Query 036290
Match_columns 796
No_of_seqs 688 out of 4206
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 19:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-38 6.5E-43 357.6 36.2 495 190-761 63-592 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.8E-38 3.3E-42 351.8 37.9 347 88-441 62-435 (597)
3 4g26_A Pentatricopeptide repea 99.9 1.7E-26 5.8E-31 247.8 21.9 214 330-596 8-222 (501)
4 4g26_A Pentatricopeptide repea 99.9 3.2E-26 1.1E-30 245.7 22.9 210 431-662 8-221 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 7.9E-24 2.7E-28 224.0 34.9 360 393-760 10-380 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.5E-22 5.2E-27 214.2 40.1 370 319-734 6-388 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.1E-21 7.3E-26 213.9 28.6 439 315-761 9-491 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 3E-19 1E-23 193.0 32.0 345 381-753 25-415 (450)
9 2gw1_A Mitochondrial precursor 99.9 5.3E-19 1.8E-23 194.7 34.0 439 213-718 8-481 (514)
10 1xi4_A Clathrin heavy chain; a 99.9 7.2E-16 2.5E-20 174.3 58.8 523 177-756 722-1317(1630)
11 2y4t_A DNAJ homolog subfamily 99.9 9.8E-20 3.3E-24 196.8 27.3 309 412-761 25-371 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.8E-19 1.3E-23 197.1 31.9 431 313-759 26-502 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 6.7E-15 2.3E-19 166.6 61.8 522 165-748 968-1560(1630)
14 3fp2_A TPR repeat-containing p 99.8 1.6E-17 5.4E-22 184.0 32.2 425 213-713 27-488 (537)
15 3ieg_A DNAJ homolog subfamily 99.8 8.2E-17 2.8E-21 167.9 30.1 308 413-761 3-348 (359)
16 1b89_A Protein (clathrin heavy 99.7 1.8E-16 6.1E-21 161.3 24.1 376 292-743 14-412 (449)
17 3ieg_A DNAJ homolog subfamily 99.7 1.8E-15 6.1E-20 157.7 31.7 322 381-730 2-351 (359)
18 3hym_B Cell division cycle pro 99.7 2.1E-16 7.1E-21 162.7 24.1 278 480-761 19-312 (330)
19 1b89_A Protein (clathrin heavy 99.7 2.6E-15 9E-20 152.8 30.0 223 191-442 14-236 (449)
20 3hym_B Cell division cycle pro 99.7 2.6E-15 8.9E-20 154.4 28.7 287 412-736 21-322 (330)
21 2xm6_A Protein corresponding t 99.7 5.8E-14 2E-18 152.8 37.3 348 395-761 56-448 (490)
22 3mkr_A Coatomer subunit epsilo 99.7 2.3E-15 7.9E-20 150.6 22.9 255 492-757 8-273 (291)
23 2ooe_A Cleavage stimulation fa 99.7 1.1E-13 3.6E-18 152.4 35.9 408 311-751 12-495 (530)
24 1fch_A Peroxisomal targeting s 99.7 2E-15 6.8E-20 158.0 18.2 295 393-747 36-358 (368)
25 3spa_A Mtrpol, DNA-directed RN 99.6 6.6E-17 2.3E-21 177.2 6.2 147 79-225 127-286 (1134)
26 1fch_A Peroxisomal targeting s 99.6 1.4E-15 4.9E-20 159.1 15.6 259 496-761 38-338 (368)
27 2xm6_A Protein corresponding t 99.6 1.9E-12 6.5E-17 140.8 39.8 176 496-680 236-432 (490)
28 2ooe_A Cleavage stimulation fa 99.6 7.6E-13 2.6E-17 145.5 35.8 409 278-713 10-489 (530)
29 4g1t_A Interferon-induced prot 99.6 1.7E-13 5.8E-18 148.7 29.9 369 348-760 52-471 (472)
30 4eqf_A PEX5-related protein; a 99.6 3.9E-15 1.3E-19 155.6 16.1 255 486-746 68-354 (365)
31 3cv0_A Peroxisome targeting si 99.6 3.9E-15 1.3E-19 152.8 14.6 257 490-753 28-320 (327)
32 3spa_A Mtrpol, DNA-directed RN 99.6 2.9E-16 9.8E-21 172.2 6.0 130 280-409 126-263 (1134)
33 4eqf_A PEX5-related protein; a 99.6 1.7E-14 5.8E-19 150.7 19.2 265 412-713 64-353 (365)
34 3mkr_A Coatomer subunit epsilo 99.6 1.3E-12 4.5E-17 130.5 28.8 250 390-650 7-267 (291)
35 3cv0_A Peroxisome targeting si 99.6 1.5E-13 5E-18 141.0 22.3 260 413-713 21-312 (327)
36 3uq3_A Heat shock protein STI1 99.5 9.8E-14 3.4E-18 136.8 16.1 231 514-758 5-252 (258)
37 3u4t_A TPR repeat-containing p 99.5 3.9E-13 1.3E-17 133.8 17.1 237 517-759 6-261 (272)
38 4g1t_A Interferon-induced prot 99.5 1.3E-11 4.5E-16 133.8 29.1 378 311-722 50-469 (472)
39 1ouv_A Conserved hypothetical 99.4 1.9E-11 6.6E-16 121.4 25.3 230 513-755 5-258 (273)
40 2ho1_A Type 4 fimbrial biogene 99.4 2.9E-12 1E-16 125.7 18.6 208 514-758 37-248 (252)
41 2vq2_A PILW, putative fimbrial 99.4 3.5E-12 1.2E-16 122.6 17.8 207 514-759 8-222 (225)
42 2h6f_A Protein farnesyltransfe 99.4 3.3E-12 1.1E-16 132.1 17.8 242 513-761 96-361 (382)
43 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.2E-12 1.8E-16 125.7 18.8 224 527-756 18-252 (275)
44 3e4b_A ALGK; tetratricopeptide 99.4 1.2E-11 4E-16 132.3 22.0 341 399-759 55-432 (452)
45 2q7f_A YRRB protein; TPR, prot 99.4 1.4E-12 4.7E-17 127.2 13.5 201 554-760 28-234 (243)
46 2pl2_A Hypothetical conserved 99.4 5.8E-12 2E-16 120.1 16.8 193 514-745 5-211 (217)
47 2pl2_A Hypothetical conserved 99.4 1E-11 3.5E-16 118.4 17.7 195 480-713 2-211 (217)
48 2ho1_A Type 4 fimbrial biogene 99.4 7.5E-11 2.6E-15 115.5 23.8 194 483-713 37-235 (252)
49 3uq3_A Heat shock protein STI1 99.4 3E-11 1E-15 118.8 20.3 207 458-713 15-233 (258)
50 1xnf_A Lipoprotein NLPI; TPR, 99.4 1E-11 3.6E-16 123.5 17.1 219 515-742 44-269 (275)
51 3u4t_A TPR repeat-containing p 99.4 3.7E-11 1.3E-15 119.3 21.0 239 486-727 6-263 (272)
52 3e4b_A ALGK; tetratricopeptide 99.3 1E-10 3.4E-15 125.1 24.3 147 291-443 45-209 (452)
53 3vtx_A MAMA; tetratricopeptide 99.3 8.9E-12 3E-16 115.5 13.9 170 583-757 4-179 (184)
54 2vq2_A PILW, putative fimbrial 99.3 1.4E-10 4.8E-15 111.2 21.3 203 480-719 5-215 (225)
55 1ouv_A Conserved hypothetical 99.3 4.2E-10 1.4E-14 111.7 24.5 218 483-713 6-248 (273)
56 3sf4_A G-protein-signaling mod 99.3 2.6E-11 8.9E-16 128.4 16.5 295 413-735 9-363 (406)
57 2ond_A Cleavage stimulation fa 99.3 4.8E-10 1.7E-14 113.4 24.8 219 531-755 33-277 (308)
58 4e6h_A MRNA 3'-END-processing 99.3 2.4E-08 8.2E-13 110.2 38.7 418 310-757 64-579 (679)
59 2q7f_A YRRB protein; TPR, prot 99.3 5.4E-11 1.9E-15 115.8 15.1 203 515-724 24-232 (243)
60 2h6f_A Protein farnesyltransfe 99.3 2.2E-10 7.7E-15 118.3 20.3 237 486-730 100-364 (382)
61 4a1s_A PINS, partner of inscut 99.3 3.6E-11 1.2E-15 127.6 14.7 271 449-751 49-375 (411)
62 3ro2_A PINS homolog, G-protein 99.2 1.9E-10 6.4E-15 118.0 18.7 135 617-751 184-335 (338)
63 3as5_A MAMA; tetratricopeptide 99.2 2.8E-10 9.4E-15 105.3 16.9 172 584-759 8-184 (186)
64 4a1s_A PINS, partner of inscut 99.2 1.3E-10 4.4E-15 123.3 15.8 267 415-713 50-369 (411)
65 3ulq_A Response regulator aspa 99.2 4.3E-10 1.5E-14 117.9 19.5 231 520-750 109-370 (383)
66 3nf1_A KLC 1, kinesin light ch 99.2 3.1E-11 1.1E-15 122.5 10.1 237 515-751 28-310 (311)
67 3sf4_A G-protein-signaling mod 99.2 1.7E-10 5.9E-15 122.0 16.1 263 489-751 15-339 (406)
68 4e6h_A MRNA 3'-END-processing 99.2 2E-07 6.7E-12 103.0 39.8 230 466-699 327-586 (679)
69 4abn_A Tetratricopeptide repea 99.2 8.5E-11 2.9E-15 126.5 12.0 211 528-745 82-318 (474)
70 4abn_A Tetratricopeptide repea 99.2 5.5E-10 1.9E-14 120.1 17.2 207 499-713 84-318 (474)
71 3vtx_A MAMA; tetratricopeptide 99.1 1.1E-09 3.6E-14 101.3 16.0 160 513-713 4-167 (184)
72 4i17_A Hypothetical protein; T 99.1 5E-10 1.7E-14 107.7 13.7 202 547-760 5-221 (228)
73 2ond_A Cleavage stimulation fa 99.1 1.1E-09 3.6E-14 110.8 16.4 179 531-713 81-267 (308)
74 3ro2_A PINS homolog, G-protein 99.1 8.3E-10 2.8E-14 113.2 14.5 129 585-713 184-329 (338)
75 4gyw_A UDP-N-acetylglucosamine 99.1 4.7E-10 1.6E-14 125.5 12.7 164 583-751 8-177 (723)
76 3q15_A PSP28, response regulat 99.1 2.6E-08 8.9E-13 104.0 25.0 230 520-749 107-366 (378)
77 3ulq_A Response regulator aspa 99.1 5.2E-09 1.8E-13 109.6 19.7 221 489-713 109-365 (383)
78 3mv2_B Coatomer subunit epsilo 99.0 1.7E-08 5.8E-13 98.5 19.0 242 493-756 23-290 (310)
79 3nf1_A KLC 1, kinesin light ch 99.0 1.7E-09 5.8E-14 109.5 11.9 160 551-713 113-304 (311)
80 1hz4_A MALT regulatory protein 98.9 1.4E-07 4.8E-12 98.2 23.8 91 518-608 97-198 (373)
81 2fo7_A Synthetic consensus TPR 98.9 1.9E-08 6.5E-13 86.9 14.2 130 618-752 3-136 (136)
82 1qqe_A Vesicular transport pro 98.9 9.2E-08 3.2E-12 95.5 21.0 213 499-754 33-275 (292)
83 3edt_B KLC 2, kinesin light ch 98.9 1.5E-08 5E-13 100.8 14.9 200 550-749 44-282 (283)
84 4gyw_A UDP-N-acetylglucosamine 98.9 1.5E-08 5E-13 113.4 16.0 157 551-713 11-171 (723)
85 4i17_A Hypothetical protein; T 98.9 4.1E-08 1.4E-12 94.2 17.0 197 512-720 5-214 (228)
86 3q15_A PSP28, response regulat 98.9 1.1E-07 3.8E-12 99.1 20.7 219 491-713 109-362 (378)
87 3urz_A Uncharacterized protein 98.9 1.5E-08 5.3E-13 95.4 12.7 127 621-753 59-191 (208)
88 4ga2_A E3 SUMO-protein ligase 98.8 1E-09 3.6E-14 97.1 3.4 129 626-759 7-140 (150)
89 3qky_A Outer membrane assembly 98.8 3.9E-08 1.3E-12 96.5 15.0 169 583-756 14-232 (261)
90 3as5_A MAMA; tetratricopeptide 98.8 2.2E-07 7.5E-12 85.4 18.9 157 485-679 10-172 (186)
91 1hz4_A MALT regulatory protein 98.8 1.2E-06 4E-11 91.2 26.1 265 486-753 17-327 (373)
92 1qqe_A Vesicular transport pro 98.8 2.2E-08 7.6E-13 100.1 11.4 162 592-755 45-235 (292)
93 2vsy_A XCC0866; transferase, g 98.8 3.5E-08 1.2E-12 109.2 13.8 159 597-760 2-169 (568)
94 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.4E-07 4.7E-12 90.1 15.0 89 664-755 109-220 (225)
95 4ga2_A E3 SUMO-protein ligase 98.7 2.1E-08 7.2E-13 88.7 7.9 139 591-734 4-149 (150)
96 2pzi_A Probable serine/threoni 98.7 1.4E-07 4.7E-12 106.2 16.0 142 584-731 433-580 (681)
97 3mv2_B Coatomer subunit epsilo 98.7 1.2E-06 4.3E-11 85.3 20.0 182 533-719 85-286 (310)
98 2r5s_A Uncharacterized protein 98.7 1.2E-07 4.2E-12 86.4 11.8 156 587-747 9-172 (176)
99 4gco_A Protein STI-1; structur 98.7 3E-08 1E-12 84.5 7.0 110 647-759 8-121 (126)
100 3edt_B KLC 2, kinesin light ch 98.7 8.8E-07 3E-11 87.7 18.9 167 516-713 87-278 (283)
101 2pzi_A Probable serine/threoni 98.6 7E-07 2.4E-11 100.5 19.0 182 525-714 402-603 (681)
102 3urz_A Uncharacterized protein 98.6 2.9E-07 1E-11 86.5 13.0 186 517-727 7-198 (208)
103 3rjv_A Putative SEL1 repeat pr 98.6 1.5E-06 5.1E-11 81.9 17.8 173 568-750 5-199 (212)
104 2uy1_A Cleavage stimulation fa 98.6 2.1E-05 7.3E-10 84.2 28.8 370 324-747 6-412 (493)
105 3dra_A Protein farnesyltransfe 98.6 7.9E-06 2.7E-10 80.7 22.6 221 528-756 47-296 (306)
106 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5.9E-07 2E-11 84.8 14.0 130 586-718 8-153 (213)
107 3qou_A Protein YBBN; thioredox 98.6 2.3E-06 7.8E-11 85.0 18.2 154 552-711 120-279 (287)
108 3qou_A Protein YBBN; thioredox 98.6 3.5E-07 1.2E-11 91.0 12.2 162 581-747 114-283 (287)
109 3qky_A Outer membrane assembly 98.5 1.4E-06 4.7E-11 85.4 16.1 59 484-542 16-80 (261)
110 3gyz_A Chaperone protein IPGC; 98.5 1.3E-07 4.3E-12 83.1 7.5 98 652-752 37-137 (151)
111 2fo7_A Synthetic consensus TPR 98.5 1.7E-06 5.9E-11 74.3 14.7 127 516-678 3-130 (136)
112 2r5s_A Uncharacterized protein 98.5 1.5E-06 5.1E-11 79.1 14.1 151 556-712 13-169 (176)
113 2vgx_A Chaperone SYCD; alterna 98.5 1.5E-07 5E-12 82.9 6.9 114 639-757 10-127 (148)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.5 3.2E-06 1.1E-10 79.7 16.8 130 618-754 8-156 (213)
115 2ifu_A Gamma-SNAP; membrane fu 98.5 2.5E-06 8.7E-11 85.7 16.9 154 557-713 44-221 (307)
116 3u3w_A Transcriptional activat 98.5 1.5E-05 5.2E-10 79.4 22.2 159 590-748 81-266 (293)
117 4f3v_A ESX-1 secretion system 98.5 6.4E-07 2.2E-11 86.2 10.6 138 619-761 105-249 (282)
118 2ifu_A Gamma-SNAP; membrane fu 98.5 5.6E-06 1.9E-10 83.2 17.9 185 521-708 43-253 (307)
119 2qfc_A PLCR protein; TPR, HTH, 98.4 6E-06 2E-10 82.4 17.5 163 586-748 77-266 (293)
120 2uy1_A Cleavage stimulation fa 98.4 0.00091 3.1E-08 71.5 35.2 46 431-477 197-242 (493)
121 3rjv_A Putative SEL1 repeat pr 98.4 3E-05 1E-09 72.9 20.8 159 513-680 17-197 (212)
122 3gyz_A Chaperone protein IPGC; 98.4 7E-07 2.4E-11 78.3 8.3 101 615-720 35-138 (151)
123 2e2e_A Formate-dependent nitri 98.4 9.5E-07 3.2E-11 80.6 9.1 129 627-760 21-156 (177)
124 2yhc_A BAMD, UPF0169 lipoprote 98.4 2.1E-05 7.3E-10 74.7 18.7 54 657-713 153-210 (225)
125 2xcb_A PCRH, regulatory protei 98.3 6.3E-07 2.2E-11 78.2 6.9 102 652-756 19-123 (142)
126 2vsy_A XCC0866; transferase, g 98.3 3.4E-06 1.2E-10 93.2 14.3 150 527-680 2-157 (568)
127 4gco_A Protein STI-1; structur 98.3 2.8E-06 9.5E-11 72.1 10.4 104 617-725 14-121 (126)
128 3q7a_A Farnesyltransferase alp 98.3 0.00016 5.5E-09 72.0 24.0 223 524-754 64-338 (349)
129 3gw4_A Uncharacterized protein 98.3 5.3E-06 1.8E-10 77.4 12.6 134 615-748 25-176 (203)
130 1a17_A Serine/threonine protei 98.3 6.3E-06 2.1E-10 73.9 12.0 127 617-748 14-146 (166)
131 2kck_A TPR repeat; tetratricop 98.3 5.5E-06 1.9E-10 68.3 10.4 101 650-753 5-111 (112)
132 3dra_A Protein farnesyltransfe 98.2 0.00052 1.8E-08 67.6 25.8 166 429-599 49-235 (306)
133 1na0_A Designed protein CTPR3; 98.2 2.1E-06 7.3E-11 72.5 7.6 101 653-756 11-114 (125)
134 3gw4_A Uncharacterized protein 98.2 2.6E-05 8.8E-10 72.6 15.8 129 585-713 27-173 (203)
135 3sz7_A HSC70 cochaperone (SGT) 98.2 3.3E-06 1.1E-10 75.7 8.9 98 654-754 14-114 (164)
136 2vgx_A Chaperone SYCD; alterna 98.2 5.7E-06 1.9E-10 72.6 10.1 94 615-713 20-115 (148)
137 1hxi_A PEX5, peroxisome target 98.2 2.7E-06 9.4E-11 71.6 7.6 98 654-754 20-120 (121)
138 2lni_A Stress-induced-phosphop 98.2 3.1E-06 1.1E-10 72.5 7.9 114 615-733 15-132 (133)
139 1elw_A TPR1-domain of HOP; HOP 98.2 3.4E-06 1.2E-10 70.4 7.9 102 653-757 6-110 (118)
140 2c2l_A CHIP, carboxy terminus 98.2 1.4E-05 4.8E-10 78.9 13.3 191 550-750 5-201 (281)
141 3upv_A Heat shock protein STI1 98.2 2.1E-06 7.3E-11 72.9 6.3 93 654-749 7-102 (126)
142 1p5q_A FKBP52, FK506-binding p 98.2 8.6E-06 2.9E-10 82.8 11.8 129 615-748 146-294 (336)
143 3u3w_A Transcriptional activat 98.2 0.00022 7.7E-09 70.8 21.8 166 520-713 81-263 (293)
144 2dba_A Smooth muscle cell asso 98.2 8.6E-06 3E-10 71.3 10.0 104 651-757 28-137 (148)
145 2lni_A Stress-induced-phosphop 98.1 1.5E-05 5.1E-10 68.2 11.2 106 650-758 15-123 (133)
146 2vyi_A SGTA protein; chaperone 98.1 1.7E-05 5.9E-10 67.4 11.6 115 616-735 12-130 (131)
147 4gcn_A Protein STI-1; structur 98.1 8.9E-06 3.1E-10 69.1 9.5 91 618-713 10-109 (127)
148 4gcn_A Protein STI-1; structur 98.1 3.6E-06 1.2E-10 71.6 6.9 97 652-751 9-115 (127)
149 1na0_A Designed protein CTPR3; 98.1 2.7E-05 9.3E-10 65.5 12.4 111 616-731 9-123 (125)
150 2c2l_A CHIP, carboxy terminus 98.1 3E-06 1E-10 83.7 7.2 171 583-761 3-177 (281)
151 4f3v_A ESX-1 secretion system 98.1 8.5E-05 2.9E-09 71.4 16.8 138 586-725 104-247 (282)
152 1a17_A Serine/threonine protei 98.1 1.9E-05 6.3E-10 70.7 11.6 124 585-713 14-143 (166)
153 2qfc_A PLCR protein; TPR, HTH, 98.1 6.3E-05 2.2E-09 74.8 16.5 124 590-713 121-263 (293)
154 2vyi_A SGTA protein; chaperone 98.1 6.5E-06 2.2E-10 70.1 7.6 108 650-760 11-121 (131)
155 3upv_A Heat shock protein STI1 98.1 1.9E-05 6.6E-10 66.9 10.3 92 617-713 5-98 (126)
156 3dss_A Geranylgeranyl transfer 98.1 0.00015 5.2E-09 71.9 17.9 188 565-759 90-315 (331)
157 3q49_B STIP1 homology and U bo 98.1 1.2E-05 4.1E-10 69.3 8.9 99 650-751 8-109 (137)
158 2hr2_A Hypothetical protein; a 98.1 7.1E-06 2.4E-10 71.0 7.0 73 689-761 59-144 (159)
159 2if4_A ATFKBP42; FKBP-like, al 98.1 6.8E-06 2.3E-10 83.6 8.2 131 619-754 182-334 (338)
160 2fbn_A 70 kDa peptidylprolyl i 98.0 4.8E-06 1.6E-10 77.5 6.3 148 593-746 13-184 (198)
161 3sz7_A HSC70 cochaperone (SGT) 98.0 3.7E-05 1.3E-09 68.7 11.6 94 615-713 10-105 (164)
162 2xcb_A PCRH, regulatory protei 98.0 3.6E-05 1.2E-09 66.8 11.1 94 615-713 17-112 (142)
163 2e2e_A Formate-dependent nitri 98.0 2.2E-05 7.4E-10 71.4 9.6 91 618-713 46-141 (177)
164 2xev_A YBGF; tetratricopeptide 98.0 2E-05 6.7E-10 67.1 8.8 95 658-755 9-112 (129)
165 3ro3_A PINS homolog, G-protein 98.0 2.6E-05 8.8E-10 69.3 9.7 133 618-750 11-160 (164)
166 1p5q_A FKBP52, FK506-binding p 98.0 2.2E-05 7.5E-10 79.8 9.8 93 616-713 196-291 (336)
167 1elw_A TPR1-domain of HOP; HOP 97.9 9E-05 3.1E-09 61.4 12.0 105 616-725 4-112 (118)
168 3q49_B STIP1 homology and U bo 97.9 9.9E-05 3.4E-09 63.4 12.3 95 614-713 7-103 (137)
169 1wao_1 Serine/threonine protei 97.9 1.4E-05 4.8E-10 85.4 7.8 129 625-758 15-160 (477)
170 2fbn_A 70 kDa peptidylprolyl i 97.9 3.7E-06 1.2E-10 78.3 2.8 136 624-761 12-164 (198)
171 1elr_A TPR2A-domain of HOP; HO 97.9 2.8E-05 9.7E-10 66.1 8.2 107 618-726 6-119 (131)
172 1hxi_A PEX5, peroxisome target 97.9 3.4E-05 1.1E-09 64.8 8.3 96 618-718 19-117 (121)
173 3k9i_A BH0479 protein; putativ 97.9 1.1E-05 3.7E-10 67.5 4.5 88 664-754 3-96 (117)
174 2dba_A Smooth muscle cell asso 97.9 0.00016 5.6E-09 62.9 12.5 108 615-727 27-141 (148)
175 3rkv_A Putative peptidylprolyl 97.8 3.1E-05 1.1E-09 69.1 7.7 74 687-760 63-139 (162)
176 2kck_A TPR repeat; tetratricop 97.8 7.3E-05 2.5E-09 61.3 9.4 94 615-713 5-103 (112)
177 3q7a_A Farnesyltransferase alp 97.8 0.019 6.5E-07 57.1 27.8 171 424-599 65-257 (349)
178 1elr_A TPR2A-domain of HOP; HO 97.8 0.00012 4E-09 62.1 10.1 105 651-759 4-118 (131)
179 4b4t_Q 26S proteasome regulato 97.8 0.00071 2.4E-08 71.6 18.5 22 522-543 12-33 (434)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 9.7E-05 3.3E-09 78.6 11.0 125 617-746 269-413 (457)
181 1wao_1 Serine/threonine protei 97.7 8.5E-05 2.9E-09 79.4 9.7 113 594-711 16-134 (477)
182 2xev_A YBGF; tetratricopeptide 97.7 0.00022 7.4E-09 60.4 10.2 93 621-718 7-108 (129)
183 2if4_A ATFKBP42; FKBP-like, al 97.7 7.1E-05 2.4E-09 76.0 7.8 107 652-761 180-306 (338)
184 3ro3_A PINS homolog, G-protein 97.7 0.00016 5.5E-09 64.0 9.3 128 586-713 11-155 (164)
185 3rkv_A Putative peptidylprolyl 97.6 0.00013 4.5E-09 64.9 8.6 100 618-720 13-131 (162)
186 1dce_A Protein (RAB geranylger 97.6 0.00062 2.1E-08 74.1 14.9 157 599-760 44-233 (567)
187 3dss_A Geranylgeranyl transfer 97.6 0.0014 4.8E-08 65.0 15.9 149 600-753 90-272 (331)
188 2hr2_A Hypothetical protein; a 97.6 0.00035 1.2E-08 60.4 9.9 94 618-713 13-128 (159)
189 3lvg_A Clathrin heavy chain 1; 97.6 0.00012 4E-09 73.9 7.6 237 77-332 52-324 (624)
190 3k9i_A BH0479 protein; putativ 97.6 9.7E-05 3.3E-09 61.5 6.0 81 630-713 4-87 (117)
191 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0004 1.4E-08 73.8 11.8 93 616-713 317-412 (457)
192 1ihg_A Cyclophilin 40; ppiase 97.5 0.00012 4E-09 75.3 7.3 121 617-759 224-347 (370)
193 1ihg_A Cyclophilin 40; ppiase 97.5 0.00061 2.1E-08 69.9 11.6 135 584-739 223-361 (370)
194 1zu2_A Mitochondrial import re 97.5 4.1E-05 1.4E-09 66.1 2.2 107 627-759 13-131 (158)
195 4b4t_Q 26S proteasome regulato 97.4 0.0016 5.4E-08 68.8 14.3 158 517-674 58-239 (434)
196 2l6j_A TPR repeat-containing p 97.4 0.00015 5.3E-09 59.4 4.8 90 617-711 5-102 (111)
197 1dce_A Protein (RAB geranylger 97.3 0.00037 1.3E-08 75.8 8.7 148 600-752 89-271 (567)
198 3n71_A Histone lysine methyltr 97.3 0.00034 1.1E-08 74.2 8.0 122 628-749 321-465 (490)
199 2l6j_A TPR repeat-containing p 97.3 0.00012 4.2E-09 60.0 3.3 89 650-741 3-100 (111)
200 3ly7_A Transcriptional activat 97.2 0.0045 1.5E-07 61.6 14.0 139 614-754 192-345 (372)
201 1zu2_A Mitochondrial import re 97.2 0.00027 9.3E-09 60.9 4.0 96 594-694 12-131 (158)
202 2kat_A Uncharacterized protein 97.1 0.0012 3.9E-08 54.5 7.7 75 634-713 3-79 (115)
203 3lvg_A Clathrin heavy chain 1; 97.1 0.00029 9.9E-09 71.1 4.3 433 179-673 53-534 (624)
204 1klx_A Cysteine rich protein B 97.1 0.0056 1.9E-07 52.3 11.8 112 630-750 9-128 (138)
205 2kat_A Uncharacterized protein 97.0 0.00094 3.2E-08 55.1 6.3 64 687-750 19-84 (115)
206 1na3_A Designed protein CTPR2; 97.0 0.00069 2.4E-08 52.9 5.0 71 688-758 10-82 (91)
207 1na3_A Designed protein CTPR2; 96.9 0.0032 1.1E-07 48.9 8.4 78 617-699 10-89 (91)
208 1klx_A Cysteine rich protein B 96.9 0.017 5.8E-07 49.3 13.2 82 594-678 35-124 (138)
209 3ma5_A Tetratricopeptide repea 96.9 0.0028 9.6E-08 50.6 7.6 62 615-678 6-68 (100)
210 3n71_A Histone lysine methyltr 96.9 0.0045 1.5E-07 65.6 11.1 63 618-680 395-464 (490)
211 3ma5_A Tetratricopeptide repea 96.8 0.002 6.7E-08 51.5 6.4 61 650-713 6-67 (100)
212 1pc2_A Mitochondria fission pr 96.7 0.0019 6.4E-08 55.0 5.5 103 666-770 13-123 (152)
213 3qww_A SET and MYND domain-con 96.6 0.0057 2E-07 63.6 8.9 91 664-754 311-422 (433)
214 2kc7_A BFR218_protein; tetratr 96.6 0.0036 1.2E-07 49.7 6.0 84 659-753 8-95 (99)
215 2kc7_A BFR218_protein; tetratr 96.5 0.00088 3E-08 53.4 2.0 53 624-678 8-62 (99)
216 3qwp_A SET and MYND domain-con 96.5 0.0062 2.1E-07 63.4 8.8 60 688-747 330-399 (429)
217 2v5f_A Prolyl 4-hydroxylase su 96.3 0.0091 3.1E-07 47.9 7.1 69 688-756 6-83 (104)
218 3bee_A Putative YFRE protein; 96.1 0.018 6.1E-07 44.9 7.4 66 686-751 5-75 (93)
219 3mkq_A Coatomer beta'-subunit; 96.1 0.26 8.9E-06 56.6 20.4 114 492-641 661-774 (814)
220 1nzn_A CGI-135 protein, fissio 95.9 0.021 7.3E-07 46.6 7.1 92 666-759 16-114 (126)
221 3mkq_A Coatomer beta'-subunit; 95.9 0.14 4.9E-06 58.8 17.2 102 593-713 661-762 (814)
222 3mkq_B Coatomer subunit alpha; 95.6 0.79 2.7E-05 40.0 16.1 130 591-745 12-141 (177)
223 3qww_A SET and MYND domain-con 95.5 0.02 6.8E-07 59.5 6.9 85 629-713 311-408 (433)
