)
T ss_pred CCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 865 355566666665555544444442211 113333 3455677788999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC---
Q 036290 640 DKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP--- 714 (796)
Q Consensus 640 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 714 (796)
++.++ ..|+ ...|..-.+.+-+.|++++|.+.++... .+.+. ..+=+-.+..+.|+|++++|.+++...-
T Consensus 218 d~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 218 DKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999 6685 5567778889999999999999999998 45554 5555567788899999999999998872
Q ss_pred CCCCH------HHHHH--HHHHHHhcCChHHHHHHHHHHHcc
Q 036290 715 FQPSP------TVYRS--LLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 715 ~~p~~------~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
..|-. -.|.. -..+|.+.|++..|..-+..+.+.
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22211 24543 466689999999999998887763
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.60 E-value=2.5e-05 Score=78.44 Aligned_cols=145 Identities=10% Similarity=-0.045 Sum_probs=76.0
Q ss_pred CchHHHHHHHHHHhcC-Cccc--HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHH
Q 036290 428 CDADVLKTFCNIWESG-VEVN--GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFE 504 (796)
Q Consensus 428 ~~~~a~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 504 (796)
..+.++..+.++.... ..|+ ...|...-..+...|+.+.|...+....+.. |.+...++.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555555321 1222 2234444444555566666666666655544 4445666666666666666666666
Q ss_pred HHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 036290 505 FSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFV 575 (796)
Q Consensus 505 ~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 575 (796)
.|+...+ | +...|..+...+...|++++|.+.|++..+. .|+..........+...++.++|...+...
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6665543 2 3445555666666667777777777666554 333221111122223344556666655443
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=3.5e-07 Score=80.34 Aligned_cols=121 Identities=11% Similarity=0.015 Sum_probs=97.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036290 636 MEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM- 713 (796)
Q Consensus 636 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 713 (796)
..++++..+ +.|+. +..+..++...|++++|...|+... ...|+ ...|..+..++.+.|++++|...+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666666 56654 4456677888999999999999987 55675 788888999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecChh
Q 036290 714 PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRK 763 (796)
Q Consensus 714 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 763 (796)
...| +...+..+..++...|+.++|+..++++++..|+++..+...++.+
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4455 5678888899999999999999999999999999998887665533
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=4.6e-08 Score=60.56 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=28.8
Q ss_pred hCCCCCchhhHHHHHHHHccCChhHHHHHhcccC
Q 036290 73 LGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMA 106 (796)
Q Consensus 73 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 106 (796)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888874
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=6.4e-05 Score=70.11 Aligned_cols=188 Identities=7% Similarity=-0.044 Sum_probs=94.9
Q ss_pred hHHHHHHHccCChhHHHHHhhccCCC---CceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHH-HHHhhccC
Q 036290 184 CSVLNFYAKLGDVAAAERVFYSISSD---DVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFIN-ALQGCSLV 259 (796)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~ 259 (796)
.+++..+.+..++++|++++....+. +....+.|-.+|-...++..|.++++++-.. .|...-|.. -...+-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444455555566666655544332 2233444455555556666666666665443 222222211 11122233
Q ss_pred CCchHHHHHHHHHHHhcCCCChHHHHHHH--H--hhhcCCCHHHHHHHHhhcCC-CCcchHHHHHHHHHhCCCccHHHHH
Q 036290 260 ADFDIGRQIHGLIIRSEVECSISIVNALI--D--MYIKSSGMDYAFKVFERMAD-KDVISWNTLFGGFSENKNPGQTASL 334 (796)
Q Consensus 260 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l 334 (796)
+.+..|..+...|... +. ..+..+ . ..-..+++..+..+++..+. .+..+.+.......+.|+++.|++-
T Consensus 92 ~i~ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred cccHHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 4444454444444321 11 111111 1 12245667777777777763 4555555555555677777777777
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCC
Q 036290 335 FHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFL 379 (796)
Q Consensus 335 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 379 (796)
|....+-|--.....|+..+ ++.+.++.+.|++...+++++|+.
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 77765543222334555444 344567777777777777766653
No 98
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.55 E-value=0.0015 Score=66.55 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHh
Q 036290 530 NHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNT-EVYVASAVIDAYAKCGDIKGARMAFD 608 (796)
Q Consensus 530 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 608 (796)
.+.....++++...-..--..+|..+++...+..-+..|..+|.+..+.+..+ ++.+.++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45566666666543322233678889999999999999999999999988776 8888899998887 578899999996
Q ss_pred ccCCC-CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcC--
Q 036290 609 QSFNS-NDV-IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYG-- 682 (796)
Q Consensus 609 ~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-- 682 (796)
-.++. +|. .--...+..+...++-..+..+|++....++.|+. ..|..+|.--+.-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 66665 444 44457788888999999999999999998777744 6799999888999999999999988876544
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 683 MQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 683 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..|....-..+++.|.-.+.+..-..-+..+
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4444445555677776666655544444444
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00011 Score=74.75 Aligned_cols=228 Identities=14% Similarity=0.104 Sum_probs=140.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchh-------HHHH
Q 036290 517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVY-------VASA 589 (796)
Q Consensus 517 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ 589 (796)
...+..+..+..++..|.+-+....+.. -+..-++..-.++...|.+......-....+.|.. ... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3455566666777777777777766553 33333344444566666666555554444443322 111 1122
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCH
Q 036290 590 VIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT-FVSVMSACSHKGLV 667 (796)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~ 667 (796)
+..+|.+.++++.|...|.+.+.. .+.. ...+....+++++..+...- +.|.... ...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 344677778888888888665543 2211 12233345555555555544 4454322 22224566778888
Q ss_pred HHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 036290 668 DKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEK 744 (796)
Q Consensus 668 ~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (796)
..|+..|.+++.+ .|+ ...|....-+|.+.|.+..|++-.+.. .+.|+. ..|..=..++....+++.|.+.|++
T Consensus 375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888843 465 778888888888888888888877666 455554 4555555666666788888888888
Q ss_pred HHccCCCCCcceEEe
Q 036290 745 LLLLLPKNDAAHVLL 759 (796)
Q Consensus 745 ~~~~~p~~~~~~~~l 759 (796)
.++.+|++..+-..+
T Consensus 452 ale~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGY 466 (539)
T ss_pred HHhcCchhHHHHHHH
Confidence 888888776654444
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00026 Score=66.15 Aligned_cols=177 Identities=15% Similarity=0.154 Sum_probs=96.1
Q ss_pred hcCCcchHHHHHhcCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCchHHHHHHH
Q 036290 495 NFGQLDNSFEFSNGAE-RLDMASWGAMMSALVHQGHNHEAVTIFHSLVE-AGEKPDEYILGTILNSCAAIGAYQRTKSIH 572 (796)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 572 (796)
..+++..+..+.++.. +.+..+.+.......+.|+++.|++-|+...+ .|.+|- ..|+..+. ..+.++++.|.+..
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHH
Confidence 3445555555555554 23444444444444556666666666665543 333332 34443332 23445566666666
Q ss_pred HHHHHhCCC-------------Cch--------hHHHHHH-------HHHHhcCCHHHHHHHHhccCCC----CChhHHH
Q 036290 573 PFVIKLGFN-------------TEV--------YVASAVI-------DAYAKCGDIKGARMAFDQSFNS----NDVIVYN 620 (796)
Q Consensus 573 ~~~~~~~~~-------------~~~--------~~~~~li-------~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 620 (796)
.+++.+|++ ||+ -.-+.++ ..+.+.|+++.|.+.+-++-+. -|++|..
T Consensus 202 SEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 202 SEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 666655442 111 1112233 3345678888888888455444 2666655
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290 621 TLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKS 676 (796)
Q Consensus 621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~ 676 (796)
.+.-.-+ .+++.+..+-++-+.+ +.| ...||..++--||+..-++.|-.++.+
T Consensus 282 N~Al~n~-~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 282 NQALMNM-DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhcc-cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 4432221 3445555555555555 345 567888888888888888888777654
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.00031 Score=83.74 Aligned_cols=365 Identities=7% Similarity=-0.050 Sum_probs=218.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCChhh--HHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHH
Q 036290 388 LIYMFCRCGAVEMAHSVFDNVSYKNITT--WNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQ 465 (796)
Q Consensus 388 ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 465 (796)
....+...|++.+|..........+... ...........|+.+.+..++..+.......+..........+...++++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3444566677777666665554432211 11122334456777776666665422111111222223334445667888
Q ss_pred HHHHHHHHHHHhCCC------CC--chhHhHHHHHHHhcCCcchHHHHHhcCCC----CCH----hhHHHHHHHHHHcCC
Q 036290 466 MVGQIHGAIIKTGFS------SC--GYICSSLIKSYVNFGQLDNSFEFSNGAER----LDM----ASWGAMMSALVHQGH 529 (796)
Q Consensus 466 ~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~ 529 (796)
++...+....+.--. +. ......+...+...|++++|...++.... .+. ...+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 888888776543111 11 11222334456678899988887766432 221 234555566778899
Q ss_pred hhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhc
Q 036290 530 NHEAVTIFHSLVEAGE---KPD--EYILGTILNSCAAIGAYQRTKSIHPFVIKL----GFN--T-EVYVASAVIDAYAKC 597 (796)
Q Consensus 530 ~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~ 597 (796)
+++|...+.+.....- .+. ..++..+...+...|+++.|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999999888754211 111 234445556678899999999988876552 221 1 223344556667778
Q ss_pred CCHHHHHHHHhccCCC-----C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHhcc
Q 036290 598 GDIKGARMAFDQSFNS-----N--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATF-----VSVMSACSHK 664 (796)
Q Consensus 598 g~~~~A~~~~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~-----~~ll~~~~~~ 664 (796)
|++++|...+.+.+.. + ....+..+...+...|+++.|...+++.....-.. ....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 9999998888655432 1 23344456667888999999999998875521111 11111 1112334558
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCch----HHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhc
Q 036290 665 GLVDKGCLLFKSMDSQYGMQPSPD----CYGCLVDMLSRNGYLEDAKHVIEIM-------PFQPS-PTVYRSLLSGCRIH 732 (796)
Q Consensus 665 g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~ 732 (796)
|+.+.|..++...... .. .... .+..+..++...|++++|...+++. +..++ ..+...+..++...
T Consensus 667 g~~~~A~~~l~~~~~~-~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 667 GDKEAAANWLRQAPKP-EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred CCHHHHHHHHHhcCCC-CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 8999999998776521 11 1111 1456778889999999999998876 22222 24566667778999
Q ss_pred CChHHHHHHHHHHHccCCCCCc
Q 036290 733 GNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 733 g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
|+.++|...+++++++......
T Consensus 745 G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 745 GRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred CCHHHHHHHHHHHHHHhCccch
Confidence 9999999999999998755443
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.43 E-value=0.00066 Score=70.99 Aligned_cols=20 Identities=10% Similarity=-0.260 Sum_probs=12.3
Q ss_pred HHhcCChHHHHHHHHHHHcc
Q 036290 729 CRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 729 ~~~~g~~~~A~~~~~~~~~~ 748 (796)
+...|+.+.|.+.+..++.+
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 45666666666666666543
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=4.4e-07 Score=56.17 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=24.3
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 377 GFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS 409 (796)
Q Consensus 377 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 409 (796)
|+.||..+|++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=1.7e-05 Score=73.85 Aligned_cols=155 Identities=12% Similarity=0.152 Sum_probs=111.5
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDK 669 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 669 (796)
+-.|...|+++.+.... +....+. ..+...++.+++...+++..+ ..| |...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~-~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEY-QRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHH-HHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34566777776654443 2211111 011225566777777777777 456 77778888888999999999
Q ss_pred HHHHHHHhHhhcCCCCC-chHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 036290 670 GCLLFKSMDSQYGMQPS-PDCYGCLVDML-SRNGY--LEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASE 743 (796)
Q Consensus 670 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (796)
|...+++.. .+.|+ ...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..++
T Consensus 92 A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999888 55676 77777788764 67777 58999999888 4555 55778888888899999999999999
Q ss_pred HHHccCCCCCcceEEe
Q 036290 744 KLLLLLPKNDAAHVLL 759 (796)
Q Consensus 744 ~~~~~~p~~~~~~~~l 759 (796)
++++.+|.+..-+..+
T Consensus 169 ~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 169 KVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHhhCCCCccHHHHH
Confidence 9999988877655444
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.41 E-value=4.1e-05 Score=75.66 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=80.3
Q ss_pred HHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCchH
Q 036290 491 KSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA----IGAYQ 566 (796)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~ 566 (796)
..+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 3445556666666665554 34444555667777777777777777777653 233 333333333322 22456
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 036290 567 RTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLV-SEAMEIFDKMK 643 (796)
Q Consensus 567 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 643 (796)
.|..+|+++.+. +.+++.+.+.+..+....|++++|.+++.+.+.. .+..+...++......|+. +.+.+.+.++.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 666666665432 3345555566666666666666666666555543 2444555555555555555 55556666666
Q ss_pred H
Q 036290 644 L 644 (796)
Q Consensus 644 ~ 644 (796)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 5
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.41 E-value=0.00044 Score=72.35 Aligned_cols=298 Identities=8% Similarity=-0.082 Sum_probs=184.7
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHhcC-CcccHHHHHH-HHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhH--
Q 036290 413 ITTWNELLSGYCFNCCDADVLKTFCNIWESG-VEVNGCTFFY-VVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSS-- 488 (796)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 488 (796)
...|..+...+...|+.+.+...+....... ..++...... -...+...|+++.+.++++...+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456667777777888888777666655432 2233322222 2234466789999999999998874 445444442
Q ss_pred -HHHHHHhcCCcchHHHHHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 036290 489 -LIKSYVNFGQLDNSFEFSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA 564 (796)
Q Consensus 489 -l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 564 (796)
........+..+.+.+.+..... | .......+...+...|++++|...+++..+.. +.+...+..+-..+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234556666666655333 2 22334455567888999999999999998763 4445667778888999999
Q ss_pred hHHHHHHHHHHHHhCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHH----H--HHHHHHHhcCChHH
Q 036290 565 YQRTKSIHPFVIKLGF-NTEV--YVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVY----N--TLIMAYAHHGLVSE 634 (796)
Q Consensus 565 ~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~----~--~li~~~~~~g~~~~ 634 (796)
+++|...++....... .++. ..+..+...+...|++++|...+++.... +....+ + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999998887543 2232 34557888999999999999999665432 211111 1 22333344454443
Q ss_pred HHHHHHHHHH---CCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC------CC-CchHHHHHHHHHHhcCC
Q 036290 635 AMEIFDKMKL---ANLQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM------QP-SPDCYGCLVDMLSRNGY 702 (796)
Q Consensus 635 A~~~~~~m~~---~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~------~p-~~~~~~~l~~~~~~~g~ 702 (796)
+.++ +.+.. ....... ........++...|+.+.|..+++.+.....- .. ..........++.+.|+
T Consensus 244 ~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 244 GDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred HHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 3333 22221 1111111 22234566778899999999999998753111 00 13333344455678999
Q ss_pred hHHHHHHHHhC
Q 036290 703 LEDAKHVIEIM 713 (796)
Q Consensus 703 ~~~A~~~~~~~ 713 (796)
+++|.+.+...
T Consensus 323 ~~~A~~~L~~a 333 (355)
T cd05804 323 YATALELLGPV 333 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=2.6e-05 Score=76.03 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=48.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIM-PFQ---P-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
.+...+.+.|++++|...+++. ... | ....+..+..++.+.|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4667788999999999999887 222 3 3468889999999999999999999888777664
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=3.8e-05 Score=80.73 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=173.7
Q ss_pred CCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036290 478 GFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILN 557 (796)
Q Consensus 478 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 557 (796)
+++|-...-..+...+.+.|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.++ +||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 45666677778889999999999999999877 46778888999999999999988887763 899999999999
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHH
Q 036290 558 SCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEA 635 (796)
Q Consensus 558 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 635 (796)
......-+++|.++.+..... .-..+.....+.++++++.+.|+..+.-. ...+|-.+..+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 888888889999888765432 11222223344788999999997766653 667888888888889999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 636 MEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 636 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
.+.|..-.. ..|| ...||.+-.+|.+.|+-.+|...+++..+- . .-+...|...+....+-|.+++|++.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999998887 7784 456999999999999999999999998844 4 344556666777788899999999998887
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00058 Score=63.23 Aligned_cols=174 Identities=16% Similarity=0.128 Sum_probs=115.3
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036290 572 HPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ 651 (796)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 651 (796)
.+.+.......+......-...|+..|++++|++.. ... .+....-.=+..+.+..+++-|.+.+++|.+ +. +.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~-~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKAL-HLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-ED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHH-hcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hH
Confidence 333333333333333333345678888888888888 332 2333333334455677788888888888887 33 55
Q ss_pred HHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 036290 652 ATFVSVMSACSH----KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM--PFQPSPTVYRSL 725 (796)
Q Consensus 652 ~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 725 (796)
.|.+.|..++.+ .+++.+|.-+|++|.. +..|++.+.+-...++...|++++|..++++. +...++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 677777776643 3468888899998872 37788888888888888899999999888887 334466677666
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHccCCCCC
Q 036290 726 LSGCRIHG-NKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 726 ~~~~~~~g-~~~~A~~~~~~~~~~~p~~~ 753 (796)
+-+-...| +.+-..+...+.....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66655566 44555666677767777654
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.27 E-value=0.025 Score=67.64 Aligned_cols=365 Identities=9% Similarity=-0.080 Sum_probs=172.8
Q ss_pred HHhhhcCCCHHHHHHHHhhcCCCCcch--HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHH
Q 036290 288 IDMYIKSSGMDYAFKVFERMADKDVIS--WNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDL 365 (796)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 365 (796)
...+...|++.+|..........+... ...........|+...+..+++.+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344556677776666555554432111 111122344556666666666554221111122222223333455677777
Q ss_pred HHHHHHHHHHhCC------CCc--hhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCh----hhHHHHHHHHHhcCCc
Q 036290 366 GLQLQCLALHCGF------LDE--ENVTSSLIYMFCRCGAVEMAHSVFDNVSY----KNI----TTWNELLSGYCFNCCD 429 (796)
Q Consensus 366 a~~~~~~~~~~g~------~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~ 429 (796)
+..++....+.-- .+. ......+...+...|++++|...++.... .+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 7777766544210 011 11112222334456666666666655321 111 1233344445556666
Q ss_pred hHHHHHHHHHHhcCC-----cccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh----CCCCCchhHhHHHHHHHhcCCcc
Q 036290 430 ADVLKTFCNIWESGV-----EVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT----GFSSCGYICSSLIKSYVNFGQLD 500 (796)
Q Consensus 430 ~~a~~~~~~m~~~g~-----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~ 500 (796)
++|...+.+.....- .+...++..+...+...|+++.|...+++..+. +.....
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~----------------- 570 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP----------------- 570 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc-----------------
Confidence 666666655543210 011122223333444455555555555444331 100000
Q ss_pred hHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhccCchHHHHHHHHHHH
Q 036290 501 NSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEA--GEKPD--EYILGTILNSCAAIGAYQRTKSIHPFVI 576 (796)
Q Consensus 501 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 576 (796)
.....+..+...+...|++++|...+.+.... ...+. ...+..+.......|+.+.|.+.+....
T Consensus 571 -----------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 571 -----------MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred -----------HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00111222333444456666666666554321 11111 2223333445556677777776666654
Q ss_pred HhCCCC-chhHH-----HHHHHHHHhcCCHHHHHHHHhccCCCC--Ch----hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 577 KLGFNT-EVYVA-----SAVIDAYAKCGDIKGARMAFDQSFNSN--DV----IVYNTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 577 ~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
...... ....+ ...+..+...|+.+.|.+.+....... .. ..+..+..++...|++++|...+++...
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 640 NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421110 00000 111234455778888887774433321 11 1134556677788888888888887765
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290 645 A----NLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 645 ~----g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
. |..++ ..+...+..++...|+.++|...+.++...
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 22221 234555566777888888888888888743
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00015 Score=74.46 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=77.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290 614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG 691 (796)
Q Consensus 614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 691 (796)
.|......|.-.|--.|.+++|...|+..+. ++| |..+||.|--.++...+.++|+..|.++. .++|. +....
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~Ry 502 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRY 502 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeeh
Confidence 4556666666666666777777777777766 666 55567777777777777777777777776 56777 55555
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----C--------CCCCHHHHHHHHHHHHhcCChHHHHH
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIM----P--------FQPSPTVYRSLLSGCRIHGNKELGEW 740 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~----~--------~~p~~~~~~~l~~~~~~~g~~~~A~~ 740 (796)
.|.-.|...|.+.+|.+.|-+. . ..++..+|.+|-.++.-.++.+.+.+
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 6666677777777777665443 0 11233567666666666666554433
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=2.5e-05 Score=81.97 Aligned_cols=212 Identities=13% Similarity=0.083 Sum_probs=171.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036290 518 GAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC 597 (796)
Q Consensus 518 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 597 (796)
..+...+.+.|-...|..+|+++. .+..++.+|+..|+..+|..+..+..+ -+|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 456677888899999999999864 456678889999999999998887776 567899999999998888
Q ss_pred CCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290 598 GDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKS 676 (796)
Q Consensus 598 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~ 676 (796)
.-++.|+++.+..... .-..+.....+.++++++.+.|+.-.+ +.| -..+|-.+-.+..+.++++.|.+.|..
T Consensus 471 s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 8899999999433322 111222223347899999999999888 666 667888888888899999999999999
Q ss_pred hHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290 677 MDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 677 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 749 (796)
.. ...|+ ...|+.+..+|.+.|+..+|...+.+. +. .-+...|...+-...+-|.+++|++++.++++..
T Consensus 545 cv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 545 CV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred Hh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 98 67888 899999999999999999999999988 33 3344678777778889999999999999998754
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.24 E-value=0.0025 Score=61.14 Aligned_cols=201 Identities=9% Similarity=0.072 Sum_probs=117.2
Q ss_pred HHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhc---CCCCCHhhHHHHHHHHHHcCChhH
Q 036290 456 ETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNG---AERLDMASWGAMMSALVHQGHNHE 532 (796)
Q Consensus 456 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~ 532 (796)
..+...|+...+......+++.. +.+...|..-..+|...|.+..|+.=++. +...++...-.+-..+...|+.+.
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 33445566677777776666654 56666777777777777777777654443 333455555555566666777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036290 533 AVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN 612 (796)
Q Consensus 533 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 612 (796)
++...++-.+. .||....-..-. .+.+..+.++.| ......+++.++++-.+..++
T Consensus 242 sL~~iRECLKl--dpdHK~Cf~~YK------klkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDHKLCFPFYK------KLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHHHcc--CcchhhHHHHHH------HHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHh
Confidence 77766665543 555543221111 111111111111 122334556666555544444
Q ss_pred C-CC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 036290 613 S-ND-----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP 685 (796)
Q Consensus 613 ~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 685 (796)
. |. ...+..+-.++...|++.+|+....+..+ +.|| ..++.--..+|.-...|+.|+.-|+.+. ...+
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~---e~n~ 372 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL---ELNE 372 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hcCc
Confidence 3 22 12334455566667788888888888877 6774 6677777777877788888888888776 4445
Q ss_pred C
Q 036290 686 S 686 (796)
Q Consensus 686 ~ 686 (796)
+
T Consensus 373 s 373 (504)
T KOG0624|consen 373 S 373 (504)
T ss_pred c
Confidence 4
No 114
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=0.00066 Score=68.13 Aligned_cols=223 Identities=9% Similarity=-0.010 Sum_probs=137.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036290 520 MMSALVHQGHNHEAVTIFHSLVEAGEKPDEY-ILGTILNSCAAIG-AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC 597 (796)
Q Consensus 520 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 597 (796)
+-..+...++.++|+.+..++.+. .|+.. .|..--..+...| +++++...++.+.+.+.+ +..+|+.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 334445566777777777777654 44443 2333223333444 467777777777776555 444555554455555
Q ss_pred CCH--HHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc---CC---
Q 036290 598 GDI--KGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK---GL--- 666 (796)
Q Consensus 598 g~~--~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---g~--- 666 (796)
|+. ++++.+++.++.. .+..+|+...-.+...|+++++++.++++.+. .| |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccc
Confidence 542 5566666555543 47778888888888888888888888888884 44 555666655554443 22
Q ss_pred -HHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----
Q 036290 667 -VDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN----GYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHG----- 733 (796)
Q Consensus 667 -~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g----- 733 (796)
.++++++..++. ...|+ ...|+.+..++... ++..+|.+.+.+. ...| +......|+..+....
T Consensus 198 ~~e~el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~ 274 (320)
T PLN02789 198 MRDSELKYTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAE 274 (320)
T ss_pred cHHHHHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchh
Confidence 245666666665 44565 77777777777663 3456677777765 3344 4456677777776432
Q ss_pred -------------ChHHHHHHHHHHHccCC
Q 036290 734 -------------NKELGEWASEKLLLLLP 750 (796)
Q Consensus 734 -------------~~~~A~~~~~~~~~~~p 750 (796)
..++|.++++.+-+.||
T Consensus 275 ~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 275 FRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 23668888887766666
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=5.2e-05 Score=77.64 Aligned_cols=222 Identities=15% Similarity=0.072 Sum_probs=140.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036290 525 VHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR 604 (796)
Q Consensus 525 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 604 (796)
.+.|+..+|.-.|+....+. +-+...|..|-......++-..|+..+.+..+.... +......|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 34455555555555544431 222334444444444445545555555554444333 4555556666666666666666
Q ss_pred HHHhccCCCCChhHHHHHH---------HHHHhcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036290 605 MAFDQSFNSNDVIVYNTLI---------MAYAHHGLVSEAMEIFDK-MKLANLQPSQATFVSVMSACSHKGLVDKGCLLF 674 (796)
Q Consensus 605 ~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~ 674 (796)
+.+++.+...-...|.... ..+.....+....++|-+ ....+..+|......|--.|--.|.+++|...|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 6665543321110000000 111112223344444444 445554456666666666677889999999999
Q ss_pred HHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 675 KSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 675 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
+.+. .++|+ ...|+.|...++...+.++|++.|.++ .++|.. .++..|.-+|...|.+++|...+=.++.+.+.
T Consensus 454 ~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9998 67887 788999999999999999999999988 788986 57888999999999999999999999887665
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=1.7e-05 Score=69.54 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=87.9
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036290 638 IFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-P 714 (796)
Q Consensus 638 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 714 (796)
.+++... ..| +......+...+...|++++|...++.+.. ..| +...+..+..++.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 556 334455666778888999999999988873 345 4777888888999999999999888877 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 715 FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 715 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
..| +...+..+..++...|++++|...++++++.+|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 444 557778888888899999999999999999999887643
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00014 Score=67.38 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=111.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 036290 588 SAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK 664 (796)
Q Consensus 588 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 664 (796)
..+...+.-.|+-+....+..+.... .|.......+....+.|++..|...+++... ..| |...|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 44555566667777666666443333 2555666678888888888888888888877 444 777888888888888
Q ss_pred CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHH
Q 036290 665 GLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQ-P-SPTVYRSLLSGCRIHGNKELGEWA 741 (796)
Q Consensus 665 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~ 741 (796)
|+.+.|..-|.+.. .+.|+ +..++.|.-.|.-.|+.+.|..++...... + |..+-..+.-.....|++..|+.+
T Consensus 148 Gr~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888888777 45665 677788888888888888888888877322 2 566667777777888888888887
Q ss_pred HHHH
Q 036290 742 SEKL 745 (796)
Q Consensus 742 ~~~~ 745 (796)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6653
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=0.00016 Score=80.13 Aligned_cols=126 Identities=11% Similarity=0.082 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 036290 583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA-TFVSVMS 659 (796)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 659 (796)
+...+..|.......|++++|..+++..+.. | +...+..+...+.+.+++++|+..+++... ..|+.. ....+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 4455555555555555555555555433332 2 334444455555555555555555555555 344332 2333444
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
++.+.|++++|..+|+++.. ..|+ ..++..+..++...|+.++|...|++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555555552 2333 445555555555555555555555554
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.005 Score=63.06 Aligned_cols=213 Identities=12% Similarity=0.103 Sum_probs=100.9
Q ss_pred HHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC---HhhHH-------HHH
Q 036290 452 FYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD---MASWG-------AMM 521 (796)
Q Consensus 452 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-------~li 521 (796)
..+.++..+..+++.+.+-+....+.. -+..-++....+|...|.+..+........+.. ..-|+ .+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344455555555555655555555544 344445555556666665555544433322211 11122 123
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290 522 SALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIK 601 (796)
Q Consensus 522 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 601 (796)
.+|.+.++++.|...|++....-..|+..+ +....+.+........-.+...-. -...-...+.+.|++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~A~-e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEKAE-EEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhHHH-HHHHHHHHHHhccCHH
Confidence 355556777777777777554433443222 122222232222222222221100 1111133445556666
Q ss_pred HHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 602 GARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 602 ~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
.|...|.+++.. | |...|.....+|.+.|.+..|++-.+...+ +.|+. ..|..=..++....+|+.|.+.|++..
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555544 2 555666666666666666666666555555 34432 223333334444455666666665555
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.15 E-value=0.00024 Score=80.00 Aligned_cols=223 Identities=16% Similarity=0.158 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290 516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE-----YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV 590 (796)
Q Consensus 516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 590 (796)
.|-..|....+.++.++|.++.++.... +.+.. ..|.++++.-..-|.-+...++|+++.+..- ...+|..|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKL 1536 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHH
Confidence 4444555555555555555555554332 11111 2333444433344444444455554444221 12344445
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccC
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT---FVSVMSACSHKG 665 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g 665 (796)
...|.+.+.+++|.++++.++++ .....|...+..+.++.+-+.|..++++..+ .-|.... ..-.+..-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhcC
Confidence 55555555555555555444443 2444555555555555555555555555544 2232111 111222223445
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCH--HHHHHHHHHHHhcCChHHHH
Q 036290 666 LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM---PFQPSP--TVYRSLLSGCRIHGNKELGE 739 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~--~~~~~l~~~~~~~g~~~~A~ 739 (796)
+.+++..+|+..... .|- ...|+.+++.-.+.|+.+.+..+|++. ++.|-. ..|...+..-..+||-+.++
T Consensus 1615 DaeRGRtlfEgll~a---yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA---YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CchhhHHHHHHHHhh---CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 555555555555422 222 444555555555555555555555554 222221 33444444444445554444
Q ss_pred HHHHHHH
Q 036290 740 WASEKLL 746 (796)
Q Consensus 740 ~~~~~~~ 746 (796)
.+=.++.
T Consensus 1692 ~VKarA~ 1698 (1710)
T KOG1070|consen 1692 YVKARAK 1698 (1710)
T ss_pred HHHHHHH
Confidence 4444443
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.12 E-value=5.1e-05 Score=66.70 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM 696 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 696 (796)
+..+...+...|++++|...|++... ..| +...|..+..++...|++++|...|+.+. ...|+ +..+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al---~l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL---MLDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 44556677788888888888888877 556 66677778888888888888888888887 45665 7778888888
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHHH
Q 036290 697 LSRNGYLEDAKHVIEIM-PFQPSPTVY 722 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~-~~~p~~~~~ 722 (796)
+.+.|++++|++.+++. ...|+...|
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 88888888888888887 556654333
No 122
>PLN02789 farnesyltranstransferase
Probab=98.11 E-value=0.00016 Score=72.48 Aligned_cols=196 Identities=11% Similarity=-0.018 Sum_probs=143.6
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCCh--HH
Q 036290 560 AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG-DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLV--SE 634 (796)
Q Consensus 560 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~--~~ 634 (796)
...+..++|....+.+++.... +..+|+....++...| ++++++..+++.+.. .+...|+...-.+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 3445677888888888876554 4446666666667777 679999999666654 3666777666566666653 67
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc---CCh----HH
Q 036290 635 AMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN---GYL----ED 705 (796)
Q Consensus 635 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~----~~ 705 (796)
++.+++++.+ ..| |..+|.....++...|+++++++.++++.+. .|+ ...|+....++.+. |.. ++
T Consensus 127 el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 127 ELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHH
Confidence 8999999998 667 7788999999999999999999999999843 444 66676666666554 323 45
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 706 AKHVIEIM-PFQP-SPTVYRSLLSGCRIH----GNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 706 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
+.++..++ ...| |...|+.+...+... ++..+|...+.++++.+|+++.+...|+.
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d 263 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLD 263 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHH
Confidence 66776454 5566 557898888888773 44567999999999999998888777755
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.11 E-value=0.00018 Score=70.00 Aligned_cols=183 Identities=13% Similarity=0.066 Sum_probs=111.3
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchh--
Q 036290 512 LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE----YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVY-- 585 (796)
Q Consensus 512 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 585 (796)
.....+..+...+.+.|++++|...|+++... .|+. ..+..+..++...|+++.|...++.+.+........
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 45566777778888889999999999888665 3332 345666677778888888888888887755432221
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHhccCCC-CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036290 586 VASAVIDAYAKC--------GDIKGARMAFDQSFNS-NDV-IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFV 655 (796)
Q Consensus 586 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 655 (796)
.+..+..++... |+.++|.+.++..+.. |+. ..+..+.. +..+... . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~--------------~~~~~~~---~-~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR--------------MDYLRNR---L-AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH--------------HHHHHHH---H-HHHHH
Confidence 233333344332 4555555555333322 211 11111110 0000000 0 00012
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP 714 (796)
Q Consensus 656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (796)
.+...+.+.|++++|...++.....+.-.|. ...+..++.++.+.|++++|.++++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445678889999999999998855333333 5678889999999999999999888773
No 124
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.8e-06 Score=52.68 Aligned_cols=35 Identities=17% Similarity=0.499 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 036290 111 VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNE 145 (796)
Q Consensus 111 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 145 (796)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.08 E-value=0.00017 Score=67.18 Aligned_cols=112 Identities=7% Similarity=0.027 Sum_probs=85.3
Q ss_pred cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hccCC--HHHH
Q 036290 597 CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC-SHKGL--VDKG 670 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~-~~~g~--~~~A 670 (796)
.++.+++...++..+.. .+...|..+...|...|++++|...|++..+ +.| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666555543 4778888888888889999999999988888 567 556666666654 56666 5889
Q ss_pred HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 671 CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
.+++++.. ...|+ ...+..+...+.+.|++++|+..++++
T Consensus 130 ~~~l~~al---~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 130 REMIDKAL---ALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998888 45665 777888888888899999999999887
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.03 E-value=0.0034 Score=70.55 Aligned_cols=176 Identities=11% Similarity=0.047 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc
Q 036290 550 YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH 629 (796)
Q Consensus 550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 629 (796)
..+..+..+|.+.|+.+++..+|+++.+... -++.+.|.+...|... ++++|.+++. ..+..|...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~------------KAV~~~i~~ 182 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLK------------KAIYRFIKK 182 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHH------------HHHHHHHhh
Confidence 3566666677777777777777777777663 3677777777777777 7777777772 233335666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH---------------------HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-c
Q 036290 630 GLVSEAMEIFDKMKLANLQPSQAT---------------------FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-P 687 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p~~~t---------------------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~ 687 (796)
+++..+.++|.++.+ ..|+... +..+-..|...++|+++..+++.+. ...|+ .
T Consensus 183 kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL---~~~~~n~ 257 (906)
T PRK14720 183 KQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL---EHDNKNN 257 (906)
T ss_pred hcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH---hcCCcch
Confidence 677777777777766 3443222 2222344455556666666666666 34444 3
Q ss_pred hHHHHHHHHHHh-cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290 688 DCYGCLVDMLSR-NGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 688 ~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
....-++.+|.. -++.....+.++.-++.. ...++..+..-|++.+-.+|++-..|.
T Consensus 258 ~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~-------------~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 258 KAREELIRFYKEKYKDHSLLEDYLKMSDIGN-------------NRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred hhHHHHHHHHHHHccCcchHHHHHHHhcccc-------------CCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 444444444431 111111111111111110 113457778888888888888777765
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00024 Score=62.75 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ----ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYG 691 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~ 691 (796)
.|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|+ .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 345555555 478888888888888884 3432 22334557788899999999999999855 32232 23455
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIMPFQ-PSPTVYRSLLSGCRIHGNKELGEWASEKLL 746 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 746 (796)
.|..++...|++++|+..++..... ..+..+......+.+.|+.++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6788889999999999999876322 244566777888999999999999998864
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=9.8e-06 Score=51.19 Aligned_cols=35 Identities=34% Similarity=0.443 Sum_probs=31.9
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 036290 212 GCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDK 246 (796)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 246 (796)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999873
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0024 Score=59.27 Aligned_cols=217 Identities=9% Similarity=0.103 Sum_probs=140.8
Q ss_pred HHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCchH
Q 036290 488 SLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVT-IFHSLVEAGEKPDEYILGTILNSCAAIGAYQ 566 (796)
Q Consensus 488 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 566 (796)
-+..+|...|++.....-...-..+.......+...+..-++.++-+. +.+.+.......+......-...|+..++++
T Consensus 46 y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~d 125 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFD 125 (299)
T ss_pred HHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChH
Confidence 344556666665544333333332333333333333333444444433 3444444444444333334445688889999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHH
Q 036290 567 RTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEIFDKM 642 (796)
Q Consensus 567 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 642 (796)
.|.+...... +......=+..+.+..+++-|.+.++++..-.+-.+.+.|..++.+ .+....|.-+|++|
T Consensus 126 eAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 126 EALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred HHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 9988776521 2333333356677888999999999677666777888877777654 44689999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHH-HHHHhC
Q 036290 643 KLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAK-HVIEIM 713 (796)
Q Consensus 643 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 713 (796)
-+. ..|+..+.+....++...|++++|..++++...+ -.-++.++..++-+-...|...++. +.+...
T Consensus 200 s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 200 SEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 875 6789999999999999999999999999999844 2334777777777777778765544 455555
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1e-05 Score=50.69 Aligned_cols=33 Identities=24% Similarity=0.554 Sum_probs=28.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 036290 111 VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMP 143 (796)
Q Consensus 111 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 143 (796)
.+||.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 131
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.97 E-value=0.0013 Score=74.44 Aligned_cols=215 Identities=10% Similarity=0.072 Sum_probs=116.1
Q ss_pred CchhHhHHHHHHHhcCCcchHHHHHhcCCC--------CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036290 482 CGYICSSLIKSYVNFGQLDNSFEFSNGAER--------LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILG 553 (796)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~ 553 (796)
+...|-..|......++.++|.+++++... .-.-.|.++++.-...|.-+...++|++..+. .-.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 344455555555555566665555554432 12234555555555555555556666665543 12223455
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C---ChhHHHHHHHHHHhc
Q 036290 554 TILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N---DVIVYNTLIMAYAHH 629 (796)
Q Consensus 554 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~li~~~~~~ 629 (796)
.|...|.+.+..+.|.++++.|.+.-- -...+|...++.+.+.++-+.|..++.+++.. | .+......+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 556666666666666666666655311 34556666666666666666666666555443 2 333444444555566
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCC
Q 036290 630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGY 702 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 702 (796)
|+.+++..+|+..... .| ....|+..++.-.++|+.+.+..+|+++... ++.|- ...|...+..--..|+
T Consensus 1614 GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-KLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred CCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCChhHhHHHHHHHHHHHHhcCc
Confidence 6666666666666552 23 4455666666666666666666666666643 55444 2333333333333344
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00018 Score=73.60 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036290 587 ASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG 665 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 665 (796)
...|+..+...++++.|..++ +.+...++.....+++.+...++-.+|.+++++..+ ..| +...+..-...|.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~ll-e~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELL-EKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHH-HHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence 344555556667777777777 444444444555677777777777888888888776 345 5455555556677888
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 036290 666 LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQP 717 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 717 (796)
+++.|+++.+++. ...|+ ..+|..|+.+|.+.|++++|+..++.++..|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8888888888887 56777 6688888888888888888888888886444
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0037 Score=57.62 Aligned_cols=182 Identities=14% Similarity=0.144 Sum_probs=98.1
Q ss_pred cCChhHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290 527 QGHNHEAVTIFHSLVE---AG-EKPDEYI-LGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIK 601 (796)
Q Consensus 527 ~~~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 601 (796)
..+.++.++++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+.+.- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3456666666666632 33 4455443 3445555666677777777777766543 222222222233344556666
Q ss_pred HHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290 602 GARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 602 ~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 679 (796)
+|.++++..+.. | |..++---+......|+.-+|++-+.+..+. +..|...|.-+..-|...|+++.|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 666666544443 2 4445554455555555555666555555552 23366666666666666666666666666665
Q ss_pred hcCCCCC-chHHHHHHHHHHhcC---ChHHHHHHHHhC
Q 036290 680 QYGMQPS-PDCYGCLVDMLSRNG---YLEDAKHVIEIM 713 (796)
Q Consensus 680 ~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 713 (796)
-+.|- +..+..+.+.+.-.| +.+-|.+++.+.
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34454 444445555554443 344455555554
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.054 Score=59.31 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 690 YGCLVDMLSRNGYLEDAKHVIEIMP 714 (796)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (796)
-+..++.+...++.++-...++.|.
T Consensus 582 E~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 582 ENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHhCCcHHHHHHHHhccc
Confidence 3445555666666666666666664
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.4e-05 Score=49.97 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.3
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 036290 212 GCWNAMIGGYAHCGYGFEALNVVSSMLFEGITM 244 (796)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 244 (796)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999888887
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.92 E-value=0.0032 Score=63.84 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=88.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQPSQATFV-SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY 702 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 702 (796)
.+...|++++|+..++.+.. -.|+..-|. ....-+...++.++|.+.++.+. ...|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCC
Confidence 34456778888888888777 456544443 44466777888888888888877 45676 5555567778888888
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEE
Q 036290 703 LEDAKHVIEIM--PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVL 758 (796)
Q Consensus 703 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 758 (796)
+.+|+..+++. ..+-|+..|..|..+|...|+..++....-+...+..+-..+...
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIF 447 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888777 334466778888888888887777777777666655544433333
No 137
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00087 Score=62.22 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHH
Q 036290 546 KPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLI 623 (796)
Q Consensus 546 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li 623 (796)
.|+......+-.++...|+-+....+...... ...-|.......+....+.|++.+|...+.+.... +|...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 44333323334445555555555444433222 12225556666888899999999999999665543 5889999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGY 702 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 702 (796)
-+|.+.|+++.|..-|.+..+ +.| +...++.+...+.-.|+++.|..++...... -.-|..+-..+.......|+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCC
Confidence 999999999999999999999 777 5566888888899999999999999988733 22256677788999999999
Q ss_pred hHHHHHHHHhC
Q 036290 703 LEDAKHVIEIM 713 (796)
Q Consensus 703 ~~~A~~~~~~~ 713 (796)
+++|..+...-
T Consensus 218 ~~~A~~i~~~e 228 (257)
T COG5010 218 FREAEDIAVQE 228 (257)
T ss_pred hHHHHhhcccc
Confidence 99999988665
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0017 Score=59.73 Aligned_cols=193 Identities=18% Similarity=0.172 Sum_probs=137.0
Q ss_pred CchHHHHHHHHHHHH---hC-CCCchh-HHHHHHHHHHhcCCHHHHHHHHhccCCC-CCh-hHHHHHHHHHHhcCChHHH
Q 036290 563 GAYQRTKSIHPFVIK---LG-FNTEVY-VASAVIDAYAKCGDIKGARMAFDQSFNS-NDV-IVYNTLIMAYAHHGLVSEA 635 (796)
Q Consensus 563 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A 635 (796)
.+.+...+++..+.. .| ..++.. +|..++-+....|+.+.|...+++...+ |.. ..-..-...+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 355666666666654 23 444443 4455666777889999998888432222 322 2222222335668999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036290 636 MEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM- 713 (796)
Q Consensus 636 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 713 (796)
+++++.+.+.. | |.+++..-+-..-..|+--+|++-+....+. +..|...|.-+...|...|++++|.--++++
T Consensus 106 ~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 106 IEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999854 5 7778877666677788888888888887744 5677999999999999999999999999998
Q ss_pred CCCCCH-HHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCCCCcceEEe
Q 036290 714 PFQPSP-TVYRSLLSGCRIHG---NKELGEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 714 ~~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l 759 (796)
-..|-. ..+..+...+...| +.+.|+..++++++++|.+..++..+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 456644 44556666654443 78899999999999999777666433
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.90 E-value=0.00066 Score=76.08 Aligned_cols=212 Identities=10% Similarity=0.087 Sum_probs=143.3
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290 512 LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILN-SCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV 590 (796)
Q Consensus 512 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 590 (796)
.+...|..|+..+...+++++|.++.++..+. .|+...+-.+.. .+.+.++.+.+.-+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 45667889999999999999999999976654 666554433332 34455554444333 22
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVD 668 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 668 (796)
++......++.-+..+...+..- .+...+..+..+|.+.|+.++|..+|+++.+ +.| |....|.+...|+.. +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHH
Confidence 33333333342222222112222 2445778889999999999999999999999 557 778889999999888 999
Q ss_pred HHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------------------HHHHHHHH
Q 036290 669 KGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS---------------------PTVYRSLL 726 (796)
Q Consensus 669 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------------------~~~~~~l~ 726 (796)
+|.+++.++... +...+++.++.++++++ ...|+ ..++.-+-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 999999888743 44445666666666555 12222 23344444
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 727 SGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
..|.+.++++++..+++.+++.+|.|..+..-|+.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~ 265 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIR 265 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHH
Confidence 66777889999999999999999998887544433
No 140
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.88 E-value=0.00062 Score=75.58 Aligned_cols=178 Identities=8% Similarity=0.042 Sum_probs=136.7
Q ss_pred HHHcCChhHHHHHH---HHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036290 524 LVHQGHNHEAVTIF---HSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI 600 (796)
Q Consensus 524 ~~~~~~~~~A~~~~---~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 600 (796)
.-+++....+..-+ ..... ....+...+..|.....+.|.+++|..+++...+..+. +......+...+.+.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 59 LERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccH
Confidence 33444444444444 33333 35666888889999999999999999999999887665 566777788999999999
Q ss_pred HHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 036290 601 KGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSM 677 (796)
Q Consensus 601 ~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 677 (796)
++|+..+++.+.. | +......+..++.+.|++++|..+|++... ..| +..++..+..++...|+.++|...|+..
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999777775 3 667788888999999999999999999998 345 4778889999999999999999999999
Q ss_pred HhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 678 DSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 678 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
... ..|....|+.++ +++..-..+++++
T Consensus 215 ~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 215 LDA--IGDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred HHh--hCcchHHHHHHH------HHHHHHHHHHHHc
Confidence 844 334444544332 4445556677777
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.0002 Score=61.02 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=69.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS----PTVYRSLL 726 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 726 (796)
++..+...+...|++++|.+.|+.+...+.-.|. ...+..++.++.+.|++++|.+.++++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566667777788888877777744211111 345566777788888888888888776 33333 34567777
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 727 SGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
.++.+.|+.++|...++++++..|+++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 77788888888888888888888876654
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=4.8e-05 Score=71.76 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=97.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG 701 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 701 (796)
.-+.+.+++++|+..|.+.++ +.| |.+-|..-..+|.+.|.++.|++-.+... .+.|. ..+|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 446788899999999999998 778 55566777888999999999999888877 67787 788999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChH---HHHHHHHHHHcc--CCCCCcceE-EecC
Q 036290 702 YLEDAKHVIEIM-PFQPSPTVYRSLLSG-CRIHGNKE---LGEWASEKLLLL--LPKNDAAHV-LLSK 761 (796)
Q Consensus 702 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~~---~A~~~~~~~~~~--~p~~~~~~~-~l~~ 761 (796)
++++|++.|++. .+.|+..+|..=+.. -.+.+..+ .+...++..-.+ .|+....+. -|-+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~~~l~n 231 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFNGDLMN 231 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhcccccc
Confidence 999999998887 788888777544444 33334433 444444433332 255555554 5555
No 143
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.75 E-value=0.0028 Score=64.20 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 036290 597 CGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLL 673 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~ 673 (796)
.|++++|+..++..+.. | |+..+......+...++..+|.+.++++.. ..|+ ......+..++.+.|++.+|+.+
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 34444444444333322 2 333334444444555555555555555544 3443 22233344445555555555555
Q ss_pred HHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHH
Q 036290 674 FKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKH 708 (796)
Q Consensus 674 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 708 (796)
++..... .+-|+..|..|..+|...|+..+|..
T Consensus 397 L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 397 LNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHH
Confidence 5444411 12224455555555555554444443
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.75 E-value=0.00049 Score=60.15 Aligned_cols=102 Identities=14% Similarity=0.221 Sum_probs=71.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
+......+...+...|++++|.+.+++... ..| +...+..+...+...|++++|..+++... ...|+ ...+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~---~~~p~~~~~~~~ 90 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA---ALDPDDPRPYFH 90 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCChHHHHH
Confidence 344455666667777888888888888777 335 55666677777778888888888888776 33444 666777
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM-PFQPSPTV 721 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 721 (796)
+..++...|++++|.+.+++. ...|+...
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 778888888888888888776 44555443
No 145
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0006 Score=73.30 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=101.3
Q ss_pred CChhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhHh
Q 036290 614 NDVIVYNTLIMAYAH--HG---LVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHK--------GLVDKGCLLFKSMDS 679 (796)
Q Consensus 614 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~--------g~~~~A~~~~~~~~~ 679 (796)
.+...|...+++... .+ +.+.|..+|++..+ ..|+. ..|..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 466777777776443 22 36789999999998 77854 3444443333221 123444555554432
Q ss_pred hcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 680 QYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 680 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
......++..|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...++++++++|.+++.|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 2123334677888877777889999999999998 6778888899999999999999999999999999999988643
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00028 Score=66.68 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=69.5
Q ss_pred HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKG 670 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A 670 (796)
+.+.+++.+|+..|.+.+.- .|.+.|..-..+|.+.|.++.|++-.+..+. +.| -..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 55677788888888776664 3677777777788888888888887777777 667 445777888888888888888
Q ss_pred HHHHHHhHhhcCCCCCchHHHH
Q 036290 671 CLLFKSMDSQYGMQPSPDCYGC 692 (796)
Q Consensus 671 ~~~~~~~~~~~~~~p~~~~~~~ 692 (796)
++.|++.. .+.|+-.+|..
T Consensus 169 ~~aykKaL---eldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKAL---ELDPDNESYKS 187 (304)
T ss_pred HHHHHhhh---ccCCCcHHHHH
Confidence 88877776 67777655543
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.3e-05 Score=46.54 Aligned_cols=31 Identities=23% Similarity=0.592 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 036290 111 VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGF 141 (796)
Q Consensus 111 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 141 (796)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877664
No 148
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.64 E-value=0.079 Score=53.18 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=73.2
Q ss_pred hhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036290 484 YICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIG 563 (796)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 563 (796)
.+.+..+.-+...|+...|.++-....-|+...|-..+.+++..++|++-.++-.. +-++..|..++.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 34455566666777777788877777777778888888888888888766654322 223467777777777777
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036290 564 AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAF 607 (796)
Q Consensus 564 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 607 (796)
+...|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 777777766551 1245567777777777776643
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.0014 Score=57.79 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=77.7
Q ss_pred cCCHHHHHHHHhccCCC-CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHH
Q 036290 597 CGDIKGARMAFDQSFNS-NDV----IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ--ATFVSVMSACSHKGLVDK 669 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~ 669 (796)
.++...+...++..... |+. ...-.+...+...|++++|...|+...+....|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55666665555333333 211 22334556778889999999999999886533322 234456778888999999
Q ss_pred HHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHh
Q 036290 670 GCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEI 712 (796)
Q Consensus 670 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (796)
|+..++... +-...+..+....++|.+.|++++|...|++
T Consensus 104 Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP---DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc---CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999997754 2233456777889999999999999998875
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.61 E-value=0.0013 Score=67.42 Aligned_cols=133 Identities=16% Similarity=0.106 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDM 696 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 696 (796)
..-..|+..+...++++.|..+++++.+. .|+.. ..+++.+...++-.+|.+++++..+. .+-+...+..-++.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVA--VLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34456677778889999999999999984 47643 34677777788889999999998844 23346777777888
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 697 LSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
+.+.|+++.|.++.+++ ...|+ ..+|..|..+|.+.|+++.|...++.+--..+++...
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~ 304 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK 304 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence 99999999999999999 66775 4699999999999999999999998776554444333
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.59 E-value=0.19 Score=55.38 Aligned_cols=159 Identities=9% Similarity=0.091 Sum_probs=91.0
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHhCC---CCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHh--hHHHH-HHHH
Q 036290 451 FFYVVETCCRSENQQMVGQIHGAIIKTGF---SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMA--SWGAM-MSAL 524 (796)
Q Consensus 451 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l-i~~~ 524 (796)
.+.++..+.+.++.....+.+--+ +.|. +.+..+--.++..|+-.|-+..|.++++.+.-+++. |...+ ..-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LL-E~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLL-ENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH-HHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence 456667788888766433333222 2232 445566667899999999999999999988653322 22222 2344
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHH---HHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290 525 VHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHP---FVIKLGFNTEVYVASAVIDAYAKCGDIK 601 (796)
Q Consensus 525 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~ 601 (796)
...|++..+...++....---.--..+-. .|....+.|.+....+... ++..........+-+..++..+..++.+
T Consensus 518 ~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~ 596 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGT 596 (932)
T ss_pred HhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 45677777777766543211000111112 2222335565555554433 3333323334455667788888899998
Q ss_pred HHHHHHhccCC
Q 036290 602 GARMAFDQSFN 612 (796)
Q Consensus 602 ~A~~~~~~~~~ 612 (796)
+-...+ ..++
T Consensus 597 q~~~~~-~~~~ 606 (932)
T KOG2053|consen 597 QLLKLL-ESMK 606 (932)
T ss_pred HHHHHH-hccc
Confidence 888888 4443
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.58 E-value=0.13 Score=53.23 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=107.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCL 693 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 693 (796)
-..+|..+++.-.+..-...|..+|.+..+.+..+ +...+.+++.-++ .++.+.|..+|+.=.+.+|-. +.--...
T Consensus 365 ~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Y 441 (656)
T KOG1914|consen 365 LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKY 441 (656)
T ss_pred CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHH
Confidence 44678888888888888999999999999988888 7777888887665 578999999999877554433 3344466
Q ss_pred HHHHHhcCChHHHHHHHHhC---CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 036290 694 VDMLSRNGYLEDAKHVIEIM---PFQPSP--TVYRSLLSGCRIHGNKELGEWASEKLLLLLP 750 (796)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~---~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 750 (796)
++-+..-++-..|..+|++. +..|+. .+|..++.--..-||...+..+-++....-|
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 77788889999999999998 244543 7899999999999999999999998887766
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=8.8e-05 Score=45.13 Aligned_cols=31 Identities=39% Similarity=0.507 Sum_probs=25.4
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 036290 212 GCWNAMIGGYAHCGYGFEALNVVSSMLFEGI 242 (796)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 242 (796)
++||++|.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.00067 Score=54.74 Aligned_cols=93 Identities=23% Similarity=0.198 Sum_probs=58.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036290 655 VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRI 731 (796)
Q Consensus 655 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 731 (796)
..+...+...|++++|...++.+. ...|+ ...+..+..++...|++++|.+.+++. ...| +..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKAL---ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 334445555666666666666665 22333 345556666666667777777776665 2233 33466667777777
Q ss_pred cCChHHHHHHHHHHHccCC
Q 036290 732 HGNKELGEWASEKLLLLLP 750 (796)
Q Consensus 732 ~g~~~~A~~~~~~~~~~~p 750 (796)
.|+.+.|...++++++..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7777777777777777666
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.56 E-value=0.00025 Score=52.46 Aligned_cols=61 Identities=23% Similarity=0.195 Sum_probs=50.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
+...+...|++++|.+.+++. ...| +...|..+..++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567788999999999999988 5556 456888889999999999999999999999999875
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.12 Score=51.94 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036290 586 VASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG 665 (796)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 665 (796)
+.+..+.-+...|+...|.++. ...+-|+...|...+.+++..++|++-.++... .- ++.-|..++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~-k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLK-KEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHH-HHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCC
Confidence 4445566667788888888887 777888999999999999999999887665432 22 3366888889999999
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036290 666 LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGC 729 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 729 (796)
+..+|..+...+. +..-+..|.+.|++.+|.+.--+.+ |...+..+...+
T Consensus 252 ~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 252 NKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred CHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 9999888886632 2556788889999999988876654 444444444433
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.49 E-value=0.00023 Score=55.93 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHH
Q 036290 630 GLVSEAMEIFDKMKLANLQP---SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLED 705 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 705 (796)
|+++.|+.+++++.+. .| +...+..+..++.+.|++++|..+++. . ...|+ ......++.++.+.|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4555555555555552 23 222333345555555555555555554 1 22222 2333334555555555555
Q ss_pred HHHHHH
Q 036290 706 AKHVIE 711 (796)
Q Consensus 706 A~~~~~ 711 (796)
|++.++
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.00053 Score=70.65 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=71.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc
Q 036290 623 IMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN 700 (796)
Q Consensus 623 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 700 (796)
...+...|++++|+..|++..+ ..| +...|..+..+|...|++++|+..++++. .+.|+ ...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHh
Confidence 4456677888888888888887 556 55567777777888888888888888887 45665 66777788888888
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036290 701 GYLEDAKHVIEIM-PFQPSPTVYRSLL 726 (796)
Q Consensus 701 g~~~~A~~~~~~~-~~~p~~~~~~~l~ 726 (796)
|++++|++.+++. ...|+......++
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8888888888776 4556544443333
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.0034 Score=62.24 Aligned_cols=137 Identities=12% Similarity=0.177 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSA-CSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD 695 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 695 (796)
.+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888898889888999999999998532 2234445444433 33356777899999999866 3445677888899
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 696 MLSRNGYLEDAKHVIEIM-PFQPSP----TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|++....
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999999998 333333 5899999999999999999999999999988855443
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.40 E-value=0.0059 Score=52.84 Aligned_cols=92 Identities=7% Similarity=0.054 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV 694 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 694 (796)
...-.+...+...|++++|.++|+-+.. +.|. ..-|..|.-+|-..|++++|+..|.... -+.|| +..+..+.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHH
Confidence 3344555556677777888777777777 6673 3445555566667777888888877776 44555 67777777
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036290 695 DMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~ 713 (796)
.++...|+.+.|.+-|+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7777888888777777755
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.012 Score=58.77 Aligned_cols=142 Identities=16% Similarity=0.202 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHH
Q 036290 589 AVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH-GLVSEAMEIFDKMKLA----NLQP--SQATFVSVMSAC 661 (796)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p--~~~t~~~ll~~~ 661 (796)
..+..|...|++..|-+.+ ..+...|... |+++.|++.|++..+. | .+ -..++..+...+
T Consensus 99 ~A~~~y~~~G~~~~aA~~~------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCL------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHH------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence 3455677777777776666 4566666666 7888888887776542 2 12 123355566677
Q ss_pred hccCCHHHHHHHHHHhHhhcCC----CCCc-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH------HHHHHHHHHH
Q 036290 662 SHKGLVDKGCLLFKSMDSQYGM----QPSP-DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP------TVYRSLLSGC 729 (796)
Q Consensus 662 ~~~g~~~~A~~~~~~~~~~~~~----~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~l~~~~ 729 (796)
.+.|++++|.++|+++....-- +.+. ..+...+-++...|+...|.+.+++. ...|.. .....|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 7778888888888777643111 1111 12333444566677887887777776 233321 2334444444
Q ss_pred HhcCChHHHHHHHHH
Q 036290 730 RIHGNKELGEWASEK 744 (796)
Q Consensus 730 ~~~g~~~~A~~~~~~ 744 (796)
..||.+.-......
T Consensus 246 -~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 246 -EEGDVEAFTEAVAE 259 (282)
T ss_dssp -HTT-CCCHHHHCHH
T ss_pred -HhCCHHHHHHHHHH
Confidence 44565554444443
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.37 E-value=0.041 Score=57.60 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=45.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 036290 450 TFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGH 529 (796)
Q Consensus 450 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 529 (796)
+...+-.-+-+...+..|.++|..|-.. .++++.....++|++|..+-++.++--...|-....-++...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3333334444555666677777665433 3677778888888888888888776333333334444444455
Q ss_pred hhHHHHH
Q 036290 530 NHEAVTI 536 (796)
Q Consensus 530 ~~~A~~~ 536 (796)
+++|.+.
T Consensus 820 FeEAqkA 826 (1081)
T KOG1538|consen 820 FEEAQKA 826 (1081)
T ss_pred HHHHHHH
Confidence 5544443
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.37 E-value=0.016 Score=57.79 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=86.5
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHhccCCC----C----ChhHHHHHHHHH
Q 036290 556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC-GDIKGARMAFDQSFNS----N----DVIVYNTLIMAY 626 (796)
Q Consensus 556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~ 626 (796)
+..|...|++..+-+.+ ..+...|... |++++|.+.|++...- . -...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 34455666666554444 3456677777 8888888888655432 1 234566777889
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC------chHHHHHH
Q 036290 627 AHHGLVSEAMEIFDKMKLANLQP-----SQA-TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS------PDCYGCLV 694 (796)
Q Consensus 627 ~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~ 694 (796)
.+.|++++|.++|++....-... +.. .|...+-++...||+..|.+.+++.. ...|. ......|+
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~---~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC---SQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG---TTSTTSTTSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHH
Confidence 99999999999999988754331 111 22333446667899999999999987 33443 34455566
Q ss_pred HHHHh--cCChHHHHHHHHhCCCCCCH
Q 036290 695 DMLSR--NGYLEDAKHVIEIMPFQPSP 719 (796)
Q Consensus 695 ~~~~~--~g~~~~A~~~~~~~~~~p~~ 719 (796)
.++-. ...+++|+.-|+.+. +.|.
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~-~ld~ 268 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSIS-RLDN 268 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS----H
T ss_pred HHHHhCCHHHHHHHHHHHcccC-ccHH
Confidence 66653 235666666666663 3444
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.34 E-value=0.0021 Score=55.59 Aligned_cols=95 Identities=9% Similarity=-0.078 Sum_probs=80.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGC 729 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 729 (796)
..-.+..-+...|++++|..+|+-+. -+.|. ..-|..|.-++-..|++++|++.+... .+.| |+..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34445556678999999999999988 56777 677778999999999999999999998 4455 667888999999
Q ss_pred HhcCChHHHHHHHHHHHccCC
Q 036290 730 RIHGNKELGEWASEKLLLLLP 750 (796)
Q Consensus 730 ~~~g~~~~A~~~~~~~~~~~p 750 (796)
.+.|+.+.|++.|+.++..--
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998763
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.00051 Score=53.89 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=60.4
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 036290 664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSP-TVYRSLLSGCRIHGNKELGEWAS 742 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 742 (796)
.|+++.|+.+++++.+.....|+...+..+..+|.+.|++++|.+++++.+..|+. .....+..++.+.|++++|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57899999999999855222224455666899999999999999999885444544 44556677789999999999998
Q ss_pred HHH
Q 036290 743 EKL 745 (796)
Q Consensus 743 ~~~ 745 (796)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.31 E-value=0.0021 Score=51.22 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=66.3
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHcCC-CCCcchHHHHHHHhcccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 036290 316 NTLFGGFSENKNPGQTASLFHKFILSGS-RPNHVTFSILLRQCGKLL--------DLDLGLQLQCLALHCGFLDEENVTS 386 (796)
Q Consensus 316 ~~li~~~~~~~~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 386 (796)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-..+.+++.|...++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456677778999999999999999999 999999999999887654 2446677889999999999999999
Q ss_pred HHHHHHHh
Q 036290 387 SLIYMFCR 394 (796)
Q Consensus 387 ~ll~~~~~ 394 (796)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887764
No 167
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.30 E-value=0.006 Score=51.71 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG 691 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 691 (796)
.++..++..+...|++++|.+.|+++... .|+ ...+..+..++.+.|+++.|...++.+.....-.|. ...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 34556667777888888888888888763 333 234556777788888888888888888744222121 45677
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIM-PFQPS 718 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 718 (796)
.+..++.+.|++++|.+.++++ ...|+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 7778888888888888888877 33443
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.28 E-value=0.004 Score=56.89 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=77.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS--QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG 691 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 691 (796)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++.. ...|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---ELNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccHHHHH
Confidence 445666777777778888888888887776432222 2456666677777788888888877777 33454 55555
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
.+..++...|+...+..-++.. ...+++|.+.++++++.+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 6666676666655544333221 112677899999999999986
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.28 E-value=0.0031 Score=65.02 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=72.7
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLV 667 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 667 (796)
...+...|++++|++.|++.+.. .+...|..+..+|...|++++|+..+++..+ +.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCH
Confidence 45566778888888888777664 3667788888888888888888888888888 566 556677777888888888
Q ss_pred HHHHHHHHHhHhhcCCCCCchH
Q 036290 668 DKGCLLFKSMDSQYGMQPSPDC 689 (796)
Q Consensus 668 ~~A~~~~~~~~~~~~~~p~~~~ 689 (796)
++|+..|++.. .+.|+-..