224 3ly7_A Transcriptional activat 95.5 0.15 5.2E-06 50.7 12.7 62 615-678 276-337 (372)
225 3qwp_A SET and MYND domain-con 95.2 0.074 2.5E-06 55.3 10.2 89 625-713 296-397 (429)
226 3bee_A Putative YFRE protein; 95.2 0.18 6.1E-06 39.1 10.0 62 615-678 5-70 (93)
227 1pc2_A Mitochondria fission pr 94.5 0.22 7.5E-06 42.3 9.4 86 632-720 14-105 (152)
228 1qsa_A Protein (soluble lytic 93.9 8.7 0.0003 41.6 26.8 122 630-759 228-355 (618)
229 4h7y_A Dual specificity protei 93.5 0.32 1.1E-05 40.7 8.1 52 701-753 74-128 (161)
230 1y8m_A FIS1; mitochondria, unk 93.1 0.39 1.3E-05 39.8 8.2 87 684-770 36-129 (144)
231 3u64_A Protein TP_0956; tetrat 92.8 0.12 4.1E-06 49.2 5.2 77 632-713 179-266 (301)
232 2v5f_A Prolyl 4-hydroxylase su 92.7 0.43 1.5E-05 37.9 7.9 66 653-718 7-78 (104)
233 3u64_A Protein TP_0956; tetrat 92.6 0.26 9E-06 46.8 7.3 78 600-679 179-268 (301)
234 3mkq_B Coatomer subunit alpha; 91.2 7.1 0.00024 34.0 15.7 127 560-714 16-142 (177)
235 3o48_A Mitochondria fission 1 91.0 1 3.6E-05 36.8 8.2 74 684-757 37-116 (134)
236 1wy6_A Hypothetical protein ST 90.4 6.4 0.00022 32.2 12.4 137 424-581 18-157 (172)
237 2uwj_G Type III export protein 90.0 2.8 9.7E-05 31.8 8.9 91 54-149 16-106 (115)
238 2p58_C Putative type III secre 89.4 3.1 0.00011 31.7 8.8 92 53-149 16-107 (116)
239 3lpz_A GET4 (YOR164C homolog); 89.2 17 0.0006 35.4 20.3 166 183-374 38-214 (336)
240 2wpv_A GET4, UPF0363 protein Y 89.1 17 0.00058 35.2 18.5 131 385-526 36-177 (312)
241 3lpz_A GET4 (YOR164C homolog); 88.0 21 0.00071 34.8 20.7 110 588-710 39-159 (336)
242 3ltm_A Alpha-REP4; protein eng 87.7 15 0.00053 33.1 17.4 142 76-225 30-171 (211)
243 3ltj_A Alpharep-4; protein eng 87.7 15 0.00051 32.8 17.9 142 76-225 25-166 (201)
244 1nzn_A CGI-135 protein, fissio 87.4 8.8 0.0003 31.2 11.2 83 566-651 18-107 (126)
245 4ady_A RPN2, 26S proteasome re 87.1 45 0.0016 37.8 37.8 127 523-654 533-664 (963)
246 4h7y_A Dual specificity protei 87.0 5.2 0.00018 33.5 9.6 115 610-727 7-136 (161)
247 4b4t_P 26S proteasome regulato 86.9 31 0.0011 35.7 19.7 185 528-713 30-244 (445)
248 2ff4_A Probable regulatory pro 86.7 3.1 0.00011 42.3 10.4 71 619-691 174-249 (388)
249 1zbp_A Hypothetical protein VP 86.7 3.7 0.00013 38.4 9.7 124 625-755 6-136 (273)
250 4b4t_P 26S proteasome regulato 86.7 20 0.0007 37.0 16.7 184 563-747 30-246 (445)
251 3ffl_A Anaphase-promoting comp 86.5 3.7 0.00013 35.2 8.8 120 616-745 20-148 (167)
252 4gns_B Protein CSD3, chitin bi 86.3 13 0.00044 41.2 15.4 50 662-714 348-398 (754)
253 3ffl_A Anaphase-promoting comp 85.3 4.8 0.00016 34.5 8.9 136 578-727 12-163 (167)
254 3txn_A 26S proteasome regulato 84.9 32 0.0011 34.6 16.4 57 657-713 105-165 (394)
255 2wpv_A GET4, UPF0363 protein Y 83.9 32 0.0011 33.2 20.8 113 587-711 36-158 (312)
256 1v54_E Cytochrome C oxidase po 82.3 5 0.00017 30.8 6.8 63 125-188 25-87 (109)
257 1wy6_A Hypothetical protein ST 82.0 20 0.00068 29.4 15.7 63 686-748 90-154 (172)
258 1v54_E Cytochrome C oxidase po 81.6 11 0.00037 29.0 8.4 63 631-695 25-87 (109)
259 4gns_B Protein CSD3, chitin bi 81.5 11 0.00038 41.6 12.4 125 620-746 252-398 (754)
260 1wdy_A 2-5A-dependent ribonucl 80.2 18 0.0006 34.4 12.6 19 86-104 43-61 (285)
261 3o48_A Mitochondria fission 1 78.7 12 0.00042 30.6 8.6 71 647-720 36-112 (134)
262 4fhn_B Nucleoporin NUP120; pro 77.3 31 0.0011 40.8 15.5 164 486-667 815-987 (1139)
263 1n11_A Ankyrin; clathrin, BAND 77.2 45 0.0015 34.2 15.4 133 66-207 29-170 (437)
264 1y8m_A FIS1; mitochondria, unk 76.9 23 0.0008 29.4 9.9 71 648-719 36-110 (144)
265 2uwj_G Type III export protein 76.4 13 0.00044 28.4 7.3 87 158-249 19-105 (115)
266 1wdy_A 2-5A-dependent ribonucl 76.4 32 0.0011 32.5 13.1 244 83-347 6-281 (285)
267 4ady_A RPN2, 26S proteasome re 75.8 1.1E+02 0.0039 34.6 41.2 217 492-713 383-620 (963)
268 2ff4_A Probable regulatory pro 74.7 5.4 0.00018 40.5 7.1 67 654-723 174-249 (388)
269 2y69_E Cytochrome C oxidase su 74.3 20 0.00067 29.3 8.4 61 633-695 70-130 (152)
270 1n11_A Ankyrin; clathrin, BAND 73.7 83 0.0028 32.1 16.7 148 84-245 16-173 (437)
271 1k1a_A B-cell lymphoma 3-encod 72.7 38 0.0013 30.9 12.3 147 53-205 15-172 (241)
272 2p58_C Putative type III secre 71.4 32 0.0011 26.3 9.6 84 363-451 23-106 (116)
273 1oyz_A Hypothetical protein YI 68.8 79 0.0027 29.8 20.0 49 77-125 35-83 (280)
274 2y69_E Cytochrome C oxidase su 68.0 37 0.0013 27.7 8.7 60 431-491 71-130 (152)
275 3kea_A K1L; tropism, ANK repea 66.9 40 0.0014 32.2 11.2 170 66-248 46-225 (285)
276 1zbp_A Hypothetical protein VP 66.0 42 0.0014 31.4 10.2 108 593-713 6-126 (273)
277 4fhn_B Nucleoporin NUP120; pro 65.0 48 0.0017 39.2 13.3 157 589-748 847-1050(1139)
278 3kea_A K1L; tropism, ANK repea 64.7 65 0.0022 30.6 12.2 19 86-104 35-53 (285)
279 4b4t_R RPN7, 26S proteasome re 64.6 34 0.0012 35.2 10.6 95 586-680 133-237 (429)
280 3jxi_A Vanilloid receptor-rela 63.5 15 0.00053 34.4 7.4 89 120-208 12-118 (260)
281 3eu9_A Huntingtin-interacting 61.8 52 0.0018 29.9 10.7 43 65-107 23-67 (240)
282 3ltm_A Alpha-REP4; protein eng 60.3 93 0.0032 27.6 19.7 22 609-630 150-171 (211)
283 3ljn_A Hypothetical protein; a 58.8 48 0.0016 32.9 10.5 153 43-205 17-195 (364)
284 3eiq_C Programmed cell death p 58.6 81 0.0028 31.2 11.4 62 285-346 221-287 (358)
285 3hra_A Ankyrin repeat family p 57.2 54 0.0018 28.8 9.6 148 89-245 12-172 (201)
286 4g8k_A 2-5A-dependent ribonucl 57.0 93 0.0032 30.3 12.1 81 289-381 244-328 (337)
287 3jxi_A Vanilloid receptor-rela 56.4 25 0.00086 32.8 7.5 56 218-273 9-73 (260)
288 3eiq_C Programmed cell death p 55.3 61 0.0021 32.0 9.9 68 386-453 221-293 (358)
289 2qx5_A Nucleoporin NIC96; mRNA 54.1 2.4E+02 0.0083 30.6 20.8 36 419-458 300-335 (661)
290 1k1a_A B-cell lymphoma 3-encod 51.0 64 0.0022 29.3 9.3 83 120-206 16-102 (241)
291 3ltj_A Alpharep-4; protein eng 48.9 1.4E+02 0.0047 26.2 20.7 46 484-529 29-74 (201)
292 3ljn_A Hypothetical protein; a 48.7 44 0.0015 33.2 8.2 15 393-407 252-266 (364)
293 2rfa_A Transient receptor pote 48.7 1.3E+02 0.0044 27.1 11.0 56 187-243 125-183 (232)
294 2nsz_A Programmed cell death p 48.1 49 0.0017 27.0 6.8 64 82-145 10-78 (129)
295 3hra_A Ankyrin repeat family p 47.2 55 0.0019 28.8 7.9 17 190-206 12-28 (201)
296 3b7b_A Euchromatic histone-lys 46.9 1.1E+02 0.0038 27.6 10.2 193 65-272 25-233 (237)
297 3mv2_A Coatomer subunit alpha; 44.9 1.3E+02 0.0046 28.9 10.0 108 626-751 124-239 (325)
298 3eu9_A Huntingtin-interacting 44.8 64 0.0022 29.2 8.2 109 88-205 15-131 (240)
299 4b4t_S RPN3, 26S proteasome re 43.6 1E+02 0.0035 32.1 9.7 60 80-139 232-299 (523)
300 3esl_A Checkpoint serine/threo 42.5 1.8E+02 0.0062 25.8 10.5 55 630-685 93-148 (202)
301 2zu6_B Programmed cell death p 42.4 1.4E+02 0.0048 28.7 10.0 72 415-487 168-241 (307)
302 4b4t_S RPN3, 26S proteasome re 42.1 94 0.0032 32.4 9.1 69 687-755 231-306 (523)
303 3esl_A Checkpoint serine/threo 37.6 1.6E+02 0.0054 26.2 8.6 54 664-718 92-149 (202)
304 4b4t_R RPN7, 26S proteasome re 37.6 66 0.0023 33.0 7.4 118 631-749 109-238 (429)
305 2ion_A PDCD4, programmed cell 37.5 52 0.0018 27.8 5.4 64 82-145 12-80 (152)
306 2zu6_B Programmed cell death p 37.4 1.8E+02 0.0063 27.9 10.0 68 517-585 169-238 (307)
307 2fu4_A Ferric uptake regulatio 36.3 93 0.0032 22.6 6.2 62 134-196 6-68 (83)
308 2ion_A PDCD4, programmed cell 35.6 1.9E+02 0.0064 24.3 8.6 64 386-449 13-81 (152)
309 3utm_A Tankyrase-1; tankyrase, 35.5 3.1E+02 0.01 26.3 13.8 119 113-245 25-151 (351)
310 3aji_A 26S proteasome non-ATPa 35.2 1.4E+02 0.0049 26.6 8.9 18 86-103 10-27 (231)
311 2pnn_A Transient receptor pote 34.3 1.1E+02 0.0036 28.7 8.0 19 188-206 106-124 (273)
312 4g8k_A 2-5A-dependent ribonucl 33.3 3.3E+02 0.011 26.1 12.2 27 115-145 27-53 (337)
313 2etb_A Transient receptor pote 31.4 3E+02 0.01 25.0 11.2 90 117-207 6-114 (256)
314 2nsz_A Programmed cell death p 30.8 2.1E+02 0.0073 23.1 10.0 64 386-449 11-79 (129)
315 2d2s_A Exocyst complex compone 29.9 2.5E+02 0.0084 25.7 9.1 85 520-607 24-114 (235)
316 1qsa_A Protein (soluble lytic 29.3 5.6E+02 0.019 27.5 37.4 333 285-640 76-437 (618)
317 2d2s_A Exocyst complex compone 29.0 1.7E+02 0.0058 26.8 7.9 21 319-339 25-45 (235)
318 3b7b_A Euchromatic histone-lys 26.2 2E+02 0.0069 25.7 8.3 42 334-375 192-235 (237)
319 2fu4_A Ferric uptake regulatio 25.4 1.9E+02 0.0066 20.8 6.9 61 538-599 6-67 (83)
320 1bd8_A P19INK4D CDK4/6 inhibit 25.2 2.6E+02 0.009 22.8 8.2 19 187-205 105-123 (156)
321 3bu8_A Telomeric repeat-bindin 25.2 1.8E+02 0.0061 26.0 6.6 19 695-713 122-140 (235)
322 2qx5_A Nucleoporin NIC96; mRNA 25.1 6.8E+02 0.023 27.1 20.4 24 350-373 155-178 (661)
323 2rfa_A Transient receptor pote 25.1 1.7E+02 0.0059 26.1 7.5 54 221-278 128-183 (232)
324 4a1g_A Mitotic checkpoint seri 25.0 3.1E+02 0.01 23.0 8.2 50 635-685 84-134 (152)
325 2r9g_A AAA ATPase, central reg 24.9 3.6E+02 0.012 23.8 10.2 57 424-481 25-86 (204)
326 3t8k_A Uncharacterized protein 24.7 3E+02 0.01 23.8 8.6 56 191-246 14-70 (186)
327 3d9h_A CDNA FLJ77766, highly s 24.1 1.6E+02 0.0054 27.7 7.2 18 83-100 16-33 (285)
328 4a1g_A Mitotic checkpoint seri 23.7 3.2E+02 0.011 22.9 9.6 35 615-649 100-134 (152)
329 2f8y_A Notch homolog 1, transl 23.7 3.6E+02 0.012 23.6 9.4 177 85-270 28-212 (223)
330 2w57_A Ferric uptake regulatio 23.6 2E+02 0.0068 24.0 6.8 62 235-297 6-68 (150)
331 1oyz_A Hypothetical protein YI 22.6 4.6E+02 0.016 24.2 23.0 47 582-629 140-186 (280)
332 2r9g_A AAA ATPase, central reg 22.5 4E+02 0.014 23.5 8.8 62 519-581 16-85 (204)
333 2xig_A Ferric uptake regulatio 22.5 2.3E+02 0.0078 23.6 7.0 67 228-295 9-75 (150)
334 1mzb_A Ferric uptake regulatio 22.2 1.9E+02 0.0065 23.6 6.3 60 235-295 7-67 (136)
335 2etb_A Transient receptor pote 22.1 62 0.0021 30.0 3.7 54 152-205 6-68 (256)
336 1ug3_A EIF4GI, eukaryotic prot 22.1 4.5E+02 0.015 25.6 10.1 141 486-641 14-166 (339)
337 2fe3_A Peroxide operon regulat 22.1 1.4E+02 0.0047 24.8 5.4 60 136-196 13-72 (145)
338 3bqo_A Telomeric repeat-bindin 21.8 1.7E+02 0.0057 25.8 5.7 28 727-754 125-152 (211)
339 3bge_A Predicted ATPase; struc 21.8 3.6E+02 0.012 23.7 7.9 39 424-462 18-56 (201)
340 3twr_A Tankyrase-2; ankyrin re 21.5 3.1E+02 0.011 22.6 8.0 19 86-104 12-30 (165)
341 3l6a_A Eukaryotic translation 20.9 1.6E+02 0.0053 29.3 6.4 124 83-206 16-148 (364)
342 3txn_A 26S proteasome regulato 20.1 6.6E+02 0.023 25.0 21.5 159 449-607 20-204 (394)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-38 Score=357.60 Aligned_cols=495 Identities=10% Similarity=-0.047 Sum_probs=343.7
Q ss_pred HHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHH
Q 036290 190 YAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIH 269 (796)
Q Consensus 190 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 269 (796)
+.+.|....+...++.++.+++..|+.++..|.+.|++++|..+|++|.+ ..|+..++..+..+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677888888889988888999999999999999999999999999985 5678899999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCC-------------------CcchHHHHHHHHHhCCCccH
Q 036290 270 GLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADK-------------------DVISWNTLFGGFSENKNPGQ 330 (796)
Q Consensus 270 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~ 330 (796)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678899999999999999999999999965433 37789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcc-hHHHHHHHhcccCChHHHH--HH-HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 036290 331 TASLFHKFILSGSRPNHV-TFSILLRQCGKLLDLDLGL--QL-QCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFD 406 (796)
Q Consensus 331 a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 406 (796)
|+++|++|.+.+ |+.. .+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998753 4433 3333433333322222111 11 3333333434444555556666666677777777776
Q ss_pred hCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCch
Q 036290 407 NVSY--KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGY 484 (796)
Q Consensus 407 ~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 484 (796)
++.+ ++..+|+.++..|.+.|++++|..+|+++.+. + +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------------------~-~~~~~ 340 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-----------------------------------D-PYNLD 340 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------C-TTCCT
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-----------------------------------C-cccHH
Confidence 6665 55566666666666666666666666665543 2 22333
Q ss_pred hHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 036290 485 ICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA 564 (796)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 564 (796)
++. .++.++.+.|++++|.++++++.+.. +.+..++..+...|.+.|+
T Consensus 341 ~~~-------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 341 VYP-------------------------------LHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp THH-------------------------------HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred HHH-------------------------------HHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence 333 33444444444444444444444321 3344445555555555555
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290 565 YQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKM 642 (796)
Q Consensus 565 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 642 (796)
+++|.++|+.+.+.... +..+++.++.+|.+.|++++|.++|++++.. ++..+|+.++.+|.+.|++++|.++|+++
T Consensus 389 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555443322 4556666777777777777777777554432 47788888999999999999999999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036290 643 KLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY---GMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF 715 (796)
Q Consensus 643 ~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 715 (796)
.+. .| +..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ..
T Consensus 468 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 468 YAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 884 44 67889999999999999999999999987442 55777 678999999999999999999999988 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 716 QP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 716 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.| +..+|..++.+|.+.|++++|.+.++++++++|+++.++..|++
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 44 77899999999999999999999999999999999988877643
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.8e-38 Score=351.81 Aligned_cols=347 Identities=8% Similarity=-0.060 Sum_probs=260.0
Q ss_pred HHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHH
Q 036290 88 MYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSI 167 (796)
Q Consensus 88 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 167 (796)
.+.+.|....+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|.+.|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356778888899999999989999999999999999999999999999984 568889999999999999999999999
Q ss_pred HHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCC-------------------CceeHHHHHHHHHhCCCch
Q 036290 168 HCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSD-------------------DVGCWNAMIGGYAHCGYGF 228 (796)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 228 (796)
++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 678999999999999999999999999964433 3778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchH--HHHH-HHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHh
Q 036290 229 EALNVVSSMLFEGITMDKYTFINALQGCSLVADFDI--GRQI-HGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFE 305 (796)
Q Consensus 229 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 305 (796)
+|+++|++|.+.+. -+...+..+...+...++.+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999988542 234445445444443332222 1122 4455555555666778888999999999999999999
Q ss_pred hcCC--CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchh
Q 036290 306 RMAD--KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEEN 383 (796)
Q Consensus 306 ~~~~--~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 383 (796)
++.+ ++..+|+.++..+.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|.++++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 789999999999999999999999999998765 3367788888888888888888888888887553 44666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 036290 384 VTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWE 441 (796)
Q Consensus 384 ~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 441 (796)
+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|+++|+++.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777776542 3455666666666666666666666666654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.7e-26 Score=247.79 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHcCCCCCc-chHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 330 QTASLFHKFILSGSRPNH-VTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNV 408 (796)
Q Consensus 330 ~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 408 (796)
.+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 445566677777665544 357778888888888888888888888888888888888888888877654331
Q ss_pred CCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhH
Q 036290 409 SYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSS 488 (796)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 488 (796)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 22345678889999999999999999999999999999999999999999999998776665555
Q ss_pred HHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHH
Q 036290 489 LIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRT 568 (796)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 568 (796)
+|.+| ++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|
T Consensus 146 lI~~~-------------------------------~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 146 ALFGF-------------------------------CRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHH-------------------------------HHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH-------------------------------HHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 55554 44555555555555555556666666666666666666666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290 569 KSIHPFVIKLGFNTEVYVASAVIDAYAK 596 (796)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~li~~~~~ 596 (796)
.+++++|.+.|..|+..+|+.++..|+.
T Consensus 195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 195 YKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666665555543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=3.2e-26 Score=245.68 Aligned_cols=210 Identities=10% Similarity=0.051 Sum_probs=138.7
Q ss_pred HHHHHHHHHHhcCCcccH-HHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcC
Q 036290 431 DVLKTFCNIWESGVEVNG-CTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGA 509 (796)
Q Consensus 431 ~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 509 (796)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 445566667666665443 357778888888888888888888888888888888888888888877765532
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHH
Q 036290 510 ERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASA 589 (796)
Q Consensus 510 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 589 (796)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|+++.|.+++++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23455788999999999999999999999999999999999999999999999999887777766
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036290 590 VIDAYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS 662 (796)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 662 (796)
+|.+|++.|++++|.++|+++... ||..+|++||.+|++.|++++|.+++++|++.|..|+..||+.++..|+
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 666666666555555555333222 3444444444444444444444444444444444444444444444443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=7.9e-24 Score=224.03 Aligned_cols=360 Identities=13% Similarity=0.043 Sum_probs=256.0
Q ss_pred HhcCChHHHHHHHHhCCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHH
Q 036290 393 CRCGAVEMAHSVFDNVSY--K-NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQ 469 (796)
Q Consensus 393 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 469 (796)
.+.|++++|...+..+.. | +...+..+...+.+.|++++|...++..... .+.+..+|..+...+...|++++|..