T Consensus 87 ~eA~~~~~~al---~l~P~~~~ 105 (356)
T PLN03088 87 QTAKAALEKGA---SLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHH---HhCCCCHH
Confidence 88888888887 45666333
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.24 E-value=0.067 Score=56.10 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHH
Q 036290 429 DADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIH 471 (796)
Q Consensus 429 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 471 (796)
+-+...-+++|+++|-.|+..... ..|+-.|.+.+|.++|
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklF 655 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLF 655 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHH
Confidence 344555567777777777765432 2233344444444443
No 171
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.35 Score=51.54 Aligned_cols=125 Identities=7% Similarity=0.025 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC----cchHHHHHHHhcccCChHHHHHH
Q 036290 294 SSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN----HVTFSILLRQCGKLLDLDLGLQL 369 (796)
Q Consensus 294 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 369 (796)
-|++++|.+++-++.++|. .|..+.+.|++-...++++. .|-..| ...++.+-..++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888777664 24445555666555555432 111111 11344444444444455555555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 036290 370 QCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTF 436 (796)
Q Consensus 370 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 436 (796)
+..-... ...+.++.+...+++.+.+-..+++ +....-.+...+.+.|.-++|.+.|
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 4432111 1345555555556655555555543 2333445555666666666665554
No 172
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.19 E-value=0.33 Score=49.23 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=117.7
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHh-cc---CchHHHHHHHHHHHHhCCCC
Q 036290 514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILG-------TILNSCA-AI---GAYQRTKSIHPFVIKLGFNT 582 (796)
Q Consensus 514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~~~~-~~---~~~~~a~~~~~~~~~~~~~~ 582 (796)
..++..++....+.++...|.+.+.-+.-. .|+...-. .+-+..+ .- .+...-..+|+.....++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 445666777777777777777777666433 33332111 1111112 11 12223344455554444431
Q ss_pred chhHHHHHHH---HHHhcCC-HHHHHHHHhccCCC--CChhHHHHHH----HHHHh---cCChHHHHHHHHHHHHCCCCC
Q 036290 583 EVYVASAVID---AYAKCGD-IKGARMAFDQSFNS--NDVIVYNTLI----MAYAH---HGLVSEAMEIFDKMKLANLQP 649 (796)
Q Consensus 583 ~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~~--~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p 649 (796)
. .....|+. -+=+.|. -+.|+++++..+.- -|...-|.+. .+|.+ ...+.+-..+-+-+.+.|+.|
T Consensus 376 q-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 Q-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred H-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1 11122222 2233444 67778887433332 3554444332 22332 234555666666677888887
Q ss_pred CH----HHHHHHHHH--HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 036290 650 SQ----ATFVSVMSA--CSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYR 723 (796)
Q Consensus 650 ~~----~t~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 723 (796)
-. ..-|.|.+| +...|++.++.-+-.-+. .+.|++.+|..++-++....++++|..++.+++ |+..+++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 32 334445443 457899999988776666 689999999999999999999999999999974 5666665
Q ss_pred H
Q 036290 724 S 724 (796)
Q Consensus 724 ~ 724 (796)
+
T Consensus 530 s 530 (549)
T PF07079_consen 530 S 530 (549)
T ss_pred H
Confidence 4
No 173
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.19 E-value=0.0007 Score=50.74 Aligned_cols=64 Identities=23% Similarity=0.209 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHG-NKELGEWASEKLLLLLP 750 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 750 (796)
+..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 567788888889999999999998887 4555 4467888888888888 79999999999999888
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.17 E-value=0.0041 Score=49.95 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM 696 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 696 (796)
+..+...+...|++++|...+++..+ ..| +...+..+...+...|++++|.+.++.... ..|. ...+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE---LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcchhHHHHHHHH
Confidence 44555666667777777777777766 334 334555666667777777777777777662 2333 4566677777
Q ss_pred HHhcCChHHHHHHHHhC
Q 036290 697 LSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~ 713 (796)
+...|++++|...+++.
T Consensus 78 ~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 78 YYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 77777777777777654
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.023 Score=49.76 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=103.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHH
Q 036290 579 GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP---SQA 652 (796)
Q Consensus 579 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~ 652 (796)
...|++..-..|..++...|+..+|...|++.+.. .|....-.+.++....+++..|...++++.+.. | +..
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPD 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCC
Confidence 44567777778888999999999999999877776 488888888888899999999999999998843 4 233
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+...+.+.+...|++.+|...|+... ...|++..-......+.++|+..+|..-+...
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 45566788899999999999999988 56778766666778888999888776555443
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.00013 Score=54.52 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=31.8
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH
Q 036290 663 HKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYR 723 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 723 (796)
..|++++|+++|+++... .|+ ...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456666666666666522 343 455555666666666666666666666 3445543333
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.12 E-value=0.011 Score=53.92 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=67.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 036290 583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-ND----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVS 656 (796)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 656 (796)
....+..+...+...|++++|...|++.+.. ++ ...+..+...+.+.|++++|...+++..+ ..| +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 3445677788889999999999999777643 22 45788888999999999999999999998 566 4555666
Q ss_pred HHHHHhccCCHHHHHH
Q 036290 657 VMSACSHKGLVDKGCL 672 (796)
Q Consensus 657 ll~~~~~~g~~~~A~~ 672 (796)
+...+...|+...+..
T Consensus 112 lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 112 IAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHcCChHhHhh
Confidence 6777777777544443
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.11 E-value=0.0045 Score=49.47 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=65.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHhhHHHHHHhhccCC--------CchHHHHHHHHHHHhcCCCChHHHH
Q 036290 215 NAMIGGYAHCGYGFEALNVVSSMLFEGI-TMDKYTFINALQGCSLVA--------DFDIGRQIHGLIIRSEVECSISIVN 285 (796)
Q Consensus 215 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 285 (796)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. +....+.+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 899999999999987643 2345677888999999999999999
Q ss_pred HHHHhhhc
Q 036290 286 ALIDMYIK 293 (796)
Q Consensus 286 ~li~~~~~ 293 (796)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.11 E-value=0.0054 Score=63.19 Aligned_cols=116 Identities=11% Similarity=0.106 Sum_probs=86.8
Q ss_pred ChHHHHHHHHhhhcCCCHHHHHHHHhhcCC-C-----CcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHH
Q 036290 280 SISIVNALIDMYIKSSGMDYAFKVFERMAD-K-----DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSIL 353 (796)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~l 353 (796)
+......+++.+....+++.+..++.+... | -..+..++|+.|.+.|..+.++++++.=...|+-||..||+.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444455556666666666666666665543 1 1235568899999999999999999988889999999999999
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036290 354 LRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRC 395 (796)
Q Consensus 354 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 395 (796)
|..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999998888777666666665555555554
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.08 E-value=0.0093 Score=61.53 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=86.1
Q ss_pred CCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh--CCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC----CCHhh
Q 036290 443 GVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT--GFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER----LDMAS 516 (796)
Q Consensus 443 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 516 (796)
+.+.+......+++.+....+++.+..++-..... ....-+.+..++++.|.+.|..+.+..+++.-.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45566777778888888888888888888777664 3333344556777777777777777777766554 77777
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290 517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI 562 (796)
Q Consensus 517 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 562 (796)
+|.+|..+.+.|++..|.++...|..++...++.|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7888888888888888888877777666666667776666666554
No 181
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.08 E-value=0.42 Score=48.48 Aligned_cols=448 Identities=13% Similarity=0.066 Sum_probs=223.7
Q ss_pred ccCChhhHHHHHHHHHHhCC-CCC----chhhHHHHHHHHccCChhHHHHHhcccCC-CCcchHHHHHHHH--HhcCCch
Q 036290 56 NLKSRVLGTQVHGHIVKLGF-TND----IFLQNNLIAMYSKCGYFGWGLRVFDEMAE-RNLVSWTLIVSAA--IQNGEFD 127 (796)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~--~~~~~~~ 127 (796)
..+++..+..+|.++.+.-- .|. ....+.++++|....- +.-...+.+..+ -....|-.+..++ -+.+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nl-d~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNL-DLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 56788899999988876521 111 2456788888875542 222222222222 1234566666553 3678888
Q ss_pred HHHHHHHHHHHC--CCCC------------CcccHHHHHHHHhccCChhHHHHHHHHHHHhc----CCCChhHhhHHHHH
Q 036290 128 MGLKMYVDMKTN--GFMP------------NEFAVGSVMKVCVSMGASEFGYSIHCFALKIR----IEKNPFVGCSVLNF 189 (796)
Q Consensus 128 ~a~~~~~~m~~~--~~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~ 189 (796)
.|++.|....++ +.+| |-.-=+....++...|++.+++.+++.++..= ..-+..+|+.++-+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 998888887665 3222 12222344556678888888888888877654 34788888888777
Q ss_pred HHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccC--CCchHHHH
Q 036290 190 YAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLV--ADFDIGRQ 267 (796)
Q Consensus 190 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~ 267 (796)
++++=-++ +-+.+...=..-|-.+|..|.+.=+ .++.-.-..+.|....+..++....-. .....-.+
T Consensus 177 lsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 177 LSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HhHHHHHH----HHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 77642111 1111111111224444544443211 111111112345555555555554432 23344556
Q ss_pred HHHHHHHhcCCCChH-HHHHHHHhhhcCCCHHHHHHHHhhcCC--------CCcchHHHHHHHHHhCCCccHHHHHHHHH
Q 036290 268 IHGLIIRSEVECSIS-IVNALIDMYIKSSGMDYAFKVFERMAD--------KDVISWNTLFGGFSENKNPGQTASLFHKF 338 (796)
Q Consensus 268 ~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~l~~~m 338 (796)
+++...+..+.|+-. +...|+.-+.+ +.+++..+.+.+.. .=+.++..++....+.++...|-+.+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 666666666777543 33444444444 44555444443321 12334445555555555555555444443
Q ss_pred HHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhCCCCChh
Q 036290 339 ILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCR----CGAVEMAHSVFDNVSYKNIT 414 (796)
Q Consensus 339 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~ 414 (796)
..- .|+...-.-++ .+. ..+.+..+. .-+..+-..+++.....|+.
T Consensus 325 ~~l--dp~~svs~Kll-------------------------ls~---~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 325 KIL--DPRISVSEKLL-------------------------LSP---KVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred Hhc--CCcchhhhhhh-------------------------cCH---HHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 321 22221100000 000 111222221 11222333444444433322
Q ss_pred ---hHHHHH---HHHHhcCC-chHHHHHHHHHHhcCCcccH-----HHHHHHHHHhcc---cCcHHHHHHHHHHHHHhCC
Q 036290 415 ---TWNELL---SGYCFNCC-DADVLKTFCNIWESGVEVNG-----CTFFYVVETCCR---SENQQMVGQIHGAIIKTGF 479 (796)
Q Consensus 415 ---~~~~li---~~~~~~g~-~~~a~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~ 479 (796)
.-..|+ .-+.+.|. -++|+++++...+ +.|.. .++..+=.+|.+ ...+..-..+-+.+.+.|+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 111222 23445555 7788888888776 23322 222222233322 2445556666666777887
Q ss_pred CCCch----hHhHHHH--HHHhcCCcchHHHH--HhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 036290 480 SSCGY----ICSSLIK--SYVNFGQLDNSFEF--SNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYI 551 (796)
Q Consensus 480 ~~~~~----~~~~l~~--~~~~~g~~~~A~~~--~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t 551 (796)
+|-.. .-|.|.+ .+...|++.++.-. +-.-..|.+.+|..+.-++....++++|...+.++ +|+..+
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~ 527 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERM 527 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhh
Confidence 77443 3333332 23456777766533 22233467777777777777777777777777764 555555
Q ss_pred HH
Q 036290 552 LG 553 (796)
Q Consensus 552 ~~ 553 (796)
+.
T Consensus 528 ~d 529 (549)
T PF07079_consen 528 RD 529 (549)
T ss_pred HH
Confidence 44
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.05 E-value=0.0068 Score=55.17 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=44.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 036290 656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGC 729 (796)
Q Consensus 656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 729 (796)
.+...+...|++++|...|++.... .|+ ..++..+..++...|++++|.+.+++. ...|+ ..++..+...+
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l---~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRL---EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3333344444455555544444411 111 123444444555555555555554444 22221 22333333333
Q ss_pred H-------hcCChH-------HHHHHHHHHHccCCCCC
Q 036290 730 R-------IHGNKE-------LGEWASEKLLLLLPKND 753 (796)
Q Consensus 730 ~-------~~g~~~-------~A~~~~~~~~~~~p~~~ 753 (796)
. ..|+++ +|..++++++..+|++.
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 3 445544 66777778888888643
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.008 Score=58.44 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=66.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHH
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS----PTVYRS 724 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ 724 (796)
|...+....+.|++++|...|+.+.+. .|+ +..+..++.+|...|++++|...|+++ ...|+ ...+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 444444445567777777777777744 344 245666777888888888888887777 22232 345555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 725 LLSGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 725 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
++.++...|+.+.|...++++++..|++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 666677788888888888888888887654
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.90 E-value=0.13 Score=45.32 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=97.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHH
Q 036290 614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCY 690 (796)
Q Consensus 614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~ 690 (796)
|++..--.|..+....|+..+|...|++...--+.-|......+.++....++...|...++.+.+- .|+ +.+.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~---~pa~r~pd~~ 163 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY---NPAFRSPDGH 163 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc---CCccCCCCch
Confidence 5666666788999999999999999999876434458888888999999999999999999998733 344 5666
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290 691 GCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKL 745 (796)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 745 (796)
-.+.+.|...|++++|..-|+.. ...|++..--....-+.++|+..+|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77889999999999999999887 56677644333334456677665555444433
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.022 Score=54.61 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=73.1
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CHH
Q 036290 648 QP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG---YLEDAKHVIEIM-PFQP-SPT 720 (796)
Q Consensus 648 ~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~ 720 (796)
.| |...|..|...|...|+++.|...|.... .+.|+ +..+..+..++.... ...++.++++++ ...| |..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 45 77778888888888888888888888777 34444 556666666655432 456777788777 4555 345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 721 VYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
....|...+...|++++|...++.+++..|.+..-
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 55566666788888888888888888877766554
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.0071 Score=54.91 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=71.9
Q ss_pred HHHhhc--CCCCcchHHHHHHHHHh-----CCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccC-------------
Q 036290 302 KVFERM--ADKDVISWNTLFGGFSE-----NKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLL------------- 361 (796)
Q Consensus 302 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~------------- 361 (796)
..|+.. ..++-.+|..+|..+.+ .|..+=....++.|.+.|+.-|..+|+.||..+-+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 33566666666666654 3666777778888899999999999999998886532
Q ss_pred ---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290 362 ---DLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGA 397 (796)
Q Consensus 362 ---~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 397 (796)
+-+-|.+++++|...|+.||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456788899999999999999999999988866554
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.87 E-value=0.015 Score=52.91 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP--SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..+++.. .+.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al---~~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL---ERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCcHHHHHH
Confidence 3455666677777888888888888887643222 12467777778888888888888888877 33454 455556
Q ss_pred HHHHHH-------hcCChHHHHHHHHh
Q 036290 693 LVDMLS-------RNGYLEDAKHVIEI 712 (796)
Q Consensus 693 l~~~~~-------~~g~~~~A~~~~~~ 712 (796)
+...+. +.|++++|...+++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 666666 77777766555544
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.86 E-value=0.038 Score=54.88 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290 515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNS-CAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA 593 (796)
Q Consensus 515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 593 (796)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777776432 2222233222222 22345666677777776664 33366677777777
Q ss_pred HHhcCCHHHHHHHHhccCCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNS-N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMS 659 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 659 (796)
+.+.|+.+.|..+|+..+.. + ....|...+..-.+.|+.+.+.++.+++.+ ..|+......+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 77778888888888666665 2 234677777777777888888888777777 4555444444443
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.85 E-value=0.0021 Score=48.74 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=49.6
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 694 VDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
-..|.+.+++++|.++++++ ...| +...|.....++.+.|++++|.+.++++++..|+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 35677888888888888888 4555 456777788888888999999999999998888776653
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.84 E-value=0.00075 Score=44.92 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
.+|..+...+...|++++|+++++++++.+|+|+.++..|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46788999999999999999999999999999998887664
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.84 E-value=0.0026 Score=47.44 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=21.9
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 629 HGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 629 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
.|++++|+++|+++.+ ..| +...+..+..+|.+.|++++|..+++++.
T Consensus 4 ~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555444 233 33334444444445555555555554444
No 192
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.84 E-value=0.1 Score=52.82 Aligned_cols=125 Identities=15% Similarity=0.064 Sum_probs=68.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---------ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh
Q 036290 629 HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS---------HKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR 699 (796)
Q Consensus 629 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 699 (796)
.|+.++|+.++..+....-.++..||..+.+.|- .....++|+..|.+.- .+.|+.+.--.++.++..
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLML 271 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHH
Confidence 4445555555544333333344444444333221 1122666777666554 555664443334444444
Q ss_pred cCChHH----HHHHH---Hh-C---C---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 700 NGYLED----AKHVI---EI-M---P---FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 700 ~g~~~~----A~~~~---~~-~---~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
.|...+ ..++- .. . + -..+-..+.+++.++.-.||.+.|.+.++++++..|+.-...
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 443222 22222 11 1 1 224556678889999999999999999999999987655443
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=1.1 Score=48.63 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 036290 587 ASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGL 666 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 666 (796)
.+--+.-+...|+..+|.++- ...+-||-..|-.-+.+++..++|++-+++-+.++ ...-|.....+|.+.|+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~-~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLK-SDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHHHHccchHHHHHHH-HhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 333444445556666666655 55555566566656666666666655444433332 12334445556666666
Q ss_pred HHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 036290 667 VDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVI 710 (796)
Q Consensus 667 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 710 (796)
.++|.+++-+.. |.. -.+.+|.+.|++.+|.++-
T Consensus 760 ~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 666666554432 111 3455555666655555543
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.78 E-value=0.015 Score=52.94 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=77.3
Q ss_pred HHHhcC--CCCCHhhHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------------
Q 036290 504 EFSNGA--ERLDMASWGAMMSALVHQ-----GHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI-------------- 562 (796)
Q Consensus 504 ~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------------- 562 (796)
..|+.. ...+-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445554 346777788888877654 66777888889999999999999999999988652
Q ss_pred --CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036290 563 --GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI 600 (796)
Q Consensus 563 --~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 600 (796)
.+.+-|.+++++|...|+-||..++..+++.+++.+..
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 34567899999999999999999999999988776653
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.76 E-value=0.5 Score=45.70 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=37.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HH---HHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290 520 MMSALVHQGHNHEAVTIFHSLVEAGEKPDEY-IL---GTILNSCAAIGAYQRTKSIHPFVIKLGFN 581 (796)
Q Consensus 520 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 581 (796)
....+...|++++|.+.|+++... -|+.. .. -.+..++.+.++++.|...++...+..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 344456677888888888887664 33322 11 23445666777777777777777765444
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.65 E-value=0.075 Score=57.45 Aligned_cols=48 Identities=17% Similarity=0.018 Sum_probs=22.9
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 663 HKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..|++++|...++++. .+.|+...|..+...+...|+.++|.+.+++.
T Consensus 432 ~~g~~~~A~~~l~rAl---~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 432 VKGKTDEAYQAINKAI---DLEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hcCCHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555554444 23344444444455555555555555444443
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.64 E-value=0.046 Score=45.66 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=66.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHH
Q 036290 621 TLIMAYAHHGLVSEAMEIFDKMKLANLQPS--QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLV 694 (796)
Q Consensus 621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~ 694 (796)
.+..++-..|+.++|+.+|++..+.|+... ...+..+..++...|++++|..++++....+ |+ ......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 345567778999999999999999887754 3456667788889999999999999888552 43 22223345
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036290 695 DMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~ 713 (796)
.++...|+.++|++.+-..
T Consensus 83 l~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 6777889999999887654
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.57 E-value=1.4 Score=47.18 Aligned_cols=153 Identities=11% Similarity=0.001 Sum_probs=88.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC-----ChhhHHHHHHHHHhcCCchHHHH
Q 036290 360 LLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYK-----NITTWNELLSGYCFNCCDADVLK 434 (796)
Q Consensus 360 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~ 434 (796)
-|++++|.+++-++-++. .-|..+.+.|++-...++++.-... -...|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677776666555443 2355556666666666666553321 12356666677766666777766
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCH
Q 036290 435 TFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDM 514 (796)
Q Consensus 435 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 514 (796)
.|..-... ...+.++.+..++++.+.+.. .++.+....-.+.+++.+.|.-++|.+.+-+-..|.
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk- 882 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK- 882 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-
Confidence 66543211 122333444333443333322 346677777788888888888888877765554442
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHH
Q 036290 515 ASWGAMMSALVHQGHNHEAVTIFHSL 540 (796)
Q Consensus 515 ~~~~~li~~~~~~~~~~~A~~~~~~m 540 (796)
+.+..|...++|.+|.++-+..
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhc
Confidence 2345566667777777766654
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.09 Score=52.39 Aligned_cols=87 Identities=17% Similarity=0.037 Sum_probs=44.2
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 036290 662 SHKGLVDKGCLLFKSMDSQYGMQPS-----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGN 734 (796)
Q Consensus 662 ~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~ 734 (796)
.+.|++..|.+.+.+.. ++.|+ ...|........+.|+..+|+.--++. .+.|.. ..|..-..++.-.++
T Consensus 260 fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655 44444 333444445555666666666655554 222211 122222333444566
Q ss_pred hHHHHHHHHHHHccCCC
Q 036290 735 KELGEWASEKLLLLLPK 751 (796)
Q Consensus 735 ~~~A~~~~~~~~~~~p~ 751 (796)
+++|.+-++++.+..-+
T Consensus 337 ~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 66666666666665544
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.48 E-value=0.007 Score=45.22 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-CHHHHHHHHHHhH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG-LVDKGCLLFKSMD 678 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g-~~~~A~~~~~~~~ 678 (796)
+...|..+...+...|++++|+..|++..+ +.| +...|..+..++...| ++++|++.+++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 345666777777777777777777777777 456 4455666667777777 6777777777766
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.47 E-value=0.028 Score=54.75 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ----ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
.|...+..+.+.|++++|...|+.+.+ ..|+. ..+..+..+|...|++++|...|+.+.+.+.-.|. +..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 455555555667889999999999888 45644 45667778888899999999999998865433333 556666
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM-PFQPSP 719 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 719 (796)
++.++...|+.++|.+++++. ...|+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 777888889999999998887 344543
No 202
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.44 E-value=1.3 Score=45.11 Aligned_cols=143 Identities=14% Similarity=0.152 Sum_probs=113.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH-HH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN-LQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCY-GC 692 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~ 692 (796)
-...|...+.+-.+..-.+.|.++|-+..+.| +.++...+++++.-++ .|+...|..+|+.-.. ..||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~---~f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL---KFPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH---hCCCchHHHHH
Confidence 44578888888888888999999999999998 4578888999887655 6788999999987663 34564333 35
Q ss_pred HHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM--PFQPS--PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.+.-+.+-++-+.|..+|++. .+..+ ..+|..++.--..-|+...+..+-+++.+.-|+....-+.++.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sr 544 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHH
Confidence 566778899999999999966 23333 4789999999999999999999999999999988666555544
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.42 E-value=0.23 Score=47.98 Aligned_cols=68 Identities=10% Similarity=-0.029 Sum_probs=39.0
Q ss_pred HHHHccCChhHHHHHhhccCC--CCce-eH---HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 036290 188 NFYAKLGDVAAAERVFYSISS--DDVG-CW---NAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQG 255 (796)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 255 (796)
..+.+.|++++|.+.|+.+.. |+.. .. -.+..++-+.+++++|...+++..+....-....+...+.+
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 334556777777777777654 2221 11 23445667778888888888887765433333334333433
No 204
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.41 E-value=0.0079 Score=44.28 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=26.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
..+...|++++|.+.|++..+. .| +...+..+..++...|++++|..+|+++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555552 24 33344444455555555555555555554
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=1.9 Score=46.87 Aligned_cols=337 Identities=15% Similarity=0.088 Sum_probs=151.1
Q ss_pred HCCCCCCHhhHHH-----HHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCC---CHHHHHHHHhhcCC-
Q 036290 239 FEGITMDKYTFIN-----ALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSS---GMDYAFKVFERMAD- 309 (796)
Q Consensus 239 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~- 309 (796)
.-|++.+..-|.. +|.-+...+.+..|.++-..+-..-..- ..++......+.+.. +.+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666665544 3444555666666666665553222222 455555555555542 23334445555554
Q ss_pred -CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcC----CCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhH
Q 036290 310 -KDVISWNTLFGGFSENKNPGQTASLFHKFILSG----SRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENV 384 (796)
Q Consensus 310 -~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 384 (796)
....+|..+.+.....|+.+-|..+++.=...+ +-.+-.-+...+.-+...|+.+....++-.+...- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 355677777777777788877777765421111 00122233444555555555555555544443320 0000
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCchHHHHHHH--HHH----hcCCcccHHHHHHHHHH
Q 036290 385 TSSLIYMFCRCGAVEMAHSVFDNVSY-KNITTWNELLSGYCFNCCDADVLKTFC--NIW----ESGVEVNGCTFFYVVET 457 (796)
Q Consensus 385 ~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~--~m~----~~g~~p~~~t~~~ll~~ 457 (796)
+. -...+...|..++....+ .|..+ +..+.+.++-.+++.-|. ... ..|..|+. ...-.+
T Consensus 581 l~------~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 581 LF------MTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred HH------HHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 00 000111122222222111 11100 001111222222221111 000 01222222 222333
Q ss_pred hcccCcHHHHHHH----------HHHHH-HhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHH
Q 036290 458 CCRSENQQMVGQI----------HGAII-KTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVH 526 (796)
Q Consensus 458 ~~~~~~~~~a~~~----------~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 526 (796)
+.+........+. .+.+. +.|..-..-+.+-.+.-+...|+...|.++-.+.+-||-..|-.-+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 3333331111111 11111 123333334444455555566666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036290 527 QGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMA 606 (796)
Q Consensus 527 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 606 (796)
.+++++-.++-+.++ .+.-|..+..+|.+.|+.++|.+++..... +.-.+.+|.+.|++.+|.+.
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 666665554444322 134555566666666666666665543311 11345566666666666554
Q ss_pred H
Q 036290 607 F 607 (796)
Q Consensus 607 ~ 607 (796)
-
T Consensus 793 A 793 (829)
T KOG2280|consen 793 A 793 (829)
T ss_pred H
Confidence 4
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.051 Score=52.25 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=80.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc---CCHHHHHHHHHHhHhhcCCCCC-ch
Q 036290 614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK---GLVDKGCLLFKSMDSQYGMQPS-PD 688 (796)
Q Consensus 614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~~~p~-~~ 688 (796)
.|...|-.|...|...|+++.|..-|.+..+ +.| +...+..+..++..+ ..-.++..+|+++. ...|+ +.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al---~~D~~~ir 228 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL---ALDPANIR 228 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH---hcCCccHH
Confidence 3888888999999999999999998888887 566 455555555555332 24567888888888 55666 67
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 036290 689 CYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSG 728 (796)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 728 (796)
....|...+...|++.+|...++.| ..-|....+..++..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 7777888888899999999999888 444444455555543
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.26 E-value=0.0035 Score=48.29 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 688 DCYGCLVDMLSRNGYLEDAKHVIEIM-----PFQ---PS-PTVYRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
.+|+.+..+|.+.|++++|++.+++. ... |+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666777777777777777777665 122 22 346677777788888888888888877754
No 208
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.36 Score=48.37 Aligned_cols=151 Identities=11% Similarity=0.068 Sum_probs=70.9
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCchHHHHHHHHHHHHhCCCCchh-HHHH----------
Q 036290 523 ALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNS--CAAIGAYQRTKSIHPFVIKLGFNTEVY-VASA---------- 589 (796)
Q Consensus 523 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~---------- 589 (796)
++.-.|+.++|.+.-....+.. ++ ..+..++++ +-..++.+.+...+++..+.++..... ....
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 3445567777766665554331 11 223333332 234556666666666655544331111 0001
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 036290 590 VIDAYAKCGDIKGARMAFDQSFNS------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACS 662 (796)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~ 662 (796)
-..-..+.|++..|.+.|.+.+.. ++...|........+.|+.++|+.--++..+ +.|.. ..|..-..++.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHH
Confidence 112233456666666666555443 2334444455555556666666666555554 33311 11222223344
Q ss_pred ccCCHHHHHHHHHHhH
Q 036290 663 HKGLVDKGCLLFKSMD 678 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~ 678 (796)
..++|++|.+.++...
T Consensus 333 ~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666665555
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.03 E-value=0.07 Score=45.07 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMK---------------LANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY 681 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 681 (796)
.++..++.++++.|+.+....+++..= .....|+..+..+++.+|+..|++..|+++++...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555555554432 11233555555666666666666666666666666555
Q ss_pred CCCCCchHHHHHHH
Q 036290 682 GMQPSPDCYGCLVD 695 (796)
Q Consensus 682 ~~~p~~~~~~~l~~ 695 (796)
+++.+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 55555555555444
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.21 Score=46.68 Aligned_cols=143 Identities=6% Similarity=-0.027 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchH-----HHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDC-----YGC 692 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-----~~~ 692 (796)
..++++..+.-.|.+.-.+..+.+.++..-+-+......|.+.-.+.|+.+.|..+|++..+. .-..+... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445666777777888888888999988543346777778888888899999999999987755 22333222 333
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIMP-FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
....|.-+.++.+|...+.+.. ..| |+...|.-.-+..-.|+...|.+..+.+++..|.....-.++.|
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 3445666778888888888873 223 44444555555666789999999999999999987666655555
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.91 E-value=0.055 Score=47.80 Aligned_cols=71 Identities=20% Similarity=0.380 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCchHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS----QYGMQPSPDCY 690 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 690 (796)
....++..+...|++++|..+++++.. ..| |...|..+|.++...|+...|.+.|+++.+ +.|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 445666777788888888888888888 667 777888888888888888888888887753 45788876554
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.89 E-value=1.6 Score=41.05 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=35.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290 521 MSALVHQGHNHEAVTIFHSLVEAGE--KPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN 581 (796)
Q Consensus 521 i~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 581 (796)
...+...|++.+|.+.|+++...-. +--....-.+..++.+.|+++.|...++.+++.-+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3455667778888888887765421 111233445566677777777777777776664433
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.77 E-value=2.4 Score=42.35 Aligned_cols=215 Identities=13% Similarity=0.063 Sum_probs=117.1
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCchhHH--HHHHHHH--H-hcCC
Q 036290 526 HQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIK-LGFNTEVYVA--SAVIDAY--A-KCGD 599 (796)
Q Consensus 526 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~--~~li~~~--~-~~g~ 599 (796)
+.|..+.|.+.-.+.-..- +--.......+...|..|+++.|+++++.-.. .-+.++..-- ..|+.+- . -..+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3455555555444443221 11223445555555666666666665554443 2222222111 1111110 0 0122
Q ss_pred HHHHHHHHhccCCC-CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 036290 600 IKGARMAFDQSFNS-NDVI-VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSM 677 (796)
Q Consensus 600 ~~~A~~~~~~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 677 (796)
...|...-.+..+- ||.. .-..-..++.+.|+..++-++++.+-+.. |....+.. ....+.|+ .++.-+++.
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHHHHH
Confidence 33444333233332 3332 22334567888888888888888888743 44433322 22344554 333334443
Q ss_pred HhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHc
Q 036290 678 DSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIH-GNKELGEWASEKLLL 747 (796)
Q Consensus 678 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 747 (796)
.+--.++|+ .+....+..+-...|++..|..--+.. ...|....|-.|...-... ||-.++.+.+-+.++
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 333356676 666677778888888888887666665 5678888888787775444 888888888888876
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.76 E-value=0.05 Score=41.07 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=32.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
..|.+.+++++|.++++++.. ..| +...+......+...|++++|.+.|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345566666666666666666 445 34445555566666666666666666666
No 215
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.74 E-value=0.18 Score=42.12 Aligned_cols=57 Identities=4% Similarity=-0.060 Sum_probs=35.3
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCccc--HHHHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 036290 421 SGYCFNCCDADVLKTFCNIWESGVEVN--GCTFFYVVETCCRSENQQMVGQIHGAIIKT 477 (796)
Q Consensus 421 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 477 (796)
.++-..|+.++|+.+|++....|.... ...+..+-+++...|++++|..+++.....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566777777777777777665544 223444555566666666666666666543
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.62 Score=43.67 Aligned_cols=141 Identities=9% Similarity=0.034 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHH----
Q 036290 414 TTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSL---- 489 (796)
Q Consensus 414 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 489 (796)
...+.++..+.-.|.+.-.+.++++..+...+.++.....+.+...+.|+.+.|...++...+..-..+....+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3556677777778888888899999888776777778888888888899999999999877664334443333333
Q ss_pred -HHHHHhcCCcchHHHHHhcCCCC---CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290 490 -IKSYVNFGQLDNSFEFSNGAERL---DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL 556 (796)
Q Consensus 490 -~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 556 (796)
...|.-.+++..|...++++... ++..-|.-.-+..-.|+..+|++.++.|.+. .|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 33455566777777777777653 4444444444445567888888888888765 55555544433
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.63 E-value=0.31 Score=41.64 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHccCCCCCc
Q 036290 735 KELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 735 ~~~A~~~~~~~~~~~p~~~~ 754 (796)
...|...|+.+++.-|++.-
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 56888889999999888654
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.56 E-value=2.9 Score=41.82 Aligned_cols=189 Identities=13% Similarity=0.112 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHhc---cCchHHHHHHHHHHHHhCCCCchhHHH-
Q 036290 516 SWGAMMSALVHQGHNHEAVTIFHSLVEA-GEKPDEY--ILGTILNSCAA---IGAYQRTKSIHPFVIKLGFNTEVYVAS- 588 (796)
Q Consensus 516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~- 588 (796)
.+...+...|..|+|+.|+++++.-+.. -+.++.. .-..|+.+-.. ..+...|...-.+. ..+.|+..--.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA--NKLAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--hhcCCccchHHH
Confidence 4455566666666666666666654332 2233321 12222222111 11223333332222 23344433222
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHhccC
Q 036290 589 AVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKL-ANLQP-SQATFVSVMSACSHKG 665 (796)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p-~~~t~~~ll~~~~~~g 665 (796)
.-..++.+.|+..++-.+++.+-+. |.+..+.. ..+.+.|+ .+..-+++... ..++| +..+...+..+-...|
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 2345677777777777777444332 33333322 22344444 23333333222 11556 4456666777778888
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc-CChHHHHHHHHhC
Q 036290 666 LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRN-GYLEDAKHVIEIM 713 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 713 (796)
++..|..--+... ...|....|..|.+.-... |+-.++..++-+.
T Consensus 344 e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 344 EFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred chHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 8888887777666 5678888888888877665 8888888888766
No 219
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.54 E-value=0.029 Score=34.57 Aligned_cols=33 Identities=30% Similarity=0.115 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290 720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
..|..+..++...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467888999999999999999999999999985
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=95.44 E-value=0.086 Score=46.06 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=36.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChH
Q 036290 626 YAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLE 704 (796)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 704 (796)
+-..|++++|..+|.-+.- ..| +..-+..|..+|-..++++.|+..|.....- + .-|+..+-....++...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 3445555555555555544 333 2222233333333445555555555444311 1 111222333455555555555
Q ss_pred HHHHHHHhC
Q 036290 705 DAKHVIEIM 713 (796)
Q Consensus 705 ~A~~~~~~~ 713 (796)
.|...|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 555555444
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.43 E-value=0.024 Score=35.00 Aligned_cols=33 Identities=24% Similarity=0.138 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290 720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
.+|..+..++...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578889999999999999999999999999974
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=0.15 Score=48.45 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=52.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQP-SPTVYRSLLS 727 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~ 727 (796)
|+.-+. +.+.|++..|...|....+.+--.+- +..+.-|..++...|++++|..+|..+ +..| -+..+-.|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444333 23345566666666666533211000 333444666666666666666666555 2222 2244555555
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 728 GCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 728 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
+....|+.++|...++++.+.-|+.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 566666666666666666666665544
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.31 E-value=2.8 Score=40.13 Aligned_cols=198 Identities=16% Similarity=0.107 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHH-
Q 036290 549 EYILGTILNSCAAIGAYQRTKSIHPFVIKL-GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIM- 624 (796)
Q Consensus 549 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~- 624 (796)
...+......+...+....+...+...... ........+......+...++...+.+.+...... + +.........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555555556666655555554442 22334445555556666666677777777444442 1 2122223333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHH
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQP----SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLS 698 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 698 (796)
.+...|+++.|...+++... ..| ....+......+...++.+.+...+.... ...++ ...+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL---KLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH---hhCcccchHHHHHhhHHHH
Confidence 67788888888888888855 333 22333444444667788899999888887 33344 567778888888
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 699 RNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 699 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
..++++.|...+... ...|+ ...+..+...+...|+.+.+...+++.++..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888889998888877 44454 455555555555667789999999999888886
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.16 E-value=0.057 Score=41.45 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhh---cCC-CCC-chHHHHHHHHHHhcCChHHHHHHHHh
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQ---YGM-QPS-PDCYGCLVDMLSRNGYLEDAKHVIEI 712 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (796)
+|+.+...|...|++++|+..|++..+- .|- .|+ ..++..+..++...|++++|++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556666666677777777666666532 111 122 45667777777778888887777765
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.15 E-value=0.48 Score=47.31 Aligned_cols=126 Identities=12% Similarity=-0.019 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHH
Q 036290 586 VASAVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQ-PSQA 652 (796)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~ 652 (796)
.|..|...|.-.|+++.|+...+..+.- . .-..+..+..++.-.|+++.|.+.|+.-... |-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444444444556677666555332221 1 2234555666666667777777666654321 211 1223
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHh---hcC-CCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDS---QYG-MQPSPDCYGCLVDMLSRNGYLEDAKHVIE 711 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 711 (796)
+.-+|..+|.-..+++.|+.++.+=.. ..+ ..-....+.+|..+|..-|..++|+.+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344455555555555566555543221 000 11112334445555555555555554443
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.14 E-value=0.51 Score=50.68 Aligned_cols=131 Identities=18% Similarity=0.102 Sum_probs=87.0
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHhHhhcCC--CCCchHH
Q 036290 618 VYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVSVM-SACSHKGLVDKGCLLFKSMDSQYGM--QPSPDCY 690 (796)
Q Consensus 618 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~ 690 (796)
.|...+..++. ....+.|.++++.+.+ .-|+...|...- +.+...|+.++|++.|+++.....- +....++
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 34444444443 3467889999999988 568877765544 4567789999999999876521011 1124455
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHH-HHhcCCh-------HHHHHHHHHHHccCC
Q 036290 691 GCLVDMLSRNGYLEDAKHVIEIMP-F-QPSPTVYRSLLSG-CRIHGNK-------ELGEWASEKLLLLLP 750 (796)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~~~p 750 (796)
--+...+.-.++|++|.+.+.++. . .-...+|.-+..+ +...|+. ++|..+++++-....
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 667788888999999999999883 2 2234455545444 4566877 788888887766544
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.10 E-value=0.22 Score=42.13 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHh--------------hcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC--
Q 036290 650 SQATFVSVMSACSHKGLVDKGCLLFKSMDS--------------QYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-- 713 (796)
Q Consensus 650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--------------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 713 (796)
|..++..++.++++.|+.+....+++..-. .....|+..++.+++.+|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 457888999999999999999998876531 1235577888999999999999999999999877
Q ss_pred --CCCCCHHHHHHHHHHHHhcC
Q 036290 714 --PFQPSPTVYRSLLSGCRIHG 733 (796)
Q Consensus 714 --~~~p~~~~~~~l~~~~~~~g 733 (796)
+++-+..+|..|+.-+...-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 56656789998887754443
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.87 E-value=2 Score=43.73 Aligned_cols=163 Identities=16% Similarity=0.091 Sum_probs=85.9
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHh---cCCHHHHHHHHhccCCC---CChhHHHHHHH
Q 036290 554 TILNSCAAIGAYQRTKSIHPFVIKLG---FNTEVYVASAVIDAYAK---CGDIKGARMAFDQSFNS---NDVIVYNTLIM 624 (796)
Q Consensus 554 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~---~~~~~~~~li~ 624 (796)
.++-+|....+++...++++.+...- +.-+..+--...-++.+ .|+.++|++++...+.. ++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666666666666666665531 22223333344455555 66777777666442322 45666666655
Q ss_pred HHHh---------cCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccC-CHHHHHHHH---HHhHhhcCC---CC
Q 036290 625 AYAH---------HGLVSEAMEIFDKMKLANLQPSQAT---FVSVMSACSHKG-LVDKGCLLF---KSMDSQYGM---QP 685 (796)
Q Consensus 625 ~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g-~~~~A~~~~---~~~~~~~~~---~p 685 (796)
.|.. ....++|...|.+.-+ +.||..+ +..|+....... .-.+..++- .....+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5432 1236778888877766 4565543 233333322211 111222222 121111122 22
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290 686 SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS 718 (796)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 718 (796)
+-..+.+++.+..-.|+.++|.+..++| ..+|.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3344567888889999999999999998 44444
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.82 E-value=0.083 Score=54.19 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP----DCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+...++.+..+|.+.|++++|+..|++.. .+.|+. ..|..+..+|...|+.++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55667888888888888888888888877 567773 34778888888888888888888877
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=94.73 E-value=0.49 Score=48.89 Aligned_cols=142 Identities=15% Similarity=0.088 Sum_probs=87.9
Q ss_pred CHHHHHHHHhccCCC----C-ChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 036290 599 DIKGARMAFDQSFNS----N-DVIVYNTLIMAYAHH---------GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSH 663 (796)
Q Consensus 599 ~~~~A~~~~~~~~~~----~-~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 663 (796)
..+.|+.+|.+.+.. | ....|..+..++... ....+|.++.++..+ +.| |......+..+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 456777778776622 2 234444444443321 124456666666666 455 66666666666677
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH---HHHHHHHHHHHhcCChHHH
Q 036290 664 KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEI-MPFQPSP---TVYRSLLSGCRIHGNKELG 738 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~---~~~~~l~~~~~~~g~~~~A 738 (796)
.|+++.|...|++.. .+.|+ ..+|......+.-+|+.++|.+.+++ +...|.. .+....+..|+.+ ..+.|
T Consensus 351 ~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred hcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 777888888888877 67787 66666667777778888888888887 4666644 2233334345444 46667
Q ss_pred HHHHHHHH
Q 036290 739 EWASEKLL 746 (796)
Q Consensus 739 ~~~~~~~~ 746 (796)
+.++-+-.
T Consensus 427 ~~~~~~~~ 434 (458)
T PRK11906 427 IKLYYKET 434 (458)
T ss_pred HHHHhhcc
Confidence 77665533
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.33 Score=48.75 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 036290 652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVY-RSLLSG 728 (796)
Q Consensus 652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~ 728 (796)
.+++.+.-++.+.+++..|++...... .+.|+ +..+..-..++...|+++.|+..|+++ .+.|+...- ..++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvL---e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVL---ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHH---hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 456777778889999999999998887 45555 777777889999999999999999998 678866544 445544
Q ss_pred HHhcC-ChHHHHHHHHHHHccCCC
Q 036290 729 CRIHG-NKELGEWASEKLLLLLPK 751 (796)
Q Consensus 729 ~~~~g-~~~~A~~~~~~~~~~~p~ 751 (796)
-.+.. ..+...++|..|+...+.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 44443 344558899999976654
No 232
>PRK15331 chaperone protein SicA; Provisional
Probab=94.58 E-value=0.68 Score=40.60 Aligned_cols=84 Identities=10% Similarity=-0.040 Sum_probs=46.1
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHH
Q 036290 661 CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP--FQPSPTVYRSLLSGCRIHGNKEL 737 (796)
Q Consensus 661 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 737 (796)
+...|++++|..+|+-+.. ..|. ..-+..|..++-..|++++|+..+.... ...|+........++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 3456666666666665551 2222 3344455555666666666666665541 12233444455566666666666
Q ss_pred HHHHHHHHHc
Q 036290 738 GEWASEKLLL 747 (796)
Q Consensus 738 A~~~~~~~~~ 747 (796)
|+..|+.+++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.54 E-value=0.68 Score=43.47 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=25.6
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNS-N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
...+...|++++|.+.|+..... | -....-.++.++-+.|+++.|...++++.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444556666666665333321 1 112333445555556666666666666555
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.50 E-value=12 Score=43.41 Aligned_cols=157 Identities=15% Similarity=0.176 Sum_probs=86.3
Q ss_pred CCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 036290 497 GQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVI 576 (796)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 576 (796)
+++++|+.-+..+. ...|...+.---++|-+.+|+.++ .|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 34555554444443 223333444444567777776654 45665555555444321 11
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--H
Q 036290 577 KLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT--F 654 (796)
Q Consensus 577 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~ 654 (796)
+. ..|.--.-+|.++|+.++|++.+ ...|+|.+|+.+..++.. .-+... -
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~-------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a 1002 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAY-------------------KECGDWREALSLAAQLSE---GKDELVILA 1002 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHH-------------------HHhccHHHHHHHHHhhcC---CHHHHHHHH
Confidence 10 11122233566677777776655 567788888877776643 112221 2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 655 VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 655 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..|..-+...++.-+|-++..+..++ ....+..|++...|++|..+....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 45566677777777777776665533 234556677777788887776655
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.45 E-value=0.19 Score=47.37 Aligned_cols=109 Identities=10% Similarity=0.060 Sum_probs=79.1
Q ss_pred HHHhcccC--CCCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC------------
Q 036290 99 LRVFDEMA--ERNLVSWTLIVSAAIQN-----GEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMG------------ 159 (796)
Q Consensus 99 ~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~------------ 159 (796)
.+.|+..+ ++|-.+|-+++..+... ++.+-....++.|.+.|+.-|..+|+.||..+-+-.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44566555 57777888888877643 556666778889999999999999999998875532
Q ss_pred ----ChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCCh-hHHHHHhhccC
Q 036290 160 ----ASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDV-AAAERVFYSIS 207 (796)
Q Consensus 160 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 207 (796)
.-+-+..++++|...|+.||..+-..|++++++.|-. .+..++.-.|+
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2234678888999999999999888888888887653 33344444444
No 236
>PRK09687 putative lyase; Provisional
Probab=94.44 E-value=5.7 Score=39.34 Aligned_cols=121 Identities=11% Similarity=-0.035 Sum_probs=62.7
Q ss_pred CCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCc----hHHHHHHHHHHHCCCCCCcccHHH
Q 036290 75 FTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEF----DMGLKMYVDMKTNGFMPNEFAVGS 150 (796)
Q Consensus 75 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~t~~~ 150 (796)
..+|..+....+.++.+.|..+-...+..-...+|...-...+.++.+.|+. .++..++..+... .|+...-..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3566677777777777777644443333334556666666777777777764 3466666666332 244444444
Q ss_pred HHHHHhccCChhH--HHHHHHHHHHhcCCCChhHhhHHHHHHHccCChh
Q 036290 151 VMKVCVSMGASEF--GYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVA 197 (796)
Q Consensus 151 ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 197 (796)
.+.+++..+.... -....+.....-..++..+....+.++++.|+.+
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ 159 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA 159 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH
Confidence 5555544432111 1112222222222334555555555555555433
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.25 E-value=0.36 Score=41.22 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=27.5
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 661 CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 661 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..+.|++++|.+.|+.+..++-..|- ....-.|+.+|.+.|++++|...+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34455566666666655544333332 333444555555566665555555554
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.24 Score=49.74 Aligned_cols=74 Identities=19% Similarity=0.095 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 688 DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ-PSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.++..|.-++.+.+++.+|++..++. ... +|......-..++...|+++.|+..|+++++++|+|-.+..-|+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45778899999999999999999887 444 466777788899999999999999999999999999888766655
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.10 E-value=0.14 Score=45.29 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSPTV 721 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~ 721 (796)
+...++..+...|++++|..+++.+. ...|. ...|..++.+|.+.|+..+|.+.|+++ ++.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l---~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRAL---ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH---HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34556667778889999999998888 34555 678888999999999999998888766 67777654
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.08 E-value=0.35 Score=45.69 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=80.9
Q ss_pred HHHHHhhccC--CCCceeHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCC----------
Q 036290 198 AAERVFYSIS--SDDVGCWNAMIGGYAHC-----GYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVA---------- 260 (796)
Q Consensus 198 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---------- 260 (796)
..+..|...+ +.|..+|-+.+..+... +..+=....++.|.+.|+.-|..+|+.||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 46777888888777543 556666777899999999999999999998865432
Q ss_pred ------CchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCH-HHHHHHHhhcC
Q 036290 261 ------DFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGM-DYAFKVFERMA 308 (796)
Q Consensus 261 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 308 (796)
.-.-+..++++|..+|+-||..+-..|++++.+.+-. .+..++.-.|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2344778889999999999999988899888877653 34444444444
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.02 E-value=0.52 Score=44.92 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP--SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV 694 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 694 (796)
.|+.-+..+ +.|++..|...|....+..-.- ....+--|..++...|++++|..+|..+.++++-.|. +..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466665544 4567999999999998853110 2233556788999999999999999999988776666 68888999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290 695 DMLSRNGYLEDAKHVIEIM-PFQPSP 719 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~-~~~p~~ 719 (796)
.+..+.|+.++|..++++. .--|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999988 334543
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.01 E-value=2.6 Score=43.88 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCH--HHHHHHHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMP-F-QPSP--TVYRSLLSG 728 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~ 728 (796)
+-..+..++.+.|+.++|++.++++.+.+...-...+...|+.++...+.+.++..++.+.. . -|.. ..|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33456677788999999999999998553222235567789999999999999999999884 1 3444 345554433
Q ss_pred HHhcCCh---------------HHHHHHHHHHHccCCCCCcce
Q 036290 729 CRIHGNK---------------ELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 729 ~~~~g~~---------------~~A~~~~~~~~~~~p~~~~~~ 756 (796)
....||. ..|.+.+.++++.+|.-+.+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 4433431 346788999999999877663
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.79 E-value=17 Score=42.39 Aligned_cols=118 Identities=12% Similarity=0.060 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036290 586 VASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG 665 (796)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 665 (796)
.|.-.++.--+.|-+.+|+.++ ..-.+.-...|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly-~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~ 979 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALY-KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECG 979 (1265)
T ss_pred ccHHHHHHHHhcccchhhhhee-ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhc
Confidence 3444555556677777777777 222222333455555666677788888777766533 233567888899
Q ss_pred CHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 036290 666 LVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQP 717 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 717 (796)
+|.+|+.+..++. ..-+ ..+-..|+.-+...|++-+|.++..+..-.|
T Consensus 980 dWr~~l~~a~ql~----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 980 DWREALSLAAQLS----EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred cHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 9999999887664 1122 2223568888888999999999988874443
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.59 E-value=3.9 Score=35.56 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=34.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRN-GYLEDAKHVIEIMPFQPSPTVYRSLLSGCR 730 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 730 (796)
...+++.|.+.+.++++..++.++. . +...+..+... ++.+.|.+++.+- .++..|..++..+.
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 4445556666666666666665543 1 22233333333 6666666666653 24556666665554
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.38 E-value=1.3 Score=36.63 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=59.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcC
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNG 701 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 701 (796)
+.+..|+.+.|++.|.+... +-| +...||.-.+++.-+|+.++|++-+++..+-.|-+.. -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45667788888888887777 555 6677888888888888888888887777754333322 223444455566778
Q ss_pred ChHHHHHHHHhC
Q 036290 702 YLEDAKHVIEIM 713 (796)
Q Consensus 702 ~~~~A~~~~~~~ 713 (796)
+-+.|..-|+..
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 888887777765
No 246
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.06 E-value=0.15 Score=31.29 Aligned_cols=33 Identities=30% Similarity=0.142 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290 720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
.+|..+...+...|+.++|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 367788888999999999999999999999853
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.04 E-value=10 Score=37.66 Aligned_cols=18 Identities=17% Similarity=-0.241 Sum_probs=11.3
Q ss_pred HHhcCChHHHHHHHHHHH
Q 036290 729 CRIHGNKELGEWASEKLL 746 (796)
Q Consensus 729 ~~~~g~~~~A~~~~~~~~ 746 (796)
+.+.+++..|.+.++-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 445667777777766543
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.04 E-value=0.55 Score=38.81 Aligned_cols=89 Identities=20% Similarity=0.129 Sum_probs=70.2
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCH--HHHHHHHHHHHhc
Q 036290 660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPSP--TVYRSLLSGCRIH 732 (796)
Q Consensus 660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~--~~~~~l~~~~~~~ 732 (796)
+++..|+++.|++.|.+.. .+-|. +..|+.-..++.-+|+.++|++-+++. +-+... ..|-.-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 5678999999999999988 56665 889999999999999999999999887 212111 2344445558889
Q ss_pred CChHHHHHHHHHHHccCCC
Q 036290 733 GNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 733 g~~~~A~~~~~~~~~~~p~ 751 (796)
|+.+.|+.-|+.+-++...
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 9999999999988776543
No 249
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.98 E-value=4.5 Score=36.54 Aligned_cols=128 Identities=16% Similarity=0.023 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHH
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVS--VMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGC 692 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ 692 (796)
|..++.... .+.. +.....+++....-.....++.. +...+...|++++|..-++... +...| ...--.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l---~~t~De~lk~l~~lR 131 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL---AQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---ccchhHHHHHHHHHH
Confidence 344444433 2333 44445555555322222222322 3456788899999999988776 22233 223335
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIMPFQPSP--TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
|.+.....|.+++|+.+++... .++. .....-...+...||.++|+..|+++++.++++
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 6778888999999999998763 2222 223444566889999999999999999987543
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=92.96 E-value=3.1 Score=43.23 Aligned_cols=144 Identities=11% Similarity=0.035 Sum_probs=96.5
Q ss_pred chHHHHHHHHHHHH-hCCCCch-hHHHHHHHHHHh---------cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcC
Q 036290 564 AYQRTKSIHPFVIK-LGFNTEV-YVASAVIDAYAK---------CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHG 630 (796)
Q Consensus 564 ~~~~a~~~~~~~~~-~~~~~~~-~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g 630 (796)
..+.|..+|.+... ....|+- ..|..+..++.. .....+|.+..+..+.. .|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 45678888888773 3444443 344444333322 22345566666555544 47777778888778888
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCChHHH
Q 036290 631 LVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 631 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A 706 (796)
+++.|...|++... +.||. .+|......+.-.|+.++|.+.+++.. .+.|. .......++.|+.. ..++|
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al---rLsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL---QLEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 89999999999998 77854 456666666778999999999999877 56676 44455556677654 45777
Q ss_pred HHHHHhC
Q 036290 707 KHVIEIM 713 (796)
Q Consensus 707 ~~~~~~~ 713 (796)
++++-+-
T Consensus 427 ~~~~~~~ 433 (458)
T PRK11906 427 IKLYYKE 433 (458)
T ss_pred HHHHhhc
Confidence 7776544
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.87 E-value=3.7 Score=35.72 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDM 696 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 696 (796)
.....++..+...+.......+++.+...+ ..+....+.++..|++.+ .+...+.++. .++.......++.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 344567777777888888889999888776 346667888888887653 3444455542 1234445557778
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHH
Q 036290 697 LSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIH-GNKELGEWASEK 744 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 744 (796)
+.+.+.++++..++.+++. |...+..+..+ ++++.|.+.+++
T Consensus 79 c~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 8888888888888888753 23333344444 777777777765
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.86 E-value=3 Score=44.19 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=100.2
Q ss_pred HHHHcCChhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290 523 ALVHQGHNHEAVTIFHSL-VEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIK 601 (796)
Q Consensus 523 ~~~~~~~~~~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 601 (796)
...-.++++++.++...- .-.. -| ..-...++.-+.+.|-.+.|.++...- ..-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~-i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPN-IP-KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhccc-CC-hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHH
Confidence 344567777766666411 1111 12 344667777777788888888765432 23456778889999
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290 602 GARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY 681 (796)
Q Consensus 602 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 681 (796)
.|.++. +.+ ++...|..|.......|+++-|++.|++..+ |..|+--|...|+.+.-.++.+....+
T Consensus 336 ~A~~~a-~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 336 IALEIA-KEL--DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHC-CCC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHH-Hhc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 999877 333 3677999999999999999999999988754 556666677788877777776666533
Q ss_pred CCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 036290 682 GMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQP 717 (796)
Q Consensus 682 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 717 (796)
| -++....++.-.|+.++..+++.+.+..|
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 2 24555556666788888888887765433
No 253
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.57 E-value=6.3 Score=34.75 Aligned_cols=131 Identities=13% Similarity=0.121 Sum_probs=85.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHH
Q 036290 613 SNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYG 691 (796)
Q Consensus 613 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 691 (796)
+.....|..-++ +++.+..++|+.-|..+.+.|...-. .............|+...|...|.++-.. .|.+....
T Consensus 56 s~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~r 131 (221)
T COG4649 56 SKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGR 131 (221)
T ss_pred ccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhh
Confidence 344445554444 46677889999999999887755311 11222233456788999999999998744 44443332
Q ss_pred HH-----HHHHHhcCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 692 CL-----VDMLSRNGYLEDAKHVIEIMPFQ--P-SPTVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 692 ~l-----~~~~~~~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
-+ ..++...|.+++....++-+... | ....-..|.-+-.+.||+..|+..|+.+..
T Consensus 132 d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 132 DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22 33466788999888888877322 2 223345666677899999999999998876
No 254
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.51 E-value=0.39 Score=47.91 Aligned_cols=261 Identities=14% Similarity=0.087 Sum_probs=155.2
Q ss_pred HHHHhcCCcchHHHHHhcCCCCCH-------hhHHHHHHHHHHcCChhHHHHHHHH-H---HHcCCCC-CHHHHHHHHHH
Q 036290 491 KSYVNFGQLDNSFEFSNGAERLDM-------ASWGAMMSALVHQGHNHEAVTIFHS-L---VEAGEKP-DEYILGTILNS 558 (796)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~-m---~~~g~~p-~~~t~~~ll~~ 558 (796)
.-+++.|+...-..+|+...+..+ ..|..+..+|.-.+++++|++.-.. + +..|-+. ...+...|-+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 347888888888888887776322 2355566666666777777765432 1 1111111 11222233333
Q ss_pred HhccCchHHHHHH----HHHHHHhCCC-CchhHHHHHHHHHHhcCC--------------------HHHHHHHHhccCCC
Q 036290 559 CAAIGAYQRTKSI----HPFVIKLGFN-TEVYVASAVIDAYAKCGD--------------------IKGARMAFDQSFNS 613 (796)
Q Consensus 559 ~~~~~~~~~a~~~----~~~~~~~~~~-~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~~ 613 (796)
+--.|.+++|.-. ++...+.|-. .....+-.+...|...|+ ++.|.++|.+-++-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445566665543 2223333321 233445556666665443 23344444322211
Q ss_pred ----CC----hhHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290 614 ----ND----VIVYNTLIMAYAHHGLVSEAMEIFDKM----KLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 614 ----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
.| -..|..|...|--.|+++.|+..-+.= ++.|-+. ....+..+..++.-.|+++.|.+.|+....-
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11 123455555555667888888665432 3333222 2345677778888889999999998875421
Q ss_pred ---cCC-CCCchHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 681 ---YGM-QPSPDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 681 ---~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
.|- ........+|...|.-..+++.|+.++.+- ...-....+.+|..++...|..++|....+..+++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 111 122344556888888888999999998775 12334578999999999999999999999999999
Q ss_pred CCC
Q 036290 749 LPK 751 (796)
Q Consensus 749 ~p~ 751 (796)
.-+
T Consensus 345 s~e 347 (639)
T KOG1130|consen 345 SLE 347 (639)
T ss_pred HHH
Confidence 864
No 255
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.38 E-value=0.6 Score=48.16 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=49.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036290 582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-ND-V---IVYNTLIMAYAHHGLVSEAMEIFDKMKLA 645 (796)
Q Consensus 582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 645 (796)
.+...++.+..+|.+.|++++|+..|++.+.. |+ . .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667788888888888888888888776664 43 2 35888888888888888888888888874
No 256
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.33 E-value=12 Score=37.24 Aligned_cols=141 Identities=20% Similarity=0.169 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036290 531 HEAVTIFHSLVEAGEKPDEYILGTILNSCAA--IG----AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR 604 (796)
Q Consensus 531 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 604 (796)
++.+.+++.|.+.|+.-+..+|-+....... .. ...++..+++.|++..+-
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f----------------------- 135 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF----------------------- 135 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc-----------------------
Confidence 4456666777777777776665543322222 22 234566666666664321
Q ss_pred HHHhccCCCCChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC---CHHHHHHHHHH
Q 036290 605 MAFDQSFNSNDVIVYNTLIMAYAHHGL----VSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG---LVDKGCLLFKS 676 (796)
Q Consensus 605 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g---~~~~A~~~~~~ 676 (796)
+..++-..+..++.. ..++ .+.++.+|+.+.+.|+.. |..-+.+-+-++.... ...++..+++.
T Consensus 136 ------LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 136 ------LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred ------ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 111222333333222 1111 366778888888888887 3333333333333222 24578888888
Q ss_pred hHhhcCCCCCchHHHHHHHHHHhcCCh
Q 036290 677 MDSQYGMQPSPDCYGCLVDMLSRNGYL 703 (796)
Q Consensus 677 ~~~~~~~~p~~~~~~~l~~~~~~~g~~ 703 (796)
+.+. |+++....|..++-+-.-.+..
T Consensus 208 l~~~-~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 208 LKKN-GVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHc-CCccccccccHHHHHHhcCCch
Confidence 8866 8998887777665544444433
No 257
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.27 E-value=2.1 Score=37.43 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=34.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHhh
Q 036290 626 YAHHGLVSEAMEIFDKMKLANLQPSQATFVSV-MSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
-.+.++.+.+..+++.+.- +.|.......+ ..-+...|+|.+|+.+|+++..+
T Consensus 20 al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3456677777777777777 66655443332 23456677788888887777633
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.06 E-value=2.3 Score=42.06 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=60.9
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHH----
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNS------N--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL----ANLQPSQATF---- 654 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~---- 654 (796)
..+..-.+.++.+++.|+..+.- + ....+..|...|.+..++++|..+..+..+ .++.--..-|
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 33344444455555555433321 1 234556666666666666666655444432 1221111112
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHhHhh---cCCCCC-chHHHHHHHHHHhcCChHHHHHHHHh
Q 036290 655 -VSVMSACSHKGLVDKGCLLFKSMDSQ---YGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEI 712 (796)
Q Consensus 655 -~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (796)
..+.-++...|.+..|.+..++..+- +|-+|. ..+...+.+.|...|+.+.|+.-++.
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22234556666666666666655432 233333 44555666777777777666665554
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.84 E-value=0.24 Score=30.97 Aligned_cols=28 Identities=25% Similarity=0.098 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 721 VYRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888885543
No 260
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.73 E-value=0.13 Score=35.47 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290 723 RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 759 (796)
..+.-++.+.|+++.|++..+.+++.+|+|..+..+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4466678899999999999999999999988765444
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.70 E-value=3.2 Score=41.10 Aligned_cols=199 Identities=15% Similarity=0.067 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHH--hCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------Chh
Q 036290 550 YILGTILNSCAAIGAYQRTKSIHPFVIK--LGFN---TEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN-------DVI 617 (796)
Q Consensus 550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~ 617 (796)
.+|..+..+.++.|.++.+...--.-++ .... .-...|..+.+++.+..++.+++.+-+..+..| .-.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3445555556666666555433211111 0111 112344455566666666666666654333332 112
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCCHHHHHHHHHHhH---hhcCCCCCchH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANL---QP--SQATFVSVMSACSHKGLVDKGCLLFKSMD---SQYGMQPSPDC 689 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~p~~~~ 689 (796)
...++..++...+.++++++.|+...+--- +| .-..+..|-..|....++++|.-+..+.. ..+++.--...
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 334566777778889999999998765211 12 23457788888889999999887766543 22333222223
Q ss_pred HH-----HHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 690 YG-----CLVDMLSRNGYLEDAKHVIEIM-------PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 690 ~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
|. .|.-++...|+.-+|.+.-++. |..| .......+.+.|...||.+.|..-||.+...
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 33 3455677788888888777765 3222 2234567788899999999999999988753
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.64 E-value=7.6 Score=40.30 Aligned_cols=144 Identities=9% Similarity=-0.045 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP---SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDC 689 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~ 689 (796)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+..+...|+-++|+..++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777777788887777777776643221 2222333344555677777777777766642 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 690 YGCLVDMLSRNGYLEDAKHV-IEIMPFQPSPTVYRSLLSGCRIH------GNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
...+...+.. ..+..... ........-...+..+..-+... ++.+++...++.+.+.+|....+|..++.
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 1111111000 00000000 00000000012233333333333 78888899999999999988887777666
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.45 E-value=1.6 Score=42.46 Aligned_cols=79 Identities=15% Similarity=0.356 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCchHH
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS----QYGMQPSPDCY 690 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 690 (796)
..++..++..+...|+++.+.+.++++.. ..| +...|..++.+|.+.|+...|+..|+.+.+ ..|+.|.+.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34556677777777888888888888877 566 777788888888888888888877777654 34777776666
Q ss_pred HHHHHH
Q 036290 691 GCLVDM 696 (796)
Q Consensus 691 ~~l~~~ 696 (796)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 555444
No 264
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=12 Score=34.86 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=8.4
Q ss_pred ccCCHHHHHHHHHHhH
Q 036290 663 HKGLVDKGCLLFKSMD 678 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~ 678 (796)
..+++.+|+.+|+++.
T Consensus 166 ~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=30 Score=38.84 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=67.4
Q ss_pred hHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHH----HHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 036290 82 QNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSA----AIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVS 157 (796)
Q Consensus 82 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 157 (796)
...-++.+.+..-++-|..+-..-..+ ...--.+.+. +-+.|++++|...|-+-... +.| ..+++-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 344556666666677776655533222 2222222222 34577888887777665422 222 234555555
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccC
Q 036290 158 MGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSIS 207 (796)
Q Consensus 158 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 207 (796)
......-..+++.+.+.|+... ..-+.|+..|.+.++.+.-.+..+...
T Consensus 410 aq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6666666677777777775433 333567777777777777766666554
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=10 Score=36.93 Aligned_cols=137 Identities=7% Similarity=0.069 Sum_probs=72.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-Ch---hHHHHHHHHHHhcCChHHHH
Q 036290 561 AIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN-DV---IVYNTLIMAYAHHGLVSEAM 636 (796)
Q Consensus 561 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~ 636 (796)
..|+...+..+++........ +....-.++.+|...|+.+.|..++ ..++.. .. .....-|..+.+.....+..
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL-~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAIL-AALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 444555555555554443333 2344455666777777777777777 444432 11 11222344445555544444
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 036290 637 EIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGY 702 (796)
Q Consensus 637 ~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 702 (796)
.+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++..-.-|...-..|+..+.--|.