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 334444444444433321 1 2233333444444455555555555444432 12344455555555555555555555
Q ss_pred HHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 036290 470 IHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEK 546 (796)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 546 (796)
.++.+.+.. |.+...+..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+.. +
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 555555543 33445566666666667777777666665543 3 33455666667777788888888888877652 3
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHH
Q 036290 547 PDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIM 624 (796)
Q Consensus 547 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~ 624 (796)
-+..++..+...+...|+++.|...++.+.+.+.. +...+..+...+...|++++|...+++.+.. .+..++..+..
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 34667777788888888888888888888876544 5667788888888999999998888665543 36788889999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCh
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYL 703 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 703 (796)
.+...|++++|.+.++++.+ ..| +..+|..+...+.+.|++++|...++++.+. .+.+..++..++.++.+.|++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998 556 5678888999999999999999999999844 234478899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 704 EDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 704 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
++|.+.++++ ...| +..+|..++..+.+.|++++|...++++++++|+++.++..++
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg 380 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence 9999999988 4555 4678999999999999999999999999999999888776664
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.5e-22 Score=214.15 Aligned_cols=370 Identities=14% Similarity=0.105 Sum_probs=251.3
Q ss_pred HHHHHhCCCccHHHHHHHHHHHcCCCCCcc-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290 319 FGGFSENKNPGQTASLFHKFILSGSRPNHV-TFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGA 397 (796)
Q Consensus 319 i~~~~~~~~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 397 (796)
...+.+.|++++|.+.++++.+. .|+.. .+..+...+...|++++|...+....+.. +.+...+..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556677777777777776654 34433 33334444455666666666666555542 3345555556666666666
Q ss_pred hHHHHHHHHhCCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHH
Q 036290 398 VEMAHSVFDNVSY--K-NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAI 474 (796)
Q Consensus 398 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 474 (796)
+++|...|+++.. | +..+|..+...+.+.|++++|...|+++.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------------- 129 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--------------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------------
Confidence 6666665555432 2 233455555555555555555555555544
Q ss_pred HHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 036290 475 IKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYI 551 (796)
Q Consensus 475 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t 551 (796)
.. |.+...+..+...+...|++++|.+.|+++.+ .+..+|..+...+.+.|++++|...|+++.+.. +.+...
T Consensus 130 --~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 130 --YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp --HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 32 22334444455555555555555555554432 245567777777777777777777777776653 334566
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhc
Q 036290 552 LGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHH 629 (796)
Q Consensus 552 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~ 629 (796)
+..+...+...|+++.|...++...+.... +..++..+...|.+.|++++|.+.+++.+.. .+..+|..+...+.+.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 777777777888888888888777766543 5667778888888888888888888666543 3667888999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHH
Q 036290 630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAK 707 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 707 (796)
|++++|.+.++++.+. .| +..++..+...+...|++++|...++++. ...|+ ..++..++.+|.+.|++++|.
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKAL---EVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999884 44 77888899999999999999999999988 45666 778889999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 036290 708 HVIEIM-PFQPS-PTVYRSLLSGCRIHGN 734 (796)
Q Consensus 708 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 734 (796)
+.++++ ...|+ ...|..+...+...|+
T Consensus 360 ~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 360 MHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999888 56664 5677777777766553
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.1e-21 Score=213.90 Aligned_cols=439 Identities=13% Similarity=-0.050 Sum_probs=275.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290 315 WNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCR 394 (796)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 394 (796)
|......+.+.|++++|+..|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+...+..+..++.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3344455555666666666666665543 455555555566666666666666666655543 3344455556666666
Q ss_pred cCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHH
Q 036290 395 CGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIH 471 (796)
Q Consensus 395 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 471 (796)
.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 6666666666655432 1222222333322222222222222221111111111111100000000000000000000
Q ss_pred HHHHHhCC---------CCCchhHhHHHHHHHh---cCCcchHHHHHhcCCC-----------------CCHhhHHHHHH
Q 036290 472 GAIIKTGF---------SSCGYICSSLIKSYVN---FGQLDNSFEFSNGAER-----------------LDMASWGAMMS 522 (796)
Q Consensus 472 ~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~li~ 522 (796)
..+..... +.+...+......+.. .|++++|...|+.+.+ .+...|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 00000000 1112222333333332 5666666666554432 13456777888
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036290 523 ALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKG 602 (796)
Q Consensus 523 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 602 (796)
.+...|++++|...|+++.+.. |+...+..+...+...|+++.|...++.+.+.... +...+..+...|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999988764 44778888888999999999999999988876544 56788889999999999999
Q ss_pred HHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290 603 ARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 603 A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 679 (796)
|...+++.+.. .+...+..+...+...|++++|...++++.+ ..| +...+..+...+...|++++|...++++..
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999766543 4677888999999999999999999999988 345 567788888999999999999999999885
Q ss_pred hcCCCCC----chHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 036290 680 QYGMQPS----PDCYGCLVDMLSR---NGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLP 750 (796)
Q Consensus 680 ~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 750 (796)
...-.++ ...+..++.++.. .|++++|.+.++++ ...| +..+|..+...+.+.|++++|...++++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 4222222 3388899999999 99999999999987 3344 567888999999999999999999999999999
Q ss_pred CCCcceEEecC
Q 036290 751 KNDAAHVLLSK 761 (796)
Q Consensus 751 ~~~~~~~~l~~ 761 (796)
+++..+..+..
T Consensus 481 ~~~~~~~~~~~ 491 (514)
T 2gw1_A 481 TMEEKLQAITF 491 (514)
T ss_dssp SHHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 98887665543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=3e-19 Score=192.97 Aligned_cols=345 Identities=12% Similarity=0.039 Sum_probs=194.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 036290 381 EENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVET 457 (796)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 457 (796)
+...+..+...+.+.|++++|...|+.+.. .+..+|..+...+...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344455555555555555555555554432 234455555555555555555555555554432 1123334444444
Q ss_pred hcccCcHHHHHHHHHHHHHhCCCCCc---hhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHH
Q 036290 458 CCRSENQQMVGQIHGAIIKTGFSSCG---YICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAV 534 (796)
Q Consensus 458 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 534 (796)
+...|++++|...++.+.+.. +.+. ..+..+...+.. ..+..+...+.+.|++++|.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444444322 1112 222222222110 01112233466677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 036290 535 TIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS- 613 (796)
Q Consensus 535 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 613 (796)
..|+++.+.. +.+...+..+...+...|+++.|.+.++.+.+.... +...+..+..+|...|++++|...+++.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777776542 345566666666777777777777777766664332 4566666677777777777777766544432
Q ss_pred C-ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHH
Q 036290 614 N-DVIVYNTL------------IMAYAHHGLVSEAMEIFDKMKLANLQPS-----QATFVSVMSACSHKGLVDKGCLLFK 675 (796)
Q Consensus 614 ~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~ 675 (796)
| +...+..+ ...+...|++++|...|+++.+ ..|+ ...+..+...+.+.|++++|+..++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 33333333 6677777777777777777777 4454 3356666777777777777777777
Q ss_pred HhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----Ch
Q 036290 676 SMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSG------------CRIHG-----NK 735 (796)
Q Consensus 676 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-----~~ 735 (796)
++... .|+ ...|..++.+|...|++++|.+.++++ ...|+ ...+..+..+ |...| +.
T Consensus 320 ~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 320 EVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 77633 443 677777777777777777777777776 55554 3445444422 22233 55
Q ss_pred HHHHHHHHH-HHccCCCCC
Q 036290 736 ELGEWASEK-LLLLLPKND 753 (796)
Q Consensus 736 ~~A~~~~~~-~~~~~p~~~ 753 (796)
+++++.+++ +++..|++.
T Consensus 397 ~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp THHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 666777775 666777643
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.3e-19 Score=194.70 Aligned_cols=439 Identities=8% Similarity=-0.081 Sum_probs=219.1
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhh
Q 036290 213 CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYI 292 (796)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 292 (796)
.|...-..+.+.|++++|+..|+++.+.+ |+...+..+..++...|++++|...++.+.+.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34455566777777777777777776654 566666666666666666666666666665543 223344444444444
Q ss_pred cCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHH
Q 036290 293 KSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQL 369 (796)
Q Consensus 293 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 369 (796)
+.|++++|...|+.+.. ++......++..+........+.+.+..+...+..|+...+..-..
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------- 150 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE-------------- 150 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH--------------
Confidence 44444444444444321 1122222222222222222222222222222221221111110000
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC-ChhhHHHHHHHHHh---cCCchHHHHHHHHHHh----
Q 036290 370 QCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYK-NITTWNELLSGYCF---NCCDADVLKTFCNIWE---- 441 (796)
Q Consensus 370 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~---- 441 (796)
........|+.......+ ......... ..+..| +...+......+.. .|++++|...|+++.+
T Consensus 151 --~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 151 --RKDKQENLPSVTSMASFF----GIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHHHHHH----TTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred --HHhhccCCchhHHHHHHH----hhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 000001111111111110 000000000 000111 13334444444443 7888888888888776
Q ss_pred -cCC--------cccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC-
Q 036290 442 -SGV--------EVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER- 511 (796)
Q Consensus 442 -~g~--------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 511 (796)
... +.+..++..+...+...|+++.|...++.+.+.... ...+..+...|...|++++|.+.++.+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 211 223445666666777777788887777777776532 66666677777777777777776665543
Q ss_pred --CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHH
Q 036290 512 --LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASA 589 (796)
Q Consensus 512 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 589 (796)
.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++.+.+...
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------- 369 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP--------- 369 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST---------
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---------
Confidence 244556666666667777777777777666542 22334455555555555555555555555544322
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHh
Q 036290 590 VIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-------QATFVSVMSACS 662 (796)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~~~~ 662 (796)
.+...+..+...+...|++++|...++++.+. .|+ ...+..+...+.
T Consensus 370 ------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 370 ------------------------EAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp ------------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHH
T ss_pred ------------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHh
Confidence 23344555555555555566665555555542 221 225555666666
Q ss_pred c---cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290 663 H---KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS 718 (796)
Q Consensus 663 ~---~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 718 (796)
. .|++++|...++++... .|+ ..++..++.++.+.|++++|.+.++++ ...|+
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 6 66666666666666532 333 555566666666666666666666665 33443
No 10
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=7.2e-16 Score=174.35 Aligned_cols=523 Identities=13% Similarity=0.073 Sum_probs=288.9
Q ss_pred CCChhHhhHHHHHHHccCChhHHHHHhhccCC---------------CCc---------ee-------------HHHHHH
Q 036290 177 EKNPFVGCSVLNFYAKLGDVAAAERVFYSISS---------------DDV---------GC-------------WNAMIG 219 (796)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~---------~~-------------~~~li~ 219 (796)
.-|+.+....|.+.++.|++.+.+++..+-.- +|. .- ....|.
T Consensus 722 s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie 801 (1630)
T 1xi4_A 722 SQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIE 801 (1630)
T ss_pred cCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHH
Confidence 44778888889999999999888888765321 111 00 123455
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHh-------------hccCCCchHHHHHHHHHHHhcCCCChHHHHH
Q 036290 220 GYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQG-------------CSLVADFDIGRQIHGLIIRSEVECSISIVNA 286 (796)
Q Consensus 220 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 286 (796)
.|++.-++..+-.+...+.+.+. +......+|.. +-+.+++.....+++.-...| ..++.++|+
T Consensus 802 ~yv~~vnp~~~p~Vvg~lld~d~--~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hna 878 (1630)
T 1xi4_A 802 IYVQKVNPSRLPVVIGGLLDVDC--SEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNA 878 (1630)
T ss_pred HHHhccCCcccchhhhhhhcCCC--CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 55555555555555555544322 22233333333 333334444444455555555 458889999
Q ss_pred HHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHc----CCCCCcchHHHHHHHhcccCC
Q 036290 287 LIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILS----GSRPNHVTFSILLRQCGKLLD 362 (796)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~----g~~p~~~t~~~ll~~~~~~~~ 362 (796)
|...|...+.-.+ +.+.+ |..-=..++.-||...++..|.-.|++-.-. .+.-....|...-+-+.+..+
T Consensus 879 lakiyid~n~npe--~fL~~----n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d 952 (1630)
T 1xi4_A 879 LAKIYIDSNNNPE--RFLRE----NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKD 952 (1630)
T ss_pred HHHHHhccCCCHH--HHhhc----cCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcC
Confidence 9999987654222 22211 1111122334444444444443333320000 000011111111111111111
Q ss_pred h-----------HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC-C-----ChhhHHHHHHHH
Q 036290 363 L-----------DLGLQLQCLALHCGF--LDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY-K-----NITTWNELLSGY 423 (796)
Q Consensus 363 ~-----------~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~ 423 (796)
. +.-.++.++.....+ ..++.--...+..|...|.+.+|.+++++..- + +...-+.++.+.
T Consensus 953 ~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tA 1032 (1630)
T 1xi4_A 953 PELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTA 1032 (1630)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHH
Confidence 1 111122222222111 11222334556666677777777777776652 1 123444455555
Q ss_pred HhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHH
Q 036290 424 CFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSF 503 (796)
Q Consensus 424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 503 (796)
.+. +..+..+...+.... . ..-+-..|...|.+++|..+|++.. -.. .++-..+...+++++|.
T Consensus 1033 Ika-D~~Rv~eyI~kLd~~-d------~~eIA~Iai~lglyEEAf~IYkKa~-----~~~---~A~~VLie~i~nldrAi 1096 (1630)
T 1xi4_A 1033 IKA-DRTRVMEYINRLDNY-D------APDIANIAISNELFEEAFAIFRKFD-----VNT---SAVQVLIEHIGNLDRAY 1096 (1630)
T ss_pred HHh-ChhhHHHHHHHhhhc-c------HHHHHHHHHhCCCHHHHHHHHHHcC-----CHH---HHHHHHHHHHhhHHHHH
Confidence 554 445555555444311 1 1224445566677777777777641 111 11111222666777777
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290 504 EFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE 583 (796)
Q Consensus 504 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 583 (796)
++.++.. +..+|..+..++...|++++|.+.|.+. -|...|..++.+|.+.|+++++.+++...++.. ++
T Consensus 1097 E~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e 1166 (1630)
T 1xi4_A 1097 EFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RE 1166 (1630)
T ss_pred HHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cc
Confidence 7777653 4566777777777777777777777542 455666777777777777777777777666644 23
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036290 584 VYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH 663 (796)
Q Consensus 584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 663 (796)
+...+.++.+|.+.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+
T Consensus 1167 ~~Idt~LafaYAKl~rleele~fI----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1167 SYVETELIFALAKTNRLAELEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred ccccHHHHHHHHhhcCHHHHHHHH----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 333334777777777777544333 3445556666777777777777777777764 257777777777
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 036290 664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASE 743 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (796)
.|++++|.+.+++.. +..+|..+..++...|++..|...... +..++..+..++..|.+.|.+++|+.+++
T Consensus 1234 Lge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred hCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777776553 346677777777777777777766654 33344455677777777777777777777
Q ss_pred HHHccCCCCCcce
Q 036290 744 KLLLLLPKNDAAH 756 (796)
Q Consensus 744 ~~~~~~p~~~~~~ 756 (796)
.++.++|.+...+
T Consensus 1305 ~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1305 AALGLERAHMGMF 1317 (1630)
T ss_pred HHhccChhHhHHH
Confidence 7777777666666
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=9.8e-20 Score=196.85 Aligned_cols=309 Identities=12% Similarity=0.080 Sum_probs=237.2
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290 412 NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK 491 (796)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (796)
+...|..+...+.+.|++++|+..|+++.+. .+.+..++..+..++...|+++.|...++.+.+.+ +.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~-------- 94 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFT-------- 94 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcH--------
Confidence 4556777777888888888888888877764 22345566666666666666666666666666654 2333
Q ss_pred HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------
Q 036290 492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE----YILGTI------------ 555 (796)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------ 555 (796)
..|..+...|.+.|++++|...|+++.+. .|+. ..+..+
T Consensus 95 -----------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 95 -----------------------AARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555543 2322 233222
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChH
Q 036290 556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVS 633 (796)
Q Consensus 556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 633 (796)
...+...|+++.|...++.+.+.... +...+..+..+|.+.|++++|.+.+++.+.. .+...|..+...|...|+++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34577899999999999999987654 7788999999999999999999999766653 47889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHH
Q 036290 634 EAMEIFDKMKLANLQPSQ-ATFVSV------------MSACSHKGLVDKGCLLFKSMDSQYGMQPS-----PDCYGCLVD 695 (796)
Q Consensus 634 ~A~~~~~~m~~~g~~p~~-~t~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~ 695 (796)
+|...|+++.+ ..|+. ..+..+ ...|.+.|++++|..+|+++... .|+ ...+..++.
T Consensus 229 ~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 229 LSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHH
Confidence 99999999998 56644 344444 78899999999999999999844 555 347888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 696 MLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
++.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++..|+.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 999999999999999997 4445 67899999999999999999999999999999999998887773
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=3.8e-19 Score=197.06 Aligned_cols=431 Identities=12% Similarity=-0.005 Sum_probs=300.6
Q ss_pred chHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036290 313 ISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMF 392 (796)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 392 (796)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++.+.|++++|.+.++.+.+.. +.+...+..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345666667777777777777777776653 2245566677777777777888877777777664 44566777778888
Q ss_pred HhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhc------CCcccHHHHHHHHHHhcccCcHHH
Q 036290 393 CRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWES------GVEVNGCTFFYVVETCCRSENQQM 466 (796)
Q Consensus 393 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 466 (796)
...|++++|...|+.+. .+....+..+..+...+...++...++++... ...|+.......+. ..+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCHHH
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcChHH
Confidence 88888888888886443 22222233344455555566777777777543 23344444433332 222222
Q ss_pred HHHHHHHHHHhCCCCCch---hHhHHHHHHHh--------cCCcchHHHHHhcCCC--CC--------HhhHHHHHHHHH
Q 036290 467 VGQIHGAIIKTGFSSCGY---ICSSLIKSYVN--------FGQLDNSFEFSNGAER--LD--------MASWGAMMSALV 525 (796)
Q Consensus 467 a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~ 525 (796)
+...+.. ....+.. ....+...+.. .|++++|..+++.+.+ |+ ..+|..+...+.
T Consensus 179 ~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 179 EVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 2111111 1111111 22222222222 2467777777777665 22 224666677888
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 036290 526 HQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARM 605 (796)
Q Consensus 526 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 605 (796)
..|++++|...+++..+. .|+...+..+...+...|+++.|.+.++.+.+.... +..++..+...|...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 899999999999999876 566888888999999999999999999999887654 67789999999999999999999
Q ss_pred HHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 036290 606 AFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYG 682 (796)
Q Consensus 606 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 682 (796)
.+++.+.. .+...|..+...+...|++++|...++++.+. .| +...+..+...+...|++++|...++++.+...
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99766543 36788999999999999999999999999984 45 566888899999999999999999999875421
Q ss_pred CCCC----chHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 683 MQPS----PDCYGCLVDMLSRN----------GYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLL 746 (796)
Q Consensus 683 ~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 746 (796)
-.++ ...+..+..++.+. |++++|.+.++++ ...| +..+|..+..++.+.|++++|...+++++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1121 22344556778888 9999999999988 3344 56789999999999999999999999999
Q ss_pred ccCCCCCcceEEe
Q 036290 747 LLLPKNDAAHVLL 759 (796)
Q Consensus 747 ~~~p~~~~~~~~l 759 (796)
+++|+++.....+
T Consensus 490 ~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 490 ILARTMDEKLQAT 502 (537)
T ss_dssp HHC--CHHHHHHH
T ss_pred HhCCCcHHHHHHH
Confidence 9999887765433
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=6.7e-15 Score=166.61 Aligned_cols=522 Identities=10% Similarity=0.039 Sum_probs=310.2
Q ss_pred HHHHHHHHHhcC--CCChhHhhHHHHHHHccCChhHHHHHhhccCC-C-----CceeHHHHHHHHHhCCCchHHHHHHHH
Q 036290 165 YSIHCFALKIRI--EKNPFVGCSVLNFYAKLGDVAAAERVFYSISS-D-----DVGCWNAMIGGYAHCGYGFEALNVVSS 236 (796)
Q Consensus 165 ~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~ 236 (796)
+++.++.....+ ..++.-....+..|...|.+.+|.++++++.- + +....+.++.+..+. +..+..++.+.
T Consensus 968 R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k 1046 (1630)
T 1xi4_A 968 RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH
Confidence 344444444332 23444455667777788888888888887652 2 223455566666555 45566666555
Q ss_pred HHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHH
Q 036290 237 MLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWN 316 (796)
Q Consensus 237 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 316 (796)
.... + ...+-..|...|.+++|..+|+... ......+.++ -..+++++|.++.++... ..+|.
T Consensus 1047 Ld~~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn~--p~vWs 1109 (1630)
T 1xi4_A 1047 LDNY----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCNE--PAVWS 1109 (1630)
T ss_pred hhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcCC--HHHHH
Confidence 5321 1 2234555667778888888877652 1111112222 256777888877776643 45677
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036290 317 TLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCG 396 (796)
Q Consensus 317 ~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 396 (796)
.+..++...|++++|++.|.+. -|...|..++.++.+.|+++++.+.+....+.. ++..+.+.++.+|++.+
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 7788888888888888887552 455667778888888888888888887766654 33333445777788877
Q ss_pred ChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Q 036290 397 AVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIK 476 (796)
Q Consensus 397 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 476 (796)
++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++..
T Consensus 1182 rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1182 RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred CHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 777544443 3445566667777777888888888888774 36777788888888888888777765
Q ss_pred hCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290 477 TGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL 556 (796)
Q Consensus 477 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 556 (796)
.+..+|..+..++...|++..|...... ...++..+..++..|.+.|.+++|+.+++...... +-....|.-+.
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 3456777777777777777777776654 33455566677777888888888888886654322 12223343333
Q ss_pred HHHhc--cCchHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHhcc-------------C-CCC
Q 036290 557 NSCAA--IGAYQRTKSIHPFVIKLGFNT------EVYVASAVIDAYAKCGDIKGARMAFDQS-------------F-NSN 614 (796)
Q Consensus 557 ~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------~-~~~ 614 (796)
..+++ .++..+..+.|.. +.++++ +...|..++..|.+.|+++.|....-+. + +..
T Consensus 1322 iLyaKy~peklmEhlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~ 1399 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 1399 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccc
Confidence 33333 3333333333332 122222 4566777888888888888877333221 1 123
Q ss_pred ChhHHHHHHHHHHhcC---------------ChHHHHHHHHHH-------------HHCCCCCCHHHHHHHHHHHhccCC
Q 036290 615 DVIVYNTLIMAYAHHG---------------LVSEAMEIFDKM-------------KLANLQPSQATFVSVMSACSHKGL 666 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m-------------~~~g~~p~~~t~~~ll~~~~~~g~ 666 (796)
++..|...+..|...+ +.+++.++|.+. ...+.. ..=..+...+....+
T Consensus 1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~---~Vneal~el~ieeed 1476 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNK---SVNESLNNLFITEED 1476 (1630)
T ss_pred cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcch---hhhHHHHHHhcCccc
Confidence 6666666666666555 566665555421 111111 111122222233333
Q ss_pred HHHHH------------HHHHHhHhhcCCCCCchHHHHHH-HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036290 667 VDKGC------------LLFKSMDSQYGMQPSPDCYGCLV-DMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHG 733 (796)
Q Consensus 667 ~~~A~------------~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 733 (796)
++.-. .+.+++. +.+..-+..+. .+|.+.|+|..|.+++.+.+ .|...+.+..+.|
T Consensus 1477 ~~~Lr~si~~~~nfd~~~La~~le-----kheLl~frrIAa~ly~~n~~~~~ai~l~k~d~------l~~dAm~~a~~S~ 1545 (1630)
T 1xi4_A 1477 YQALRTSIDAYDNFDNISLAQRLE-----KHELIEFRRIAAYLFKGNNRWKQSVELCKKDS------LYKDAMQYASESK 1545 (1630)
T ss_pred hHHHHHHHhhccCcCHHHHHHHhh-----hhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc------CHHHHHHHHHHcC
Confidence 32111 1111111 11112223333 44555699999999999876 3556677778888
Q ss_pred ChHHHHHHHHHHHcc
Q 036290 734 NKELGEWASEKLLLL 748 (796)
Q Consensus 734 ~~~~A~~~~~~~~~~ 748 (796)
|.+.+++++.--.+.
T Consensus 1546 d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1546 DTELAEELLQWFLQE 1560 (1630)
T ss_pred CHHHHHHHHHHHHhc
Confidence 888887777665554
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=1.6e-17 Score=184.02 Aligned_cols=425 Identities=9% Similarity=-0.024 Sum_probs=193.5
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhh
Q 036290 213 CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYI 292 (796)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 292 (796)
.|..+...+.+.|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+...+..+...+.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 34555566667777777777777766543 2345566666666666666666666666666554 234556666666677
Q ss_pred cCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHH
Q 036290 293 KSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCL 372 (796)
Q Consensus 293 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 372 (796)
..|++++|...|+.+.. +....+..+..+...+....|...++++.... |+..
T Consensus 105 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~------------------------ 157 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG------------------------ 157 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred HcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc------------------------
Confidence 77777777777754321 11122222333444444556666666654321 0000
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChh---hHHHHHHHHHh--------cCCchHHHHHHHHHHh
Q 036290 373 ALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNIT---TWNELLSGYCF--------NCCDADVLKTFCNIWE 441 (796)
Q Consensus 373 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~a~~~~~~m~~ 441 (796)
....|+. ..+..+....+.+.+...+......+.. ....+...+.. .|++++|..+++++.+
T Consensus 158 ---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~ 230 (537)
T 3fp2_A 158 ---SQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS 230 (537)
T ss_dssp ----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---ccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0001111 1122233333444444433333322211 11222211111 1345555555555554
Q ss_pred cCCccc--------HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC
Q 036290 442 SGVEVN--------GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD 513 (796)
Q Consensus 442 ~g~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 513 (796)
. .|+ ..++..+...+...|+++.|...++.+.+.. |+...+..+...+...
T Consensus 231 ~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~----------------- 289 (537)
T 3fp2_A 231 A--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADK----------------- 289 (537)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCS-----------------
T ss_pred H--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHh-----------------
Confidence 3 222 1122333333344444444444444444432 1133333333333333
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290 514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA 593 (796)
Q Consensus 514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 593 (796)
|++++|...+++..+.. +.+..++..+...+...|+++.|.+.++.+.+.... +...+..+...
T Consensus 290 --------------~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 353 (537)
T 3fp2_A 290 --------------ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACL 353 (537)
T ss_dssp --------------SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHH
T ss_pred --------------cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34444444444333321 122333344444444444444444444444443222 23344444555
Q ss_pred HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHhcc--
Q 036290 594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-----PSQATFVSVMSACSHK-- 664 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~ll~~~~~~-- 664 (796)
|...|++++|...+++.+.. .+...+..+...+...|++++|.+.++++.+.... .....+......+...
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555333322 23445555555556666666666666555442100 0111233333444444
Q ss_pred --------CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 665 --------GLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 665 --------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
|++++|...++++.+. .|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6666666666666532 333 555666666666666666666666665
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=8.2e-17 Score=167.86 Aligned_cols=308 Identities=11% Similarity=0.056 Sum_probs=219.9
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHH
Q 036290 413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKS 492 (796)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 492 (796)
+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~- 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH- 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH-
Confidence 4456667777777788888888877776642 2234555556666666666666666666666553 333344444444
Q ss_pred HHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC----CHHHHHH------------HH
Q 036290 493 YVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKP----DEYILGT------------IL 556 (796)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p----~~~t~~~------------ll 556 (796)
.+...|++++|...|++..+. .| +...+.. +.
T Consensus 80 ------------------------------~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 80 ------------------------------LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp ------------------------------HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554433 23 1122222 24
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290 557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE 634 (796)
Q Consensus 557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 634 (796)
..+...|+++.|.+.++.+.+.... +...+..+...+...|++++|...+++.+.. .+...+..+...+...|++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 5667778888888888887776543 5677888888888899999999888766654 477888899999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHH------------HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-----hHHHHHHHH
Q 036290 635 AMEIFDKMKLANLQPSQ-ATFV------------SVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP-----DCYGCLVDM 696 (796)
Q Consensus 635 A~~~~~~m~~~g~~p~~-~t~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~ 696 (796)
|...+++..+ ..|+. ..+. .+...+.+.|++++|...++++... .|+. ..+..+..+
T Consensus 207 A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 207 SLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 9999999988 45533 3332 2256688899999999999999854 3542 335568899
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 697 LSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..|..
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99999999999999988 3345 67889999999999999999999999999999999888776655
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.8e-16 Score=161.31 Aligned_cols=376 Identities=12% Similarity=0.083 Sum_probs=150.6
Q ss_pred hcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHH
Q 036290 292 IKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQC 371 (796)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 371 (796)
-+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36688999999999996664 899999999999999999999965 3688899999999999999999999887
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHH
Q 036290 372 LALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTF 451 (796)
Q Consensus 372 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 451 (796)
...+. .++..+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------ 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------ 148 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------
Confidence 77764 45577888999999999999998887753 66668888888888888888888888755
Q ss_pred HHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChh
Q 036290 452 FYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNH 531 (796)
Q Consensus 452 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 531 (796)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++
T Consensus 149 --------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 149 --------------------------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp --------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHH
T ss_pred --------------------------------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHH
Confidence 13455555555666666666655555 25666667777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHHHHHHhc
Q 036290 532 EAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK--CGDIKGARMAFDQ 609 (796)
Q Consensus 532 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~ 609 (796)
.|...... +...+.-...++..|.+.|.++++..+++...... +-....|+-+.-+|++ .+++.+.++.|..
T Consensus 195 lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 195 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66443332 11222224456666777777777777776665544 3355666666666654 4567777777755
Q ss_pred cCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290 610 SFNSN-------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN-LQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY 681 (796)
Q Consensus 610 ~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 681 (796)
.+.-| +...|.-+...|.+.++++.|..+ |.+.- ..-+...|.-++.--....-+-+|..++- ..
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~- 341 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF- 341 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH-
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc-
Confidence 55443 567888999999999999988663 44421 11123333333322111111223333321 11
Q ss_pred CCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 036290 682 GMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-------------PFQPSPTVYRSLLSGCRIHGNKELGEWASE 743 (796)
Q Consensus 682 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (796)
. +..++.|+.++...=+...+.+++++. +-..+..+-.++-..+....|++.-+...+
T Consensus 342 --~--p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 342 --K--PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp --C--GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --C--HHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1 223444555554444555555555544 333344555566666777777776554444
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=1.8e-15 Score=157.66 Aligned_cols=322 Identities=11% Similarity=0.028 Sum_probs=234.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 036290 381 EENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVET 457 (796)
Q Consensus 381 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 457 (796)
+...+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456778888999999999999999998763 457789999999999999999999999998753 2356788888899
Q ss_pred hcccCcHHHHHHHHHHHHHhCCC---CCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHH
Q 036290 458 CCRSENQQMVGQIHGAIIKTGFS---SCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAV 534 (796)
Q Consensus 458 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 534 (796)
+...|++++|...++.+.+.. + .+...+..+...+. ...+..+...+...|++++|.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999998764 2 23333433322111 112233445666677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 036290 535 TIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS- 613 (796)
Q Consensus 535 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 613 (796)
..++++.+.. +.+...+..+...+...|+++.|...++.+.+.... +...+..+...|...|++++|...++..+..
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777766553 345566666666777777777777777777665433 5566777777777777777777777554432
Q ss_pred C-ChhHHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhccCCHHHHHHHHH
Q 036290 614 N-DVIVYN------------TLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA-----TFVSVMSACSHKGLVDKGCLLFK 675 (796)
Q Consensus 614 ~-~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~g~~~~A~~~~~ 675 (796)
| +...+. .+...+...|++++|...++++.+ ..|+.. .+..+...+...|++++|...++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 2 223222 336668899999999999999988 446432 24456678899999999999999
Q ss_pred HhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 036290 676 SMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCR 730 (796)
Q Consensus 676 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 730 (796)
++.+. .| ++..+..++.++.+.|++++|.+.++++ ...|+ ...+..+..+..
T Consensus 297 ~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 297 EVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99843 56 4788999999999999999999999998 66675 455666655543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.1e-16 Score=162.67 Aligned_cols=278 Identities=11% Similarity=0.009 Sum_probs=197.7
Q ss_pred CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290 480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL 556 (796)
Q Consensus 480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 556 (796)
+.+...+..+...+...|++++|.++|+.+.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45556666666777777777777777666543 234455566677777777788887777776652 33455666677
Q ss_pred HHHhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChH
Q 036290 557 NSCAAIG-AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVS 633 (796)
Q Consensus 557 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 633 (796)
..+...| +++.|.+.++...+.... +...+..+...+...|++++|.+.+++.+.. .+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 777788877777765433 4566777778888888888888887655442 34566667778888888888
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC-------CCCCchHHHHHHHHHHhcCChHH
Q 036290 634 EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYG-------MQPSPDCYGCLVDMLSRNGYLED 705 (796)
Q Consensus 634 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~ 705 (796)
+|.+.+++..+ ..| +...+..+...+...|++++|...++++.+... ......++..++.++.+.|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888877 445 556777777888888888888888888774321 12235677888888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 706 AKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 706 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
|.+.+++. ...| +...|..+..++...|++++|...++++++++|+++.++..|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 88888877 3333 45677888888888888888888888888888888877766643
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.6e-15 Score=152.75 Aligned_cols=223 Identities=9% Similarity=0.065 Sum_probs=79.6
Q ss_pred HccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHH
Q 036290 191 AKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHG 270 (796)
Q Consensus 191 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 270 (796)
-+.|++++|.+.++++..|+ .|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996664 8999999999999999999999753 678899999999999999999999887
Q ss_pred HHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchH
Q 036290 271 LIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTF 350 (796)
Q Consensus 271 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~ 350 (796)
...+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77664 45577889999999999999998888864 67779999999999999999999999876 477
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCch
Q 036290 351 SILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDA 430 (796)
Q Consensus 351 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 430 (796)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ....-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 77777777777777777777766 256777777777777777777766555443 33333445666677777777
Q ss_pred HHHHHHHHHHhc
Q 036290 431 DVLKTFCNIWES 442 (796)
Q Consensus 431 ~a~~~~~~m~~~ 442 (796)
+|..+++.....
T Consensus 225 Eai~lLe~aL~l 236 (449)
T 1b89_A 225 ELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC
Confidence 777777666543
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.6e-15 Score=154.39 Aligned_cols=287 Identities=13% Similarity=0.030 Sum_probs=192.4
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290 412 NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK 491 (796)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (796)
+...+..+...+...|++++|..+++++.... +.+...+..+...+...|++++|..+++.+.+.. +.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---------- 88 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PS---------- 88 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cC----------
Confidence 44455556666666666666666666665532 1122223333344444445555555544444432 22
Q ss_pred HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHH
Q 036290 492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQG-HNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKS 570 (796)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 570 (796)
+...|..+...+...| ++++|...|++..+.. +.+...+..+...+...|+++.|.+
T Consensus 89 ---------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 89 ---------------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp ---------------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 3445555556666666 6666666666665442 2234556666666677777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-
Q 036290 571 IHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANL- 647 (796)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 647 (796)
.++.+.+.... +...+..+...|...|++++|.+.+++.+.. .+...+..+...+...|++++|...+++..+...
T Consensus 147 ~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 147 AYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 77766665443 4455666778888888888888888666554 3677888888899999999999999988876311
Q ss_pred -------CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 036290 648 -------QPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP- 717 (796)
Q Consensus 648 -------~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 717 (796)
+.+..++..+...+...|++++|...++++.+. .|+ ...+..+..++.+.|++++|.+.++++ ...|
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 224568888999999999999999999999844 454 788899999999999999999999998 5666
Q ss_pred CHHHHHHHHHHH-HhcCChH
Q 036290 718 SPTVYRSLLSGC-RIHGNKE 736 (796)
Q Consensus 718 ~~~~~~~l~~~~-~~~g~~~ 736 (796)
+...+..+..++ ...|+.+
T Consensus 303 ~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHHhCchh
Confidence 556777777777 4556544
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=5.8e-14 Score=152.79 Aligned_cols=348 Identities=9% Similarity=-0.065 Sum_probs=213.4
Q ss_pred cCChHHHHHHHHhCCC-CChhhHHHHHHHHHh----cCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcc----cCcHH
Q 036290 395 CGAVEMAHSVFDNVSY-KNITTWNELLSGYCF----NCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCR----SENQQ 465 (796)
Q Consensus 395 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~ 465 (796)
.+++++|...|+...+ .+...+..+...|.. .++.++|..+|++..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 3444444444443322 233344444444444 444555555555544433 22223333333333 44555
Q ss_pred HHHHHHHHHHHhCCCCCchhHhHHHHHHHh----cCCcchHHHHHhcCCC-CCHhhHHHHHHHHHH----cCChhHHHHH
Q 036290 466 MVGQIHGAIIKTGFSSCGYICSSLIKSYVN----FGQLDNSFEFSNGAER-LDMASWGAMMSALVH----QGHNHEAVTI 536 (796)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~ 536 (796)
.|...++...+.| ++..+..|...|.. .++.++|.+.|++..+ .+...+..+...|.. .++.++|...
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 5555555555443 33444445555554 4556666666554433 345556666666666 6777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHh
Q 036290 537 FHSLVEAGEKPDEYILGTILNSCAA----IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK----CGDIKGARMAFD 608 (796)
Q Consensus 537 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 608 (796)
|++..+.| +...+..+...+.. .++.+.|..+++...+.| +...+..+..+|.. .++.++|.+.|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 77776654 34455555555553 667777777777776654 34555566666666 778888888887
Q ss_pred ccCCCCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhh
Q 036290 609 QSFNSNDVIVYNTLIMAYAHH-----GLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG---LVDKGCLLFKSMDSQ 680 (796)
Q Consensus 609 ~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~ 680 (796)
......+...+..+...|... +++++|...|++..+.| +...+..+...|...| ++++|.++|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 776667777777777777776 78888888888887754 3345555665665545 778888888887743
Q ss_pred cCCCCCchHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC-
Q 036290 681 YGMQPSPDCYGCLVDMLSR----NGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRI----HGNKELGEWASEKLLLLLPK- 751 (796)
Q Consensus 681 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~- 751 (796)
.++..+..|..+|.. .+++++|.+++++.-...++..+..|...|.. .+|.++|...++++.+.+|+
T Consensus 361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 356677778888877 78888888888877323456677777777776 78888888888888888743
Q ss_pred --CCcceEEecC
Q 036290 752 --NDAAHVLLSK 761 (796)
Q Consensus 752 --~~~~~~~l~~ 761 (796)
++.+...|+.
T Consensus 437 ~~~~~a~~~l~~ 448 (490)
T 2xm6_A 437 FGTENRNITEKK 448 (490)
T ss_dssp HHHHHHHHHHTT
T ss_pred cCCHHHHHHHHh
Confidence 5555555544
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=2.3e-15 Score=150.62 Aligned_cols=255 Identities=9% Similarity=0.005 Sum_probs=196.5
Q ss_pred HHHhcCCcchHHHHHhcCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHH
Q 036290 492 SYVNFGQLDNSFEFSNGAERLDM----ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQR 567 (796)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 567 (796)
-....|++..|+..++.....++ .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34456677777777666544222 2334456777888888888776644 135666777777788888888888
Q ss_pred HHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036290 568 TKSIHPFVIKLGFNT-EVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN 646 (796)
Q Consensus 568 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 646 (796)
|.+.++.+...+..| +...+..+...|...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 888888887776544 455666777899999999999999955 467889999999999999999999999999984
Q ss_pred CCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 036290 647 LQPSQATFV---SVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTV 721 (796)
Q Consensus 647 ~~p~~~t~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 721 (796)
.|+..... ..+..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|.+.+++. ...| ++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 57643221 2234445569999999999999955 2345888999999999999999999999997 4455 6678
Q ss_pred HHHHHHHHHhcCChHH-HHHHHHHHHccCCCCCcceE
Q 036290 722 YRSLLSGCRIHGNKEL-GEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 722 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~ 757 (796)
|..++..+...|+..+ +.++++++++++|+++.+..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999875 67999999999999987643
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.1e-13 Score=152.41 Aligned_cols=408 Identities=9% Similarity=0.032 Sum_probs=260.2
Q ss_pred CcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-cchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290 311 DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN-HVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLI 389 (796)
Q Consensus 311 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 389 (796)
+...|..++. +.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|+++.|..+|+.+.+.. |+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6667887777 46778888888888888754 343 3456666677777777777777777776653 4555555555
Q ss_pred HHH-HhcCChHHHHH----HHHhCC-----C-CChhhHHHHHHHHHh---------cCCchHHHHHHHHHHhcCCcccHH
Q 036290 390 YMF-CRCGAVEMAHS----VFDNVS-----Y-KNITTWNELLSGYCF---------NCCDADVLKTFCNIWESGVEVNGC 449 (796)
Q Consensus 390 ~~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~ 449 (796)
... ...|+.+.|.+ +|+... . ++...|...+....+ .|+++.|..+|++.......+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 422 33455555544 444321 1 234455555554433 456666666666666521111112
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhc-------CC------CCC---
Q 036290 450 TFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNG-------AE------RLD--- 513 (796)
Q Consensus 450 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~--- 513 (796)
.|..........+. ..+..++. .+.++++.|..++.. +. .|+
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 22221111000000 00000000 012233344333322 11 111
Q ss_pred -----HhhHHHHHHHHHHc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------cCchH-------
Q 036290 514 -----MASWGAMMSALVHQ----GHN----HEAVTIFHSLVEAGEKPDEYILGTILNSCAA-------IGAYQ------- 566 (796)
Q Consensus 514 -----~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~------- 566 (796)
...|...+...... ++. +.+..+|++..... +-+...|..+...+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23455444332222 222 36778888887652 4456677777776664 68876
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 567 RTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DV-IVYNTLIMAYAHHGLVSEAMEIFDKMK 643 (796)
Q Consensus 567 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 643 (796)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|++.+.. | +. ..|..++..+.+.|++++|.++|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888876323336788899999999999999999999777665 3 33 578999999999999999999999998
Q ss_pred HCCCCCC-HHHHHHHHHH-HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC----CCC
Q 036290 644 LANLQPS-QATFVSVMSA-CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQ 716 (796)
Q Consensus 644 ~~g~~p~-~~t~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 716 (796)
+. .|+ ...|...... +...|++++|..+|+...+. .|+ +..|..++..+.+.|+.++|..+|++. +..
T Consensus 384 ~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 384 ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 83 443 3333332222 33589999999999999854 465 788999999999999999999999998 223
Q ss_pred CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 717 PS--PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 717 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 32 348888888888999999999999999999885
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=2e-15 Score=158.04 Aligned_cols=295 Identities=10% Similarity=-0.014 Sum_probs=155.2
Q ss_pred HhcCChHHHHH-HHHhCCC-----C--ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcH
Q 036290 393 CRCGAVEMAHS-VFDNVSY-----K--NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQ 464 (796)
Q Consensus 393 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 464 (796)
...|++++|.. .|++... | +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34466666666 6654432 1 23445666666666666666666666666542 22333444444444444444
Q ss_pred HHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 036290 465 QMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAG 544 (796)
Q Consensus 465 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 544 (796)
+.|...++.+.+.. + .+..++..+...+...|++++|...++++....
T Consensus 115 ~~A~~~~~~al~~~-~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 115 LLAISALRRCLELK-P-------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp HHHHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcC-C-------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44444444444432 1 234455555555666666666666666665442
Q ss_pred CCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C---ChhHH
Q 036290 545 EKPDEY-ILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N---DVIVY 619 (796)
Q Consensus 545 ~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~ 619 (796)
|+.. .+..+.. .... .. ....+..+...+ ..|++++|...+++.+.. | +...+
T Consensus 163 --~~~~~~~~~~~~-------~~~~-----------~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 163 --PAYAHLVTPAEE-------GAGG-----------AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp --TTTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred --cCcHHHHHHHHH-------Hhhh-----------hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 2211 1100000 0000 00 000000111122 455555555555433322 1 35566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHH
Q 036290 620 NTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDML 697 (796)
Q Consensus 620 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 697 (796)
..+...+...|++++|...++++.+ ..| +..++..+...+...|++++|...++++.+. .|+ ...+..++.+|
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHH
Confidence 6667777777777777777777766 344 4556777777777777777777777777633 344 66677777777
Q ss_pred HhcCChHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 698 SRNGYLEDAKHVIEIM-PFQP------------SPTVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 698 ~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
.+.|++++|.+.++++ ...| ...+|..+..++...|+.++|..++++.++
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 7777777777777766 1111 146777788888888888888777776554
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=6.6e-17 Score=177.22 Aligned_cols=147 Identities=10% Similarity=0.003 Sum_probs=126.6
Q ss_pred chhhHHHHHHHHccCChhHHHHHhcccC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 036290 79 IFLQNNLIAMYSKCGYFGWGLRVFDEMA-------ERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSV 151 (796)
Q Consensus 79 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 151 (796)
..+||+||++|+++|++++|.++|++|. .||++|||+||.+||+.|+.++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997763 599999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-hHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCC-----CceeHHHHHHHHHhCC
Q 036290 152 MKVCVSMGAS-EFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSD-----DVGCWNAMIGGYAHCG 225 (796)
Q Consensus 152 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 225 (796)
|.++|+.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.+++..+..+ .+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999888877666666665555421 2334445556666555
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.64 E-value=1.4e-15 Score=159.12 Aligned_cols=259 Identities=14% Similarity=0.027 Sum_probs=184.5
Q ss_pred cCCcchHHH-HHhcCCC-----C--CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHH
Q 036290 496 FGQLDNSFE-FSNGAER-----L--DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQR 567 (796)
Q Consensus 496 ~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 567 (796)
.|++++|.+ .++.... | +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 5553332 1 23446666666777777777777777776553 3455666666667777777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHH---------------HHHHHHhcC
Q 036290 568 TKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNT---------------LIMAYAHHG 630 (796)
Q Consensus 568 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~---------------li~~~~~~g 630 (796)
|...++.+.+.... +...+..+...|...|++++|.+.+++.+.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 77777777665533 5666677777777777777777777554432 2 2222211 233334889
Q ss_pred ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHH
Q 036290 631 LVSEAMEIFDKMKLANLQPS---QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 631 ~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 706 (796)
++++|...++++.+ ..|+ ..++..+...+...|++++|...++++... .|+ ...+..++.++.+.|++++|
T Consensus 196 ~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 196 LFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998 4454 678889999999999999999999999844 455 78899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-----------CcceEEecC
Q 036290 707 KHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN-----------DAAHVLLSK 761 (796)
Q Consensus 707 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~ 761 (796)
.+.++++ ...| +..+|..+..++.+.|++++|...+++++++.|++ +.+|..|+.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 9999998 3444 56789999999999999999999999999999987 566665554
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=1.9e-12 Score=140.84 Aligned_cols=176 Identities=11% Similarity=-0.034 Sum_probs=96.9
Q ss_pred cCCcchHHHHHhcCCC-CCHhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----Cch
Q 036290 496 FGQLDNSFEFSNGAER-LDMASWGAMMSALVH----QGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI-----GAY 565 (796)
Q Consensus 496 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----~~~ 565 (796)
.+++++|.+.|+...+ .+...+..+...|.. .+++++|...|++..+.| +...+..+-..+... ++.
T Consensus 236 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 3344444444443322 233334444444444 455555666555554443 223333344444433 566
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHH
Q 036290 566 QRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG---DIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEI 638 (796)
Q Consensus 566 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 638 (796)
++|...++...+.| +...+..+...|...| +.++|.+.|++.....+...+..+...|.. .+++++|.+.
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 66666666655543 3344555555555544 566666666655555666666667666666 6677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhh
Q 036290 639 FDKMKLANLQPSQATFVSVMSACSH----KGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 639 ~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~ 680 (796)
|++..+.| +...+..|...|.. .+++++|...|++....
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 77776644 34455555555555 66777777777776644
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=7.6e-13 Score=145.55 Aligned_cols=409 Identities=14% Similarity=0.084 Sum_probs=264.4
Q ss_pred CCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHH
Q 036290 278 ECSISIVNALIDMYIKSSGMDYAFKVFERMAD--K-DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILL 354 (796)
Q Consensus 278 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll 354 (796)
+-+...|..++. +.+.|+++.|..+|+++.+ | +...|...+..+.+.|++++|.++|++.... .|+...+...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 347788999998 4788999999999999875 3 5668999999999999999999999999876 36666666555
Q ss_pred HHh-cccCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHHHhCCC-CCh---h
Q 036290 355 RQC-GKLLDLDLGLQ----LQCLALHC-GFLD-EENVTSSLIYMFCR---------CGAVEMAHSVFDNVSY-KNI---T 414 (796)
Q Consensus 355 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~-~~~---~ 414 (796)
... ...|+.+.|.+ +|+...+. |..| +...|...+....+ .|+++.|..+|++... |.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 432 34567766655 77766553 6554 56677777777655 7889999999998775 321 2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHH------hC---CCCCc--
Q 036290 415 TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIK------TG---FSSCG-- 483 (796)
Q Consensus 415 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~------~~---~~~~~-- 483 (796)
.|..........|. .+...++. ...+++..|..++..... .. ++|+.
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 23222211100010 01111111 122334444444443211 11 12221
Q ss_pred ------hhHhHHHHHHHhc----CCc----chHHHHHhcCCC---CCHhhHHHHHHHHHH-------cCChh-------H
Q 036290 484 ------YICSSLIKSYVNF----GQL----DNSFEFSNGAER---LDMASWGAMMSALVH-------QGHNH-------E 532 (796)
Q Consensus 484 ------~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~-------~ 532 (796)
..+...+...... ++. +.+..+|++... .+...|..+...+.+ .|+++ +
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 2233333222111 121 244455555443 355666666666654 57766 7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036290 533 AVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN 612 (796)
Q Consensus 533 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 612 (796)
|..+|++..+.-.+-+...+..+...+.+.|+++.|..+++.+.+.........|..++..+.+.|++++|.++|++.+.
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888877642123346677777777788888888888888887743321124777788888888888889888877776
Q ss_pred CC--ChhHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--
Q 036290 613 SN--DVIVYNTLIMA-YAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-- 686 (796)
Q Consensus 613 ~~--~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-- 686 (796)
.+ +...|...+.. +...|+.++|..+|++..+ ..| +...|..++..+.+.|+.++|..+|+++.......|+
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 54 22233222222 3368999999999999887 456 5677888888889999999999999998855333343
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
...|...+......|+.+.+.++.+++
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 347777788888899999999888877
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.7e-13 Score=148.74 Aligned_cols=369 Identities=11% Similarity=-0.048 Sum_probs=172.2
Q ss_pred chHHHHHHHhcccCChHHHHHHHHHHHHh--------CCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---------
Q 036290 348 VTFSILLRQCGKLLDLDLGLQLQCLALHC--------GFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY--------- 410 (796)
Q Consensus 348 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------- 410 (796)
..|+.+-..+...|+.++|.+.|+...+. ..+....+|+.+...|...|++++|...+++...
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 34666666666667777777666655431 1111234455555666666666666555544321
Q ss_pred --CChhhHHHHHHHHHh--cCCchHHHHHHHHHHhcCCcccH-HHHHHHHHH---hcccCcHHHHHHHHHHHHHhCCCCC
Q 036290 411 --KNITTWNELLSGYCF--NCCDADVLKTFCNIWESGVEVNG-CTFFYVVET---CCRSENQQMVGQIHGAIIKTGFSSC 482 (796)
Q Consensus 411 --~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 482 (796)
....++..+..++.. .+++++|+..|++..+. .|+. ..+..+..+ +...++.+.|.+.++..++.. +.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 011233333333332 22345555555554442 2221 111111111 222333344444444444433 222
Q ss_pred chhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290 483 GYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI 562 (796)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 562 (796)
..++..+...+...+ ...++.++|.+.+++..... +.+...+..+...+...