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444443 45 55555566666777777777776655555442223334555566666666663
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.11 E-value=25 Score=37.86 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=42.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hcCChHHHHHHHHhCCC------CChhhHHHHHHHHHhcCCchH
Q 036290 359 KLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFC-RCGAVEMAHSVFDNVSY------KNITTWNELLSGYCFNCCDAD 431 (796)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~ 431 (796)
+.|..+.+.++|+.-... ++.+...|...+..++ ..|+.+...+.|+.... .....|...|.--..++++..
T Consensus 91 klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 445555555555544432 3344444444443333 33455555555554432 234456666665566666667
Q ss_pred HHHHHHHHHh
Q 036290 432 VLKTFCNIWE 441 (796)
Q Consensus 432 a~~~~~~m~~ 441 (796)
...++++.++
T Consensus 170 v~~iyeRile 179 (577)
T KOG1258|consen 170 VANIYERILE 179 (577)
T ss_pred HHHHHHHHHh
Confidence 7777766665
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.85 E-value=8.8 Score=32.20 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=71.6
Q ss_pred HhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchh---HhHHHHHHHhcCCcc
Q 036290 424 CFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYI---CSSLIKSYVNFGQLD 500 (796)
Q Consensus 424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 500 (796)
.-.|..++..++..+...+ .+..-++.+|--....-+-+...+.++.+ |--.|... ...++.+|...|...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcchH
Confidence 3457777777777776653 23344454554444333444444443333 22222221 123444444444332
Q ss_pred hHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 036290 501 NSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGF 580 (796)
Q Consensus 501 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 580 (796)
......+..+...|+-+.-.+++.++... -++++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 87 --------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 --------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred --------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 23344566777778888777787777653 367777777888888888888888888887777765
Q ss_pred C
Q 036290 581 N 581 (796)
Q Consensus 581 ~ 581 (796)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.65 E-value=0.91 Score=29.94 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP 649 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 649 (796)
+|..+...|...|++++|.++|++..+ ..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCc
Confidence 345556666666666666666666666 445
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.64 E-value=14 Score=36.52 Aligned_cols=144 Identities=11% Similarity=0.011 Sum_probs=72.3
Q ss_pred cCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCCHHHH
Q 036290 597 CGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFV----SVMSACSHKGLVDKG 670 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~A 670 (796)
.|+..+|...+++.+.. | |...++---.+|...|+.+.-...++++... ..||...|. ++.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34555555555444443 2 5555555556666666666666666665542 233433222 222333456666666
Q ss_pred HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 036290 671 CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP--FQPS----PTVYRSLLSGCRIHGNKELGEWASE 743 (796)
Q Consensus 671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (796)
++.-++.. .++|. .-.-.++...+.-.|++.++.+++.+-. .+.. ...|-...-.+...+.++.|+++|+
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 66665554 33333 3333445555666666666666665541 1100 1122233333444466666666666
Q ss_pred H
Q 036290 744 K 744 (796)
Q Consensus 744 ~ 744 (796)
+
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.61 E-value=16 Score=34.84 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=42.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIM-PFQPS----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
.+.+-|.+.|.+..|..-+++| .--|+ ...+-.+..+|...|-.++|....+-+-...|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3556788889988888888887 21222 24556677788889999998887666555556554
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.60 E-value=16 Score=39.47 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=94.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCchhHHH
Q 036290 519 AMMSALVHQGHNHEAVTIFHSLVEAG-EKPDE-----YILGTILNSCAA----IGAYQRTKSIHPFVIKLGFNTEVYVAS 588 (796)
Q Consensus 519 ~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 588 (796)
.++....-.|+-+.+++.+.+-.+.+ +.-.. -.|..++..++. ..+.+.+.+++..+.+.= |+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 34444455566666666666654322 11111 123333333332 346677888888777653 3444443
Q ss_pred H-HHHHHHhcCCHHHHHHHHhccCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036290 589 A-VIDAYAKCGDIKGARMAFDQSFNSN------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSAC 661 (796)
Q Consensus 589 ~-li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 661 (796)
. -.+.+...|++++|++.|+..+... ....+--+.-.+.-..+|++|.+.|.++.+.. .-+..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 3 3566777899999999996555431 22334445556778899999999999998843 22455565555444
Q ss_pred -hccCCH-------HHHHHHHHHhH
Q 036290 662 -SHKGLV-------DKGCLLFKSMD 678 (796)
Q Consensus 662 -~~~g~~-------~~A~~~~~~~~ 678 (796)
...|+. ++|.++|.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 456777 88888888775
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.54 E-value=4.2 Score=43.19 Aligned_cols=106 Identities=10% Similarity=0.050 Sum_probs=64.2
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCc
Q 036290 350 FSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCD 429 (796)
Q Consensus 350 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (796)
...+++.+-+.|..+.|+++-.+-. .-.+...+.|+++.|.++.++.. +...|..|.....+.|+.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 5556666666666666666532211 12445566788888877766554 556788888888888888
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhC
Q 036290 430 ADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTG 478 (796)
Q Consensus 430 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 478 (796)
+-|.+.|.+..+ |..++--+.-.|+.+...++.+.....|
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888888776543 3444445555666666666666655555
No 274
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.51 E-value=16 Score=34.65 Aligned_cols=184 Identities=18% Similarity=0.118 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCChhHHHHHHHHHHhcCChHHHHHH
Q 036290 564 AYQRTKSIHPFVIKLGFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFN----SNDVIVYNTLIMAYAHHGLVSEAMEI 638 (796)
Q Consensus 564 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~ 638 (796)
....+...+......... ............+...+++..+...+..... ......+......+...+++..+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444433322 1356677778888899999999888855543 24566777778888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhHhhcCCCC----CchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 639 FDKMKLANLQPSQATFVSVMS-ACSHKGLVDKGCLLFKSMDSQYGMQP----SPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 639 ~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+.........+ ......... .+...|+++.|...+++... ..| ....+......+...++.++|...+.+.
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99998843333 122223333 78899999999999999852 333 2444445555577889999999999888
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 714 -PFQPS--PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 714 -~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
...++ ...+..+...+...++.+.|...+..+.+..|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 44444 577888888899999999999999999999997
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=34 Score=38.39 Aligned_cols=118 Identities=9% Similarity=0.033 Sum_probs=71.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHhhcCCCCcc---hHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccC
Q 036290 285 NALIDMYIKSSGMDYAFKVFERMADKDVI---SWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLL 361 (796)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 361 (796)
..-++.+++...++.|..+-+.-..+... ....-.+.+.+.|++++|...|-+-... +.| ..+|.-+....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 34456666666777777776654332111 1222233456778888888877664321 222 23455555555
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 362 DLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS 409 (796)
Q Consensus 362 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 409 (796)
....-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+...
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 566666677777777753 44555678888888888888777776655
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.23 E-value=0.66 Score=45.17 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=28.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
.-|.+.|.+++|+..|.+-.. +.| |.+++..-..+|.+..++..|..-...+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 345555556666665555554 445 55555555555555555555554444433
No 277
>PRK09687 putative lyase; Provisional
Probab=90.03 E-value=21 Score=35.35 Aligned_cols=234 Identities=11% Similarity=-0.020 Sum_probs=113.8
Q ss_pred CchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036290 482 CGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHN----HEAVTIFHSLVEAGEKPDEYILGTILN 557 (796)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~ 557 (796)
+..+....+..+...|..+....+..-...+|...-...+.++.+.|+. +++...+..+... .|+...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3344444444444444333222222222334444444555556665543 3456666655333 455554444555
Q ss_pred HHhccCchHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcC-ChHH
Q 036290 558 SCAAIGAYQR--TKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHG-LVSE 634 (796)
Q Consensus 558 ~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 634 (796)
++...+.... -.+....+...-..++..+-...+.++++.++. ++...+...+..++...-...+.++.+.+ +...
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 4444332110 112222222222223445555666666666653 44444446666666665555556655543 2345
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036290 635 AMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM- 713 (796)
Q Consensus 635 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 713 (796)
+...+..+.. .++...-...+.++.+.|+. .|...+-...+. ++ .....+.++...|.. +|...+..+
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 5555555552 45666666667777777663 444444444422 12 233456666666664 455555555
Q ss_pred CCCCCHHHHHHHHHHH
Q 036290 714 PFQPSPTVYRSLLSGC 729 (796)
Q Consensus 714 ~~~p~~~~~~~l~~~~ 729 (796)
.-.||..+-...+.+|
T Consensus 262 ~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 262 YKFDDNEIITKAIDKL 277 (280)
T ss_pred hhCCChhHHHHHHHHH
Confidence 3345555544444443
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=36 Score=37.90 Aligned_cols=76 Identities=12% Similarity=0.042 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcc
Q 036290 382 ENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCR 460 (796)
Q Consensus 382 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 460 (796)
..+....|+.+.-.|++++|-...-.|...+..-|.-.+..+...++......++ .....+.+...|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 3455677788888888888888888888777777777777777666654433322 111112344555555555544
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.89 E-value=0.066 Score=47.08 Aligned_cols=85 Identities=15% Similarity=0.053 Sum_probs=58.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchH
Q 036290 150 SVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFE 229 (796)
Q Consensus 150 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 229 (796)
.++..+-+.+.......+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666777777777788887777677788888999999998888888888773332 333456666667777777
Q ss_pred HHHHHHHH
Q 036290 230 ALNVVSSM 237 (796)
Q Consensus 230 A~~~~~~m 237 (796)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77666655
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.83 E-value=8.6 Score=37.79 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=100.7
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHH
Q 036290 526 HQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKL---GFNTEVYVASAVIDAYAKCGDIKG 602 (796)
Q Consensus 526 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 602 (796)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++.+... +++....+-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 478888898899998775 4777778888888899999988888887777653 233233333444555677899999
Q ss_pred HHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C---CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290 603 ARMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-P---SQATFVSVMSACSHKGLVDKGCLLFKS 676 (796)
Q Consensus 603 A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p---~~~t~~~ll~~~~~~g~~~~A~~~~~~ 676 (796)
|++.-++.+.-+ |.-.-.+....+.-.|++.++.+...+-.+. .+ . -...|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 998887777664 4444455666677788888888776554331 11 0 111233333344556788899998875
Q ss_pred hH
Q 036290 677 MD 678 (796)
Q Consensus 677 ~~ 678 (796)
-.
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 44
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.75 E-value=14 Score=32.91 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036290 368 QLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDN 407 (796)
Q Consensus 368 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 407 (796)
++++.+.+.+++|+...+..+++.+.+.|++.....++.-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 4555566677888888888888888888877766665543
No 282
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.55 E-value=30 Score=38.91 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=28.6
Q ss_pred CcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036290 346 NHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRC 395 (796)
Q Consensus 346 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 395 (796)
+....-.+|--|.++|+.++|.++..... ..+......+...+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~-~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENR-NQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTG-GGS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhh-hhhcchhHHHHHHHHHHHhC
Confidence 44455567777888888888888773333 22344444555666666554
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.09 E-value=0.67 Score=28.00 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290 722 YRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
+..+..++.+.|+.++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4557777888999999999999999998874
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.80 E-value=20 Score=32.05 Aligned_cols=57 Identities=9% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHc
Q 036290 285 NALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILS 341 (796)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~ 341 (796)
..++..+...|++-+|.++.+....-+......++.+..+.++...-..+|+-..+.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455566677777778887777765555555566777777777766655555555443
No 285
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.62 E-value=7.1 Score=30.78 Aligned_cols=89 Identities=10% Similarity=0.057 Sum_probs=61.1
Q ss_pred CChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 036290 58 KSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMK 137 (796)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 137 (796)
...++|..|-+-+...+-. ...+--+-++++...|++++|..+.+.+.-||+..|-++-.. +.|..+.+..-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 3455666555554433311 233333445677899999999999999999999999887664 7788888888888888
Q ss_pred HCCCCCCcccHHH
Q 036290 138 TNGFMPNEFAVGS 150 (796)
Q Consensus 138 ~~~~~p~~~t~~~ 150 (796)
.+| .|...+|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 776 444444443
No 286
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.58 E-value=0.74 Score=41.30 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=39.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHH
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQPSQAT------FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDML 697 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 697 (796)
-+.+.|++++|..-|.+.++. -|...+ |..-.-++.+.+.++.|+.-..... .+.|+ ...+..-..+|
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEAY 178 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHHH
Confidence 355566666666666666653 232211 2222234445555555555554444 34443 22222233344
Q ss_pred HhcCChHHHHHHHHhC
Q 036290 698 SRNGYLEDAKHVIEIM 713 (796)
Q Consensus 698 ~~~g~~~~A~~~~~~~ 713 (796)
.+..++++|++-+.+.
T Consensus 179 ek~ek~eealeDyKki 194 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKI 194 (271)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 4455555555555444
No 287
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.40 E-value=26 Score=33.06 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCChHHHHHHH
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP--SPDCYGCLVDMLSRNGYLEDAKHVI 710 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 710 (796)
|...|-.+....++..|...++.-.+-.++.- +..+...|+.+|- .|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 44444455555566666666655332212111 1444555555543 45555555544
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.19 E-value=11 Score=32.52 Aligned_cols=26 Identities=8% Similarity=-0.086 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 721 VYRSLLSGCRIHGNKELGEWASEKLL 746 (796)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 746 (796)
.|..........|+..++..+.+.+.
T Consensus 95 ~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 45555555556666666776666665
No 289
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.96 E-value=17 Score=30.54 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM 683 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 683 (796)
.....+..+...|+-+.-.+++.++.+. -+|+......+..||.+.|+..++.+++.++.++ |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445566677777777777777777652 3566667777778888888888888888777755 54
No 290
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=32 Score=33.61 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=74.0
Q ss_pred HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGC 671 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 671 (796)
....|++.+|...|+..+.. .+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 44567777777777554443 2445556677777777777777777777654221122222122233333333333333
Q ss_pred HHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCCHHHHHHHHHHHHhcC
Q 036290 672 LLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-P---FQPSPTVYRSLLSGCRIHG 733 (796)
Q Consensus 672 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~~~~~~~l~~~~~~~g 733 (796)
.+-++.- -.| |...-..+...+...|+.++|.+.+-.+ . -.-|...-..|+..+...|
T Consensus 224 ~l~~~~a----adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLA----ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333332 345 3556666777777777777777666544 1 1223445556666665555
No 291
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.73 E-value=2 Score=39.26 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY 702 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 702 (796)
.|-..|-+.-|.--|.+... +.|+. ..||.|---+...|+++.|.+.|+... .+.|. ..+...-.-.+.=-|+
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~---ELDp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh---ccCCcchHHHhccceeeeecCc
Confidence 35566666666666666666 66744 456666666677788888888887776 55565 2222211222333577
Q ss_pred hHHHHHHHHhC
Q 036290 703 LEDAKHVIEIM 713 (796)
Q Consensus 703 ~~~A~~~~~~~ 713 (796)
++-|.+-+...
T Consensus 149 ~~LAq~d~~~f 159 (297)
T COG4785 149 YKLAQDDLLAF 159 (297)
T ss_pred hHhhHHHHHHH
Confidence 77777666554
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.28 E-value=7.3 Score=35.47 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc------h
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP------D 688 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~------~ 688 (796)
..+..+...|++.|+.+.|.+.|.++.+....|.. ..+..+|+.+...|++..+.....++........|. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35667888889999999999999998886655533 346777888888889988888888776442221111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 689 CYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+|..| .+...|++.+|.+.|-..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 22222 234578999998888776
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.20 E-value=1.3 Score=27.67 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 689 CYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+|..|..+|.+.|++++|++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888899999999999888873
No 294
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.18 E-value=1.4 Score=25.92 Aligned_cols=31 Identities=23% Similarity=0.052 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 721 VYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
.|..+...+...|+++.|...++.+++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5677788888889999999999999988875
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.98 E-value=0.59 Score=28.73 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHhcCChHHH
Q 036290 687 PDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A 706 (796)
+..|..+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44455555555555555544
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.78 E-value=11 Score=33.25 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=48.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 036290 626 YAHHGLVSEAMEIFDKMKLANLQPSQA-TFVSV--MSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGY 702 (796)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l--l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 702 (796)
....|+...|...|+++-.-.-.|-.. -...| ...+...|.++....-.+-+... +-.-....-..|.-+-.+.|+
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccc
Confidence 455667777777777766533333221 11111 12345667777766666655422 222224444566666677777
Q ss_pred hHHHHHHHHhC
Q 036290 703 LEDAKHVIEIM 713 (796)
Q Consensus 703 ~~~A~~~~~~~ 713 (796)
+.+|.++|...
T Consensus 183 ~a~A~~~F~qi 193 (221)
T COG4649 183 FAKAKSWFVQI 193 (221)
T ss_pred hHHHHHHHHHH
Confidence 77777777766
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.44 E-value=35 Score=32.65 Aligned_cols=176 Identities=14% Similarity=0.149 Sum_probs=93.5
Q ss_pred HHHHcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036290 523 ALVHQGHNHEAVTIFHSLVEAG--EKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI 600 (796)
Q Consensus 523 ~~~~~~~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 600 (796)
.-.+.|++++|.+.|+.+..+- -+-...+...++.++-+.++++.|....++..+.-......-|...+.+++.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~---- 118 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY---- 118 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH----
Confidence 3456788888888888886542 1223455556667777888888888888887775444444445445555441
Q ss_pred HHHHHHHhccCCC--CChh-------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHH
Q 036290 601 KGARMAFDQSFNS--NDVI-------VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATF-VSVMSACSHKGLVDKG 670 (796)
Q Consensus 601 ~~A~~~~~~~~~~--~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~A 670 (796)
| ..+.. .|.. .+..++.-|=...-...|..-...+... ..-+ ..+.+-|.+.|.+..|
T Consensus 119 ------~-~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 119 ------F-FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA-----LAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ------h-ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcChHHH
Confidence 1 11111 1111 1111111111111111111111111110 0001 1234567778888888
Q ss_pred HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 671 CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP 714 (796)
Q Consensus 671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (796)
..-++.|.+.+.-.+- ...+-.+..+|.+.|-.++|...-.-++
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 8888888855433332 4556667778888888877776666553
No 298
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.16 E-value=42 Score=33.32 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=29.6
Q ss_pred chhHhHHHHHHHhcCCcchHHHHHhcCCCC---CHhhHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCH
Q 036290 483 GYICSSLIKSYVNFGQLDNSFEFSNGAERL---DMASWGAMMSALV--HQGHNHEAVTIFHSLVEAGEKPDE 549 (796)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~ 549 (796)
+.++-.-++.+.+.++.+.+.+.+.+|... ....+...+..+- .......|...++.+....+.|..
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 344444444444455555555555554431 1223333333331 123334555666555444444444
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.10 E-value=2.1 Score=26.09 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
.|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666665
No 300
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.02 E-value=74 Score=35.99 Aligned_cols=125 Identities=12% Similarity=-0.033 Sum_probs=77.2
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHH
Q 036290 629 HGLVSEAMEIFDKMKLAN-LQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLED 705 (796)
Q Consensus 629 ~g~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 705 (796)
..+.+.|..++....... +.+.. ..+..+.......+..++|...++.... ...+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 456788999998875432 33222 2234444333444335566666665541 22344455555666668999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 706 AKHVIEIMP--FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 706 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
+...+..|+ ..-...-..-+..++...|+.++|...++++-. + ...|-.|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 999999983 222334445667777778999999999999743 2 34555663
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.31 E-value=16 Score=36.48 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHcCCCCCcc--hHHHHHHHhcccCC--hHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290 329 GQTASLFHKFILSGSRPNHV--TFSILLRQCGKLLD--LDLGLQLQCLALHCGFLDEENVTSSL 388 (796)
Q Consensus 329 ~~a~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l 388 (796)
+.+..+|+.+...|+..+.. ..+.+|..+..... ...+.++++.+.+.|+++....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455666666666555433 33333333322222 23556666667777776666665544
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.29 E-value=4.7 Score=39.13 Aligned_cols=102 Identities=10% Similarity=0.045 Sum_probs=74.0
Q ss_pred hCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC-CCc-----chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc
Q 036290 73 LGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE-RNL-----VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEF 146 (796)
Q Consensus 73 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 146 (796)
.|...+..+-..++..-.....++.+...+=++.+ |+. .+-.+.++-+ -.=+++.++.++..=++.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 46666666777777776777888888887766643 211 1111223332 2336778999999889999999999
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 036290 147 AVGSVMKVCVSMGASEFGYSIHCFALKIR 175 (796)
Q Consensus 147 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 175 (796)
|++.++..+.+.++...|.++.-+|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999888888877654
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.72 E-value=1.1 Score=27.51 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 036290 639 FDKMKLANLQP-SQATFVSVMSACSHKGLVDKGC 671 (796)
Q Consensus 639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~ 671 (796)
|++.++ +.| |...|..+...+...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344455 456 6667777777778888877775
No 304
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=83.63 E-value=59 Score=33.76 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=57.9
Q ss_pred CCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcc---hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 036290 75 FTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLV---SWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPN 144 (796)
Q Consensus 75 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 144 (796)
-+-|+.+|-.||.-|...|..++.++.+++|..|-.. +|..-+++-....+++....+|.+........|
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld 110 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD 110 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh
Confidence 3567889999999999999999999999999887543 688888887778888888899988877655433
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.33 E-value=66 Score=34.07 Aligned_cols=165 Identities=7% Similarity=0.010 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036290 584 VYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS 662 (796)
Q Consensus 584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 662 (796)
.....+++..++..-+..-...+..+++.- .+-..|-.++..|... ..+.-..+|+++.+ ..-|......-+-.+.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~y 142 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKY 142 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHH
Confidence 333444445554444444444444333322 3445566666666666 44566667777766 3333333333333333
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC------chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 036290 663 HKGLVDKGCLLFKSMDSQYGMQPS------PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPSPTVYRSLLSGCRIH 732 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~ 732 (796)
..++.+.+..+|.++..+ +-|. ...|.-|.... ..+.+....+..+. +...-...+..+-.-|...
T Consensus 143 Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 143 EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 346666777777666533 2331 12233222211 23444444444444 2223334455555666777
Q ss_pred CChHHHHHHHHHHHccCCCCCcc
Q 036290 733 GNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 733 g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
.|+.+|++++..+++.+..|.-+
T Consensus 219 eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred cCHHHHHHHHHHHhhhcchhhhH
Confidence 78888888888888877777665
No 306
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.74 E-value=15 Score=33.93 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHH
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCL 693 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l 693 (796)
.+.-+..+.+.+...+++...++-.+ -+| |..+-..+++.++-.|+|++|..-++..- .+.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34445666777788888887776666 356 55666677788888888888888777665 34444 4556555
Q ss_pred HHHHHhcCChHHHHHHHHhC---CCCC-CHHHHHH-HHHH--HHhcCChHHHHHHHHHHHccCCCCC
Q 036290 694 VDMLSRNGYLEDAKHVIEIM---PFQP-SPTVYRS-LLSG--CRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~-l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
+++-.-.. ++|..- ++-- ....|-. +..+ +...|.-+.+..+-+.+++..|..+
T Consensus 79 ir~ea~R~------evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRCEAARN------EVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHHHHHH------HHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 55432111 233222 1111 2233433 3333 2233455556677777777666533
No 307
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.57 E-value=11 Score=38.87 Aligned_cols=130 Identities=17% Similarity=0.204 Sum_probs=89.6
Q ss_pred hcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHH
Q 036290 628 HHGLVSEAM-EIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 628 ~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 706 (796)
..|+.-.|- +++..++...-.|+.....+.| +...|+++.+.+.+...... +.....+..++++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 456655554 4555555544456655544444 56789999999999888632 334467888899999999999999
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE-EecC
Q 036290 707 KHVIEIM-P-FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV-LLSK 761 (796)
Q Consensus 707 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~ 761 (796)
..+-+.| + .-.++.+...........|-++++...+++.+.++|.....++ .|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 9999888 2 2234444444444556678899999999999999887555444 5554
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.53 E-value=18 Score=32.99 Aligned_cols=62 Identities=8% Similarity=0.113 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHH
Q 036290 516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE--YILGTILNSCAAIGAYQRTKSIHPFVIK 577 (796)
Q Consensus 516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 577 (796)
.+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+|..+...+++..+.........
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666677777777777777777665444433 2345556666666676666666555544
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.47 E-value=8.5 Score=37.58 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHH
Q 036290 652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSPTVY 722 (796)
Q Consensus 652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~ 722 (796)
.++..++.++...|+++.+...++++. ...| +...|..++.+|.+.|+...|+..++.+ ++.|...++
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li---~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLI---ELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH---hcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 456778888888999999999999998 4455 4788999999999999999999999877 466666554
Q ss_pred HHHHH
Q 036290 723 RSLLS 727 (796)
Q Consensus 723 ~~l~~ 727 (796)
.....
T Consensus 231 ~~y~~ 235 (280)
T COG3629 231 ALYEE 235 (280)
T ss_pred HHHHH
Confidence 44333
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.29 E-value=32 Score=30.33 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=20.3
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 663 HKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..++.+++..++..+. -++|. +..-..-...+.+.|+|.+|..+++++
T Consensus 22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444444444444 33444 222222233344444555555444444
No 311
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.26 E-value=41 Score=35.55 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=41.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N---DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
+-..+-..+..+.-+.|+.++|.+.++++++. | +......|+.++...+.+.++..++.+-.+
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444445666666777777777777666653 2 233555677777777777777777777654
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.48 E-value=3.5 Score=24.92 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
.|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.11 E-value=44 Score=30.52 Aligned_cols=88 Identities=10% Similarity=0.047 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCChhHHHH-----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNSNDVIVYNT-----LIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG 665 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 665 (796)
...+..++++++|..-++..+..+.-..+.. |.+.....|.+++|+.+++...+.+..+ .....--+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcC
Confidence 4455666777777777655555442222222 3344556666777777666655433221 11222234556666
Q ss_pred CHHHHHHHHHHhHhh
Q 036290 666 LVDKGCLLFKSMDSQ 680 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~ 680 (796)
+-++|..-|+.....
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 666666666666633
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.78 E-value=14 Score=36.07 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=62.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290 579 GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDV-----IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT 653 (796)
Q Consensus 579 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 653 (796)
|......+...++..-....+++++...+-..-.+++. .+-.+.++.+.+ =+.++++.++..=..-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 33444444445555555556677776666333333211 111222333332 256678888877788888888888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
+..+|+.+.+.+++.+|..+...|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877776654
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.16 E-value=8.2 Score=35.54 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-C----CCCCHHHHHHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-P----FQPSPTVYRSLL 726 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~~~~~~~l~ 726 (796)
|.+.-+..+.+.+++++|+...++-++ -+|. ..+-..+++.|+-.|+|++|..-++-. . ..+...+|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 345556777888999999999988773 3565 666778999999999999999877765 2 334557888888
Q ss_pred HHH
Q 036290 727 SGC 729 (796)
Q Consensus 727 ~~~ 729 (796)
.+-
T Consensus 80 r~e 82 (273)
T COG4455 80 RCE 82 (273)
T ss_pred HHH
Confidence 774
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.88 E-value=9.6 Score=29.96 Aligned_cols=48 Identities=6% Similarity=0.008 Sum_probs=39.3
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHH
Q 036290 125 EFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFAL 172 (796)
Q Consensus 125 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 172 (796)
+..++.+-++.+-...+.|++....+.|++|.+.+|+..|..+++-+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344667777788888888999999999999999999988888888766
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.24 E-value=1.2e+02 Score=34.23 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=58.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCC
Q 036290 217 MIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSG 296 (796)
Q Consensus 217 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 296 (796)
-|..+.+.+.+++|++..+.-.. ..|... -..+...+|+.+.-.|+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~--------------------------------i~kv~~~yI~HLl~~~~ 407 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFV--------------------------------IKKVGKTYIDHLLFEGK 407 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--Cccccc--------------------------------hHHHHHHHHHHHHhcch
Confidence 35667788888888887665532 222110 11233556666666777
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcc
Q 036290 297 MDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGK 359 (796)
Q Consensus 297 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 359 (796)
+++|-...-.|...+...|.--+..+...++......++ .......+...|..+|..+..
T Consensus 408 y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 408 YDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 777777777777666666666666666665554333222 111112234455555555544
No 318
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.21 E-value=64 Score=34.31 Aligned_cols=20 Identities=30% Similarity=0.205 Sum_probs=11.8
Q ss_pred HHHHHccCChhHHHHHhhcc
Q 036290 187 LNFYAKLGDVAAAERVFYSI 206 (796)
Q Consensus 187 i~~~~~~g~~~~A~~~~~~~ 206 (796)
+...++.|+.+.+..+++.-
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcC
Confidence 44455667776666666543
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.16 E-value=3.7 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 720 TVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888888875
No 320
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.86 E-value=11 Score=29.65 Aligned_cols=62 Identities=10% Similarity=0.164 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290 632 VSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD 695 (796)
Q Consensus 632 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 695 (796)
.-++.+-++.+....+.|+.....+.++||.+.+++..|..+|+.++.+ +..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 3355566677777778888888999999999999999999999887744 2224445655543
No 321
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.52 E-value=13 Score=33.81 Aligned_cols=83 Identities=18% Similarity=0.180 Sum_probs=43.9
Q ss_pred HHhcCCHHHHHHHHhccCCC-C------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 036290 594 YAKCGDIKGARMAFDQSFNS-N------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-QATFVSVMSACSHKG 665 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g 665 (796)
+.+.|++++|..-|...+.. | ....|..-..++.+.+.++.|+.-..+.++ +.|+ ......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhhh
Confidence 45566666666666444433 1 223344444556666666666666666665 3342 122222234555566
Q ss_pred CHHHHHHHHHHhH
Q 036290 666 LVDKGCLLFKSMD 678 (796)
Q Consensus 666 ~~~~A~~~~~~~~ 678 (796)
++++|++-|..+.
T Consensus 183 k~eealeDyKki~ 195 (271)
T KOG4234|consen 183 KYEEALEDYKKIL 195 (271)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666666665
No 322
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.39 E-value=21 Score=33.53 Aligned_cols=118 Identities=10% Similarity=-0.014 Sum_probs=65.8
Q ss_pred HHhcCCHHHHHHHHhccCCC-CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCCHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNS-NDV-IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM-SACSHKGLVDKG 670 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~A 670 (796)
|....+++.|..-+.+.+.. |+. .-|..-+..+.+.++++.+..--.+.++ +.||.+--...+ .+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 34445666666666555543 544 3344556666777777777776666666 667665433333 344556667777
Q ss_pred HHHHHHhHhh---cCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 671 CLLFKSMDSQ---YGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 671 ~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+..+++..+. ..+.|...+...|..+--+.=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7777776422 233333455555555444444444455555544
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.29 E-value=1.8 Score=37.85 Aligned_cols=84 Identities=8% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHH
Q 036290 252 ALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQT 331 (796)
Q Consensus 252 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (796)
++..+...+.......+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555556666677777777777666566677778888888888777777777763322 3344566666666666666
Q ss_pred HHHHHHH
Q 036290 332 ASLFHKF 338 (796)
Q Consensus 332 ~~l~~~m 338 (796)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666554
No 324
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.87 E-value=2.2e+02 Score=36.78 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc-CCCCCcc
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLL-LPKNDAA 755 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~ 755 (796)
..+|....+...++|+++.|...+-.++...-+..+-..+.-....||...|..++++.++. .|+..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Confidence 67888888888889999999977766632223445666777789999999999999999964 4654443
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.72 E-value=68 Score=30.75 Aligned_cols=221 Identities=14% Similarity=0.156 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-----hCCCCchhHH
Q 036290 518 GAMMSALVHQGHNHEAVTIFHSLVE---AGE--KPDEYILGTILNSCAAIGAYQRTKSIHPFVIK-----LGFNTEVYVA 587 (796)
Q Consensus 518 ~~li~~~~~~~~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 587 (796)
-.+|....+.+++++.+..+.+|.. ..+ .-+..+.+.++...+...+.+...++++.-.+ .+-..=..+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3455666666666666666666532 111 23445666666666666666655555543222 1111111222
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC--------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH
Q 036290 588 SAVIDAYAKCGDIKGARMAFDQSFNS--------------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN-LQPSQA 652 (796)
Q Consensus 588 ~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 652 (796)
+.|...|...+.+....+++++.-.+ .-...|..=|..|...++-.....++++...-. --|...
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 34555555555555555555322111 122455566677777777666667777665421 124433
Q ss_pred HHHHHHHHH-----hccCCHHHHHHHHHHhHhhcCC--CCC-c--hHHHHHHHHHHhcCChHHHHHHHHhC-CCC--CCH
Q 036290 653 TFVSVMSAC-----SHKGLVDKGCLLFKSMDSQYGM--QPS-P--DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ--PSP 719 (796)
Q Consensus 653 t~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~~~--~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~ 719 (796)
.. .+|+-| .+.|++++|-.-|-++.+.+.- .|. . .-|..|..++.+.|--.-- -+++ +.+ |..