T Consensus 209 ~~~~~~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 209 QYLKVLLALKLHKMR---------------------------EEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHHHHHHHHHCC---------------------------------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHH---------------------------hhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHc
Confidence 333333332222211 11233444455444443332 22333444444444555
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------------cCCHHHHHHHHhccCC--CCChhHHHH
Q 036290 563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK-------------------CGDIKGARMAFDQSFN--SNDVIVYNT 621 (796)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~~~~--~~~~~~~~~ 621 (796)
|+++.|...++...+..+. +...+..+..+|.. .+..++|...++.... ..+...+..
T Consensus 261 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 339 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339 (472)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHH
T ss_pred CchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhh
Confidence 5555555555544443322 23333333333221 1235566666644433 246677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHH
Q 036290 622 LIMAYAHHGLVSEAMEIFDKMKLANLQPSQA--TFVSVMS-ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLS 698 (796)
Q Consensus 622 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 698 (796)
+...|...|++++|+..|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+........
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---- 412 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---- 412 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH----
Confidence 9999999999999999999998844333211 1222222 2357889999999999887 5677643332222
Q ss_pred hcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 699 RNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 699 ~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
..+.+++++. .. +.+..+|..+...+...|++++|++.+++++++.|.+|.+...+.
T Consensus 413 -----~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 -----DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2233344433 22 346678999999999999999999999999999999998876654
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=3.9e-15 Score=155.63 Aligned_cols=255 Identities=13% Similarity=0.058 Sum_probs=160.7
Q ss_pred HhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290 486 CSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI 562 (796)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 562 (796)
+..+...+.+.|++++|.+.|+.+.+ .+...|..+...+.+.|++++|...|++..+.. +.+..++..+...+...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 33444444444444444444444332 234445555555555555555555555554432 22344555555555555
Q ss_pred CchHHHHHHHHHHHHhCCCC---------chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C---ChhHHHHHHHHHHhc
Q 036290 563 GAYQRTKSIHPFVIKLGFNT---------EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N---DVIVYNTLIMAYAHH 629 (796)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~li~~~~~~ 629 (796)
|+++.|...++.+.+..... ....+..+...+...|++++|.+.+++.+.. | +...+..+...|...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 55555555555555432110 1223334566777777888887777655442 2 567788888888888
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHH
Q 036290 630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAK 707 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 707 (796)
|++++|.+.++++.+ ..| +..+|..+..+|...|++++|+..|+++.+. .|+ ..++..++.+|.+.|++++|.
T Consensus 227 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 227 GEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 899999999888887 445 6677888888889999999999999888833 555 778888899999999999999
Q ss_pred HHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 708 HVIEIM-PFQP-------------SPTVYRSLLSGCRIHGNKELGEWASEKLL 746 (796)
Q Consensus 708 ~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 746 (796)
+.++++ ...| +..+|..+..++...|+.+.+..+.++.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 998887 1111 25778899999999999988888776643
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=3.9e-15 Score=152.83 Aligned_cols=257 Identities=9% Similarity=0.007 Sum_probs=160.8
Q ss_pred HHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchH
Q 036290 490 IKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQ 566 (796)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 566 (796)
...+...|++++|..+|+.+.+ .+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHH
Confidence 3334444444444444433321 133344444444555555555555555544432 223444444455555555555
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhc
Q 036290 567 RTKSIHPFVIKLGFNTEVYVASAV--------------ID-AYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHH 629 (796)
Q Consensus 567 ~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~ 629 (796)
.|.+.++.+.+.... +...+..+ .. .+...|++++|.+.+++.+.. .+...+..+...+...
T Consensus 107 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 107 AALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 555555555443222 11111111 11 255667777777777554432 3667788888888888
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHH
Q 036290 630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAK 707 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 707 (796)
|++++|.+.++++.+ ..| +..++..+...+...|++++|...++++.+. .|+ ...+..++.++.+.|++++|.
T Consensus 186 ~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 186 NNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 888888888888887 345 5667888888888899999999999888743 444 777888888999999999999
Q ss_pred HHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290 708 HVIEIM-PFQPS-------------PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 708 ~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
+.++++ ...|+ ..+|..+..++.+.|+.++|..+++++++..|++.
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 888877 22333 56788888889999999999999888877665443
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=172.24 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=111.2
Q ss_pred ChHHHHHHHHhhhcCCCHHHHHHHHhhcC-------CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHH
Q 036290 280 SISIVNALIDMYIKSSGMDYAFKVFERMA-------DKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSI 352 (796)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ 352 (796)
-..+||+||++||+.|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44678899999999999999999987653 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 353 LLRQCGKLLDL-DLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS 409 (796)
Q Consensus 353 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 409 (796)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 99999999874 7889999999999999999999999988877765555555544443
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=1.7e-14 Score=150.71 Aligned_cols=265 Identities=12% Similarity=0.028 Sum_probs=188.7
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290 412 NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK 491 (796)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (796)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p----------- 130 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-P----------- 130 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C-----------
Confidence 44557777888888888888888888877642 2244555555555555555666655555555443 2
Q ss_pred HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHh
Q 036290 492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD-----------EYILGTILNSCA 560 (796)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~ 560 (796)
.+..+|..+...|...|++++|...|+++.+. .|+ ...+..+...+.
T Consensus 131 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 131 --------------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------
T ss_pred --------------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHh
Confidence 23455666666666667777777777766553 222 122334466788
Q ss_pred ccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHH
Q 036290 561 AIGAYQRTKSIHPFVIKLGFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAME 637 (796)
Q Consensus 561 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 637 (796)
..|+++.|.+.++.+.+.... ++...+..+...|...|++++|.+.+++.+.. .+..+|..+...|...|++++|..
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888999999999988886544 26778888999999999999999999766553 477899999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC----------CCCchHHHHHHHHHHhcCChHHH
Q 036290 638 IFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM----------QPSPDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 638 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----------~p~~~~~~~l~~~~~~~g~~~~A 706 (796)
.|+++.+ ..| +..++..+...|...|++++|...|+++.+...- ..+...|..+..++...|+.+.|
T Consensus 269 ~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 269 AYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 9999998 456 5778899999999999999999999998843110 01267899999999999999999
Q ss_pred HHHHHhC
Q 036290 707 KHVIEIM 713 (796)
Q Consensus 707 ~~~~~~~ 713 (796)
.+..++-
T Consensus 347 ~~~~~~~ 353 (365)
T 4eqf_A 347 QAANLGD 353 (365)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 9887764
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=1.3e-12 Score=130.52 Aligned_cols=250 Identities=9% Similarity=-0.019 Sum_probs=172.3
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCh----hhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHH
Q 036290 390 YMFCRCGAVEMAHSVFDNVSYKNI----TTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQ 465 (796)
Q Consensus 390 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 465 (796)
+-....|++..|+..++.....+. .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 344557888888888877665332 2445567788888888888876644 24566777788888888888888
Q ss_pred HHHHHHHHHHHhCCCC-CchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 036290 466 MVGQIHGAIIKTGFSS-CGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAG 544 (796)
Q Consensus 466 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 544 (796)
.|.+.++.+.+.+..| ++..+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 8888888888876544 566677778899999999999999998 457778888999999999999999999999876
Q ss_pred CCCCHHHH---HHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHH
Q 036290 545 EKPDEYIL---GTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVY 619 (796)
Q Consensus 545 ~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 619 (796)
.|+.... ..++..+...|++++|..+++++.+... .+...++.+..++.+.|++++|.+.+++.+.. .+..++
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3553211 1222333445777778877777776632 35556666666666666666666666544432 255556
Q ss_pred HHHHHHHHhcCChHH-HHHHHHHHHHCCCCCC
Q 036290 620 NTLIMAYAHHGLVSE-AMEIFDKMKLANLQPS 650 (796)
Q Consensus 620 ~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~ 650 (796)
..++..+...|+.++ +.++++++.+ +.|+
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~ 267 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKD--AHRS 267 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH--hCCC
Confidence 666666666665543 3455666555 4453
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.57 E-value=1.5e-13 Score=140.99 Aligned_cols=260 Identities=10% Similarity=0.049 Sum_probs=190.1
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHH
Q 036290 413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKS 492 (796)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 492 (796)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 87 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK----------- 87 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC-----------
Confidence 3456667777778888888888888877642 2244555555566666666666666666665543 22
Q ss_pred HHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHH------------H-H-
Q 036290 493 YVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEY-ILGTI------------L-N- 557 (796)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~l------------l-~- 557 (796)
+...+..+...+...|++++|.+.+++..+. .|+.. .+..+ + .
T Consensus 88 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 88 --------------------DIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3344555555666666666666666666544 22221 12111 0 3
Q ss_pred -HHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290 558 -SCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE 634 (796)
Q Consensus 558 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 634 (796)
.+...|+++.|...++.+.+.... +...+..+...|...|++++|.+.+++.+.. .+...|..+...+...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 377788999999999988887654 6788888999999999999999999665543 467889999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-------------chHHHHHHHHHHhc
Q 036290 635 AMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-------------PDCYGCLVDMLSRN 700 (796)
Q Consensus 635 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~ 700 (796)
|...++++.+ ..| +..++..+...+...|++++|.+.++++... .|+ ...+..+..++.+.
T Consensus 225 A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 225 ALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 9999999988 445 6778889999999999999999999998844 343 67888999999999
Q ss_pred CChHHHHHHHHhC
Q 036290 701 GYLEDAKHVIEIM 713 (796)
Q Consensus 701 g~~~~A~~~~~~~ 713 (796)
|++++|.+++++.
T Consensus 300 g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 300 NRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998865
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=9.8e-14 Score=136.79 Aligned_cols=231 Identities=12% Similarity=0.022 Sum_probs=189.0
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC--Cc----hhHH
Q 036290 514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN--TE----VYVA 587 (796)
Q Consensus 514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 587 (796)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|+++.|.+.++...+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456777788888899999999999888776 77788888888899999999999998888774322 12 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036290 588 SAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG 665 (796)
Q Consensus 588 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 665 (796)
..+...|...|++++|...+++.+.. |+ ...+...|++++|...++++.. ..| +...+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 88899999999999999999665553 33 2456677889999999999998 556 5567888888999999
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 036290 666 LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWAS 742 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (796)
++++|...++++... .|+ ...+..++.++.+.|++++|.+.+++. ...| +...|..+..++...|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999844 444 788899999999999999999999988 3344 5678999999999999999999999
Q ss_pred HHHHccC------CCCCcceEE
Q 036290 743 EKLLLLL------PKNDAAHVL 758 (796)
Q Consensus 743 ~~~~~~~------p~~~~~~~~ 758 (796)
+++++++ |++...+..
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHH
Confidence 9999998 776655433
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=3.9e-13 Score=133.79 Aligned_cols=237 Identities=14% Similarity=0.027 Sum_probs=167.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHH
Q 036290 517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE--VYVASAVIDAY 594 (796)
Q Consensus 517 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~ 594 (796)
+......+...|++++|+..|++..+.. +.+...+..+...+...|+++.|.+.++...+....++ ...+..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344556666677777777777766542 22333566666677777777777777777666332222 23467777778
Q ss_pred HhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 036290 595 AKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGC 671 (796)
Q Consensus 595 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~ 671 (796)
...|++++|.+.+++.+.. .+...|..+...|...|++++|.+.+++..+ ..| +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888655543 3667788888888888888888888888877 455 5555666662444455899999
Q ss_pred HHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCCH------HHHHHHHHHHHhcCChHH
Q 036290 672 LLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY---LEDAKHVIEIM----PFQPSP------TVYRSLLSGCRIHGNKEL 737 (796)
Q Consensus 672 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~~------~~~~~l~~~~~~~g~~~~ 737 (796)
..++++.+ ..|+ ...+..+..++...|+ +++|...++++ ...|+. .+|..+...+...|++++
T Consensus 163 ~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 163 SSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99988883 3555 6677778888888887 77788887776 222442 577888888999999999
Q ss_pred HHHHHHHHHccCCCCCcceEEe
Q 036290 738 GEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 738 A~~~~~~~~~~~p~~~~~~~~l 759 (796)
|...++++++++|+++.++-.+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHHh
Confidence 9999999999999998886555
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.3e-11 Score=133.76 Aligned_cols=378 Identities=10% Similarity=-0.025 Sum_probs=234.3
Q ss_pred CcchHHHHHHHHHhCCCccHHHHHHHHHHHc-----C--CCC-CcchHHHHHHHhcccCChHHHHHHHHHHHHh-----C
Q 036290 311 DVISWNTLFGGFSENKNPGQTASLFHKFILS-----G--SRP-NHVTFSILLRQCGKLLDLDLGLQLQCLALHC-----G 377 (796)
Q Consensus 311 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g 377 (796)
....||.+...+...|+.++|++.|++..+. + ..| ...+|+.+-..+...|++++|...++...+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987542 1 123 2457888889999999999999999887652 1
Q ss_pred -CC-CchhHHHHHHHHHHhc--CChHHHHHHHHhCCC--C-ChhhHHHHHHH---HHhcCCchHHHHHHHHHHhcCCccc
Q 036290 378 -FL-DEENVTSSLIYMFCRC--GAVEMAHSVFDNVSY--K-NITTWNELLSG---YCFNCCDADVLKTFCNIWESGVEVN 447 (796)
Q Consensus 378 -~~-~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~ 447 (796)
.. ....++..+..++... +++++|...|++..+ | +...+..+... +...++.++|++.+++..+. .|+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 11 1345565555555554 468999999998763 4 44455554444 44568889999999988774 343
Q ss_pred -HHHHHHHHHHhc----ccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHH
Q 036290 448 -GCTFFYVVETCC----RSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGA 519 (796)
Q Consensus 448 -~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 519 (796)
...+..+...+. ..++.++|.+.++...+.. +.+..++..+...|...|++++|.+.+++..+ .+..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 444444433333 3467788889988888775 55677778888888888888888888776654 23445555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290 520 MMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD 599 (796)
Q Consensus 520 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 599 (796)
+...|...+... .... ... ........+..+.|...++...+.... +...+..+...|...|+
T Consensus 287 lg~~y~~~~~~~---------~~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR-ENG------MYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---------hhHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 554443211100 0000 000 000011123456777777777776544 45567788899999999
Q ss_pred HHHHHHHHhccCCC-CChh----HHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036290 600 IKGARMAFDQSFNS-NDVI----VYNTLIM-AYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLL 673 (796)
Q Consensus 600 ~~~A~~~~~~~~~~-~~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 673 (796)
+++|...|++.+.. ++.. .+..+.. .+...|++++|+..|++..+ +.|+....... .+.+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHH
Confidence 99999999776543 3222 2222322 23467899999999999998 77765443322 3344556
Q ss_pred HHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHH
Q 036290 674 FKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPSPTVY 722 (796)
Q Consensus 674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~ 722 (796)
++..... .|+ +.+|..+..+|...|++++|++.+++. +..|+...|
T Consensus 419 ~~~~l~~---~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 419 AKMRLSK---NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHH---CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 6665533 454 889999999999999999999999988 234554444
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=1.9e-11 Score=121.44 Aligned_cols=230 Identities=10% Similarity=-0.088 Sum_probs=187.5
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCchhHHH
Q 036290 513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA----IGAYQRTKSIHPFVIKLGFNTEVYVAS 588 (796)
Q Consensus 513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 588 (796)
++.++..+...+...|++++|...|++..+. -+...+..+-..+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666777777888888888888887763 244566667777777 888888888888888776 677788
Q ss_pred HHHHHHHh----cCCHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036290 589 AVIDAYAK----CGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVSVMSA 660 (796)
Q Consensus 589 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 660 (796)
.+...|.. .+++++|.+.|++.+...+...+..+...|.. .+++++|.+.|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 88888888 99999999999877777788899999999999 999999999999999865 45667777777
Q ss_pred Hhc----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 036290 661 CSH----KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR----NGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRI- 731 (796)
Q Consensus 661 ~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 731 (796)
+.. .+++++|...+++..+. + ++..+..+..+|.. .+++++|.+.+++.-...+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 777 89999999999998844 2 46778889999999 99999999999987222336788888888988
Q ss_pred ---cCChHHHHHHHHHHHccCCCCCcc
Q 036290 732 ---HGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 732 ---~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
.++.++|...++++.+..|+++..
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999999876543
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=2.9e-12 Score=125.73 Aligned_cols=208 Identities=9% Similarity=0.002 Sum_probs=142.0
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290 514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA 593 (796)
Q Consensus 514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 593 (796)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|.+.++.+.+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------------
Confidence 4456666667777777777777777766542 22344444444444444444444444444433221
Q ss_pred HHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCL 672 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~ 672 (796)
.+...+..+...|...|++++|.++++++.+.+..| +...+..+...+...|++++|..
T Consensus 103 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 103 --------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 245566667777777777777777777776633445 44566777778888888888888
Q ss_pred HHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290 673 LFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 673 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 749 (796)
.++++... .|+ ...+..++.++...|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++++..
T Consensus 163 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88887743 344 677788888888888888888888887 3333 55677788888888899999999999999999
Q ss_pred CCCCcceEE
Q 036290 750 PKNDAAHVL 758 (796)
Q Consensus 750 p~~~~~~~~ 758 (796)
|+++.....
T Consensus 240 p~~~~~~~~ 248 (252)
T 2ho1_A 240 PGSLEYQEF 248 (252)
T ss_dssp TTSHHHHHH
T ss_pred CCCHHHHHH
Confidence 988766543
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=3.5e-12 Score=122.58 Aligned_cols=207 Identities=14% Similarity=0.078 Sum_probs=141.7
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290 514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA 593 (796)
Q Consensus 514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 593 (796)
...|..+...+...|++++|.+.|++..+.. +.+.. .+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNEL-----------------------------------AWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchH-----------------------------------HHHHHHHH
Confidence 4455555566666666666666666655432 22233 44444555
Q ss_pred HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHH-GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDK 669 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 669 (796)
|...|++++|.+.+++.+.. .+...+..+...+... |++++|...++++.+.+..| +...+..+...+...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555433321 3555667777777888 88888888888887733334 34567777788888888888
Q ss_pred HHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290 670 GCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ--PSPTVYRSLLSGCRIHGNKELGEWASEKL 745 (796)
Q Consensus 670 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 745 (796)
|...++++.+. .|+ ...+..++.++.+.|++++|.+.++++ ... .+...+..+...+...|+.+.|...++.+
T Consensus 132 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 132 AEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 88888888743 444 677888888888899999999888887 333 35566777777788889999999999999
Q ss_pred HccCCCCCcceEEe
Q 036290 746 LLLLPKNDAAHVLL 759 (796)
Q Consensus 746 ~~~~p~~~~~~~~l 759 (796)
.+.+|+++.....|
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 88999888765544
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=3.3e-12 Score=132.06 Aligned_cols=242 Identities=9% Similarity=-0.007 Sum_probs=203.4
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290 513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA-YQRTKSIHPFVIKLGFNTEVYVASAVI 591 (796)
Q Consensus 513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 591 (796)
+...|..+...+.+.|++++|+..+++..... +-+...|..+-..+...|+ +++|...++.+.+.... +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 34567778888889999999999999988763 3356777888888888996 99999999999998766 778899999
Q ss_pred HHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCCH
Q 036290 592 DAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSH-KGLV 667 (796)
Q Consensus 592 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~-~g~~ 667 (796)
.++...|++++|+..|++.+.. .+...|..+..++...|++++|+..++++.+ +.| +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999777654 4888999999999999999999999999999 667 67789989888888 6665
Q ss_pred HHH-----HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-----
Q 036290 668 DKG-----CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG--YLEDAKHVIEIMPFQP-SPTVYRSLLSGCRIHG----- 733 (796)
Q Consensus 668 ~~A-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g----- 733 (796)
++| +..++++. .+.|+ ...|..+..++.+.| ++++|.+.++++...| +...+..++.++.+.|
T Consensus 252 ~eA~~~~el~~~~~Al---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 58888887 45777 778889999999988 6899999998885555 4577888998988764
Q ss_pred ---C-hHHHHHHHHHH-HccCCCCCcceEEecC
Q 036290 734 ---N-KELGEWASEKL-LLLLPKNDAAHVLLSK 761 (796)
Q Consensus 734 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~ 761 (796)
+ .++|+++++++ .+++|.....|..++.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 2 58999999999 9999999999887765
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=5.2e-12 Score=125.72 Aligned_cols=224 Identities=9% Similarity=-0.080 Sum_probs=163.3
Q ss_pred cCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036290 527 QGHNHEAVTIFHSLVEAGEK---PDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGA 603 (796)
Q Consensus 527 ~~~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 603 (796)
.|++++|+..|+++.+.... .+..++..+...+...|+++.|...++.+.+.... +...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777665321 13455666677777778888888888777776543 567777788888888888888
Q ss_pred HHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290 604 RMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY 681 (796)
Q Consensus 604 ~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 681 (796)
.+.+++.+.. .+...+..+...|...|++++|...++++.+ ..|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 8888665542 3677888888888889999999999988888 5565555555555566778899999998877744
Q ss_pred CCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 682 GMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 682 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
..++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 22333333 4777777888888888888876 33332 4677888888888999999999999999998877654
Q ss_pred e
Q 036290 756 H 756 (796)
Q Consensus 756 ~ 756 (796)
+
T Consensus 252 ~ 252 (275)
T 1xnf_A 252 H 252 (275)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=1.2e-11 Score=132.31 Aligned_cols=341 Identities=10% Similarity=0.018 Sum_probs=212.9
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhcC-----CchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcH---HHHHHH
Q 036290 399 EMAHSVFDNVSYKNITTWNELLSGYCFNC-----CDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQ---QMVGQI 470 (796)
Q Consensus 399 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~ 470 (796)
++|...|++..+.+...+..+...+...+ ++++|+.+|++..+.|... .+..+-..+...+.. ..+.+.
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHH
Confidence 56666665555444445555555444443 5567777777776655433 222333333332222 234444
Q ss_pred HHHHHHhCCCCCchhHhHHHHHHHhcCCcch----HHHHHhcCCCCCHhhHHHHHHHHHHcC---ChhHHHHHHHHHHHc
Q 036290 471 HGAIIKTGFSSCGYICSSLIKSYVNFGQLDN----SFEFSNGAERLDMASWGAMMSALVHQG---HNHEAVTIFHSLVEA 543 (796)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~ 543 (796)
+....+.| ++.....|...|...+.++. +..+++.....++..+..+...|...| +.++|+..|++..+.
T Consensus 132 ~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 132 ISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 44444444 35566677777777775444 445566666666668888888888888 889999999999888
Q ss_pred CCCCCHHHHHHHHHHHhcc----CchHHHHHHHHHHHHhCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHhccCCCCCh
Q 036290 544 GEKPDEYILGTILNSCAAI----GAYQRTKSIHPFVIKLGFNTEVYVASAVIDA-Y--AKCGDIKGARMAFDQSFNSNDV 616 (796)
Q Consensus 544 g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~ 616 (796)
| .++...+..+-..|... ++.++|.+.++... . -+...+..+..+ | ...+++++|.+.|++.....+.
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~ 283 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQP 283 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCH
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCH
Confidence 7 55555545555556554 68899999998877 3 356666777766 4 5689999999999888877888
Q ss_pred hHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCc
Q 036290 617 IVYNTLIMAYAHHG-----LVSEAMEIFDKMKLANLQPSQATFVSVMSACSH----KGLVDKGCLLFKSMDSQYGMQPSP 687 (796)
Q Consensus 617 ~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~ 687 (796)
..+..|...|. .| ++++|.+.|++.. .| +...+..|...|.. ..++++|..+|++..+. | ++
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~ 354 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QN 354 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CT
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hH
Confidence 88888888887 45 8999999998887 32 55566666666655 34899999999988743 3 35
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290 688 DCYGCLVDMLSR----NGYLEDAKHVIEIMPFQPSPTVYRSL--LSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 688 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 759 (796)
.....|..+|.. ..+.++|..+++......+...-..+ +......++..+|..+.++..+..|.....-+.|
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 432 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQL 432 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC----CCC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence 566677777764 45899999999987323333332222 2223344577788888888777655543333333
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=1.4e-12 Score=127.19 Aligned_cols=201 Identities=11% Similarity=0.080 Sum_probs=141.6
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCC
Q 036290 554 TILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGL 631 (796)
Q Consensus 554 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~ 631 (796)
.+...+...|+++.|...++.+.+.... +...+..+...|...|++++|.+.+++.+.. .+...+..+...+...|+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp --------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 3333344444444444444444432222 3445555566666666666666666444332 356777788888888999
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHH
Q 036290 632 VSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHV 709 (796)
Q Consensus 632 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 709 (796)
+++|.+.++++.+. .| +...+..+...+...|++++|..+++++... .| +...+..++.++.+.|++++|.+.
T Consensus 107 ~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 107 YKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998884 34 6677888888899999999999999998844 34 477888899999999999999999
Q ss_pred HHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 710 IEIM-PFQ-PSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 710 ~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
++++ ... .+..+|..+..++...|++++|...++++++.+|+++.++..++
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 9887 333 35678899999999999999999999999999999888765543
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=5.8e-12 Score=120.07 Aligned_cols=193 Identities=15% Similarity=0.106 Sum_probs=97.2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290 514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA 593 (796)
Q Consensus 514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 593 (796)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++...+..+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------------ 71 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR------------ 71 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------
Confidence 3344555555555566666666665555431 223333444444444444444444444444443322
Q ss_pred HHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH-----------GLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC 661 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~ 661 (796)
+...+..+...+... |++++|+..+++..+ +.| +...+..+...+
T Consensus 72 ---------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~ 128 (217)
T 2pl2_A 72 ---------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVY 128 (217)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 333444444444444 666666666666666 445 344555566666
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 036290 662 SHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGE 739 (796)
Q Consensus 662 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 739 (796)
...|++++|+..|+++.+. . .++..+..+..+|...|++++|.+.+++. ...| +...+..+...+...|++++|+
T Consensus 129 ~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred HHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 6666666666666666644 3 45566666666666666666666666665 3333 3455666666666666666666
Q ss_pred HHHHHH
Q 036290 740 WASEKL 745 (796)
Q Consensus 740 ~~~~~~ 745 (796)
..++++
T Consensus 206 ~~~~~~ 211 (217)
T 2pl2_A 206 RAAALE 211 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 666554
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.39 E-value=1e-11 Score=118.38 Aligned_cols=195 Identities=12% Similarity=0.021 Sum_probs=129.3
Q ss_pred CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290 480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL 556 (796)
Q Consensus 480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 556 (796)
|++...+..+...+...|++++|...|+...+ .+...|..+...+.+.|++++|...|++..+.. +.+...+..+-
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 67888999999999999999999999998765 467789999999999999999999999998763 33456666666
Q ss_pred HHHhcc-----------CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHH
Q 036290 557 NSCAAI-----------GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMA 625 (796)
Q Consensus 557 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~ 625 (796)
..+... |++++|...++...+..+ .+...|..+...