T Consensus 229 Im-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFD---sQEAKPyKNdPEI 304 (440)
T KOG1464|consen 229 IM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFD---SQEAKPYKNDPEI 304 (440)
T ss_pred HH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCc---ccccCCCCCCHHH
Confidence 33 344444 3567777776544444333221 222 2 2255566667766621100 0111 333 444
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 036290 720 TVYRSLLSGCRIHGNKELGEWASE 743 (796)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~ 743 (796)
.....|+.+|.. ++..+-++++.
T Consensus 305 lAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 305 LAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHhc-ccHHHHHHHHH
Confidence 556777777754 34444444443
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.35 E-value=17 Score=29.01 Aligned_cols=60 Identities=10% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290 634 EAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD 695 (796)
Q Consensus 634 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 695 (796)
+..+-++.+....+.|+.....+.+++|.+.+++..|..+|+.++.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 45566667777778899999999999999999999999999888755 3333446766654
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.72 E-value=18 Score=28.88 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290 431 DVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK 491 (796)
Q Consensus 431 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (796)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.+...- ......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566667777788999999999999999999999999998886653 222225555544
No 328
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.66 E-value=8.2 Score=37.98 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=57.3
Q ss_pred HHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 036290 592 DAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDK 669 (796)
Q Consensus 592 ~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 669 (796)
.-|.+.|.+++|+..|...+.. | +.+++..-..+|.+.+++..|+.-.......+ +.-...|..-+.+=...|+..+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 4588889999999888666654 5 77888888888888888887777666665421 0011223333333334455555
Q ss_pred HHHHHHHhHhhcCCCCC
Q 036290 670 GCLLFKSMDSQYGMQPS 686 (796)
Q Consensus 670 A~~~~~~~~~~~~~~p~ 686 (796)
|.+-++.+. .+.|+
T Consensus 184 AKkD~E~vL---~LEP~ 197 (536)
T KOG4648|consen 184 AKKDCETVL---ALEPK 197 (536)
T ss_pred HHHhHHHHH---hhCcc
Confidence 555555555 55666
No 329
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.64 E-value=25 Score=30.42 Aligned_cols=87 Identities=9% Similarity=0.087 Sum_probs=55.3
Q ss_pred hCCCCCc--hhhHHHHHHHHccCChhHHHHHhcccCC---------CCcchHHHHHHHHHhcCCc-hHHHHHHHHHHHCC
Q 036290 73 LGFTNDI--FLQNNLIAMYSKCGYFGWGLRVFDEMAE---------RNLVSWTLIVSAAIQNGEF-DMGLKMYVDMKTNG 140 (796)
Q Consensus 73 ~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~ 140 (796)
.+..++. ...|+++.-....++....+.+++.+.. .+-.+|+.++.+.++.... --+..+|.-|.+.+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 3444443 3447777777777777777777666532 3445677777777555442 33567777777777
Q ss_pred CCCCcccHHHHHHHHhccC
Q 036290 141 FMPNEFAVGSVMKVCVSMG 159 (796)
Q Consensus 141 ~~p~~~t~~~ll~~~~~~~ 159 (796)
.+++..-|..++++|.+..
T Consensus 111 ~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred CCCCHHHHHHHHHHHHcCC
Confidence 7777777777777776543
No 330
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.20 E-value=82 Score=30.92 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=31.8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CChhHHHHHHHHHHhcCChHHHHHHHH
Q 036290 580 FNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----NDVIVYNTLIMAYAHHGLVSEAMEIFD 640 (796)
Q Consensus 580 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~ 640 (796)
-.++..+...+++.++..+++..-.++++...+. .|...|..+|+.....|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555555555555555555555443332 255556666666666666544444433
No 331
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.04 E-value=1e+02 Score=31.83 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNSN------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
...++..++..+.+.|.++.|...+....... .+...-.-++.+-..|+.++|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566677777788888888877775554432 344455556667777888888888777766
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.33 E-value=5.3 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=9.9
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 036290 692 CLVDMLSRNGYLEDAKHVIE 711 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~ 711 (796)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 333
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.05 E-value=1.1e+02 Score=31.76 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=25.3
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHH-hcCChHHHHHHHHhC
Q 036290 659 SACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLS-RNGYLEDAKHVIEIM 713 (796)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 713 (796)
..+.+.|-+..|.++.+-+. .+.|+ +.....+|+.|+ ++++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 34455566666666655555 33343 333333444443 445555555555443
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.28 E-value=5.2 Score=24.18 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766665
No 335
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.12 E-value=2e+02 Score=34.39 Aligned_cols=92 Identities=4% Similarity=-0.125 Sum_probs=38.3
Q ss_pred CChHHHHHHHHhhhcCCCHHHHH-HHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 036290 279 CSISIVNALIDMYIKSSGMDYAF-KVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQC 357 (796)
Q Consensus 279 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~ 357 (796)
+|..+..+.+..+.+.|....+. .+...+.+++...=...+.++...+. +++...+..+.+ .|+...=...+.++
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL 862 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLAL 862 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 34445555555555555443332 22233333443333334444444443 234444444432 23333334444455
Q ss_pred cccCChHHHHHHHHHHH
Q 036290 358 GKLLDLDLGLQLQCLAL 374 (796)
Q Consensus 358 ~~~~~~~~a~~~~~~~~ 374 (796)
.+......+...+....
T Consensus 863 ~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 863 TRWPGDPAARDALTTAL 879 (897)
T ss_pred hccCCCHHHHHHHHHHH
Confidence 44322333444444333
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.99 E-value=86 Score=30.10 Aligned_cols=207 Identities=14% Similarity=0.197 Sum_probs=127.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCchHHHHHHHHHHHH---hCC--CCchhHHHHHHHHHHhcC
Q 036290 527 QGHNHEAVTIFHSLVEAGEKPDEY---ILGTILNSCAAIGAYQRTKSIHPFVIK---LGF--NTEVYVASAVIDAYAKCG 598 (796)
Q Consensus 527 ~~~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~~~~~g 598 (796)
...+++|+.-|++..+..-.-... ....++....+.+++++..+.+.++.. ..+ ..+....|++++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 457888888888876643232333 344567778889999998888887764 222 234567778887777776
Q ss_pred CHHHHHHHHhccCC---C-CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----C-------HHHHHHHHH
Q 036290 599 DIKGARMAFDQSFN---S-ND----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP----S-------QATFVSVMS 659 (796)
Q Consensus 599 ~~~~A~~~~~~~~~---~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~-------~~t~~~ll~ 659 (796)
+.+--.++++..+. . .+ -.+-..|...|...+.+.+..++++++......- | ...|..=|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 66665555532221 1 12 2234467777888888889999998887542211 1 134666677
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH----HHHHhcCChHHHH-HHHHhCC-----CCCCHHH---HHHHH
Q 036290 660 ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLV----DMLSRNGYLEDAK-HVIEIMP-----FQPSPTV---YRSLL 726 (796)
Q Consensus 660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~-~~~~~~~-----~~p~~~~---~~~l~ 726 (796)
.|..+.+-..-..++++...-....|.+.+...+- .++.+.|++++|- .+|+..+ -.|...+ |-.|.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 77777777777778887764445567766655442 3466789999887 4444441 2344333 44444
Q ss_pred HHHHhcC
Q 036290 727 SGCRIHG 733 (796)
Q Consensus 727 ~~~~~~g 733 (796)
..+.+.|
T Consensus 280 NMLmkS~ 286 (440)
T KOG1464|consen 280 NMLMKSG 286 (440)
T ss_pred HHHHHcC
Confidence 4455543
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.14 E-value=36 Score=27.07 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=56.3
Q ss_pred ChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHH
Q 036290 160 ASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLF 239 (796)
Q Consensus 160 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 239 (796)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|....+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456666666666554422 22232233456778899999999999998899988877765 356666666666777766
Q ss_pred CCCCCCHhhH
Q 036290 240 EGITMDKYTF 249 (796)
Q Consensus 240 ~g~~p~~~~~ 249 (796)
+|- |....|
T Consensus 97 sg~-p~lq~F 105 (115)
T TIGR02508 97 SGD-PRLQTF 105 (115)
T ss_pred CCC-HHHHHH
Confidence 653 444444
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.09 E-value=8.9 Score=34.31 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC----ChHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcC
Q 036290 667 VDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG----YLEDAKHVIEIM--------PFQPSPTVYRSLLSGCRIHG 733 (796)
Q Consensus 667 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g----~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g 733 (796)
+++|+.-|+++. .+.|+ ..++..+..+|...+ +..+|.++|++. ..+|+..+|+.-+....+
T Consensus 51 iedAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k-- 125 (186)
T PF06552_consen 51 IEDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK-- 125 (186)
T ss_dssp HHHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh--
Confidence 344444444444 57888 677778888776544 344444554444 467888888877776643
Q ss_pred ChHHHHHHHHH
Q 036290 734 NKELGEWASEK 744 (796)
Q Consensus 734 ~~~~A~~~~~~ 744 (796)
-++.-.++-+.
T Consensus 126 ap~lh~e~~~~ 136 (186)
T PF06552_consen 126 APELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHS
T ss_pred hHHHHHHHHHH
Confidence 34444444443
No 339
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.91 E-value=74 Score=33.83 Aligned_cols=168 Identities=11% Similarity=0.063 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCCCchh--hHHHHHHHHccCChhHHHHHhcccCCCCcc--hHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 036290 65 QVHGHIVKLGFTNDIFL--QNNLIAMYSKCGYFGWGLRVFDEMAERNLV--SWTLIVSAAIQNGEFDMGLKMYVDMKTNG 140 (796)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 140 (796)
++...+.+.|..|+... ....+...++.|+.+-+.-+++.-..++.. .....+...++.|+.+.+..+++ .|
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cC
Confidence 34555556677666532 344555666778877666666543333221 11223445566777766555554 33
Q ss_pred CCC----CcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhH--hhHHHHHHHccCChhHHHHHhhccCCC---Cc
Q 036290 141 FMP----NEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFV--GCSVLNFYAKLGDVAAAERVFYSISSD---DV 211 (796)
Q Consensus 141 ~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~ 211 (796)
... +....+ .+...+..|+. ++.+.+.+.|..++... ....+...+..|+.+-+..+++.-... |.
T Consensus 92 ~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~ 166 (413)
T PHA02875 92 KFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC 166 (413)
T ss_pred CcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Confidence 211 111122 23333344554 34445556666554321 233445556677777776666644332 22
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 036290 212 GCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDK 246 (796)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 246 (796)
.-++.+.. .+..|+. ++++.+.+.|..|+.
T Consensus 167 ~g~TpL~~-A~~~g~~----eiv~~Ll~~ga~~n~ 196 (413)
T PHA02875 167 CGCTPLII-AMAKGDI----AICKMLLDSGANIDY 196 (413)
T ss_pred CCCCHHHH-HHHcCCH----HHHHHHHhCCCCCCc
Confidence 22333333 3334443 344445556655543
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=72.02 E-value=15 Score=31.05 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=50.9
Q ss_pred CCCchHHHHHHHHHHhcCC---hHHHHHHHHhC-C-CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 684 QPSPDCYGCLVDMLSRNGY---LEDAKHVIEIM-P-FQPSP--TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 684 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
.++..+-..+..++.+..+ ..+.+.++++. + -.|+. .-...|.-++.+.++++.+++..+..++.+|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4555566667777777654 34455566655 2 22322 2233455567777888888888888888888777764
Q ss_pred EEecC-hhhHHhCCC
Q 036290 757 VLLSK-RKRQREGNL 770 (796)
Q Consensus 757 ~~l~~-~~~~~~~~~ 770 (796)
.+=.. -+.|+..|+
T Consensus 109 ~Lk~~ied~itkegl 123 (149)
T KOG3364|consen 109 ELKETIEDKITKEGL 123 (149)
T ss_pred HHHHHHHHHHhhcce
Confidence 43321 334444443
No 341
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=71.93 E-value=1.6e+02 Score=32.17 Aligned_cols=178 Identities=7% Similarity=-0.114 Sum_probs=100.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCc--ccHHHHHHHH
Q 036290 381 EENVTSSLIYMFCRCGAVEMAHSVFDNVSYK---NITTWNELLSGYCFNCCDADVLKTFCNIWESGVE--VNGCTFFYVV 455 (796)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~ll 455 (796)
+..+|..-++.-.+.|+.+.+.-+|+...-| =...|--.+.-....|+.+-+-.++..-.+--++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4557777788888888888888888877643 1223444444444447777777766655543332 2222222222
Q ss_pred HHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHH---HHHhcCCC--CCHhhHHHHHHHH-----H
Q 036290 456 ETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSF---EFSNGAER--LDMASWGAMMSAL-----V 525 (796)
Q Consensus 456 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~~~-----~ 525 (796)
+-..|+.+.|..+++.+.+.- +.-..+-..-+....+.|..+.+. +++....+ .+....+.+..-+ .
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 334568888888888887665 322333333455566677777666 33333322 2222222222222 2
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290 526 HQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI 562 (796)
Q Consensus 526 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 562 (796)
-.++.+.|..++.++.+. .+++...|..++.-+...
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 246677777777777654 455666666666554443
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.66 E-value=10 Score=24.09 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMK 643 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~ 643 (796)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444555555555555555555443
No 343
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.36 E-value=7.9 Score=35.93 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 696 MLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
...+.|+.+.|.+++.+. ...|+ ..+|-.+.....+.|+++.|.+.+++.++++|++...
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 456788889999998887 55664 4688888888899999999999999999999986653
No 344
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.94 E-value=33 Score=37.88 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=53.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 036290 626 YAHHGLVSEAMEIFDKMKLANLQPSQAT---FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGY 702 (796)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 702 (796)
|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-.+ .++...++-. +-..|-..+.+.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~Elq~-------------IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLELQQ-------------IGMKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHHHH-------------HHHHHHHHhhccch
Confidence 3344455667777777666 6665443 3333332211 1222222211 01123445566777
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290 703 LEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 703 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
.+.-.++++-. ....+-.-.+|+.+|.+..+.+++++|...
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 66666655432 223334455788888888888888887543
No 345
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.48 E-value=2e+02 Score=32.48 Aligned_cols=48 Identities=23% Similarity=0.180 Sum_probs=30.7
Q ss_pred ceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCC
Q 036290 211 VGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVA 260 (796)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 260 (796)
...| ++|-.|.|.|.+++|.++.+.... ........|...+..+....
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 3344 566777888888888888855533 34555566777788776653
No 346
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.37 E-value=66 Score=27.95 Aligned_cols=76 Identities=7% Similarity=0.204 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC---------CChhhHHHHHHHHHhcCC-chHHHHHHHHHHhcCCcccHHHHHHHH
Q 036290 386 SSLIYMFCRCGAVEMAHSVFDNVSY---------KNITTWNELLSGYCFNCC-DADVLKTFCNIWESGVEVNGCTFFYVV 455 (796)
Q Consensus 386 ~~ll~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll 455 (796)
+.++.-....+++.....+++.+.. .+-..|.+++.+..+..- ---+..+|.-|++.+.+++..-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555555666655555555431 344467777777755544 334566777777767777777777777
Q ss_pred HHhccc
Q 036290 456 ETCCRS 461 (796)
Q Consensus 456 ~~~~~~ 461 (796)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 777664
No 347
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.08 E-value=50 Score=35.63 Aligned_cols=106 Identities=17% Similarity=0.073 Sum_probs=63.1
Q ss_pred HHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 036290 593 AYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCL 672 (796)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 672 (796)
...+.|+++.|.++. .+..+..-|..|.++..+.+++..|.+.|.+..+ |..|+-.+...|+-+.-..
T Consensus 646 lal~lgrl~iA~~la---~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLA---VEANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhcCcHHHHHHHH---HhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 345567777776655 2234566677777777777887777777766654 4445555556666555444
Q ss_pred HHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 036290 673 LFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQP 717 (796)
Q Consensus 673 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 717 (796)
+-....++ |. .|.-.-+|...|+++++.+++.+-+--|
T Consensus 714 la~~~~~~-g~------~N~AF~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 714 LASLAKKQ-GK------NNLAFLAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHHHHhh-cc------cchHHHHHHHcCCHHHHHHHHHhcCcCc
Confidence 44444433 32 1223345566777777777776654333
No 348
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.01 E-value=1.2e+02 Score=29.71 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=64.7
Q ss_pred HHhCCCccHHHHHHHH----HHHcCCCCCcchHHHHHHHhcccCChH-HHHHHHHHHHH---hCCC--CchhHHHHHHHH
Q 036290 322 FSENKNPGQTASLFHK----FILSGSRPNHVTFSILLRQCGKLLDLD-LGLQLQCLALH---CGFL--DEENVTSSLIYM 391 (796)
Q Consensus 322 ~~~~~~~~~a~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~---~g~~--~~~~~~~~ll~~ 391 (796)
+.+.|+...|-++-.. ..+.++.+|......++..+...+.-+ .-.++.+.+.+ .|-. -+......+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 4455555544443332 333455555555455544443332211 12233333332 2222 266777888889
Q ss_pred HHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHH
Q 036290 392 FCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIH 471 (796)
Q Consensus 392 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 471 (796)
|.+.|++.+|+.-|-.-.+++...+..++......|...+. |...-..++ -+...++...|...+
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLCLGNLRDANELF 164 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHHTTBHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHHhcCHHHHHHHH
Confidence 99999999998877555444443333333333333333222 222222233 334456777777777
Q ss_pred HHHHHh
Q 036290 472 GAIIKT 477 (796)
Q Consensus 472 ~~~~~~ 477 (796)
....+.
T Consensus 165 ~~f~~~ 170 (260)
T PF04190_consen 165 DTFTSK 170 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 349
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.80 E-value=52 Score=26.61 Aligned_cols=83 Identities=8% Similarity=0.048 Sum_probs=55.6
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 036290 55 ENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYV 134 (796)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 134 (796)
......++|..|.+-+...+- -...+--+-+.++...|++++|+..=.....||+..|-+|-. .+.|-.+.+...|.
T Consensus 17 tG~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 17 TGHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp HTTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 344567788888877766553 233444455667789999999966555667799999977765 47888889999999
Q ss_pred HHHHCC
Q 036290 135 DMKTNG 140 (796)
Q Consensus 135 ~m~~~~ 140 (796)
++-.+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 887665
No 350
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.60 E-value=1.2e+02 Score=29.73 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036290 545 EKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKL-GFNTEVYVASAVIDAYAKCGDIKGARMAF 607 (796)
Q Consensus 545 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 607 (796)
-.++..+...+|..++..+++....++|...... +...|...|..+++.....|+..-..+++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3455555556666666666666666666555543 45555666666666666666655555555
No 351
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.34 E-value=1.1e+02 Score=29.10 Aligned_cols=155 Identities=12% Similarity=0.089 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC---HHHHHHHHHHH
Q 036290 587 ASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ--PS---QATFVSVMSAC 661 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~---~~t~~~ll~~~ 661 (796)
++--..+|..+|.++.|-..++..-+ .....++++|+.+|++....-.. -+ ...+..+-+.+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak-------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK-------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH-------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 34445566666666655544421111 12234566666666665431000 01 12244445566
Q ss_pred hccCCHHHHHHHHHHhHh---hcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHh
Q 036290 662 SHKGLVDKGCLLFKSMDS---QYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM---P--FQP-SPTVYRSLLSGCRI 731 (796)
Q Consensus 662 ~~~g~~~~A~~~~~~~~~---~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~--~~p-~~~~~~~l~~~~~~ 731 (796)
.+..++++|-..+.+-.. ...-.|+ -..|...|-.+.-..++..|...++.- + ..+ +..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 777777776665544321 1112223 233555566667778999999999985 2 222 456788888887 6
Q ss_pred cCChHHHHHHHHHHHccCCCCCcc
Q 036290 732 HGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 732 ~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
.||.+++..++..-.-...++..+
T Consensus 240 ~gD~E~~~kvl~sp~~r~MDneya 263 (308)
T KOG1585|consen 240 EGDIEEIKKVLSSPTVRNMDNEYA 263 (308)
T ss_pred cCCHHHHHHHHcChHhhhhhHHHH
Confidence 689999988887655444444333
No 352
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.29 E-value=56 Score=31.69 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=47.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----
Q 036290 521 MSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK---- 596 (796)
Q Consensus 521 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 596 (796)
|.+++..++|.+++...-+--+.--+........-|-.|.+.+....+.++-..-.+.--.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777777665544432211222233333344456666666666666655553333333445555555543
Q ss_pred -cCCHHHHHHHH
Q 036290 597 -CGDIKGARMAF 607 (796)
Q Consensus 597 -~g~~~~A~~~~ 607 (796)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46777777666
No 353
>PF13934 ELYS: Nuclear pore complex assembly
Probab=66.62 E-value=1.2e+02 Score=28.89 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=10.1
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 036290 657 VMSACSHKGLVDKGCLLFKSM 677 (796)
Q Consensus 657 ll~~~~~~g~~~~A~~~~~~~ 677 (796)
++.++...|+.+.|..+++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 344444455555555555443
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.42 E-value=4e+02 Score=34.75 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC--------HH
Q 036290 651 QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM--PFQPS--------PT 720 (796)
Q Consensus 651 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--------~~ 720 (796)
..+|....+-+...|+++.|...+-.+.+. + -+..+.-.+..+...|+...|+.++++- ...|+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKES-R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 356888888888899999998877666522 2 3445556778888899999999888765 11111 22
Q ss_pred HHHHHHH--------HH-HhcCC--hHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 721 VYRSLLS--------GC-RIHGN--KELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 721 ~~~~l~~--------~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.-+.++. -| ...|+ -++-++.|..+.+..|+....|+.|+.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHH
Confidence 2222211 12 22233 345677888999999998888888885
No 355
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.80 E-value=1.6e+02 Score=34.34 Aligned_cols=232 Identities=8% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH---CCCCCCcccHHHHHHHHhccCCh--hHHHHHHHHHHHhcCCCChhHhhHHH
Q 036290 113 WTLIVSAAIQNGEFDMGLKMYVDMKT---NGFMPNEFAVGSVMKVCVSMGAS--EFGYSIHCFALKIRIEKNPFVGCSVL 187 (796)
Q Consensus 113 ~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li 187 (796)
|..|+--|...|+.++|+++|.+... ..-.--...+..++..+...+.- +...+.-++..+........++...-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred HHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCC-chHHH
Q 036290 188 NFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVAD-FDIGR 266 (796)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~ 266 (796)
..-+.+=+.+..... ......+-+..+++.+....-.++..-.+.++.-|+..=+ .....
T Consensus 587 ~~~~~sis~~~Vl~~-------------------l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 587 KQEAESISRDDVLNY-------------------LKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhhhccCCHHHHHHH-------------------hhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC
Q 036290 267 QIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN 346 (796)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~ 346 (796)
.--+...+.+ +...+..+....+.=....+++........-..+++-+ +.|+.++|+.++-...
T Consensus 648 ~kg~e~~E~~-------~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~--rl~khe~aL~Iyv~~L------- 711 (877)
T KOG2063|consen 648 GKGEEAPETT-------VREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLG--RLGKHEEALHIYVHEL------- 711 (877)
T ss_pred hccccchhhh-------HHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHh--hhhhHHHHHHHHHHHh-------
Q ss_pred cchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290 347 HVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCR 394 (796)
Q Consensus 347 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 394 (796)
++++.|..+....-+ ...++...|-.++..|..
T Consensus 712 --------------~d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 712 --------------DDIDAAESYCLPQYE-SDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred --------------cchhHHHHHHHHhcc-CCCcccHHHHHHHHHHhc
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.71 E-value=35 Score=31.37 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHHhHhhc--CCCCCchHHHHHHHHHHhcCChHHH
Q 036290 664 KGLVDKGCLLFKSMDSQY--GMQPSPDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 706 (796)
..+.++++.++-++.+-. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344455555444444221 1133344444555555555544444
No 357
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=63.36 E-value=1e+02 Score=26.87 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=20.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhH
Q 036290 629 HGLVSEAMEIFDKMKLANLQPSQATFVSV-MSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 629 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~A~~~~~~~~ 678 (796)
.++.+++..+++.|.- +.|+..-...+ ..-+...|+|++|..+|+++.
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 4444555555555544 33432221111 112344455555555555544
No 358
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=63.17 E-value=3.3e+02 Score=32.63 Aligned_cols=248 Identities=10% Similarity=-0.022 Sum_probs=136.0
Q ss_pred CCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036290 480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSC 559 (796)
Q Consensus 480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 559 (796)
.+++.+....+..+.+.+..+....+...+.+++...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 5566666666777777665544444445555555555445555554443221122233333322 4555555555555
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHH-HHHH
Q 036290 560 AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSE-AMEI 638 (796)
Q Consensus 560 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~ 638 (796)
...+..+ ...+...+ -.+|..+-...+.++.+.+..+. +. ..+..++...-...+.++...+..+. +...
T Consensus 709 ~~~~~~~-~~~l~~~L----~D~d~~VR~~Av~aL~~~~~~~~---l~-~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 709 RALRAGD-AALFAAAL----GDPDHRVRIEAVRALVSVDDVES---VA-GAATDENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HhhccCC-HHHHHHHh----cCCCHHHHHHHHHHHhcccCcHH---HH-HHhcCCCHHHHHHHHHHHHHhccccchhHHH
Confidence 5433211 11122211 13455555666666666554432 22 45566677777777777777765443 3344
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 036290 639 FDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPS 718 (796)
Q Consensus 639 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 718 (796)
+..+.. .+|...-...+.++...|..+.+...+..+.+ .++...-...+.++.+.+.. ++...+..+-..|+
T Consensus 780 L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~~ 851 (897)
T PRK13800 780 VRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALVEALTDPH 851 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHHHHhcCCC
Confidence 445443 46777777788888888876555444444442 24555555667777777653 45555555534667
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 719 PTVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 719 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
..+=...+.++.+.+....+...+..+++
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66666667777665445566777777665
No 359
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.94 E-value=92 Score=33.78 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=68.8
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036290 559 CAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEI 638 (796)
Q Consensus 559 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 638 (796)
..+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|.. ..-|..|+-.+...|+-+....+
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~------a~d~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLR------ARDLGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHh------hcchhhhhhhhhhcCChhHHHHH
Confidence 346677777777665543 566788888888888888888888832 23466777777778887766666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 036290 639 FDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSM 677 (796)
Q Consensus 639 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 677 (796)
-....+.|.. |...-++...|+++++.+++.+-
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 6666665522 22233566688888888877554
No 360
>PRK10941 hypothetical protein; Provisional
Probab=62.62 E-value=27 Score=34.27 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=29.0
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
+-.+|.+.++++.|....+.+ .+.|+ +.-+..-.-.|.+.|.+..|..-++.-++..|+++.+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 334444455555555555444 23332 2333444444444555555555555555555554443
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.62 E-value=49 Score=30.47 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHH
Q 036290 531 HEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKL---GFNTEVYVASAVIDAYAKCGDIKGAR 604 (796)
Q Consensus 531 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 604 (796)
+.|...|-.+...+.--++. .-..+..|....+.+++.+++-...+. +-.+++..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56666676666665443333 333334444456667777766665552 22566677777777777777776664
No 362
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=61.69 E-value=12 Score=22.28 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=9.4
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 036290 624 MAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~ 644 (796)
.++.+.|++++|.+.|+++.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 334444444444444444443
No 363
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.60 E-value=2.3e+02 Score=30.32 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=58.7
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036290 513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVID 592 (796)
Q Consensus 513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 592 (796)
|....-+++..+..+-.++-...+-.+|..-| -+...|..+++.|... ..+.-..+|+++.+..+. |+..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344556667777777777777777777653 4556677777777776 456666777777776665 5555566666
Q ss_pred HHHhcCCHHHHHHHH
Q 036290 593 AYAKCGDIKGARMAF 607 (796)
Q Consensus 593 ~~~~~g~~~~A~~~~ 607 (796)
.|.+ ++.+.+..+|
T Consensus 141 ~yEk-ik~sk~a~~f 154 (711)
T COG1747 141 KYEK-IKKSKAAEFF 154 (711)
T ss_pred HHHH-hchhhHHHHH
Confidence 6665 6666666555
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.63 E-value=26 Score=32.49 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 663 HKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..++.+......+.+.+-....|++..|..++.++...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444333333333333345566666666666666666666666665555
No 365
>PRK12798 chemotaxis protein; Reviewed
Probab=60.23 E-value=2.2e+02 Score=29.70 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHhccCCC---CChhHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHH
Q 036290 597 CGDIKGARMAFDQSFNS---NDVIVYNTLIMAY-AHHGLVSEAMEIFDKMKLANLQPSQAT----FVSVMSACSHKGLVD 668 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~~ 668 (796)
.|+.++|.+.+...-+. +....+-.|+.+- ....+..+|+++|++.+- ..|-... ...-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57777777777333222 2445556666553 335567777777777765 4554333 222233446677777
Q ss_pred HHHHHHHHhHhhcCCCCCch-HHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036290 669 KGCLLFKSMDSQYGMQPSPD-CYGCLVDMLSRNG---YLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEK 744 (796)
Q Consensus 669 ~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (796)
++..+-.....++...|=.. .+..++..+.+.+ ..+.-..++..|.-.-...+|-.+...-...|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77776666665654444422 2223333444333 2333334444442222235677777777777888888777777
Q ss_pred HHccCC
Q 036290 745 LLLLLP 750 (796)
Q Consensus 745 ~~~~~p 750 (796)
++.+.+
T Consensus 283 A~~L~~ 288 (421)
T PRK12798 283 ALKLAD 288 (421)
T ss_pred HHHhcc
Confidence 777653
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.93 E-value=1e+02 Score=30.03 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=48.4
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----Hh
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNSN---DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSA-----CS 662 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-----~~ 662 (796)
|+++...+++.+++...-+....| .......-|-.|.+.|.+..+.++-..-...--.-+...|..++.- +.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 677777788887765543433333 3344445566677777777777766655542111122335554443 34
Q ss_pred ccCCHHHHHHHH
Q 036290 663 HKGLVDKGCLLF 674 (796)
Q Consensus 663 ~~g~~~~A~~~~ 674 (796)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 467777777776
No 367
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.80 E-value=1.1e+02 Score=31.87 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=32.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhH
Q 036290 626 YAHHGLVSEAMEIFDKMKLANLQPSQA--TFVSVMSACS--HKGLVDKGCLLFKSMD 678 (796)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~A~~~~~~~~ 678 (796)
+...+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34667777777777777775 454443 3444444443 3556777777777665
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.73 E-value=17 Score=27.38 Aligned_cols=45 Identities=7% Similarity=0.030 Sum_probs=19.0
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHH
Q 036290 664 KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKH 708 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 708 (796)
..+.++|+..|....++..-.|+ -.++..|+.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444433211122 2334444444555555444443
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.65 E-value=29 Score=32.18 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 647 LQPSQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 647 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
..|+..+|..++.++...|+.++|.+..+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555555555555555555555554
No 370
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.60 E-value=3.3e+02 Score=31.48 Aligned_cols=183 Identities=9% Similarity=-0.095 Sum_probs=82.8
Q ss_pred hcCCchHHHHHHHHHHhc----CCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHH-----HHHHh
Q 036290 425 FNCCDADVLKTFCNIWES----GVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLI-----KSYVN 495 (796)
Q Consensus 425 ~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~ 495 (796)
..|+++++.++.+..... -..+....+..+..+..-.|+++.|..+.....+..-.-+...+.... ..+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 456667776666655442 123344445555555666677777777766665543333443333322 22344
Q ss_pred cCCc--chHHHHHhcCCC----------CCHhhHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHh
Q 036290 496 FGQL--DNSFEFSNGAER----------LDMASWGAMMSALVHQ-GHNHEAVTIFHSLVEAGEKPDEYILG--TILNSCA 560 (796)
Q Consensus 496 ~g~~--~~A~~~~~~~~~----------~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~ 560 (796)
.|+. .+....|..... .-...+..+..++.+. +...++..-+.--......|-...+. .+.....
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~ 629 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF 629 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH
Confidence 4522 222222222211 1122334444444441 11222222222222222222222222 4556666
Q ss_pred ccCchHHHHHHHHHHHHhCCCCc----hhHHHHHHH--HHHhcCCHHHHHHHH
Q 036290 561 AIGAYQRTKSIHPFVIKLGFNTE----VYVASAVID--AYAKCGDIKGARMAF 607 (796)
Q Consensus 561 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~--~~~~~g~~~~A~~~~ 607 (796)
..|+.+.|...+.++......++ -......+. .....|+.+.+....
T Consensus 630 ~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 630 LRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWL 682 (894)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHH
Confidence 77888888887777776433332 111112222 233456666665555
No 371
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.34 E-value=2.7e+02 Score=30.36 Aligned_cols=88 Identities=16% Similarity=0.069 Sum_probs=48.2
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHH-hcCChHHHHHHHHhC------CCCCCHHHHH-HHHHH
Q 036290 659 SACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLS-RNGYLEDAKHVIEIM------PFQPSPTVYR-SLLSG 728 (796)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~------~~~p~~~~~~-~l~~~ 728 (796)
..+.+.|-+..|.++.+.+. .+.|+ +.....+|+.|+ ++.+++--+++++.. ..-|+. .|. .++..
T Consensus 350 ~~l~~RGC~rTA~E~cKlll---sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f 425 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLL---SLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARF 425 (665)
T ss_pred HHHHhcCChHHHHHHHHHHh---hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHH
Confidence 34556677777777776666 44444 555556666664 455666666666554 123443 333 23333
Q ss_pred HHhcCC---hHHHHHHHHHHHccCC
Q 036290 729 CRIHGN---KELGEWASEKLLLLLP 750 (796)
Q Consensus 729 ~~~~g~---~~~A~~~~~~~~~~~p 750 (796)
|..... ...|..++.++++..|
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHHHhCc
Confidence 333322 4566666666666666
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.13 E-value=22 Score=23.47 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=14.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 036290 622 LIMAYAHHGLVSEAMEIFDKMKLA 645 (796)
Q Consensus 622 li~~~~~~g~~~~A~~~~~~m~~~ 645 (796)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666543
No 373
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.08 E-value=1.9e+02 Score=28.57 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhcCChHH
Q 036290 617 IVYNTLIMAYAHHGLVSE 634 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~ 634 (796)
..|..|+.+++..|+.+-
T Consensus 322 K~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred HhhhHHHHHHhcCChHHH
Confidence 456666666666666553
No 374
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.48 E-value=1.5e+02 Score=28.08 Aligned_cols=143 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHH
Q 036290 86 IAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGY 165 (796)
Q Consensus 86 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 165 (796)
+..|++.-++.-|-..++++.+| +.+..++++ |.+..+..-..++++-....++..+.....+++ +...||..+|.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEP-IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQal 212 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEP-IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQAL 212 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhh-HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHH
Q ss_pred HHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 036290 166 SIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMD 245 (796)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 245 (796)
..+ .+....-..-.++.+|+-..+|.......++..|.+ +++++|.+++.++-+.|..|.
T Consensus 213 NnL-------------------Qst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 213 NNL-------------------QSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHH-------------------HHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Q ss_pred HhhHHHH
Q 036290 246 KYTFINA 252 (796)
Q Consensus 246 ~~~~~~l 252 (796)
...-+..
T Consensus 273 Dii~~~F 279 (333)
T KOG0991|consen 273 DIITTLF 279 (333)
T ss_pred HHHHHHH
No 375
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.37 E-value=97 Score=25.15 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 036290 464 QQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEA 543 (796)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 543 (796)
.++|..|.+-+...+- ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|-.+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4555555555555442 222233334456677888888855555555678777766543 4677777777777777655
Q ss_pred CCCCCHHHH
Q 036290 544 GEKPDEYIL 552 (796)
Q Consensus 544 g~~p~~~t~ 552 (796)
| .|....|
T Consensus 99 g-~~~~q~F 106 (116)
T PF09477_consen 99 G-SPELQAF 106 (116)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 5 4443333
No 376
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.29 E-value=3.3e+02 Score=30.80 Aligned_cols=163 Identities=10% Similarity=0.008 Sum_probs=82.2
Q ss_pred cchHHHHHHHHH-hcCCchHHHHHHHHHHHCCCCCCc----ccHHHH-HHHHhccCChhHHHHHHHHHHHhcCC----CC
Q 036290 110 LVSWTLIVSAAI-QNGEFDMGLKMYVDMKTNGFMPNE----FAVGSV-MKVCVSMGASEFGYSIHCFALKIRIE----KN 179 (796)
Q Consensus 110 ~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~----~~ 179 (796)
..++-.+.+.+. ...+.+.|...+++.....-+++- .....+ ++.+.+.+... |...++..++.--. +-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345555555554 566777777777765433222111 111222 23333333333 66666665543211 12
Q ss_pred hhHhhHH-HHHHHccCChhHHHHHhhccCC-----CC--ceeHHHHHHHH--HhCCCchHHHHHHHHHHHCCC-------
Q 036290 180 PFVGCSV-LNFYAKLGDVAAAERVFYSISS-----DD--VGCWNAMIGGY--AHCGYGFEALNVVSSMLFEGI------- 242 (796)
Q Consensus 180 ~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~------- 242 (796)
...+.-+ +..+...++...|.+.++.+.. .| +..+-.++.+. .+.+.++++.+.++.+.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2222222 2222233677777777766542 12 22222333332 355667788888877743222
Q ss_pred --CCCHhhHHHHHHhhc--cCCCchHHHHHHHHHH
Q 036290 243 --TMDKYTFINALQGCS--LVADFDIGRQIHGLII 273 (796)
Q Consensus 243 --~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 273 (796)
.|-..+|..+++.++ ..|+++.+.+.+..+.
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566777777765 4677777777666554
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.84 E-value=30 Score=26.16 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=32.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHhccCCHHHHHHHH
Q 036290 628 HHGLVSEAMEIFDKMKLANLQP-S-QATFVSVMSACSHKGLVDKGCLLF 674 (796)
Q Consensus 628 ~~g~~~~A~~~~~~m~~~g~~p-~-~~t~~~ll~~~~~~g~~~~A~~~~ 674 (796)
...+.++|+..|....+.-..| + -.++..++.+++..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888877754333 2 245677788888888888877654
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.79 E-value=2.1e+02 Score=28.24 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH----hhcCCCCCchH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD----SQYGMQPSPDC 689 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~p~~~~ 689 (796)
+++.....|..+|.+.+|.++-++.+. +.| +...+-.++..+...|+--.+.+-++.+. ..+|+..+-.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 445556778888888888888888877 666 66667778888888887666655555443 23455555433
No 379
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.65 E-value=1.1e+02 Score=27.71 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC-----------HHHHHHHHHHhHhhcCCCCCchHHHHHHHHH
Q 036290 633 SEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGL-----------VDKGCLLFKSMDSQYGMQPSPDCYGCLVDML 697 (796)
Q Consensus 633 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~-----------~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 697 (796)
++|..-|++... +.|+. .++..+-.++...+. +++|...|++.. ..+|+-..|+.-+.+.
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv---~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV---DEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH---hcCCCcHHHHHHHHHH
Confidence 344444444444 55533 344444444433221 344444444444 3466666666555544
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.29 E-value=15 Score=24.15 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=14.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHC
Q 036290 116 IVSAAIQNGEFDMGLKMYVDMKTN 139 (796)
Q Consensus 116 ll~~~~~~~~~~~a~~~~~~m~~~ 139 (796)
+.++|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666543
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.06 E-value=29 Score=36.30 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=71.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQPSQATFVS-VMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY 702 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 702 (796)
.+...+.++.|..++.+.++ +.||...|-. -..++.+.+++..|+.=+..+. ...|+ ...|-.-..++.+.++
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai---e~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI---ELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh---hcCchhhheeeeccHHHHhHHH
Confidence 34556788888888888888 7786655433 3367788888888888777766 44566 4555555556666677
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 036290 703 LEDAKHVIEIM-PFQPSPTVYRSLLSGCRIH 732 (796)
Q Consensus 703 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 732 (796)
+.+|...|+.. .+.|+..-...++.-|-+.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 77888777777 5778777777777666443
No 382
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.56 E-value=3.6e+02 Score=30.67 Aligned_cols=73 Identities=7% Similarity=-0.032 Sum_probs=36.3
Q ss_pred HHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccC
Q 036290 287 LIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLL 361 (796)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 361 (796)
.+..+.+.+++......+.. ...+...-.....+....|+.++|.+..+.+=..| ......+..++..+.+.|
T Consensus 105 ~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 34444556666666653322 22344444555666666777666665555553333 122334444444444333
No 383
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=54.85 E-value=1.3e+02 Score=28.65 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=58.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHH
Q 036290 622 LIMAYAHHGLVSEAMEIFDKMKLANLQ-PSQA--TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLS 698 (796)
Q Consensus 622 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~--t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 698 (796)
++--+...|+++.|+++.+..++.|.. |+.. ++-+++ .|+.........+. |-..++.....+...-.
T Consensus 89 ~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~a-g~~~e~~~~~~~~~l~~ 159 (230)
T PHA02537 89 VMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASA-GESVEPYFLRVFLDLTT 159 (230)
T ss_pred eeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHc-CCCCChHHHHHHHHHHh
Confidence 333456789999999999999998876 4432 222222 12222222222222 43333433333222111
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCChHHHHHHHHHHHccCCCC
Q 036290 699 RNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCR---------IHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
.. .|+-+.....|..+...+. ..++...|...++++++++|+-
T Consensus 160 ~~-----------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 160 EW-----------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred cC-----------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 11 1221222234555555553 3457789999999999999853
No 384
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.71 E-value=37 Score=21.20 Aligned_cols=32 Identities=16% Similarity=-0.072 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH--HHHccCCCC
Q 036290 721 VYRSLLSGCRIHGNKELGEWASE--KLLLLLPKN 752 (796)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~ 752 (796)
.|..+...+..+|+.++|+++++ -+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35566677788888888888844 666666654
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.30 E-value=17 Score=38.01 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=78.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 036290 658 MSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGN 734 (796)
Q Consensus 658 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~ 734 (796)
.......++++.|..++.++. .+.|+ ...|..-..++.+.+++..|+.-..++ ...|.. ..|..-..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 344566788999999999998 67897 445555558889999999998776665 556653 455555667778889
Q ss_pred hHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 735 KELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 735 ~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
+.+|...++....+.|+++.+...+..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 999999999999999999998777666
No 386
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.03 E-value=9.6 Score=22.49 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHccCCCCCcceE
Q 036290 733 GNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 733 g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
|+.+.+..+++++++..|.++..|.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHH
Confidence 5788899999999999887776654
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.59 E-value=49 Score=27.61 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHH
Q 036290 128 MGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALK 173 (796)
Q Consensus 128 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 173 (796)
+..+-++.+...++.|++......|++|.+.+|+..|..+++-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4556677777778889999999999999999999999998887764
No 388
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.35 E-value=2.4e+02 Score=27.63 Aligned_cols=31 Identities=13% Similarity=0.077 Sum_probs=21.1
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCcccHHHH
Q 036290 421 SGYCFNCCDADVLKTFCNIWESGVEVNGCTF 451 (796)
Q Consensus 421 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 451 (796)
+-..+.+++++|...+.++...|+..|..+.
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 3445667777777777777777776666554
No 389
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=51.83 E-value=1e+02 Score=25.88 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHH
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVY-RSLLSGCRIHGNKELGEWASEKLL 746 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 746 (796)
..+..++..++.-.|..++|.++++..+..++.... ..++..|.+..+.++..++-++.+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 567778888899999999999999999888877554 578999999988888777766654
No 390
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.82 E-value=35 Score=36.53 Aligned_cols=92 Identities=16% Similarity=0.029 Sum_probs=57.9
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHH
Q 036290 663 HKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-P-FQPSPTVYRSLLSGCRIHGNKELG 738 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A 738 (796)
..|+...|...+..+. ...|. ......|...+.+.|-.-+|-.++.+. . ..-.+-++..+..++....|.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 4667777777766665 33443 233445666677777666676666544 2 223445666677777777777777
Q ss_pred HHHHHHHHccCCCCCcceE
Q 036290 739 EWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 739 ~~~~~~~~~~~p~~~~~~~ 757 (796)
++.++.+++++|+++....
T Consensus 696 ~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECEN 714 (886)
T ss_pred HHHHHHHHhcCCCChhhHH
Confidence 7777777777777766543
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.13 E-value=28 Score=25.05 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290 632 VSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 632 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 679 (796)
.+...++++.++. ..-|..--..+|.++...|++++|.++.+++..
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444443 223444445566677777777777776666653
No 392
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.96 E-value=1.8e+02 Score=27.44 Aligned_cols=94 Identities=19% Similarity=0.267 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP---SQATF--VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYG 691 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 691 (796)
.-+|.|+--|.-...+.+|.+.|.. +.|+.| |..++ ..-|......|+.++|++...+.... -+.-|.+.+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 3345555444444444445444433 333444 33333 23455667778888887777666533 3333433333
Q ss_pred HHHHH----HHhcCChHHHHHHHHhC
Q 036290 692 CLVDM----LSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 692 ~l~~~----~~~~g~~~~A~~~~~~~ 713 (796)
.|... +.|.|..++|+++.+.-
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22221 35677777777777654
No 393
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=50.89 E-value=3.3e+02 Score=28.85 Aligned_cols=194 Identities=9% Similarity=-0.085 Sum_probs=89.8
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 036290 98 GLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIE 177 (796)
Q Consensus 98 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 177 (796)
+..+.+.+..++.........++.+.+...-.-. +..+... ++...-...+.+++..+. + +...+....+ .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~-L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d 158 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW-LEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---H 158 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH-HHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---C
Confidence 4444455555555556666666665555443333 3333321 233334444555554331 1 1122222222 5
Q ss_pred CChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhc
Q 036290 178 KNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCS 257 (796)
Q Consensus 178 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 257 (796)
+|..+...-+..++..++.+....+-.-....|...-..-+.+....|. .+|...+...... ++....-.+.....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~la 234 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLA 234 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHH
Confidence 5666666666666666655444444333344455555555556666666 5555555542221 12112222222222
Q ss_pred cCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCC
Q 036290 258 LVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADK 310 (796)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 310 (796)
..|.. .+...+....+. +. +-...+.++.+.|+...+.-+.+.|.++
T Consensus 235 l~~~~-~a~~~L~~ll~d---~~--vr~~a~~AlG~lg~p~av~~L~~~l~d~ 281 (410)
T TIGR02270 235 VAGGP-DAQAWLRELLQA---AA--TRREALRAVGLVGDVEAAPWCLEAMREP 281 (410)
T ss_pred hCCch-hHHHHHHHHhcC---hh--hHHHHHHHHHHcCCcchHHHHHHHhcCc
Confidence 22222 333333333322 12 4456666667777776666666666543
No 394
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.66 E-value=4e+02 Score=29.72 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=21.6
Q ss_pred CHHHHHHHHhccCCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHHHCC
Q 036290 599 DIKGARMAFDQSFNSNDVIVYNTLIMAYAHH---GLVSEAMEIFDKMKLAN 646 (796)
Q Consensus 599 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 646 (796)
+.+.|..++......++...---+...+... .+...|.++|....+.|
T Consensus 308 d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3444555554444333333333333333322 24456666666665555
No 395
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=50.17 E-value=3.4e+02 Score=28.75 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKG 670 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 670 (796)
+...|+++.+...+ ..... ....+..++++...+.|++++|..+-..|....+. +..............|-++++
T Consensus 333 ~~~lg~ye~~~~~~-s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDI-SDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHh-hchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 44556666666666 22222 24445666777777777777777777777665444 222222222223345567777
Q ss_pred HHHHHHhH
Q 036290 671 CLLFKSMD 678 (796)
Q Consensus 671 ~~~~~~~~ 678 (796)
...|+++.
T Consensus 411 ~~~wk~~~ 418 (831)
T PRK15180 411 YHYWKRVL 418 (831)
T ss_pred HHHHHHHh
Confidence 77777665
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.20 E-value=81 Score=26.40 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 036290 634 EAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLV 694 (796)
Q Consensus 634 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 694 (796)
+..+-++.+..-.+.|+......-+++|.+.+++..|..+|+-++.+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34455666666668899999999999999999999999999888744 333334455444
No 397
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.08 E-value=63 Score=21.76 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=21.7
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036290 221 YAHCGYGFEALNVVSSMLFEGITMDKYTFINALQ 254 (796)
Q Consensus 221 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 254 (796)
..+.|-..++..+++.|.+.|+..+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666667777777777776666666655554
No 398
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.91 E-value=2.8e+02 Score=27.48 Aligned_cols=22 Identities=14% Similarity=0.449 Sum_probs=15.4
Q ss_pred CHhhHHHHHHHHHHcCChhHHH
Q 036290 513 DMASWGAMMSALVHQGHNHEAV 534 (796)
Q Consensus 513 ~~~~~~~li~~~~~~~~~~~A~ 534 (796)
....|..++.+++..|+.+-.+
T Consensus 320 hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHHH
Confidence 4456777888888888776543
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.86 E-value=56 Score=25.90 Aligned_cols=20 Identities=30% Similarity=0.184 Sum_probs=11.0
Q ss_pred HHhcCChHHHHHHHHHHHcc
Q 036290 729 CRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 729 ~~~~g~~~~A~~~~~~~~~~ 748 (796)
....|++++|...+++++++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 44555556665555555543
No 400
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.66 E-value=2.5e+02 Score=26.76 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=33.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHH-HHhc--cCCHHHHHHHHHHhHhhcCCCCC
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQPSQATFVS---VMS-ACSH--KGLVDKGCLLFKSMDSQYGMQPS 686 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~-~~~~--~g~~~~A~~~~~~~~~~~~~~p~ 686 (796)
.-+..+++.+|+.+|++.....+..+..-|.. ++. ++|+ ..+.-.+...+++.. ...|+
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~---~~dP~ 227 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQ---ELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHH---hcCCc
Confidence 34567889999999999988655544433321 222 2232 245545555555555 44555
No 401
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.49 E-value=2.9e+02 Score=27.51 Aligned_cols=147 Identities=16% Similarity=0.007 Sum_probs=73.5
Q ss_pred CHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------CCH
Q 036290 599 DIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHK-------GLV 667 (796)
Q Consensus 599 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------g~~ 667 (796)
+..+|.+++..............|...|.. ..+..+|.+++++..+.|..+...+...+-..+... -+.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 355566666444444444444445555444 236677777777777766544322222232223221 122
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------
Q 036290 668 DKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR----NGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHG---------- 733 (796)
Q Consensus 668 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---------- 733 (796)
..|...+.++... + ++.....+...|.. ..+.++|..+|++....-+......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~ 246 (292)
T COG0790 172 KKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLT 246 (292)
T ss_pred HhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcc
Confidence 3677777766644 3 33344445544433 236677777777662222232333333 344444
Q ss_pred -----ChHHHHHHHHHHHccCC
Q 036290 734 -----NKELGEWASEKLLLLLP 750 (796)
Q Consensus 734 -----~~~~A~~~~~~~~~~~p 750 (796)
+...|...+...-...+
T Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 247 AAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cccCCCHHHHHHHHHHHHHcCC
Confidence 66666666666655544
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.25 E-value=61 Score=22.42 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=22.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036290 622 LIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSV 657 (796)
Q Consensus 622 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 657 (796)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 45567778888888888888877 67765544443
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.10 E-value=1.2e+02 Score=23.53 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHH
Q 036290 293 KSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTA 332 (796)
Q Consensus 293 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 332 (796)
..|+.+.|.+++..+. +....|..++.++-..|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5577888888888888 77778888888887777765543
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.06 E-value=1.3e+02 Score=24.62 Aligned_cols=55 Identities=9% Similarity=0.032 Sum_probs=34.4
Q ss_pred HHHHHHHHccCChhHHHHHhcccCC----------CCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 036290 83 NNLIAMYSKCGYFGWGLRVFDEMAE----------RNLVSWTLIVSAAIQNGEFDMGLKMYVDMKT 138 (796)
Q Consensus 83 ~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 138 (796)
++|+.+|... +......++..=-. ....-|..++.-|-.+|..++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4566666666 44444444431100 1122478888888888888888888888876
No 405
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.96 E-value=1.2e+02 Score=23.67 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=27.4
Q ss_pred hcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHH
Q 036290 394 RCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADV 432 (796)
Q Consensus 394 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 432 (796)
..|+.+.|.+++..++ +....|..++.++-..|+.+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577777888887777 7777777777777777665444
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.89 E-value=45 Score=22.43 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=17.2
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcccHHHHHH
Q 036290 122 QNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMK 153 (796)
Q Consensus 122 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 153 (796)
+.|-..++..++++|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555555555555555555555555544443
No 407
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.66 E-value=3.7e+02 Score=28.55 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=47.3
Q ss_pred CCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhc---CCCCcchHHHHH
Q 036290 243 TMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERM---ADKDVISWNTLF 319 (796)
Q Consensus 243 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 319 (796)
..+......++..+ .|+...+..+++.....+...+. +....++... ..++......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 45555555555543 67777777777665443211111 1112222211 112222333444
Q ss_pred HHHHh---CCCccHHHHHHHHHHHcCCCCCcchHHHH
Q 036290 320 GGFSE---NKNPGQTASLFHKFILSGSRPNHVTFSIL 353 (796)
Q Consensus 320 ~~~~~---~~~~~~a~~l~~~m~~~g~~p~~~t~~~l 353 (796)
.++.+ ..+.+.|+..+..|.+.|..|....-..+
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~ 271 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLV 271 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44443 47788888888888888777764433333
No 408
>PHA03100 ankyrin repeat protein; Provisional
Probab=47.09 E-value=3.8e+02 Score=29.12 Aligned_cols=19 Identities=5% Similarity=0.015 Sum_probs=9.3
Q ss_pred HHHHHccCChhHHHHHhcc
Q 036290 86 IAMYSKCGYFGWGLRVFDE 104 (796)
Q Consensus 86 i~~~~~~g~~~~A~~~~~~ 104 (796)
+...++.|+.+-+..+++.
T Consensus 39 L~~A~~~~~~~ivk~Ll~~ 57 (480)
T PHA03100 39 LYLAKEARNIDVVKILLDN 57 (480)
T ss_pred hhhhhccCCHHHHHHHHHc
Confidence 3334455555555555544
No 409
>PRK10941 hypothetical protein; Provisional
Probab=46.33 E-value=1.8e+02 Score=28.60 Aligned_cols=56 Identities=9% Similarity=-0.038 Sum_probs=24.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 621 TLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
.+-.+|.+.++++.|+++.+.+.. +.|+. .-+.--.-.|.+.|.+..|..-++...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 333444455555555555555554 34422 222222223444444444444444444
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.98 E-value=22 Score=34.57 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=38.7
Q ss_pred HhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 698 SRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 698 ~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
.+.|+.++|..+|+.. .+.|+. .....+....-.+++.-+|.+++-+++-+.|.++.+.+.-.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3567777777777665 455543 34444444444556677777777777777777777655443
No 411
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.88 E-value=91 Score=29.63 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 690 YGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
+..+..++...|++-++++.-.+. ...| +...|..-..+....-+..+|+.-+.++++++|.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 334455666677777777666655 3334 4456666666666666777788888888887774
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.96 E-value=1e+02 Score=25.28 Aligned_cols=27 Identities=11% Similarity=0.367 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036290 516 SWGAMMSALVHQGHNHEAVTIFHSLVE 542 (796)
Q Consensus 516 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 542 (796)
-|..++.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888766
No 413
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.95 E-value=3.6e+02 Score=27.30 Aligned_cols=80 Identities=9% Similarity=-0.085 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhc-C---CCChhHhhHHHHHHHccCChhHHHHHhhccCC-CCceeHHHHHHHHHhCCCchHHHHHHH
Q 036290 161 SEFGYSIHCFALKIR-I---EKNPFVGCSVLNFYAKLGDVAAAERVFYSISS-DDVGCWNAMIGGYAHCGYGFEALNVVS 235 (796)
Q Consensus 161 ~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 235 (796)
.+.+.+.+......+ . ..++.....++....+.|+.+.-..+++.... ++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 455666666655532 1 34555566666666666665554445444433 233344555555555555555555555
Q ss_pred HHHHC
Q 036290 236 SMLFE 240 (796)
Q Consensus 236 ~m~~~ 240 (796)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 55443
No 414
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.77 E-value=5.8e+02 Score=29.65 Aligned_cols=19 Identities=0% Similarity=-0.073 Sum_probs=11.5
Q ss_pred cccCcHHHHHHHHHHHHHh
Q 036290 459 CRSENQQMVGQIHGAIIKT 477 (796)
Q Consensus 459 ~~~~~~~~a~~~~~~~~~~ 477 (796)
....++++|..+..++...
T Consensus 426 ~s~~r~~ea~~li~~l~~~ 444 (894)
T COG2909 426 ASQHRLAEAETLIARLEHF 444 (894)
T ss_pred HHccChHHHHHHHHHHHHH
Confidence 3445677777776666543
No 415
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.39 E-value=2.6e+02 Score=25.49 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhHhhcCCCCC-chH-----HHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036290 667 VDKGCLLFKSMDSQYGMQPS-PDC-----YGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSG 728 (796)
Q Consensus 667 ~~~A~~~~~~~~~~~~~~p~-~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 728 (796)
++.|+.+|+.+.+.+...-+ ... -...+-.|.+.|.+++|.+++++.--.|+......-+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 56778888777755332111 111 112345677888888888888887335555444433333
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.20 E-value=1.9e+02 Score=24.56 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=25.8
Q ss_pred HHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHH
Q 036290 669 KGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIE 711 (796)
Q Consensus 669 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 711 (796)
.+.++|+.|.++ |+--. ...|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666654 55555 5556666666666666666666665
No 417
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=42.27 E-value=3e+02 Score=27.49 Aligned_cols=20 Identities=10% Similarity=-0.120 Sum_probs=13.6
Q ss_pred HHHHHHHHHHccCCCCCcce
Q 036290 737 LGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 737 ~A~~~~~~~~~~~p~~~~~~ 756 (796)
.|.+...++++.+|.-|.+.
T Consensus 380 ~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHH
Confidence 46667777778888666553
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.91 E-value=3.5e+02 Score=26.54 Aligned_cols=123 Identities=13% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCchH-HHHHHHHHHHH---h--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 036290 541 VEAGEKPDEYILGTILNSCAAIGAYQ-RTKSIHPFVIK---L--GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN 614 (796)
Q Consensus 541 ~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~---~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 614 (796)
.+.+.++|......++..+...+.-+ .-..+.+.+++ . ...-++.....+...|.+.|++.+|...| -....+
T Consensus 41 ~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf-l~~~~~ 119 (260)
T PF04190_consen 41 EKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF-LLGTDP 119 (260)
T ss_dssp HHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH-HTS-HH
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH-HhcCCh
Confidence 33455566555555554444332211 12222222222 1 22246677888889999999999999888 222222
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHhh
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFV-SVMSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
+...+..++.. ... .|.+.+...|. ..+--|...++...|...++...++
T Consensus 120 ~~~~~~~ll~~---------------~~~-~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 120 SAFAYVMLLEE---------------WST-KGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHH---------------HHH-HTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH---------------HHH-hcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22222112221 111 22222222221 1222355567788888877776644
No 419
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.58 E-value=1.6e+02 Score=22.76 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 368 QLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS 409 (796)
Q Consensus 368 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 409 (796)
++|+.....|+..|..+|..+++.+.-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777888888888777777665555555555555554
No 420
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.45 E-value=96 Score=32.59 Aligned_cols=40 Identities=28% Similarity=0.208 Sum_probs=26.7
Q ss_pred CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290 714 PFQPSP--TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 714 ~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
+++|.. -+.++-+..+.|.+|+..|-.+.++++++.|...
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 555543 3566677778888999999999999998888543
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.88 E-value=38 Score=28.65 Aligned_cols=33 Identities=24% Similarity=0.562 Sum_probs=25.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036290 525 VHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSC 559 (796)
Q Consensus 525 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 559 (796)
-..|.-.+|..+|.+|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3457778899999999999999984 55666543
No 422
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.52 E-value=4.3e+02 Score=26.69 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChH
Q 036290 632 VSEAMEIFDKMKLANLQPSQATFVSVMSACSH------KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLE 704 (796)
Q Consensus 632 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~------~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 704 (796)
++++..++++....+. |........|.++-. .-+|..-..+|+.+. .+.|+ +.+.|.-+ ++.+..-.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHH-HHHHhhhHH
Confidence 4677788888887764 777777777766532 236778888888777 56787 44455433 344444566
Q ss_pred HHHHHHHhCCCCCCH---HHHHHH-HHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 705 DAKHVIEIMPFQPSP---TVYRSL-LSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 705 ~A~~~~~~~~~~p~~---~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
.++..++.++-.|.. ..|... ...+.+.|+.++|...|++++.+.++....
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 777777777544322 233333 444778899999999999999988876554
No 423
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=38.29 E-value=4.8e+02 Score=27.15 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=70.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHH
Q 036290 629 HGLVSEAMEIFDKMKLANLQPSQAT--------FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDM 696 (796)
Q Consensus 629 ~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~ 696 (796)
.+++.+|.++-+.....-..-|..| |-.+-.++...|+...-...+....+...+..| ....+.|++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 4566666666555443211123333 223334455566666655555554433344444 3445667777
Q ss_pred HHhcCChHHHHHHHHhCCCCC--CHHHH----HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 697 LSRNGYLEDAKHVIEIMPFQP--SPTVY----RSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~p--~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
|...+.++.|..+..+...+- +..-| .-+.....-++++..|.+.+-.++...|+
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 778888888888888874221 11111 22233345668888899888888888887
No 424
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=38.22 E-value=3.5e+02 Score=25.47 Aligned_cols=60 Identities=17% Similarity=0.063 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHH--HHhcCChHHHHHHHHHHHH
Q 036290 585 YVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMA--YAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~ 644 (796)
.+||.+.-.+...|+++.|.+.|+..++-....-|..+=++ +--.|++.-|.+-+.+.-+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 45555655666667777777666444443322223333222 2234566666655554444
No 425
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.68 E-value=2.7e+02 Score=23.98 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290 648 QPSQATFVSVMSACSHKG---LVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP 719 (796)
Q Consensus 648 ~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 719 (796)
.++..+--.+.+++.+.. +..+.+.++++..++ -.|+ ......|.-++.|.|+++++..+++.+ ..+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 556666566677776654 466778888888742 2333 555566788889999999999998877 455554
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.08 E-value=59 Score=32.07 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=31.6
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHH
Q 036290 213 CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINA 252 (796)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 252 (796)
-|+.-|....+.|++++|+.++++.++.|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3778888888899999999999998888877666666433
No 427
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.59 E-value=1.9e+02 Score=32.43 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHcCCCCCcchHHH
Q 036290 326 KNPGQTASLFHKFILSGSRPNHVTFSI 352 (796)
Q Consensus 326 ~~~~~a~~l~~~m~~~g~~p~~~t~~~ 352 (796)
++..+|.+.+-.+....+.|...-...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~L 535 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWPLL 535 (566)
T ss_dssp ---------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHHHH
Confidence 555555555555555555554444333
No 428
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.24 E-value=5.7e+02 Score=27.39 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=64.5
Q ss_pred HHhcCChHHHHHHHHHHH---HCCC--CCCH--HH-HHHHHHHHhccCCHHHHHHHHHHhHh------hcCCCCCc----
Q 036290 626 YAHHGLVSEAMEIFDKMK---LANL--QPSQ--AT-FVSVMSACSHKGLVDKGCLLFKSMDS------QYGMQPSP---- 687 (796)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~---~~g~--~p~~--~t-~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~p~~---- 687 (796)
+--.|++.+|.+++...- +.|. .|.- -. ||.|---..+.|.+..+..+|....+ +.|++|.+
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445788888888875532 1221 1211 11 23333233456666666666666553 12555542
Q ss_pred ------hHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 036290 688 ------DCYGCLVDMLSRNGYLEDAKHVIEIM--PFQPSPTVYRSLLSGCRIH 732 (796)
Q Consensus 688 ------~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 732 (796)
.+.....-.|...|++-.|.+-|.+. .+..++..|-.|..+|...
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 22223455677889999999998887 4567888999999988643
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.20 E-value=1.6e+02 Score=25.72 Aligned_cols=63 Identities=6% Similarity=0.056 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCC
Q 036290 232 NVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSS 295 (796)
Q Consensus 232 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 295 (796)
++.+.+.+.|++++..-. .++..+...++.-.|..+++.+.+.+...+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344556667776666543 556666666666778888888887776665544333344444444
No 430
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=36.17 E-value=6.9e+02 Score=28.31 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=24.9
Q ss_pred HHcCChhHHHHHHHHHHHcCC-CCC-----HHHHHHHHHH--HhccCchHHHHHHHH
Q 036290 525 VHQGHNHEAVTIFHSLVEAGE-KPD-----EYILGTILNS--CAAIGAYQRTKSIHP 573 (796)
Q Consensus 525 ~~~~~~~~A~~~~~~m~~~g~-~p~-----~~t~~~ll~~--~~~~~~~~~a~~~~~ 573 (796)
+-.+++..|...+..|.+..- .|+ ...+...+.+ +...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777754321 111 1222223332 223466677776665
No 431
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=35.57 E-value=5.9e+02 Score=27.40 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=36.5
Q ss_pred CceeHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhc
Q 036290 210 DVGCWNAMIGGYAHCGYGFEALNVVSSMLFE-GITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSE 276 (796)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (796)
|+..|..-|.-+-+.+.+.+.-.+|..|... +-.||...+.+.=. +-...+++.|+.++...++..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHHHhhcC
Confidence 6666777777666666677777777777653 33444444422111 112223666666666555543
No 432
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.56 E-value=4.1e+02 Score=25.50 Aligned_cols=118 Identities=9% Similarity=0.002 Sum_probs=68.7
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChh-HHHHHHHHHHhcCChHHH
Q 036290 559 CAAIGAYQRTKSIHPFVIKLGFNTEV-YVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVI-VYNTLIMAYAHHGLVSEA 635 (796)
Q Consensus 559 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~li~~~~~~g~~~~A 635 (796)
|.....++.|...+...+ -+.|++ .-|+.-+-++.+..+++.+..--...+.- ||.+ ..-.+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI--~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI--CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHH--hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 555667777777554444 445555 34455566777777777765544333332 4433 233445556677788999
Q ss_pred HHHHHHHHH----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 636 MEIFDKMKL----ANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 636 ~~~~~~m~~----~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
+..+++... ..+.|-......|..+=-..-...+...+.++..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 988888743 3334444556666655444445556666665554
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.27 E-value=99 Score=30.05 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=8.9
Q ss_pred HHHhccCCHHHHHHHHHHh
Q 036290 659 SACSHKGLVDKGCLLFKSM 677 (796)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~ 677 (796)
..|.+.|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444
No 434
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.11 E-value=3.9e+02 Score=26.59 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----------cCChHHH
Q 036290 332 ASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCR----------CGAVEMA 401 (796)
Q Consensus 332 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----------~g~~~~A 401 (796)
.++++.|...++.|.-+.|.-+.-.+.+.=.+..+..+|+.+...... +..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777777888888877776666666666777777777776643211 4444444432 3555555
Q ss_pred HHHHHhCCCCCh
Q 036290 402 HSVFDNVSYKNI 413 (796)
Q Consensus 402 ~~~~~~~~~~~~ 413 (796)
.++++.-+.-|+
T Consensus 338 mkLLQ~yp~tdi 349 (370)
T KOG4567|consen 338 MKLLQNYPTTDI 349 (370)
T ss_pred HHHHhcCCCCCH
Confidence 555555443333
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.85 E-value=45 Score=28.24 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=25.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036290 627 AHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSAC 661 (796)
Q Consensus 627 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 661 (796)
...|.-..|-.+|++|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4456667889999999999999974 77777654
No 436
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.80 E-value=6.8e+02 Score=27.89 Aligned_cols=16 Identities=6% Similarity=-0.205 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHccCC
Q 036290 735 KELGEWASEKLLLLLP 750 (796)
Q Consensus 735 ~~~A~~~~~~~~~~~p 750 (796)
...|.+.++++.+.+.