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P---------------------------------~~~~~~~~lg~~ 127 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP---------------------------------RYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT---------------------------------TCHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc---------------------------------ccHHHHHHHHHH
Confidence 666665 444444444444443322 245556666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChH
Q 036290 626 YAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLE 704 (796)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 704 (796)
+...|++++|+..|++..+.. .+...+..+..++...|++++|+..|+++.+ ..|+ ...+..+..++.+.|+++
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC-----
T ss_pred HHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHH
Confidence 777777777777777777654 5566666677777777777777777777763 3454 566667777777777777
Q ss_pred HHHHHHHhC
Q 036290 705 DAKHVIEIM 713 (796)
Q Consensus 705 ~A~~~~~~~ 713 (796)
+|++.+++.
T Consensus 203 ~A~~~~~~~ 211 (217)
T 2pl2_A 203 EAARAAALE 211 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 777776654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=7.5e-11 Score=115.55 Aligned_cols=194 Identities=8% Similarity=-0.058 Sum_probs=127.9
Q ss_pred chhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036290 483 GYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSC 559 (796)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 559 (796)
...+..+...+...|++++|.+.++.+.+ .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788889999999999999999988764 467788999999999999999999999998763 33555666666666
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036290 560 AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIF 639 (796)
Q Consensus 560 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 639 (796)
...|++++|.++++.+.+.+..| .+...+..+...+...|++++|.+.+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~-------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYP-------------------------------ERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCT-------------------------------THHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCc-------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666665554421112 12334445555555566666666666
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 640 DKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 640 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+++.+. .| +...+..+...+...|++++|...++++. ...|+ ...+..+..++.+.|++++|.+.++++
T Consensus 165 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 165 EKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFA---QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 665552 23 34555556666666666666666666655 23333 445555666666666666666666655
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=3e-11 Score=118.82 Aligned_cols=207 Identities=7% Similarity=-0.021 Sum_probs=109.8
Q ss_pred hcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--C----C----HhhHHHHHHHHHHc
Q 036290 458 CCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--L----D----MASWGAMMSALVHQ 527 (796)
Q Consensus 458 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~ 527 (796)
+...|++++|...++.+.+.. .+...+..+..+|...|++++|.+.++...+ | + ...|..+...+...
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 333344444444444443333 3333444444444444444444444433322 1 0 34555566666666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036290 528 GHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAF 607 (796)
Q Consensus 528 ~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 607 (796)
|++++|...|++.... .|+. ..+...|+++.|...++.+.....
T Consensus 93 ~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~--------------------------- 136 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP--------------------------- 136 (258)
T ss_dssp TCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH---------------------------
T ss_pred ccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc---------------------------
Confidence 6677777666666554 2332 123333444555554444443211
Q ss_pred hccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 036290 608 DQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS 686 (796)
Q Consensus 608 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 686 (796)
.+...+..+...+...|++++|...+++..+ ..| +..++..+...+...|++++|...++++.+. .|+
T Consensus 137 ------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~ 205 (258)
T 3uq3_A 137 ------EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPN 205 (258)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred ------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHH
Confidence 1334455566666666666666666666665 233 4555666666666677777777777666632 344
Q ss_pred -chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 687 -PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 687 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
...+..+..++.+.|++++|.+.+++.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556666667777777777777666665
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.37 E-value=1e-11 Score=123.51 Aligned_cols=219 Identities=9% Similarity=-0.097 Sum_probs=145.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036290 515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAY 594 (796)
Q Consensus 515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 594 (796)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++.+.+.... +...+..+..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHH
Confidence 345555666666666777777776666542 334566666666777777777777777776665433 456677777778
Q ss_pred HhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036290 595 AKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLL 673 (796)
Q Consensus 595 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 673 (796)
...|++++|...+++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHH
Confidence 8888888888777655443 333334444445566788999999998777642 2343333 466677778888889988
Q ss_pred HHHhHhhcCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036290 674 FKSMDSQYGMQPS-----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWAS 742 (796)
Q Consensus 674 ~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (796)
++.+. ...|+ ...+..++.++.+.|++++|.+.++++ ...|+. +.....++...|++++|++.+
T Consensus 200 ~~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADA---TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHC---CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHh---cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 88876 33442 577888899999999999999999888 556643 223355666778888887765
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=3.7e-11 Score=119.32 Aligned_cols=239 Identities=9% Similarity=-0.018 Sum_probs=177.9
Q ss_pred HhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHh
Q 036290 486 CSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD--EYILGTILNSCA 560 (796)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 560 (796)
.......+...|++++|...|+...+ .+...+..+...+...|++++|...+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455566666677777666665543 2444677777788888888888888888876432222 234777888888
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHH
Q 036290 561 AIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEI 638 (796)
Q Consensus 561 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 638 (796)
..|+++.|...++...+.... +...+..+...|...|++++|.+.+++.+.. .+...|..+...+...+++++|.+.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999888886554 5678899999999999999999999877765 3667777777344445699999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCC---HHHHHHHHHHhHhhcCCCCCc------hHHHHHHHHHHhcCChHHHHH
Q 036290 639 FDKMKLANLQP-SQATFVSVMSACSHKGL---VDKGCLLFKSMDSQYGMQPSP------DCYGCLVDMLSRNGYLEDAKH 708 (796)
Q Consensus 639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~ 708 (796)
++++.+ ..| +...+..+...+...|+ +++|...++++.+...-.|+. .+|..+...|.+.|++++|.+
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998 566 46677777788888887 888999998887554334542 578889999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHH
Q 036290 709 VIEIM-PFQPS-PTVYRSLLS 727 (796)
Q Consensus 709 ~~~~~-~~~p~-~~~~~~l~~ 727 (796)
.+++. ...|+ ...+..+..
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHhcCccHHHHHHHhhh
Confidence 99988 45564 444444433
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=1e-10 Score=125.06 Aligned_cols=147 Identities=14% Similarity=0.065 Sum_probs=62.6
Q ss_pred hhcCCCH---HHHHHHHhhcCCCCcchHHHHHHHHHhCC-----CccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCC
Q 036290 291 YIKSSGM---DYAFKVFERMADKDVISWNTLFGGFSENK-----NPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLD 362 (796)
Q Consensus 291 ~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 362 (796)
|...|+. ++|...|++..+.+...+..+...+...+ +.++|+..|++..+.|... .+..+-..+...+.
T Consensus 45 y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~ 121 (452)
T 3e4b_A 45 QVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPH 121 (452)
T ss_dssp --------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGG
T ss_pred HHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCC
Confidence 3344555 66666666665555555555555444444 5567777777776655322 33333333333222
Q ss_pred h---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----hHHHHHHHHhCCCCChhhHHHHHHHHHhcC---CchHH
Q 036290 363 L---DLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGA----VEMAHSVFDNVSYKNITTWNELLSGYCFNC---CDADV 432 (796)
Q Consensus 363 ~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a 432 (796)
. ..+.+.+....+.|. ......|...|...+. .+.+..+++.....+...+..+...|...| +.++|
T Consensus 122 ~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A 198 (452)
T 3e4b_A 122 SFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAEL 198 (452)
T ss_dssp GCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHH
Confidence 2 233344444444442 3334445555555553 333444455555555556666666666666 66666
Q ss_pred HHHHHHHHhcC
Q 036290 433 LKTFCNIWESG 443 (796)
Q Consensus 433 ~~~~~~m~~~g 443 (796)
+..|++..+.|
T Consensus 199 ~~~~~~aa~~g 209 (452)
T 3e4b_A 199 LKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
Confidence 66666665554
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=8.9e-12 Score=115.48 Aligned_cols=170 Identities=19% Similarity=0.146 Sum_probs=144.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036290 583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMS 659 (796)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 659 (796)
+..+|..+...|...|++++|++.|++.+.. .+...|..+...|...|++++|...+++... ..| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 5667888888888999999999998776653 4778899999999999999999999999988 445 5566777778
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 036290 660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKE 736 (796)
Q Consensus 660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 736 (796)
.+...++++.|...+++... ..|+ ...+..+..++.+.|++++|++.+++. ...| +..+|..+..++.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 88999999999999999884 3555 778889999999999999999999988 4455 5678999999999999999
Q ss_pred HHHHHHHHHHccCCCCCcceE
Q 036290 737 LGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 737 ~A~~~~~~~~~~~p~~~~~~~ 757 (796)
+|+..++++++++|+++..+.
T Consensus 159 ~A~~~~~~al~~~p~~a~~~l 179 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKAKYEL 179 (184)
T ss_dssp HHHHHHHHHHHTTHHHHHHCS
T ss_pred HHHHHHHHHHhCCccCHHHHH
Confidence 999999999999998766543
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.32 E-value=1.4e-10 Score=111.19 Aligned_cols=203 Identities=12% Similarity=0.005 Sum_probs=131.2
Q ss_pred CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290 480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL 556 (796)
Q Consensus 480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 556 (796)
+.+...+..+...+...|++++|.+.++.+.+ .+...|..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 33567788899999999999999999987654 457788899999999999999999999987753 33455566666
Q ss_pred HHHhcc-CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHH
Q 036290 557 NSCAAI-GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEA 635 (796)
Q Consensus 557 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 635 (796)
..+... |+++.|...++.+.+.+..|+ +...+..+...+...|++++|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPT-------------------------------PYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSC-------------------------------HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcc-------------------------------hHHHHHHHHHHHHHcCCHHHH
Confidence 666666 666666666665554211111 234445555555566666666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCChHHHHHHHHh
Q 036290 636 MEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP--SPDCYGCLVDMLSRNGYLEDAKHVIEI 712 (796)
Q Consensus 636 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (796)
...++++.+ ..| +...+..+...+...|++++|..+++++... .| +...+..+...+...|+.++|..+++.
T Consensus 133 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 133 EAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR---VEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 666666555 233 3455555666666666666666666666532 23 344555555556666666666666665
Q ss_pred C-CCCCCH
Q 036290 713 M-PFQPSP 719 (796)
Q Consensus 713 ~-~~~p~~ 719 (796)
+ ...|+.
T Consensus 208 ~~~~~p~~ 215 (225)
T 2vq2_A 208 LQANFPYS 215 (225)
T ss_dssp HHHHCTTC
T ss_pred HHHhCCCC
Confidence 5 234443
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.31 E-value=4.2e-10 Score=111.70 Aligned_cols=218 Identities=10% Similarity=-0.044 Sum_probs=164.1
Q ss_pred chhHhHHHHHHHhcCCcchHHHHHhcCCCC-CHhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036290 483 GYICSSLIKSYVNFGQLDNSFEFSNGAERL-DMASWGAMMSALVH----QGHNHEAVTIFHSLVEAGEKPDEYILGTILN 557 (796)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 557 (796)
+..+..+...|...|++++|.+.|+...++ +...+..+...|.. .+++++|...|++..+.+ +...+..+-.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 344455555666666666666666554432 45566667777777 788888888888877765 5666777777
Q ss_pred HHhc----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCCCCChhHHHHHHHHHHh-
Q 036290 558 SCAA----IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK----CGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH- 628 (796)
Q Consensus 558 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~- 628 (796)
.+.. .+++++|...++...+.+ +...+..+...|.. .+++++|.+.+++.+...+...+..+...|..
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence 7777 888888888888877765 66777788888888 88888888888777777777788888888887
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh--
Q 036290 629 ---HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH----KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR-- 699 (796)
Q Consensus 629 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 699 (796)
.+++++|...|++..+.+ +...+..+...+.. .+++++|...+++..+. .| ...+..+..+|..
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~-~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL---EN-GGGCFNLGAMQYNGE 232 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT---TC-HHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC---CC-HHHHHHHHHHHHcCC
Confidence 889999999999888753 45667777777877 88999999999888743 22 6677778888888
Q ss_pred --cCChHHHHHHHHhC
Q 036290 700 --NGYLEDAKHVIEIM 713 (796)
Q Consensus 700 --~g~~~~A~~~~~~~ 713 (796)
.|++++|.+.+++.
T Consensus 233 ~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKG 248 (273)
T ss_dssp SSSCCSTTHHHHHHHH
T ss_pred CcccCHHHHHHHHHHH
Confidence 88999999888876
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=2.6e-11 Score=128.38 Aligned_cols=295 Identities=14% Similarity=0.025 Sum_probs=171.9
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcc-c--HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHH
Q 036290 413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEV-N--GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSL 489 (796)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 489 (796)
...+......+...|++++|...|++..+.+... . ...+..+...+...|+++.|...++...+..-
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------- 78 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR---------- 78 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------
Confidence 3445556667777788888888877777642111 0 23455555566666666666666665543210
Q ss_pred HHHHHhcCCcchHHHHHhcCCC--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcc
Q 036290 490 IKSYVNFGQLDNSFEFSNGAER--LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGE-KPD----EYILGTILNSCAAI 562 (796)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~ 562 (796)
.... .....+..+...+...|++++|...+++..+... .++ ..++..+...+...
T Consensus 79 ------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 79 ------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp ------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 0000 0122344444555555555555555554432100 011 22444555555556
Q ss_pred Cc--------------------hHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----
Q 036290 563 GA--------------------YQRTKSIHPFVIKL----GFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---- 613 (796)
Q Consensus 563 ~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 613 (796)
|+ ++.|...+....+. +.. .....+..+...|...|++++|...+++.+..
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 66 66666665554431 111 12335566677777777777777777554432
Q ss_pred CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCC
Q 036290 614 ND----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQ 684 (796)
Q Consensus 614 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 684 (796)
++ ...+..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++......-.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 11 236777778888888888888888887652 1111 14466777788888899999988888876432112
Q ss_pred CC----chHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCh
Q 036290 685 PS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-------PFQP-SPTVYRSLLSGCRIHGNK 735 (796)
Q Consensus 685 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~ 735 (796)
++ ..++..+..+|.+.|++++|.+.+++. +..+ ...++..+...+...|+.
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 22 556778888888899999988888776 1111 234566677777777765
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=4.8e-10 Score=113.36 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=170.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------ccCch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290 531 HEAVTIFHSLVEAGEKPDEYILGTILNSCA-------AIGAY-------QRTKSIHPFVIKLGFNTEVYVASAVIDAYAK 596 (796)
Q Consensus 531 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 596 (796)
++|...|++..... +-+...|..+...+. ..|++ ++|..+++...+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888876652 445566666666554 34765 8888888888873222356688899999999
Q ss_pred cCCHHHHHHHHhccCCC-C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hccCCHHHHH
Q 036290 597 CGDIKGARMAFDQSFNS-N-DVI-VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC-SHKGLVDKGC 671 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~-~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~-~~~g~~~~A~ 671 (796)
.|++++|.++|++.+.. | +.. .|..++..+.+.|++++|..+|++..+. .| +...|....... ...|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999877765 3 344 8999999999999999999999999984 44 444454433332 2379999999
Q ss_pred HHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036290 672 LLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-P---FQP--SPTVYRSLLSGCRIHGNKELGEWASEK 744 (796)
Q Consensus 672 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (796)
.+|+++.+. .|+ +..|..++..+.+.|++++|..+|++. . +.| ....|..++..+.+.|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999844 454 788899999999999999999999998 2 355 356899999999999999999999999
Q ss_pred HHccCCCCCcc
Q 036290 745 LLLLLPKNDAA 755 (796)
Q Consensus 745 ~~~~~p~~~~~ 755 (796)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999987654
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.28 E-value=2.4e-08 Score=110.22 Aligned_cols=418 Identities=10% Similarity=0.031 Sum_probs=263.8
Q ss_pred CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCC---hHHHHHHHHHHHHhC-CCCchhHH
Q 036290 310 KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLD---LDLGLQLQCLALHCG-FLDEENVT 385 (796)
Q Consensus 310 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 385 (796)
.|..+|..+|..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+.++|+...... ..|+...|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 37888999999988888999999999998876 23344455666666677777 888888888887754 24777788
Q ss_pred HHHHHHHHhcCCh--------HHHHHHHHhCC------CC-ChhhHHHHHHHHHh---------cCCchHHHHHHHHHHh
Q 036290 386 SSLIYMFCRCGAV--------EMAHSVFDNVS------YK-NITTWNELLSGYCF---------NCCDADVLKTFCNIWE 441 (796)
Q Consensus 386 ~~ll~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~ 441 (796)
...+....+.++. +...++|+... ++ +...|...+.-... .++.+.+..+|+....
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777766655543 22345665422 22 33566666654332 2345667777777764
Q ss_pred cCCcccHHHHH---HHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHh-------cCCC
Q 036290 442 SGVEVNGCTFF---YVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSN-------GAER 511 (796)
Q Consensus 442 ~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~~~~ 511 (796)
.....-..+|. .+...... ..+.+++.+.. ..++.|...+. .+..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~----~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQ----LTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCT----TTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCC
T ss_pred CccHHHHHHHHHHHHHHHhcCc----chHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhh
Confidence 22221223332 22222100 01111111100 01111111111 0100
Q ss_pred --------------C--------CHhhHHHHHHHHHHcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290 512 --------------L--------DMASWGAMMSALVHQG-------HNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI 562 (796)
Q Consensus 512 --------------~--------~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 562 (796)
| ....|...+.---..+ ..+.+..+|++.... ++-....|.....-+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhc
Confidence 0 0123444443322222 123345667777654 344667777777777778
Q ss_pred CchHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC------------C------------Chh
Q 036290 563 GAYQRTK-SIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS------------N------------DVI 617 (796)
Q Consensus 563 ~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~------------~~~ 617 (796)
|+.+.|. ++++...... +.+...+...+....+.|+++.|.++|+..+.. | ...
T Consensus 357 ~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888886 8998887644 346667777888888899999999988766542 2 123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH-KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDM 696 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 696 (796)
.|...+....+.|..+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|+...+.+ .-++..+...++.
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~f 513 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHH
Confidence 6888888888899999999999999885101123344333222223 356999999999999663 2346667788888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290 697 LSRNGYLEDAKHVIEIM-PFQP----SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
....|+.+.|..+|++. ...| ....|...+.--.+.|+.+.+..+.+++.+..|+++..-.
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 88999999999999997 3333 2367899999889999999999999999999998765443
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=5.4e-11 Score=115.75 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036290 515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAY 594 (796)
Q Consensus 515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 594 (796)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|.+.++.+.+.... +...+..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHH
Confidence 344445555555666666666666655432 334555555566666666666666666666655432 455666667777
Q ss_pred HhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 036290 595 AKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGC 671 (796)
Q Consensus 595 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~ 671 (796)
...|++++|.+.+++.+.. .+...+..+...+...|++++|...++++.+ ..| +...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777544432 3566777777788888888888888888777 334 5666777777888888888888
Q ss_pred HHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 036290 672 LLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRS 724 (796)
Q Consensus 672 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 724 (796)
..++++... .|+ ..++..++.++.+.|++++|.+.++++ ...|+ ...+..
T Consensus 180 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 180 SQFAAVTEQ---DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 888887743 343 667778888888888888888888877 34443 334433
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.26 E-value=2.2e-10 Score=118.29 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=164.7
Q ss_pred HhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036290 486 CSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGH-NHEAVTIFHSLVEAGEKPDEYILGTILNSCAA 561 (796)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 561 (796)
+..+...+...|++++|++.++.... .+...|+.+...+...|+ +++|+..|++..... +-+...|..+-.++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 33444445555555555555554432 245556666666666665 777777777766552 3345566666666677
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHh-cCChHHH---
Q 036290 562 IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAH-HGLVSEA--- 635 (796)
Q Consensus 562 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~A--- 635 (796)
.|+++.|...++.+.+.... +...|..+..++.+.|++++|+..+++.+.. .+...|+.+..++.. .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~ 257 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 257 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence 77777777777777766554 6677777788888888888888888666653 377888888888888 6665777
Q ss_pred --HHHHHHHHHCCCCC-CHHHHHHHHHHHhccC--CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC--------
Q 036290 636 --MEIFDKMKLANLQP-SQATFVSVMSACSHKG--LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG-------- 701 (796)
Q Consensus 636 --~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-------- 701 (796)
+..+++..+ +.| +...|..+...+...| ++++|++.++++ ...|+ ...+..++.+|.+.|
T Consensus 258 ~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~----~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 258 REVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL----QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH----TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh----ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 588888888 667 5667888888888888 689999988877 23455 778889999998874
Q ss_pred -ChHHHHHHHHhC--CCCCCH-HHHHHHHHHHH
Q 036290 702 -YLEDAKHVIEIM--PFQPSP-TVYRSLLSGCR 730 (796)
Q Consensus 702 -~~~~A~~~~~~~--~~~p~~-~~~~~l~~~~~ 730 (796)
..++|+++++++ ...|.. ..|..+...+.
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258999999998 566754 45666666554
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.26 E-value=3.6e-11 Score=127.64 Aligned_cols=271 Identities=14% Similarity=0.067 Sum_probs=170.7
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCc----hhHhHHHHHHHhcCCcchHHHHHhcCCC---------CCHh
Q 036290 449 CTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCG----YICSSLIKSYVNFGQLDNSFEFSNGAER---------LDMA 515 (796)
Q Consensus 449 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~ 515 (796)
..+..+-..+...|+++.|...++.+.+.+ +.+. .++..+...|...|++++|...+++..+ ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344445556677788888888888777764 2222 3555666666666666666666554432 1223
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchhHHHHHHHHH
Q 036290 516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLG-FNTEVYVASAVIDAY 594 (796)
Q Consensus 516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~ 594 (796)
.+..+...|...|++++|...+++..+... +.+ .......+..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHH
Confidence 445555555556666666665555432200 000 001122344444555
Q ss_pred HhcCC-----------------HHHHHHHHhccCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-
Q 036290 595 AKCGD-----------------IKGARMAFDQSFNS--------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ- 648 (796)
Q Consensus 595 ~~~g~-----------------~~~A~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 648 (796)
...|+ +++|.+.+++.+.. .....+..+...|...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55555554332221 12346677778888888888888888887662110
Q ss_pred CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CC---C
Q 036290 649 PS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF---Q 716 (796)
Q Consensus 649 p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~ 716 (796)
++ ..++..+...+...|++++|...++++.....-..+ ..++..+..++...|++++|.+.+++. .. .