T Consensus 525 ~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 525 LHLAKRYYDQASEEDS 540 (552)
T ss_pred hHHHHHHHHHHHhcCc
Confidence 4556666666555444
No 437
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=34.11 E-value=1.7e+02 Score=28.77 Aligned_cols=56 Identities=18% Similarity=0.051 Sum_probs=32.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 655 VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 655 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+...+.|...|.+.+|.++.+... .+.|- ...+..|+..++..|+--.|.+-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~l---tldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRAL---TLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHh---hcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344456666677777777666665 33333 445556666666666655555555444
No 438
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=33.91 E-value=5.3e+02 Score=26.32 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHH
Q 036290 489 LIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRT 568 (796)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 568 (796)
+.+.+++.++-+.+..+-+.+..-......++..++-...-.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHhCCCCchhHHHHH-HHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHH
Q 036290 569 KSIHPFVIKLGFNTEVYVASAV-IDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIM 624 (796)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~ 624 (796)
...+..+.+.....+..+...+ .++.....+.+....+++.....+|...|+.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 439
>PRK02287 hypothetical protein; Provisional
Probab=33.25 E-value=2.8e+02 Score=24.97 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTV-YRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
..+..+++.++.-.|..++|.++++..+..++... -..++..|.+..+.++..++-++.++.
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~~ 169 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLGK 169 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 45677888888899999999999999887777644 457888999888888888777766543
No 440
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.17 E-value=5.8e+02 Score=26.61 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHhhcCC------CCcchHHHHHHHHHhCCCccHHHHHHHHHHHc
Q 036290 283 IVNALIDMYIKSSGMDYAFKVFERMAD------KDVISWNTLFGGFSENKNPGQTASLFHKFILS 341 (796)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~ 341 (796)
.+.-+-+.|..+|+++.|++.+.+..+ ..+..|-.+|..-.-.|+|.+......+....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 346677788899999999999988553 23445666777777788888877777766543
No 441
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.71 E-value=7.5e+02 Score=27.70 Aligned_cols=72 Identities=8% Similarity=-0.115 Sum_probs=26.5
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHH
Q 036290 300 AFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLA 373 (796)
Q Consensus 300 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 373 (796)
...++.+.+-++...-..++..|.+.|-.+.|.++.+.+-..-+ ...-|...|..+.+.++...+..+-..+
T Consensus 393 i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 393 IEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444434444455566666666666666666665533311 1234555555555555555544444333
No 442
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.13 E-value=55 Score=32.14 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290 686 SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRS-LLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
|+..|...+.-..+.|.+.+...++.+. ...| |...|-. -..-+..+++++.++.++.+.++.+|++|..|.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4444544444444445555555555544 2223 3344432 112245556677777777777777777666553
No 443
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.64 E-value=1.7e+02 Score=30.89 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhc
Q 036290 226 YGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSE 276 (796)
Q Consensus 226 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (796)
.+++-+++++.+.+.|- +| ....-|+.|.+.+++++|+..++.-.+.|
T Consensus 69 ~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIKAG 116 (480)
T ss_pred cHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhhcC
Confidence 45666667777766541 22 22234566777777777777777666543
No 444
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.48 E-value=1.9e+02 Score=32.44 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
+...++-.|....+++...++.+.++.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh
Confidence 344445555556666666666666665
No 445
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.41 E-value=4.7e+02 Score=28.53 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=26.9
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 036290 693 LVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGE 739 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 739 (796)
+...+.|.+++++|..+--+.+ +...+-.+-......|+.+.|.
T Consensus 500 fFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 500 FFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred HHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 4455667888888888877775 3333333333344556666654
No 446
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.27 E-value=1.7e+02 Score=26.38 Aligned_cols=46 Identities=4% Similarity=-0.079 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 036290 114 TLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMG 159 (796)
Q Consensus 114 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 159 (796)
.+++..+...+..-.|.++++.+.+.+..++..|....|..+...|
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444444444444455555555555554444444444444443333
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.95 E-value=3.1e+02 Score=24.98 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=22.0
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcC
Q 036290 659 SACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNG 701 (796)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 701 (796)
-.|.+.|.+++|.+++++.. + .|+......-+....+..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~---~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLF---S-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHhcCchHHHHHHHHHHh---c-CCCchhHHHHHHHHHHcc
Confidence 45677777777777777666 2 444444444444444433
No 448
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.87 E-value=1.5e+02 Score=23.00 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHH
Q 036290 64 TQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMG 129 (796)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 129 (796)
..++..+...| +.+....-..-+...+.+.|.++++-++.++..+|.+...++-..|...-|
T Consensus 19 ~~v~~~L~~~~----Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRG----VFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcC----CCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 45666666655 333333334444556778888888888888888888888888777655433
No 449
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=30.86 E-value=5e+02 Score=30.78 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=26.6
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHhcCCCChH--HHHHHHHhhhcCCCHHHHHHHHhhcCC
Q 036290 251 NALQGCSLVADFDIGRQIHGLIIRSEVECSIS--IVNALIDMYIKSSGMDYAFKVFERMAD 309 (796)
Q Consensus 251 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~ 309 (796)
..+...+..|+.+.++.++ +.|..++.. .-.+-+...+..|+.+-+.-+++.-.+
T Consensus 624 ~~L~~Aa~~g~~~~v~~Ll----~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd 680 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKELL----KQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD 680 (823)
T ss_pred hHHHHHHHhCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence 3455556666665544444 334333221 011223334556777666666654433
No 450
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.85 E-value=54 Score=32.81 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=52.1
Q ss_pred HhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 036290 595 AKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA-TFVSVMSACSHKGLVDKGC 671 (796)
Q Consensus 595 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~ 671 (796)
...|.+++|++.|...++. +....|.--...+.+.+++..|++=++...+ +.||.. -|-.--.+-...|+|++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 3456677777777555554 2444455555666677777777777766666 555442 2333333444566777777
Q ss_pred HHHHHhHhhcCCCCC
Q 036290 672 LLFKSMDSQYGMQPS 686 (796)
Q Consensus 672 ~~~~~~~~~~~~~p~ 686 (796)
..+....+. ++.+.
T Consensus 203 ~dl~~a~kl-d~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKL-DYDEA 216 (377)
T ss_pred HHHHHHHhc-cccHH
Confidence 777766633 44444
No 451
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.43 E-value=7.3e+02 Score=26.87 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=12.3
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcc
Q 036290 118 SAAIQNGEFDMGLKMYVDMKTNGFMPNEF 146 (796)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 146 (796)
...++.|+.+ +++.+.+.|..|+..
T Consensus 40 ~~A~~~~~~~----ivk~Ll~~g~~~~~~ 64 (480)
T PHA03100 40 YLAKEARNID----VVKILLDNGADINSS 64 (480)
T ss_pred hhhhccCCHH----HHHHHHHcCCCCCCc
Confidence 3334555544 344444556666543
No 452
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.97 E-value=6.8e+02 Score=27.95 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=16.1
Q ss_pred HHHHHHhccCchHHHHHHHHHHHH
Q 036290 554 TILNSCAAIGAYQRTKSIHPFVIK 577 (796)
Q Consensus 554 ~ll~~~~~~~~~~~a~~~~~~~~~ 577 (796)
+++.+|...|++-++.++++.+..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 566777777777776666666554
No 453
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.92 E-value=2.4e+02 Score=22.21 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=12.7
Q ss_pred HHHhccCCHHHHHHHHHHhHh
Q 036290 659 SACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~~~ 679 (796)
......|++++|...+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344556666666666666653
No 454
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.78 E-value=1e+02 Score=30.55 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVS 656 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 656 (796)
.-|+..|..-.+.||+++|+.++++..+.|+.--..+|..
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3467888888888999999999999988887755555543
No 455
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.78 E-value=7.4e+02 Score=26.74 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCCHHHH-HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh--cCChHHHHHHHHhC--CCCCCHHHH
Q 036290 648 QPSQATF-VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR--NGYLEDAKHVIEIM--PFQPSPTVY 722 (796)
Q Consensus 648 ~p~~~t~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~--~~~p~~~~~ 722 (796)
.|+..|+ +.++.-+.+.|-++.|...+..+... -+|+...|..++..-.. .-+..-+.++++.| .+..|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHH
Confidence 4555554 34455555666677777777776522 23345555555543221 12256666666666 233566677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHc-cCCCC
Q 036290 723 RSLLSGCRIHGNKELGEWASEKLLL-LLPKN 752 (796)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~ 752 (796)
...+.--..+|..+.+-.++.++.+ ++|+.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 7666666677777777777777766 44443
No 456
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.65 E-value=2.7e+02 Score=21.65 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcC
Q 036290 469 QIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGA 509 (796)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 509 (796)
++|+.....|+..|+.+|..+++...-.=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666677777777777777776665544444444444443
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.48 E-value=7.1e+02 Score=26.45 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=31.7
Q ss_pred HHHHHHHHHh---cCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcc
Q 036290 416 WNELLSGYCF---NCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCR 460 (796)
Q Consensus 416 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 460 (796)
+..++.++.+ .++.+.|+.++..|.+.|..|....-..++.++-.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4444555544 57899999999999999988886665555555433
No 458
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.37 E-value=3e+02 Score=25.96 Aligned_cols=27 Identities=11% Similarity=-0.124 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290 723 RSLLSGCRIHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 749 (796)
..+.....+.|+.++|.+.+.+++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334444677788888888888877643
No 459
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.36 E-value=6.5e+02 Score=25.61 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHh---cCChHHHH
Q 036290 633 SEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSR---NGYLEDAK 707 (796)
Q Consensus 633 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~A~ 707 (796)
+.-+.++++..+. .| +......++..+.+..+.+...+-|+++... .|+ ...|...++.... .-.+++..
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 4556677776664 44 4445566667777777777777777777743 343 5555555554433 22345555
Q ss_pred HHHHhC---------CC------CCC--HH---HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 708 HVIEIM---------PF------QPS--PT---VYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 708 ~~~~~~---------~~------~p~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
.+|.+. +. .++ .. ++..+..-+...|..+.|..+++-+++++=.
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 555443 11 011 11 2223333356789999999999999986543
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.93 E-value=1.8e+02 Score=28.19 Aligned_cols=59 Identities=19% Similarity=0.059 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIMP--------FQPSPTVYRSLLSGCRIHGNKELGEWASEKL 745 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 745 (796)
......+..-|.+.|++++|.++++.+. ..+...+...+..++...||.+....+.=++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344568888999999999999999881 1233455667777788889988877665443
No 461
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.21 E-value=3.8e+02 Score=30.92 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=101.2
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHH
Q 036290 555 ILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSE 634 (796)
Q Consensus 555 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 634 (796)
+|..+.+.|-.+-|+.+.+. .. .-......+|+++.|++.- .+-.+..+|..|...-...|+.+-
T Consensus 626 iIaYLqKkgypeiAL~FVkD---------~~---tRF~LaLe~gnle~ale~a---kkldd~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKD---------ER---TRFELALECGNLEVALEAA---KKLDDKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHHhcCCcceeeeeecC---------cc---hheeeehhcCCHHHHHHHH---HhcCcHHHHHHHHHHHHHhcchHH
Confidence 34444555555555554432 11 1233456788999888765 333577889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 635 AMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMP 714 (796)
Q Consensus 635 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (796)
|+..|++.+. |..|--.|.-.|+.++-.++...++ ++-|..+. ...+ .-.|+.++=.++++..+
T Consensus 691 aEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae----~r~D~~~~--~qna-lYl~dv~ervkIl~n~g 754 (1202)
T KOG0292|consen 691 AEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAE----IRNDATGQ--FQNA-LYLGDVKERVKILENGG 754 (1202)
T ss_pred HHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHH----hhhhhHHH--HHHH-HHhccHHHHHHHHHhcC
Confidence 9999988765 3334444666888887766665554 22332221 1111 22688899889998887
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290 715 FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 715 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 749 (796)
..|=. |. ....+|.-++|.++.++.-+..
T Consensus 755 ~~~la--yl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 755 QLPLA--YL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred cccHH--HH----HHhhcCcHHHHHHHHHhhcccc
Confidence 54422 21 1246788899999999887643
No 462
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.17 E-value=2e+02 Score=22.64 Aligned_cols=58 Identities=9% Similarity=0.175 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCC
Q 036290 64 TQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGE 125 (796)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 125 (796)
..++..+...|+ .+-...-...+.....+.+.++++.++.++..+|.....++-..+.
T Consensus 23 ~~v~~~L~~~gv----lt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQKDI----LTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHcCC----CCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 446666666552 2222333333455667788888888888888888888888765544
No 463
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.70 E-value=1.2e+03 Score=28.26 Aligned_cols=215 Identities=15% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036290 519 AMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG 598 (796)
Q Consensus 519 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 598 (796)
.+..+|...|...+|+..|.+... |+.-+......+....-+..++..+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~S-g~ge~~aL~~lv~~~~p~~~sv~dG------------------------------ 973 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALS-GFGEGNALRKLVYFLLPKRFSVADG------------------------------ 973 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhh-ccccHHHHHHHHHHhcCCCCchhcC------------------------------
Q ss_pred CHHHHHHHHhccCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHH
Q 036290 599 DIKGARMAFDQSFNSND--VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT----FVSVMSACSHKGLVDKGCL 672 (796)
Q Consensus 599 ~~~~A~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~~~A~~ 672 (796)
+....+. ..-|-..++.+-..+..+.+.++-....+. +.++..+ ++.+.+-....|.+-+|..
T Consensus 974 ----------~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ 1042 (1480)
T KOG4521|consen 974 ----------KTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYK 1042 (1480)
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHH
Q ss_pred HHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHH-------------HHHhC--CCCCCHHHHHHHHHHH--HhcCCh
Q 036290 673 LFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKH-------------VIEIM--PFQPSPTVYRSLLSGC--RIHGNK 735 (796)
Q Consensus 673 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-------------~~~~~--~~~p~~~~~~~l~~~~--~~~g~~ 735 (796)
.+-.-- ...-...+...++-.+..+|.++.-.+ +++.. ...-...-|..++.+| .+++-.
T Consensus 1043 ai~~np---dserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~R 1119 (1480)
T KOG4521|consen 1043 AILRNP---DSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFR 1119 (1480)
T ss_pred HHHcCC---cHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchh
Q ss_pred HHHHHHHHHHHccCCCCCcceEEecC-----hhhHHhCCCccCCCccEE
Q 036290 736 ELGEWASEKLLLLLPKNDAAHVLLSK-----RKRQREGNLLDHEGVCNV 779 (796)
Q Consensus 736 ~~A~~~~~~~~~~~p~~~~~~~~l~~-----~~~~~~~~~~~~~~~s~~ 779 (796)
+.|--+||.+.++..+....-..|-. .-.|.-..+- +|+..||
T Consensus 1120 kaatvMYEyamrl~se~~~~~~~Lekr~ncllaaLNcl~Lv-~p~yawi 1167 (1480)
T KOG4521|consen 1120 KAATVMYEYAMRLESETCMTPELLEKRRNCLLAALNCLSLV-EPDYAWI 1167 (1480)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHhhhHHHHHHHHHHhc-CCCccee
No 464
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=6.4e+02 Score=24.99 Aligned_cols=53 Identities=8% Similarity=-0.045 Sum_probs=29.3
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCCc-----hHHHHHHHHHHhcCChHHHHHHHH
Q 036290 659 SACSHKGLVDKGCLLFKSMDSQYGMQPSP-----DCYGCLVDMLSRNGYLEDAKHVIE 711 (796)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~ 711 (796)
+.|...++|-.|--+-+++.+++--.|+. ..|+.++........+-++.++++
T Consensus 179 rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~ 236 (439)
T COG5071 179 RLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYR 236 (439)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHH
Confidence 45556667777766666666554444542 335555555555555555653333
No 465
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.55 E-value=2.3e+02 Score=24.78 Aligned_cols=61 Identities=8% Similarity=-0.067 Sum_probs=29.8
Q ss_pred HHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCC
Q 036290 134 VDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGD 195 (796)
Q Consensus 134 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 195 (796)
+.+.+.|++++..= ..++..+...++.-.|.++++.+.+.++..+..+.-.-++.+...|=
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33444454443321 23444444444445566666666665555554443334455555553
No 466
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.35 E-value=4.6e+02 Score=24.92 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=58.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CChhHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290 580 FNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----NDVIVYN--TLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT 653 (796)
Q Consensus 580 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 653 (796)
+.+...-++.|+--|.-...+.+|-+.|.....- .|...++ .-|......|+.+.|++....+...-+.-|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 4445555666655555555555566666343322 2444433 456777899999999999888754434445433
Q ss_pred HHHHH--H--HHhccCCHHHHHHHHHHhH
Q 036290 654 FVSVM--S--ACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 654 ~~~ll--~--~~~~~g~~~~A~~~~~~~~ 678 (796)
+-.|. + -..+.|..++|+++.+.=.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 32222 1 2356788888888876544
No 467
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.14 E-value=1.1e+02 Score=21.92 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=14.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 036290 621 TLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 621 ~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
.+|.++...|++++|.++++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445666666666666666665543
No 468
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.94 E-value=7e+02 Score=25.21 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 036290 497 GQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVI 576 (796)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 576 (796)
++.+....++..+.+.+...|-..+.. +..+..|..-++.+..+ .....++-.+..+...
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce------------------~~~i~~D~~~l~~m~~~--neeki~eld~~iedae 95 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCE------------------SLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAE 95 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHh------------------hcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHH
Q ss_pred H-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------ChhHHHHHHHH-HHhcCChHHHHHHHHHHHHCCC
Q 036290 577 K-LGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN-------DVIVYNTLIMA-YAHHGLVSEAMEIFDKMKLANL 647 (796)
Q Consensus 577 ~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~ 647 (796)
+ .|-.--...+......||+.|+.+.|.+.+.....+. |+..+.+-+.. |..+.-..+-++..+.+.+.|-
T Consensus 96 enlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 96 ENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Q ss_pred CCCHHHHHHHHHH--HhccCCHHHHHHHHHHhHhhcC
Q 036290 648 QPSQATFVSVMSA--CSHKGLVDKGCLLFKSMDSQYG 682 (796)
Q Consensus 648 ~p~~~t~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~ 682 (796)
.-+...-.-.-.+ |....++.+|-.+|-+....+.
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
No 469
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.58 E-value=7.9e+02 Score=25.73 Aligned_cols=55 Identities=13% Similarity=0.008 Sum_probs=35.9
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhc--cCchHHHHHHHHHHHHh
Q 036290 523 ALVHQGHNHEAVTIFHSLVEAGEKPDEY--ILGTILNSCAA--IGAYQRTKSIHPFVIKL 578 (796)
Q Consensus 523 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 578 (796)
.+.+.+++..|.++|+++... ++++.. .+..+..+|.. .-+++.|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778889999999988876 555554 34444455443 44666777777766553
No 470
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.40 E-value=1.4e+02 Score=24.69 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 036290 115 LIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGA 160 (796)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 160 (796)
.++..+...+.+-.|.++++.+.+.+..++..|.-..|+.+...|-
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3455555555666677777777666655566665555555555443
No 471
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=24.65 E-value=8.6e+02 Score=25.81 Aligned_cols=110 Identities=8% Similarity=-0.035 Sum_probs=47.2
Q ss_pred CChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhc
Q 036290 178 KNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCS 257 (796)
Q Consensus 178 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 257 (796)
++..+......++++.+..+....+......++...-...+.++...+. ++...+....+ .+|...-...+.++.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG 172 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALG 172 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 3444555555666655555555555554444444433344444443331 12222333322 244444444555554
Q ss_pred cCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCC
Q 036290 258 LVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSG 296 (796)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 296 (796)
..++.+....+. .+ -..+|..+-..-+.+....|.
T Consensus 173 ~l~~~~a~~~L~-~a---l~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 173 ELPRRLSESTLR-LY---LRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred hhccccchHHHH-HH---HcCCCHHHHHHHHHHHHHcCC
Confidence 444432222211 11 112344444444555555554
No 472
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.18 E-value=1.8e+02 Score=17.74 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHH
Q 036290 632 VSEAMEIFDKMKLANLQPSQATFV 655 (796)
Q Consensus 632 ~~~A~~~~~~m~~~g~~p~~~t~~ 655 (796)
++.|..+|++... +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4555555555555 445555543
No 473
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=23.79 E-value=1.6e+02 Score=18.75 Aligned_cols=28 Identities=29% Similarity=0.039 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 721 VYRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
+|..|.......+++++|..-+++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5666777777888888888888888764
No 474
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.65 E-value=4.9e+02 Score=26.40 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHhHh
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLA---NLQPSQATFVS--VMSACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~--ll~~~~~~g~~~~A~~~~~~~~~ 679 (796)
...++....+.++.++|++.++++.+. --.|+.+.|.. ..+.+...|+..++.+.+++..+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334445555566777777777777653 12355555432 33455566777777777776664
No 475
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=23.47 E-value=7.7e+02 Score=24.81 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036290 569 KSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ 648 (796)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 648 (796)
.-+++-+..+++-++......-++.+.+.+..+-+..++...--..|.. +.+.. +-.+.+.-++++.+. +.
T Consensus 20 fPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p--~a~~e------kr~~Vla~lkeLe~e-v~ 90 (432)
T KOG2758|consen 20 FPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP--NALVE------KRTEVLAELKELEEE-VA 90 (432)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch--HHHHH------HHHHHHHHHHHHHHH-HH
Confidence 3444445555566566666666777777777777777773322221111 11110 112222223333321 12
Q ss_pred CCHHHH-H-HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCH---
Q 036290 649 PSQATF-V-SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM---PFQPSP--- 719 (796)
Q Consensus 649 p~~~t~-~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~--- 719 (796)
|=...+ + -++... ..-.+....++.+.+.+++.|+ ..+......-...+|++..|-.++--. ...||.
T Consensus 91 piv~~le~Pd~~~~~---~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~l 167 (432)
T KOG2758|consen 91 PIVKVLENPDLIAAL---RSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYL 167 (432)
T ss_pred HHHHHHcCHHHHHHH---HhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhH
Confidence 211110 0 111111 1223336778888888999999 677777888888999999998876443 334444
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 720 -TVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 720 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
.+|..+..--.. -+++.|.+-+-++.+
T Consensus 168 salwGKlASEIL~-qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 168 SALWGKLASEILT-QNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 345555444322 478888877766655
No 476
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.20 E-value=7.6e+02 Score=24.66 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 620 NTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 620 ~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
...+..+...|++..|++++.+..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555566666666666665554
No 477
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=23.12 E-value=3.3e+02 Score=20.77 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=6.0
Q ss_pred HccCChhHHHHHhh
Q 036290 191 AKLGDVAAAERVFY 204 (796)
Q Consensus 191 ~~~g~~~~A~~~~~ 204 (796)
+..|+.+-+.-+++
T Consensus 34 ~~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 34 AENGNLEIVKLLLE 47 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444444
No 478
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.91 E-value=7.8e+02 Score=24.68 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 036290 535 TIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIK 577 (796)
Q Consensus 535 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 577 (796)
++++.|...++.|.-..|.-+.-.+.+.=.+..+..+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555444444444455555555555444
No 479
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=22.63 E-value=4.5e+02 Score=23.45 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPT-VYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
..+..+++.++.-.|..++|.+++......++.. .-..++..|.+..+-.+..++-++.++
T Consensus 115 Lss~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~Y~~a~~s~eVveiq~~~l~ 176 (179)
T COG2042 115 LSSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYSNAEDSAEVVEIQEEYLE 176 (179)
T ss_pred hchHHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHHHHhccchHHHHHHHHHHHh
Confidence 5566778888888999999999999987777664 445788888888777676666665543
No 480
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=22.47 E-value=6.9e+02 Score=25.39 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC------CCChhHHHH--HHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 036290 587 ASAVIDAYAKCGDIKGARMAFDQSFN------SNDVIVYNT--LIMAYAHHGLVSEAMEIFDKMKL-----ANLQPSQAT 653 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 653 (796)
...++...-+.++.++|++++++... .|+.+.|.. ..+.+...|+..++.+++++... -|++|+..+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 33445556667899999999965443 256665554 45667789999999999999887 677775554
Q ss_pred -HHHHHHHH
Q 036290 654 -FVSVMSAC 661 (796)
Q Consensus 654 -~~~ll~~~ 661 (796)
|..+-.-|
T Consensus 158 ~fY~lssqY 166 (380)
T KOG2908|consen 158 SFYSLSSQY 166 (380)
T ss_pred hHHHHHHHH
Confidence 55444333
No 481
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.34 E-value=8.1e+02 Score=24.67 Aligned_cols=79 Identities=14% Similarity=-0.013 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036290 566 QRTKSIHPFVIKLGF----NTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDK 641 (796)
Q Consensus 566 ~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 641 (796)
+.+.+.++.....+. ..++.....+.....+.|+.++-..+++.....++......++.+++...+.+...++++.
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 345555555544211 2333444444444444454444333332222223444444555555555555555555555
Q ss_pred HHH
Q 036290 642 MKL 644 (796)
Q Consensus 642 m~~ 644 (796)
...
T Consensus 227 ~l~ 229 (324)
T PF11838_consen 227 LLS 229 (324)
T ss_dssp HHC
T ss_pred HcC
Confidence 544
No 482
>PRK09462 fur ferric uptake regulator; Provisional
Probab=22.29 E-value=3.5e+02 Score=23.61 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=29.9
Q ss_pred HHHCCCCCCcccHHHHHHHHhcc-CChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCC
Q 036290 136 MKTNGFMPNEFAVGSVMKVCVSM-GASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGD 195 (796)
Q Consensus 136 m~~~~~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 195 (796)
+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..+.-.-+..+...|-
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344455443332 2333444433 3455666777777666655555544444455555553
No 483
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.79 E-value=5e+02 Score=21.99 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290 634 EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKS 676 (796)
Q Consensus 634 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~ 676 (796)
.+.++|+.|...|+-- -+.-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8888999998887765 444577777778888999999998865
No 484
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.68 E-value=6.7e+02 Score=27.44 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC--Chh---hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 036290 386 SSLIYMFCRCGAVEMAHSVFDNVSYK--NIT---TWNELLSGYCFNCCDADVLKTFCNIWE 441 (796)
Q Consensus 386 ~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~ 441 (796)
..++.-|.+.+++++|..++..|.=. ... +.+.+++.+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35778899999999999999998732 222 333444455555444444444444443
No 485
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=21.54 E-value=7e+02 Score=29.55 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=55.2
Q ss_pred HHhhhcCCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChH
Q 036290 288 IDMYIKSSGMDYAFKVFERMADK---DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLD 364 (796)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 364 (796)
+...+..|..+-+.-+++.-... |..-++.+..+ +..|+.+-+.-++ ..+-..+..+-...+...+..|+.+
T Consensus 562 Lh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A-~~~g~~~iv~~L~----~~~~~~~~~~~~~~L~~Aa~~g~~~ 636 (823)
T PLN03192 562 LHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA-ISAKHHKIFRILY----HFASISDPHAAGDLLCTAAKRNDLT 636 (823)
T ss_pred HHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH-HHhCCHHHHHHHH----hcCcccCcccCchHHHHHHHhCCHH
Confidence 34444556655555555432222 22333333333 3344433222222 2332333333445566677777776
Q ss_pred HHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCChHHHHHHHHhCCC
Q 036290 365 LGLQLQCLALHCGFLDEENVT--SSLIYMFCRCGAVEMAHSVFDNVSY 410 (796)
Q Consensus 365 ~a~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~g~~~~A~~~~~~~~~ 410 (796)
.+..+ .+.|..++.... ..-+...+..|+.+-+.-+++.-.+
T Consensus 637 ~v~~L----l~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd 680 (823)
T PLN03192 637 AMKEL----LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD 680 (823)
T ss_pred HHHHH----HHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence 55544 345655543221 2334455667888777777765543
No 486
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.43 E-value=2.1e+02 Score=28.73 Aligned_cols=101 Identities=8% Similarity=-0.089 Sum_probs=54.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHH
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGC 729 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~ 729 (796)
|.-=.+-|.+..++..|...|.+-.+..--.|| ...|+.-..+-.--|++..|+.-..+. ..+|+. ..|..=..++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333344555666666677666665544333444 444555555555556666666555544 455543 3333334445
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCc
Q 036290 730 RIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 730 ~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
....++.+|.+..+..++.+-+.-.
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 5556666677766666665554433
No 487
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=21.38 E-value=3.8e+02 Score=29.76 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCchHHH--HH-HHHHHHHhCCCCchhHHHHHHHH
Q 036290 519 AMMSALVHQGHNHEAVTIFHSLVEA--GEKPDEYILGTILNSCAAIGAYQRT--KS-IHPFVIKLGFNTEVYVASAVIDA 593 (796)
Q Consensus 519 ~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a--~~-~~~~~~~~~~~~~~~~~~~li~~ 593 (796)
.++.+|...|++-.+.++++.+... |-+.=...|+..|+...+.|+++.. .. .-+.+.+..+.-|..+|..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7899999999999999999998654 3344456788889999998876532 11 12223334466677788777766
Q ss_pred HHh
Q 036290 594 YAK 596 (796)
Q Consensus 594 ~~~ 596 (796)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 544
No 488
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.13 E-value=2.1e+02 Score=30.04 Aligned_cols=62 Identities=8% Similarity=0.020 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhc-----CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQY-----GMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
.+...|++..+-.||+..|++.++.+.-.. .+.+- +.++-.++-+|.-.+++.+|.+.|...
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888999999999988764211 11121 566777888899999999999999876
No 489
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=21.05 E-value=67 Score=31.48 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 729 CRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 729 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
..+.|+.++|..+|+.++.++|+++.+..-+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~ 158 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQ 158 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhH
Confidence 467899999999999999999999988665554
No 490
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.99 E-value=2.1e+02 Score=23.62 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=28.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCC
Q 036290 217 MIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVAD 261 (796)
Q Consensus 217 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 261 (796)
++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 445555556666777777777777666666666555555544443
No 491
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=20.97 E-value=9.6e+02 Score=25.00 Aligned_cols=86 Identities=14% Similarity=0.221 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHhccCCHHHHHHHHHHhHhhcCCCCC--
Q 036290 621 TLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSV------------MSACSHKGLVDKGCLLFKSMDSQYGMQPS-- 686 (796)
Q Consensus 621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-- 686 (796)
.|..-+...|+.++|..++.+..- .||.++ ++-|...++|-.|.-+-+++..++=-.|+
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~V-------ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~ 208 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQV-------ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQ 208 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcch-------hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHH
Confidence 344455566677776666655431 222221 34566667777777666666555444444
Q ss_pred ---chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 687 ---PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 687 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
...|..++....+.+.+-.+.+.++..
T Consensus 209 ~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 209 ELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 234666777776777777777777665
No 492
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.65 E-value=1.4e+02 Score=24.89 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 036290 114 TLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMG 159 (796)
Q Consensus 114 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 159 (796)
..++..+...+.+-.|.++++.|.+.+...+..|.-..|..+...|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3455555555556666666666666655555555444444443333
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.27 E-value=1.6e+02 Score=21.13 Aligned_cols=46 Identities=15% Similarity=0.020 Sum_probs=21.5
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHH-----ccCChhHHHHH
Q 036290 56 NLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYS-----KCGYFGWGLRV 101 (796)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~ 101 (796)
+.+++-++.++++.+-+....+....+..||.... +.|+...|.++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 44555566666665554322234445555554322 44555555444
Done!