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 236777888899999999999999887743211111 567888999999999999999999887 11 1
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 717 PS----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 717 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
++ ..++..+...+...|++++|.+.+++++++.++
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 12 357788888999999999999999999998764
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.25 E-value=1.9e-10 Score=118.04 Aligned_cols=135 Identities=13% Similarity=-0.005 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----c
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLAN----LQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----P 687 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~ 687 (796)
..+..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|...+++......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 355666677777777777777777765421 111 1235777778888889999999988887643211122 5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 688 DCYGCLVDMLSRNGYLEDAKHVIEIM-P---FQPS----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
.++..+..++...|++++|.+.+++. . ..++ ..++..+...+...|++++|...+++++++.++
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 66778888999999999999998876 1 1112 347788888999999999999999999988765
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=2.8e-10 Score=105.25 Aligned_cols=172 Identities=17% Similarity=0.082 Sum_probs=146.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 036290 584 VYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSA 660 (796)
Q Consensus 584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 660 (796)
...+..+...+...|++++|...+++.+.. .+...+..+...+...|++++|...++++.+. .| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 345666778889999999999999776665 37788899999999999999999999999884 45 67778888899
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 036290 661 CSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELG 738 (796)
Q Consensus 661 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 738 (796)
+...|++++|.+.++++... .+.+...+..++.++...|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999844 2334778889999999999999999999987 33 33567899999999999999999
Q ss_pred HHHHHHHHccCCCCCcceEEe
Q 036290 739 EWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 739 ~~~~~~~~~~~p~~~~~~~~l 759 (796)
...++++++.+|+++....++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T 3as5_A 164 LPHFKKANELDEGASVELALV 184 (186)
T ss_dssp HHHHHHHHHHHHCCCGGGGGS
T ss_pred HHHHHHHHHcCCCchhhHhhc
Confidence 999999999999888765443
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.21 E-value=1.3e-10 Score=123.33 Aligned_cols=267 Identities=12% Similarity=0.009 Sum_probs=179.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccH----HHHHHHHHHhcccCcHHHHHHHHHHHHHh----C-CCCCchh
Q 036290 415 TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNG----CTFFYVVETCCRSENQQMVGQIHGAIIKT----G-FSSCGYI 485 (796)
Q Consensus 415 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 485 (796)
.+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|+++.|...++...+. + .+.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4555667889999999999999999886322 22 46777888889999999999999988764 1 1234567
Q ss_pred HhHHHHHHHhcCCcchHHHHHhcCCCC---------CHhhHHHHHHHHHHcCC-----------------hhHHHHHHHH
Q 036290 486 CSSLIKSYVNFGQLDNSFEFSNGAERL---------DMASWGAMMSALVHQGH-----------------NHEAVTIFHS 539 (796)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~A~~~~~~ 539 (796)
+..+...|...|++++|...+++..+. ....+..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888999999999999999988765431 22355566666666666 5555555554
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----C
Q 036290 540 LVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGF-NTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----N 614 (796)
Q Consensus 540 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~ 614 (796)
..+.. ...+- ......+..+...|...|++++|.+.+++.+.. +
T Consensus 209 al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 209 NLKLM-------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 42210 00000 011234455556666666666666666444332 1
Q ss_pred C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 036290 615 D----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-P----SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP 685 (796)
Q Consensus 615 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 685 (796)
+ ...+..+...|...|++++|...+++..+.... . ...++..+...+...|++++|..++++......-.+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 236677777788888888888888777652110 0 135677777888889999999998888764311111
Q ss_pred C----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 686 S----PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 686 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+ ..++..+..+|.+.|++++|.+.+++.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 457778888999999999999988876
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=4.3e-10 Score=117.92 Aligned_cols=231 Identities=8% Similarity=-0.027 Sum_probs=169.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHhC--CC----CchhHHH
Q 036290 520 MMSALVHQGHNHEAVTIFHSLVEAG-EKPD----EYILGTILNSCAAIGAYQRTKSIHPFVIKLG--FN----TEVYVAS 588 (796)
Q Consensus 520 li~~~~~~~~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 588 (796)
....+...|++++|...+++..+.- -.++ ..++..+-..+...|+++.|...+....+.. .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445667788888888888775431 0122 2456666677777888888888877766531 11 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 036290 589 AVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQP-SQATFV 655 (796)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~ 655 (796)
.+...|...|++++|.+.+++.+.. + ...++..+...|...|++++|.+.+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888899999998888665542 2 2247788899999999999999999988762 2324 456688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 036290 656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGY---LEDAKHVIEIMPFQPSP-TVYRSLLSG 728 (796)
Q Consensus 656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~ 728 (796)
.+...+...|++++|...+++......-..+ ...+..+...+...|+ +++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8889999999999999999988743211112 3346678888999999 99999999999655543 567788899
Q ss_pred HHhcCChHHHHHHHHHHHccCC
Q 036290 729 CRIHGNKELGEWASEKLLLLLP 750 (796)
Q Consensus 729 ~~~~g~~~~A~~~~~~~~~~~p 750 (796)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998654
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=3.1e-11 Score=122.45 Aligned_cols=237 Identities=13% Similarity=0.084 Sum_probs=148.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHh------CC-
Q 036290 515 ASWGAMMSALVHQGHNHEAVTIFHSLVEA-------GEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKL------GF- 580 (796)
Q Consensus 515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 580 (796)
.++..+...+...|++++|...++++.+. ........+..+...+...|+++.|...++...+. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555666666666666666666666442 11223345556666666777777777777666553 11
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 036290 581 NTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---------N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----- 645 (796)
Q Consensus 581 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 645 (796)
......+..+...|...|++++|.+.+++.+.. + ....+..+...+...|++++|.++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 223456667777777788888877777554432 1 3456777888888999999999999888763
Q ss_pred -CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc------CCCCC-chHH------HHHHHHHHhcCChHHHHHHH
Q 036290 646 -NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY------GMQPS-PDCY------GCLVDMLSRNGYLEDAKHVI 710 (796)
Q Consensus 646 -g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~~~~------~~l~~~~~~~g~~~~A~~~~ 710 (796)
+..| ...++..+...+...|++++|...++++.... ...+. ...+ ..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 2244 34567788889999999999999999887421 12222 2222 22223334455566666666
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 711 EIMP-FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 711 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
++.. ..| +..+|..+..+|...|++++|...+++++++.|+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6663 333 3467889999999999999999999999998875
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.20 E-value=1.7e-10 Score=121.99 Aligned_cols=263 Identities=13% Similarity=0.061 Sum_probs=186.6
Q ss_pred HHHHHHhcCCcchHHHHHhcCCC--C-C----HhhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHH
Q 036290 489 LIKSYVNFGQLDNSFEFSNGAER--L-D----MASWGAMMSALVHQGHNHEAVTIFHSLVEA----GEKPD-EYILGTIL 556 (796)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll 556 (796)
....+...|++++|...|+...+ | + ...|..+...+...|++++|...+++.... +-.|. ..++..+.
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 33444444444444444443322 1 1 234566667777788888888887775332 21222 34667777
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCC--------------------HHHHHHHHhccC
Q 036290 557 NSCAAIGAYQRTKSIHPFVIKLGFN-----TEVYVASAVIDAYAKCGD--------------------IKGARMAFDQSF 611 (796)
Q Consensus 557 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~ 611 (796)
..+...|+++.|...++...+.... .....+..+...|...|+ +++|.+.+.+.+
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 8889999999999999887763211 124477888899999999 999988886544
Q ss_pred CC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 612 NS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANL-QPS----QATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 612 ~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
.. + ....+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 32 1 335688888999999999999999999876211 112 2367888889999999999999999887
Q ss_pred hhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 679 SQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPS----PTVYRSLLSGCRIHGNKELGEWASEKLL 746 (796)
Q Consensus 679 ~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 746 (796)
....-.++ ..++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43211122 567888999999999999999999887 11222 4578888999999999999999999999
Q ss_pred ccCCC
Q 036290 747 LLLPK 751 (796)
Q Consensus 747 ~~~p~ 751 (796)
++.+.
T Consensus 335 ~~~~~ 339 (406)
T 3sf4_A 335 EISRE 339 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87443
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.18 E-value=2e-07 Score=102.98 Aligned_cols=230 Identities=10% Similarity=-0.021 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHH-HHHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 036290 466 MVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSF-EFSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLV 541 (796)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 541 (796)
.+..+|+..+..- +....++-..+..+...|+.++|. +++++... | +...|-..+...-+.|++++|.++|+++.
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445555555542 445666666666666677777775 66665543 2 34445556666666777777777777765
Q ss_pred HcC---------CCCC------------HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CC
Q 036290 542 EAG---------EKPD------------EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC-GD 599 (796)
Q Consensus 542 ~~g---------~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 599 (796)
... -.|+ ...|...+....+.|+.+.|..+|....+.-.......|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 431 0132 2356667777777788888888888877651111233343333333333 44
Q ss_pred HHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHH
Q 036290 600 IKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP--SQATFVSVMSACSHKGLVDKGCLLFK 675 (796)
Q Consensus 600 ~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~ 675 (796)
.+.|.++|+..++. .+...|...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+..+.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 78888888666654 355666777777777888888888888887743222 23456666666677788888888888
Q ss_pred HhHhhcCCCCCchHHHHHHHHHHh
Q 036290 676 SMDSQYGMQPSPDCYGCLVDMLSR 699 (796)
Q Consensus 676 ~~~~~~~~~p~~~~~~~l~~~~~~ 699 (796)
++... .|+......+++-|.-
T Consensus 566 R~~~~---~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 566 RFFEK---FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHH---STTCCHHHHHHHHTCB
T ss_pred HHHHh---CCCCcHHHHHHHHhcC
Confidence 88744 5665555556665543
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=8.5e-11 Score=126.50 Aligned_cols=211 Identities=10% Similarity=0.057 Sum_probs=150.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCch-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036290 528 GHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAY-QRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMA 606 (796)
Q Consensus 528 ~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 606 (796)
+..++++..+++.... .+.+...+..+-..+...|++ ++|.+.++...+.... +...+..+..+|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456666666665443 234666777777778888888 8888888888776544 566777788888888888888888
Q ss_pred HhccCCC-CChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc--------CCH
Q 036290 607 FDQSFNS-NDVIVYNTLIMAYAHH---------GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK--------GLV 667 (796)
Q Consensus 607 ~~~~~~~-~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~--------g~~ 667 (796)
|++.+.. |+...+..+...+... |++++|++.+++..+ +.| +...|..+..+|... |++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8666554 5667777777777777 888888888888877 455 566677777777777 778
Q ss_pred HHHHHHHHHhHhhcCCCC----CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 036290 668 DKGCLLFKSMDSQYGMQP----SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWA 741 (796)
Q Consensus 668 ~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 741 (796)
++|+..|+++.+ +.| +...|..+..+|...|++++|.+.+++. ...| +...+..+...+...|+.++|...
T Consensus 238 ~~A~~~~~~al~---~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHH---HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887773 345 4677777888888888888888888776 3444 345677777777777777777765
Q ss_pred HHHH
Q 036290 742 SEKL 745 (796)
Q Consensus 742 ~~~~ 745 (796)
++++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5443
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=5.5e-10 Score=120.11 Aligned_cols=207 Identities=8% Similarity=-0.012 Sum_probs=171.7
Q ss_pred cchHHHHHhcCCC---CCHhhHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 036290 499 LDNSFEFSNGAER---LDMASWGAMMSALVHQGHN-HEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPF 574 (796)
Q Consensus 499 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 574 (796)
++++...++.... .+...|..+...+...|++ ++|.+.|++..+.. +-+...+..+...+...|++++|.+.++.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666655433 4677888888899999999 99999999987763 34577888899999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhc---------CCHHHHHHHHhccCCC--CChhHHHHHHHHHHhc--------CChHHH
Q 036290 575 VIKLGFNTEVYVASAVIDAYAKC---------GDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHH--------GLVSEA 635 (796)
Q Consensus 575 ~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~--------g~~~~A 635 (796)
..+.. |+...+..+..+|... |++++|.+.+++.+.. .+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 88865 4568888899999999 9999999999776653 4778899999999888 899999
Q ss_pred HHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHH
Q 036290 636 MEIFDKMKLANLQP----SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVI 710 (796)
Q Consensus 636 ~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 710 (796)
++.|++..+ +.| +...|..+..+|...|++++|.+.|+++.+ +.|+ ...+..+..++...|++++|++.+
T Consensus 241 ~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 241 LSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 456 667788888999999999999999999883 4566 677888999999999999998877
Q ss_pred HhC
Q 036290 711 EIM 713 (796)
Q Consensus 711 ~~~ 713 (796)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 665
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.13 E-value=1.1e-09 Score=101.31 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=92.9
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036290 513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVID 592 (796)
Q Consensus 513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 592 (796)
++..|..+...|.+.|++++|++.|++..+. .|+ +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~la~ 47 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPN----------------------------------NVETLLKLGK 47 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHH
Confidence 3455666666666666666666666666554 222 3334444444
Q ss_pred HHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 036290 593 AYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDK 669 (796)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 669 (796)
+|.+.|++++|...+...... .+...+..+...+...++++.|...+++..+ ..| +...+..+...+...|++++
T Consensus 48 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 48 TYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchh
Confidence 555555555555555333221 2444555555566666666666666666665 344 44556666666666777777
Q ss_pred HHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 670 GCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 670 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
|++.|++..+ +.|+ ..++..++.+|.+.|++++|++.+++.
T Consensus 126 A~~~~~~~l~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 126 AIEAYEKTIS---IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777766662 3444 556666667777777777777766665
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.12 E-value=5e-10 Score=107.72 Aligned_cols=202 Identities=15% Similarity=0.071 Sum_probs=147.7
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHH
Q 036290 547 PDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIM 624 (796)
Q Consensus 547 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~ 624 (796)
.|+..+...-..+...|+++.|...++...+....++...+..+..++...|++++|.+.+++.+.. .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567777777888888999999999998888776556677777888888889999998888766654 35667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHH
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQPS-Q-------ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCL 693 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l 693 (796)
.|...|++++|+..+++..+ ..|+ . ..|..+...+...|++++|+..|+++. ...|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 88888888899888888887 4563 3 346666677788888888888888887 45665 4667777
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 694 VDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
..+|...|+. .++++ .. ..+...|.... ....+++++|...++++++++|+++.+...|+
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 7777665543 23333 11 22333343332 33456689999999999999999988766553
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.11 E-value=1.1e-09 Score=110.83 Aligned_cols=179 Identities=16% Similarity=0.114 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHh
Q 036290 531 HEAVTIFHSLVEAGEKP-DEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVY-VASAVIDAYAKCGDIKGARMAFD 608 (796)
Q Consensus 531 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 608 (796)
++|..+|++.... +.| +...|..+...+...|+++.|.++|+...+.... +.. .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5666666666542 133 3345566666666666666666666666653222 222 66677777777777777777776
Q ss_pred ccCCC--CChhHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCC
Q 036290 609 QSFNS--NDVIVYNTLIMAYA-HHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQ 684 (796)
Q Consensus 609 ~~~~~--~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 684 (796)
+.+.. ++...|........ ..|++++|.++|++..+ ..| +...|..++..+.+.|++++|..+|+++.....+.
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 66553 23334433333322 26888888888888877 445 56677778888888888888888888888542245
Q ss_pred CC--chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 685 PS--PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 685 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
|+ ...|..++..+.+.|+.++|..+++++
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53 567778888888888888888888877
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.09 E-value=8.3e-10 Score=113.16 Aligned_cols=129 Identities=16% Similarity=0.058 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CH
Q 036290 585 YVASAVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN----LQP-SQ 651 (796)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~ 651 (796)
..+..+...|...|++++|.+.+++.+.. + ....+..+...+...|++++|...+++..+.. ..+ ..
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 34555666667777777777766544432 1 12366777788888888888888888776521 111 14
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
.++..+...+...|++++|...++++.....-..+ ..++..+..+|.+.|++++|.+.+++.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45677778888899999999988887643111111 456778888899999999999988875
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=4.7e-10 Score=125.47 Aligned_cols=164 Identities=13% Similarity=0.171 Sum_probs=141.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036290 583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMS 659 (796)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 659 (796)
+...++.+...|.+.|++++|++.|++.+.. .+...|..+..+|.+.|++++|++.|++..+ +.| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 3567788888888899999999888776653 4778899999999999999999999999998 677 5678899999
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChH
Q 036290 660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKE 736 (796)
Q Consensus 660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 736 (796)
++...|++++|++.|++.. .+.|+ ...|..+..+|.+.|++++|++.+++. ...|+ ...|..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl---~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAI---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998 45777 788999999999999999999999987 55664 578899999999999999
Q ss_pred HHHHHHHHHHccCCC
Q 036290 737 LGEWASEKLLLLLPK 751 (796)
Q Consensus 737 ~A~~~~~~~~~~~p~ 751 (796)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987664
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=2.6e-08 Score=103.99 Aligned_cols=230 Identities=10% Similarity=-0.006 Sum_probs=169.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHhC--C---C-CchhHHH
Q 036290 520 MMSALVHQGHNHEAVTIFHSLVEAGE-KPD----EYILGTILNSCAAIGAYQRTKSIHPFVIKLG--F---N-TEVYVAS 588 (796)
Q Consensus 520 li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 588 (796)
....+...|++++|...|++..+... .++ ..++..+...+...|+++.|...+....+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455678888888888888764311 122 3456667777888888888888888776531 1 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHH
Q 036290 589 AVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQPSQATFVS 656 (796)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ 656 (796)
.+...|...|++++|.+.+++.+.. + ...++..+...|...|++++|.+.+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 7888899999999999888665542 2 2346778888999999999999999998761 11223566888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 036290 657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGY---LEDAKHVIEIMPFQPSP-TVYRSLLSGC 729 (796)
Q Consensus 657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~ 729 (796)
+...+.+.|++++|..++++......-.++ ...+..+...+...|+ +.+|+..+++.+..|+. ..+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 889999999999999999998855332222 3456667777778888 99999999997655543 4667888889
Q ss_pred HhcCChHHHHHHHHHHHccC
Q 036290 730 RIHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 730 ~~~g~~~~A~~~~~~~~~~~ 749 (796)
...|++++|...++++++..
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.06 E-value=5.2e-09 Score=109.63 Aligned_cols=221 Identities=9% Similarity=-0.074 Sum_probs=153.2
Q ss_pred HHHHHHhcCCcchHHHHHhcCCC-----C----CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC-----HHHHH
Q 036290 489 LIKSYVNFGQLDNSFEFSNGAER-----L----DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGE-KPD-----EYILG 553 (796)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-----~~t~~ 553 (796)
....+...|++++|...++...+ + ...+|..+...|...|++++|...+++..+.-. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44455666777777766665433 1 234566777777778888888887777643210 111 24566
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----C--C-ChhHHH
Q 036290 554 TILNSCAAIGAYQRTKSIHPFVIKLGFN-----TEVYVASAVIDAYAKCGDIKGARMAFDQSFN-----S--N-DVIVYN 620 (796)
Q Consensus 554 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~--~-~~~~~~ 620 (796)
.+-..+...|+++.|.+.++...+.... ....++..+..+|...|++++|.+.+++.+. . | ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6667778888888888888776653111 1124677788888899999999888866655 1 2 345678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHhccCC---HHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 621 TLIMAYAHHGLVSEAMEIFDKMKLANL---QP-SQATFVSVMSACSHKGL---VDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 621 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-~~~t~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
.+...|...|++++|...+++..+... .| ....+..+...+...|+ +++|+.++++.. ..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~----~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM----LYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----CHHHHHHHHHH
Confidence 888899999999999999998876211 12 22335667778888898 778888877663 3344 667888
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+...|...|++++|.+.+++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999876
No 78
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=1.7e-08 Score=98.47 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=160.4
Q ss_pred HHhcCCcchHHHHHhcCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHH
Q 036290 493 YVNFGQLDNSFEFSNGAERLD-MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSI 571 (796)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 571 (796)
..-.|.+..++.-...+...+ ...-.-+.++|...|++... ..-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 334566665555444443211 12222234566666665531 11233333333333333 222 5566
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036290 572 HPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANL 647 (796)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 647 (796)
++.+...+ .++......+..++...|++++|++++.+.+.. .+...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66665554 344555567888899999999999999666554 3667788889999999999999999999988 6
Q ss_pred CC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CC--
Q 036290 648 QP-----SQATFVSVMSA--CSHKG--LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PF-- 715 (796)
Q Consensus 648 ~p-----~~~t~~~ll~~--~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 715 (796)
.| +..+...|..+ ....| ++++|..+|+++.. -.|+..+...+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 77 36666667666 33344 89999999999873 3565333344555899999999999999865 21
Q ss_pred --------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 716 --------QP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 716 --------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
.| |+.+...+|......|+ +|.++++++.+.+|+++...
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 24 45666677777667787 88999999999999988654
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.99 E-value=1.7e-09 Score=109.53 Aligned_cols=160 Identities=11% Similarity=0.114 Sum_probs=80.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------C
Q 036290 551 ILGTILNSCAAIGAYQRTKSIHPFVIKL------GFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---------N 614 (796)
Q Consensus 551 t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~ 614 (796)
++..+...+...|+++.|.+.++...+. +-. .....+..+...|...|++++|.+.+++.+.. +
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3444444444555555555555444432 111 12334455555666666666666655443321 1
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHH-------HHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290 615 -DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA-------NLQPSQAT-------FVSVMSACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 615 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t-------~~~ll~~~~~~g~~~~A~~~~~~~~~ 679 (796)
....+..+...|...|++++|.+.++++.+. ...+.... +..+...+...+.+.++...++...
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~- 271 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK- 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC-
Confidence 3345667777777788888888777777652 12221111 1122223333444555555565554
Q ss_pred hcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 680 QYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 680 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
...|+ ..++..++.+|.+.|++++|.+.+++.
T Consensus 272 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 272 --VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 23344 677888888899999999998888764
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.92 E-value=1.4e-07 Score=98.21 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC----chhH
Q 036290 518 GAMMSALVHQGHNHEAVTIFHSLVEA----GEK--PD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNT----EVYV 586 (796)
Q Consensus 518 ~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 586 (796)
..+...+...|++++|...+++.... +.. |. ...+..+...+...|+++.|...++......... ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34455556666666666666655331 111 21 2233344445556666666666666555432211 1223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 036290 587 ASAVIDAYAKCGDIKGARMAFD 608 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~ 608 (796)
+..+...+...|++++|...++
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~ 198 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLN 198 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444455555555555555553
No 81
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=1.9e-08 Score=86.95 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVD 695 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 695 (796)
.|..+...+...|++++|..+++++.+. .| +...+..+...+...|++++|..+++++... .| +...+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHH
Confidence 5677788888999999999999998874 34 6677888888899999999999999998844 34 3677888999
Q ss_pred HHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290 696 MLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
.+...|++++|.+.++++ .. +.+...+..++..+...|++++|...++++++.+|++
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999887 33 3356788889999999999999999999999998863
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=9.2e-08 Score=95.54 Aligned_cols=213 Identities=8% Similarity=0.001 Sum_probs=126.4
Q ss_pred cchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCchHHHHHHHH
Q 036290 499 LDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEA----GEKPD-EYILGTILNSCAAIGAYQRTKSIHP 573 (796)
Q Consensus 499 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 573 (796)
+++|...++.. ...|...|++++|...|.+..+. |-.++ ..+|..+...+...|+++.|...++
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56665555443 44566777777777777766432 21111 2345555555555666666655555
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC--
Q 036290 574 FVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH-GLVSEAMEIFDKMKLANLQPS-- 650 (796)
Q Consensus 574 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-- 650 (796)
...+. +...|+...+ ..+++.+...|... |++++|+..|++..+ +.|+
T Consensus 102 ~Al~l---------------~~~~g~~~~~------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~ 152 (292)
T 1qqe_A 102 NAIQI---------------FTHRGQFRRG------------ANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQ 152 (292)
T ss_dssp HHHHH---------------HHHTTCHHHH------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTT
T ss_pred HHHHH---------------HHHcCCHHHH------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCC
Confidence 44331 1112222221 23456677777775 888888888777766 2221
Q ss_pred -----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---c-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036290 651 -----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---P-----DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ 716 (796)
Q Consensus 651 -----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 716 (796)
..++..+...+...|++++|+..|+++... .|+ . ..|..++.++...|++++|...+++. .+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 245677777888888888888888887733 333 1 14566777788888888888888887 444
Q ss_pred CCHH------HHHHHHHHHH--hcCChHHHHHHHHHHHccCCCCCc
Q 036290 717 PSPT------VYRSLLSGCR--IHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 717 p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
|+.. .+..++.++. ..+++++|...++++.+++|....
T Consensus 230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 5432 2344455553 345688888888888887775543
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.90 E-value=1.5e-08 Score=100.81 Aligned_cols=200 Identities=13% Similarity=0.056 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------
Q 036290 550 YILGTILNSCAAIGAYQRTKSIHPFVIKL------GFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--------- 613 (796)
Q Consensus 550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------- 613 (796)
.++..+...+...|+++.|...++...+. +-. .....+..+...|...|++++|.+.+.+.+..
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444555555555555555544432 111 12345555666666666666666666544332
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc----
Q 036290 614 N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA------NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY---- 681 (796)
Q Consensus 614 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---- 681 (796)
| ....+..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|..+++++....
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1 3456777788888888888888888888763 1134 34567888889999999999999999887431
Q ss_pred --CCCCC-chHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290 682 --GMQPS-PDCYGCLVDMLSRNGY------LEDAKHVIEIMP-FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 682 --~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 749 (796)
...+. ...+..+...+...+. +.++...++... ..| ...++..+...+...|++++|...++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 12333 3444444444444333 444444444443 223 23578889999999999999999999998753
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.90 E-value=1.5e-08 Score=113.44 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=107.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHh
Q 036290 551 ILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAH 628 (796)
Q Consensus 551 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~ 628 (796)
.++.+-..+.+.|++++|.+.+++..+.... +...+..+..+|.+.|++++|++.|++.+.. .+...|..+...|..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444443322 4455666666777777777777777555442 356777888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHH
Q 036290 629 HGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 629 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 706 (796)
.|++++|++.|++..+ +.| +...|..+..++...|++++|++.|+++. .+.|+ ...+..++.+|...|++++|
T Consensus 90 ~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al---~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTAL---KLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888887 566 55678888888888888888888888887 34676 67788888888888888888
Q ss_pred HHHHHhC
Q 036290 707 KHVIEIM 713 (796)
Q Consensus 707 ~~~~~~~ 713 (796)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777665
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.89 E-value=4.1e-08 Score=94.18 Aligned_cols=197 Identities=11% Similarity=0.102 Sum_probs=151.7
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290 512 LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVI 591 (796)
Q Consensus 512 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 591 (796)
.|+..|......+...|++++|...|++..+....++...+..+..++...|+++.|.+.++...+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888888999999999999999999988764478888888888999999999999999999987655 677888999
Q ss_pred HHHHhcCCHHHHHHHHhccCCC-C-Ch-------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 036290 592 DAYAKCGDIKGARMAFDQSFNS-N-DV-------IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS---QATFVSVMS 659 (796)
Q Consensus 592 ~~~~~~g~~~~A~~~~~~~~~~-~-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~ 659 (796)
.+|...|++++|...+++.+.. | +. ..|..+...+...|++++|++.|++..+ ..|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 9999999999999999776653 3 44 4588888889999999999999999998 6776 345666666
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036290 660 ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPT 720 (796)
Q Consensus 660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 720 (796)
.+...| ..+++++... ...+...|.... ....|.+++|...+++. ...|+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~--~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPL--ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHGGG--TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHH-----HHHHHHHHhc--ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 665444 4445555422 122234443332 34567789999999887 4566543
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.87 E-value=1.1e-07 Score=99.15 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=150.1
Q ss_pred HHHHhcCCcchHHHHHhcCCC-----C----CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcC--C---CC-CHHHHHHH
Q 036290 491 KSYVNFGQLDNSFEFSNGAER-----L----DMASWGAMMSALVHQGHNHEAVTIFHSLVEAG--E---KP-DEYILGTI 555 (796)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~---~p-~~~t~~~l 555 (796)
..+...|++++|...|+...+ + ...++..+...|...|+++.|...+++..+.. . .+ ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666554432 1 23356667777777788888877777764321 0 11 13456666
Q ss_pred HHHHhccCchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----C-C-ChhHHHHHH
Q 036290 556 LNSCAAIGAYQRTKSIHPFVIKL----GFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFN-----S-N-DVIVYNTLI 623 (796)
Q Consensus 556 l~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-~-~~~~~~~li 623 (796)
-..+...|+++.|.+.+....+. +-. ....++..+..+|...|++++|.+.+++.+. . | ...++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 77778888888888887776652 111 1234667788888899999999988876665 2 2 356677888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHhccCC---HHHHHHHHHHhHhhcCCCCC-chHHHHHHH
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANLQ---P-SQATFVSVMSACSHKGL---VDKGCLLFKSMDSQYGMQPS-PDCYGCLVD 695 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~~---p-~~~t~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 695 (796)
..+.+.|++++|...+++..+.... | ....+..+...+...|+ +++|+.++++. +..|+ ...+..+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHH
Confidence 8999999999999999998874222 2 22345555566777888 88888888764 33344 566778999
Q ss_pred HHHhcCChHHHHHHHHhC
Q 036290 696 MLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~ 713 (796)
.|...|++++|.+.+++.
T Consensus 345 ~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999999875
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=1.5e-08 Score=95.39 Aligned_cols=127 Identities=9% Similarity=0.079 Sum_probs=100.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHH
Q 036290 621 TLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLS 698 (796)
Q Consensus 621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 698 (796)
.+...|...|++++|...|++..+ +.| +...+..+...+...|++++|+..|+++. .+.|+ ...+..+..+|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL---QLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHH
Confidence 388889999999999999999998 567 66788889999999999999999999998 44676 788888888887
Q ss_pred hcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290 699 RNGY--LEDAKHVIEIMPFQPSP--TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 699 ~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
..|+ .+.+...+++.. .|++ ..+..+..++...|++++|+..++++++++|+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 6654 445556665552 3443 3455566677788999999999999999999743
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.84 E-value=1e-09 Score=97.13 Aligned_cols=129 Identities=9% Similarity=-0.064 Sum_probs=81.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCh
Q 036290 626 YAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYL 703 (796)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 703 (796)
+...|++++|++.+++... ..| +...+..+...|.+.|++++|++.|+++. .+.|+ +..|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---NVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCch
Confidence 3445566666666666554 334 33345556666677777777777777766 33554 66666777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHccCCCCCcceEEe
Q 036290 704 EDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEW-ASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 704 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l 759 (796)
++|...+++. ...| +..+|..+...+.+.|+.++|.. .++++++++|+++.+|.+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 7777777666 4444 34566777777777777655443 4577777777777665443
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.84 E-value=3.9e-08 Score=96.54 Aligned_cols=169 Identities=12% Similarity=0.009 Sum_probs=121.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHH
Q 036290 583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-D---VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----QAT 653 (796)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t 653 (796)
+...+-.+...+.+.|++++|...|++.+.. | + ...+..+..+|...|++++|...|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 3444555566677777777777777655553 3 3 456677777788888888888888888773 332 234
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHhHhhcCCCCC-chHH-----------------HHHHHHHHhcCChHHHH
Q 036290 654 FVSVMSACSH--------KGLVDKGCLLFKSMDSQYGMQPS-PDCY-----------------GCLVDMLSRNGYLEDAK 707 (796)
Q Consensus 654 ~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~ 707 (796)
+..+..++.. .|++++|+..|+++... .|+ .... ..+..+|.+.|++++|+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5556666666 78888888888888744 344 2333 56788999999999999
Q ss_pred HHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCCcce
Q 036290 708 HVIEIM-PFQPS----PTVYRSLLSGCRIH----------GNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 708 ~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
..++++ ...|+ ...+..+..++... |++++|...++++++..|+++.+.
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 999987 33343 35677888888766 889999999999999999987543
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.82 E-value=2.2e-07 Score=85.35 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=96.2
Q ss_pred hHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036290 485 ICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA 561 (796)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 561 (796)
.+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...+++..+.. +.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~---------- 78 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKV---------- 78 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH----------
Confidence 344455566666666666666666554 244455556666666666666666666655442 223333
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHH
Q 036290 562 IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIF 639 (796)
Q Consensus 562 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 639 (796)
+..+...+...|++++|.+.+++.+.. .+...+..+...+...|++++|.+.+
T Consensus 79 -------------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 79 -------------------------ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp -------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 444444455555555555555333221 34556666777777777777787777
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290 640 DKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS 679 (796)
Q Consensus 640 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 679 (796)
+++.+. .| +...+..+...+...|++++|...++++.+
T Consensus 134 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhc--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777763 34 556677777778888888888888887763
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.81 E-value=1.2e-06 Score=91.20 Aligned_cols=265 Identities=11% Similarity=0.015 Sum_probs=190.2
Q ss_pred HhHHHHHHHhcCCcchHHHHHhcCCC----CCHh----hHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCH----HHH
Q 036290 486 CSSLIKSYVNFGQLDNSFEFSNGAER----LDMA----SWGAMMSALVHQGHNHEAVTIFHSLVEAGE-KPDE----YIL 552 (796)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~t~ 552 (796)
.......+...|++++|...++.... .+.. .++.+...+...|++++|...+++.....- .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455677789999999988776432 2222 456667788889999999999998754211 1222 234
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHhccCCC----C---ChhH
Q 036290 553 GTILNSCAAIGAYQRTKSIHPFVIKL----GFN--T-EVYVASAVIDAYAKCGDIKGARMAFDQSFNS----N---DVIV 618 (796)
Q Consensus 553 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---~~~~ 618 (796)
..+...+...|+++.|...++...+. +.. | ....+..+...+...|++++|...+++.+.. . ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 55667788999999999999987763 222 2 2345667888899999999999999765432 1 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH-----HHHHHhccCCHHHHHHHHHHhHhhcCCCCC-----c
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVS-----VMSACSHKGLVDKGCLLFKSMDSQYGMQPS-----P 687 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~-----ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~ 687 (796)
+..+...+...|++++|...+++.....-.++. ..+.. .+..+...|++++|...+++.... .|. .
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~ 253 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCTTCGGGH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCCcchhhH
Confidence 777888899999999999999998764222221 12222 224477899999999999988732 232 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290 688 DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP--SP-----TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
..+..+..++...|++++|.+.+++. ...+ .. ..+..+..++...|+.++|...++++++..+...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g 327 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 327 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc
Confidence 24567889999999999999999987 2222 21 2556667778999999999999999999987543
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.79 E-value=2.2e-08 Score=100.07 Aligned_cols=162 Identities=9% Similarity=0.006 Sum_probs=116.2
Q ss_pred HHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---C----HHHHHH
Q 036290 592 DAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP---S----QATFVS 656 (796)
Q Consensus 592 ~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~----~~t~~~ 656 (796)
..|...|++++|...|.+.+.. . ...+|+.+...|...|++++|+..+++..+ +.| + ..++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 3566677777777766544331 1 245677888888888999999888888776 222 1 346788
Q ss_pred HHHHHhcc-CCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--------HHH
Q 036290 657 VMSACSHK-GLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP--------TVY 722 (796)
Q Consensus 657 ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~ 722 (796)
+...|... |++++|+..|++...-..-..+ ..++..++..+.+.|++++|++.+++. ...|+. ..|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 88899986 9999999999998843111111 356888999999999999999999987 233321 156
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 723 RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
..+..++...|++++|...++++++++|+....
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 778888999999999999999999999987654
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=3.5e-08 Score=109.25 Aligned_cols=159 Identities=14% Similarity=0.081 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 036290 597 CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLL 673 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~ 673 (796)
.|++++|.+.+++.+.. .+...|..+...+...|++++|.+.+++..+ ..| +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36677777777665554 3567788888888888888888888888887 556 566777788888888888888888
Q ss_pred HHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHc
Q 036290 674 FKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIH---GNKELGEWASEKLLL 747 (796)
Q Consensus 674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 747 (796)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 8888743 455 677888888888888888888888887 3344 456778888888888 888889999998888
Q ss_pred cCCCCCcceEEec
Q 036290 748 LLPKNDAAHVLLS 760 (796)
Q Consensus 748 ~~p~~~~~~~~l~ 760 (796)
.+|++...+.+|+
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 8888877776666
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=1.4e-07 Score=90.13 Aligned_cols=89 Identities=9% Similarity=-0.028 Sum_probs=67.6
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCC-chHH-----------------HHHHHHHHhcCChHHHHHHHHhC-CCCCCH----H
Q 036290 664 KGLVDKGCLLFKSMDSQYGMQPS-PDCY-----------------GCLVDMLSRNGYLEDAKHVIEIM-PFQPSP----T 720 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~ 720 (796)
.|++++|...|+++. ...|+ ...+ ..+...|.+.|++++|+..++++ ...|+. .
T Consensus 109 ~~~~~~A~~~~~~~l---~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 109 PQQARAAFSDFSKLV---RGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp CHHHHHHHHHHHHHH---TTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred cHHHHHHHHHHHHHH---HHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 566777777777766 33444 2222 34677889999999999999988 334442 5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 721 VYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
.+..+..++.+.|+.++|++.++.+....|++..-
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 68889999999999999999999999999987654
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.72 E-value=2.1e-08 Score=88.65 Aligned_cols=139 Identities=14% Similarity=0.069 Sum_probs=108.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLV 667 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 667 (796)
..++...|++++|+..++..++.+ +...+..+...|...|++++|++.|++..+ +.| +..+|..+...+...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 345556778888888887777662 455667788899999999999999999998 667 677888899999999999
Q ss_pred HHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHH-HHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036290 668 DKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHV-IEIM-PFQP-SPTVYRSLLSGCRIHGN 734 (796)
Q Consensus 668 ~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~-~~~p-~~~~~~~l~~~~~~~g~ 734 (796)
++|+..|+++. .+.|+ +..+..+..+|.+.|++++|.+. +++. .+.| ++.+|......+...|+
T Consensus 82 ~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSV---ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999998 45676 78888999999999998876655 5665 5566 45667666666666664
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=1.4e-07 Score=106.24 Aligned_cols=142 Identities=14% Similarity=0.031 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 036290 584 VYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSA 660 (796)
Q Consensus 584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 660 (796)
...+..+..+|...|++++|.+.+++.+.. .+...|..+..++...|++++|.+.|++..+ +.| +...+..+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAAT 510 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Confidence 334444445555555555555555443332 2444555555555555555555555555555 334 33444555555
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh
Q 036290 661 CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRI 731 (796)
Q Consensus 661 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~ 731 (796)
+...|++++ ++.|+++. .+.|+ ...|..+..++.+.|++++|.+.++++ ...|+. ..|..+..++..
T Consensus 511 ~~~~g~~~~-~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVW---STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTCCCT-TCHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHcCChHH-HHHHHHHH---HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 555555555 55555554 22343 444555555555555555555555555 344432 344444444433
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.70 E-value=1.2e-06 Score=85.35 Aligned_cols=182 Identities=11% Similarity=0.116 Sum_probs=122.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 036290 533 AVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGF-NTEVYVASAVIDAYAKCGDIKGARMAFDQSF 611 (796)
Q Consensus 533 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 611 (796)
|+..|++....+ .++..++..+..++...|+++.|.+++...+..+. .-+...+..++..+.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665544 45555555666677777888888888777665554 2356677777888888888888888885443
Q ss_pred CC-C-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290 612 NS-N-----DVIVYNTLIMA--YAHHG--LVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY 681 (796)
Q Consensus 612 ~~-~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 681 (796)
.. | +..+...++.+ ....| ++.+|..+|+++.+ -.|+..+-..++.++.+.|++++|...++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33 3 24455555555 33334 89999999999876 44664444455558888999999999998776431
Q ss_pred -C------CCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290 682 -G------MQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP 719 (796)
Q Consensus 682 -~------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 719 (796)
. ..|+ +.++..+|.+....|+ +|.++++++ ...|+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 0 0355 7777666666666777 788888888 456654
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=1.2e-07 Score=86.43 Aligned_cols=156 Identities=9% Similarity=-0.035 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 036290 587 ASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSA-CSH 663 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 663 (796)
...+...+...|++++|...+++.+.. .+...+..+...+...|++++|...+++..+ ..|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHh
Confidence 445566778889999999999766654 4777888888999999999999999988876 44543322222111 112
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHH
Q 036290 664 KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS---PTVYRSLLSGCRIHGNKELG 738 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A 738 (796)
.+....|...+++.. ...|+ +..+..+..++...|++++|.+.++++ ...|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al---~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQEL---AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222334678888877 34666 788888999999999999999999887 55554 45788889999999999999
Q ss_pred HHHHHHHHc
Q 036290 739 EWASEKLLL 747 (796)
Q Consensus 739 ~~~~~~~~~ 747 (796)
...+++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.67 E-value=3e-08 Score=84.52 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=90.4
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 036290 647 LQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVY 722 (796)
Q Consensus 647 ~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 722 (796)
+.|+ ...+......+.+.|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. ...| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 5563 35577777888899999999999998883 4565 788888999999999999999999887 4444 56788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290 723 RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 759 (796)
..+..++...|++++|++.++++++++|+++.++..|
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9999999999999999999999999999998776544
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.67 E-value=8.8e-07 Score=87.73 Aligned_cols=167 Identities=13% Similarity=0.152 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHH
Q 036290 516 SWGAMMSALVHQGHNHEAVTIFHSLVEA------GE-KPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVAS 588 (796)
Q Consensus 516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 588 (796)
++..+...|...|++++|...+++.... .- +....++..+...+...|+++.|...++...+.
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 156 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI---------- 156 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Confidence 4555566666666666666666665432 11 112344555556666666666666666655442
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCH-HHHHHH
Q 036290 589 AVIDAYAKCGDIKGARMAFDQSFN--SN-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA-------NLQPSQ-ATFVSV 657 (796)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-~t~~~l 657 (796)
+..... .+ ....+..+...|...|++++|...+++..+. ...+.. ..+..+
T Consensus 157 ------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (283)
T 3edt_B 157 ------------------YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHA 218 (283)
T ss_dssp ------------------HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHH
T ss_pred ------------------HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 000000 00 2234455555566666666666666655542 122322 223322
Q ss_pred HHHHhccC------CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 658 MSACSHKG------LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 658 l~~~~~~g------~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
.......+ .+..+...++... ...|+ ..++..+..+|.+.|++++|.+++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 219 EEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHTTCCCCC------------CCC---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22222222 2333333333222 12233 566778888888889999888888764
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.64 E-value=7e-07 Score=100.47 Aligned_cols=182 Identities=9% Similarity=-0.016 Sum_probs=141.2
Q ss_pred HHcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290 525 VHQGHNHEAVTIFHSLV--------EAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK 596 (796)
Q Consensus 525 ~~~~~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 596 (796)
...|++++|++.+++.. +. .+.+...+..+..++...|+++.|.+.++...+.... +...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56788888888888876 32 1334456777777888888899998888888876554 66788888888999
Q ss_pred cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 036290 597 CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLL 673 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~ 673 (796)
.|++++|.+.|++.+.. .+...|..+..++...|++++ ++.|++..+ ..| +...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999776653 377788889999999999999 999999988 566 567788888899999999999999
Q ss_pred HHHhHhhcCCCCC-chHHHHHHHHHHhcCC--------hHHHHHHHHhCC
Q 036290 674 FKSMDSQYGMQPS-PDCYGCLVDMLSRNGY--------LEDAKHVIEIMP 714 (796)
Q Consensus 674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 714 (796)
|+++. .+.|+ ...+..+..++...|+ +++|.+.++.+.
T Consensus 557 ~~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99887 66787 6777778888766444 667777777763
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.62 E-value=2.9e-07 Score=86.53 Aligned_cols=186 Identities=15% Similarity=0.073 Sum_probs=124.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290 517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK 596 (796)
Q Consensus 517 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 596 (796)
+-.....+...|++++|...|++..+. .|+........ .... . ..........+..+|.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~--~---------------~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDK--N---------------SEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCT--T---------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcc--h---------------hhhhHHHHHHHHHHHHH
Confidence 334455677888999999998888765 44432211110 0000 0 00112233457888899
Q ss_pred cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC--HHHHH
Q 036290 597 CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGL--VDKGC 671 (796)
Q Consensus 597 ~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~--~~~A~ 671 (796)
.|++++|...|++.+.. .+...|..+...+...|++++|...|++..+ +.| +..++..+...+...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999776653 4788899999999999999999999999998 667 56678777777765553 44555
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036290 672 LLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLS 727 (796)
Q Consensus 672 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 727 (796)
..++... ...|....+..+..++...|++++|+..|++. ...|+......+..
T Consensus 145 ~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 145 TDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555543 22333334455677778889999999999987 77888766555544
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=1.5e-06 Score=81.90 Aligned_cols=173 Identities=12% Similarity=-0.067 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 036290 568 TKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHG----LVSEAMEIFDKMK 643 (796)
Q Consensus 568 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 643 (796)
|.+.|+...+.| ++..+..+...|...+++++|.+.|++.....+...+..|...|.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444444443 5566667777777778888888888777666777777777777777 5 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHh----cCChHHHHHHHHh
Q 036290 644 LANLQPSQATFVSVMSACSH----KGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSR----NGYLEDAKHVIEI 712 (796)
Q Consensus 644 ~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 712 (796)
+.| +...+..|...|.. .+++++|..+|++.. ...|+ +..+..|..+|.. .+++++|.+++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 55566667777766 778888888888887 33443 6777788888887 7788889888888
Q ss_pred C-CCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHccCC
Q 036290 713 M-PFQPSPTVYRSLLSGCRIH-G-----NKELGEWASEKLLLLLP 750 (796)
Q Consensus 713 ~-~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p 750 (796)
. ...++...+..|...|..- | |.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3334566777777776543 3 88899999988887654
No 104
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=2.1e-05 Score=84.17 Aligned_cols=370 Identities=9% Similarity=-0.011 Sum_probs=210.6
Q ss_pred hCC-CccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHHH
Q 036290 324 ENK-NPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGA-VEMA 401 (796)
Q Consensus 324 ~~~-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~A 401 (796)
+.| +++.|..+|+.+... -|. ++.+.+..+|+..... .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888877653 233 7888888888887774 4677788777777766653 2344
Q ss_pred HHHHHhCC------CCChhhHHHHHHHHH----hcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHH
Q 036290 402 HSVFDNVS------YKNITTWNELLSGYC----FNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIH 471 (796)
Q Consensus 402 ~~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 471 (796)
..+|+... ..+...|...+.-+. .+++.+.+.++|++........-...|...... ....+...+..++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHH
Confidence 44554432 124456666665433 234566677777777653211111222211111 1111112222222
Q ss_pred HHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC----CCHhhHHHHHHHHHHcC--C-----hhHHHHHHHHH
Q 036290 472 GAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER----LDMASWGAMMSALVHQG--H-----NHEAVTIFHSL 540 (796)
Q Consensus 472 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~--~-----~~~A~~~~~~m 540 (796)
.... +.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|++.
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 2111 011112222211111 13335544444322211 1 23466788887
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccC---C----
Q 036290 541 VEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR-MAFDQSF---N---- 612 (796)
Q Consensus 541 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~---~---- 612 (796)
.... +.+...|...+.-+.+.|+.+.|..+++..... +.+...+.. |....+.++.. .+. +.. .
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~-~~~~~~~~~~~ 277 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLK-RKYSMGEAESA 277 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHH-HHTC-------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHH-HHHHhhccchh
Confidence 7653 455677777777788889999999999999888 334333332 22211111111 111 111 0
Q ss_pred ---C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHhhcCCCCC
Q 036290 613 ---S--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS-HKGLVDKGCLLFKSMDSQYGMQPS 686 (796)
Q Consensus 613 ---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~p~ 686 (796)
. .....|...+....+.+..+.|..+|++. .. ...+...|......-. ..++.+.|..+|+...+.++- +
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~ 353 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--S 353 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--C
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--C
Confidence 0 12345777777777888899999999999 31 1124444432222112 234699999999999866422 2
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
+..+...++...+.|+.+.|..+++++. .....|...+.--...|+.+.+..+++++.+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556667888889999999999999983 2567888888888889999999999999885
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=7.9e-06 Score=80.66 Aligned_cols=221 Identities=10% Similarity=-0.050 Sum_probs=166.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---
Q 036290 528 GHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAIG--AYQRTKSIHPFVIKLGFNTEVYVASAVIDAY----AKC--- 597 (796)
Q Consensus 528 ~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 597 (796)
...++|+++++++... .|+. ..|+.--..+...+ +++++.+.++.+....+. +..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3446788888887765 4443 34455445555666 888888888888877665 455555554444 444
Q ss_pred CCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC------
Q 036290 598 GDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVS--EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGL------ 666 (796)
Q Consensus 598 g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~------ 666 (796)
+++++++++++.++.. .+...|+.-.-.+.+.|+++ ++++.++++.+ ..| |...|+.-...+.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 7889999988766654 48888888888888888888 99999999998 456 77778777777777776
Q ss_pred HHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHHH
Q 036290 667 VDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLED-AKHVIEIM-PF----QPSPTVYRSLLSGCRIHGNKELGE 739 (796)
Q Consensus 667 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~ 739 (796)
++++++.++++.. ..|+ ...|+.+..++.+.|+..+ +.++.+++ .. ..++..+..++..+.+.|+.++|.
T Consensus 202 ~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8999999999883 4565 7888888888988888544 55677776 22 346788999999999999999999
Q ss_pred HHHHHHHc-cCCCCCcce
Q 036290 740 WASEKLLL-LLPKNDAAH 756 (796)
Q Consensus 740 ~~~~~~~~-~~p~~~~~~ 756 (796)
++++.+.+ .+|-...+|
T Consensus 279 ~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHhccChHHHHHH
Confidence 99999996 799766554
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=5.9e-07 Score=84.84 Aligned_cols=130 Identities=12% Similarity=-0.026 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 036290 586 VASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK 664 (796)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 664 (796)
.+..+...+...|++++|.+.+++.+ .++...|..+...|...|++++|.+.+++..+ ..| +...+..+...+...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHc
Confidence 34455666677777777777775554 44666777777777777777777777777766 334 455666666777777
Q ss_pred CCHHHHHHHHHHhHhhcCC-------------CCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290 665 GLVDKGCLLFKSMDSQYGM-------------QPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS 718 (796)
Q Consensus 665 g~~~~A~~~~~~~~~~~~~-------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 718 (796)
|++++|...|+++.+...- .|+ ...+..+..++.+.|++++|.+.+++. ...|+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777632110 111 144555555555555555555555554 34444
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.56 E-value=2.3e-06 Score=84.99 Aligned_cols=154 Identities=6% Similarity=-0.009 Sum_probs=68.4
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHH-HHHHHhc
Q 036290 552 LGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTL-IMAYAHH 629 (796)
Q Consensus 552 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l-i~~~~~~ 629 (796)
+..+...+...|+++.|...++...+.... +...+..+...|...|++++|...+++.+.. |+....... ...+...
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh
Confidence 333334444455555555555554444333 3344445555555555555555555333322 222211111 1123344
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCChHH
Q 036290 630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGYLED 705 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~ 705 (796)
++.+.|...+++..+ ..| +...+..+...+...|++++|+..|+++.+. .|+ ...+..++.++...|+.++
T Consensus 199 ~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 199 AADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred cccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCc
Confidence 444445555555444 233 3344444445555555555555555555422 222 3344444444444444444
Q ss_pred HHHHHH
Q 036290 706 AKHVIE 711 (796)
Q Consensus 706 A~~~~~ 711 (796)
|...++
T Consensus 274 a~~~~r 279 (287)
T 3qou_A 274 LASXYR 279 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.56 E-value=3.5e-07 Score=90.98 Aligned_cols=162 Identities=9% Similarity=-0.049 Sum_probs=130.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036290 581 NTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM 658 (796)
Q Consensus 581 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 658 (796)
+.+...+..+...+...|++++|...|++.+.. .+...+..+...+...|++++|...+++... ..|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 335566677888899999999999999776653 3778899999999999999999999999887 457654333322
Q ss_pred -HHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhc
Q 036290 659 -SACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS---PTVYRSLLSGCRIH 732 (796)
Q Consensus 659 -~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~ 732 (796)
..+...++.+.|...+++... ..|+ ...+..+..++...|++++|.+.++++ ...|+ ...+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 346677788889999988883 4666 788889999999999999999999988 44454 56889999999999
Q ss_pred CChHHHHHHHHHHHc
Q 036290 733 GNKELGEWASEKLLL 747 (796)
Q Consensus 733 g~~~~A~~~~~~~~~ 747 (796)
|+.++|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999998764
No 109
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.55 E-value=1.4e-06 Score=85.35 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=26.8
Q ss_pred hhHhHHHHHHHhcCCcchHHHHHhcCCC--C-C---HhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036290 484 YICSSLIKSYVNFGQLDNSFEFSNGAER--L-D---MASWGAMMSALVHQGHNHEAVTIFHSLVE 542 (796)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 542 (796)
..+-.+...+.+.|++++|...|+.+.+ | + ...+..+..++.+.|++++|...|++..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3344444444455555555555444432 1 1 23344444444445555555555554443
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=1.3e-07 Score=83.13 Aligned_cols=98 Identities=9% Similarity=-0.047 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036290 652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSG 728 (796)
Q Consensus 652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 728 (796)
..+..+...+.+.|++++|+..|+++. .+.|+ +..|..+..+|.+.|++++|++.|++. ...| ++..|..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLC---IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 344455555566666666666666665 23444 555556666666666666666666655 3333 34556666666
Q ss_pred HHhcCChHHHHHHHHHHHccCCCC
Q 036290 729 CRIHGNKELGEWASEKLLLLLPKN 752 (796)
Q Consensus 729 ~~~~g~~~~A~~~~~~~~~~~p~~ 752 (796)
+...|++++|+..+++++++.|++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCH
Confidence 666666666666666666666654
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.54 E-value=1.7e-06 Score=74.26 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036290 516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYA 595 (796)
Q Consensus 516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 595 (796)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|+++.|...++.+.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------- 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------- 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---------------
Confidence 34555666666677777777777665542 23344444455555555555555555555444322
Q ss_pred hcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 036290 596 KCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLF 674 (796)
Q Consensus 596 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~ 674 (796)
.+...+..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...+
T Consensus 67 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 67 ------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 23344555556666666666666666666653 23 4555666666777777777777777
Q ss_pred HHhH
Q 036290 675 KSMD 678 (796)
Q Consensus 675 ~~~~ 678 (796)
+++.
T Consensus 127 ~~~~ 130 (136)
T 2fo7_A 127 QKAL 130 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.51 E-value=1.5e-06 Score=79.11 Aligned_cols=151 Identities=9% Similarity=-0.007 Sum_probs=105.7
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHH-HHhcCChH
Q 036290 556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMA-YAHHGLVS 633 (796)
Q Consensus 556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~-~~~~g~~~ 633 (796)
...+...|+++.|...++...+.... +...+..+..++...|++++|...++..+.. |+...+..+... +...++..
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccc
Confidence 33444555555555555554443322 5667777888888889999999988665543 333333222211 22223344
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCChHHHHHH
Q 036290 634 EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGYLEDAKHV 709 (796)
Q Consensus 634 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~ 709 (796)
.|...+++..+ ..| +...+..+...+...|++++|...|+++. ...|+ ...+..+..++...|+.++|...
T Consensus 92 ~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 92 PELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNIL---KVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH---HhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 57888999888 567 56778888899999999999999999998 45565 55788899999999999999988
Q ss_pred HHh
Q 036290 710 IEI 712 (796)
Q Consensus 710 ~~~ 712 (796)
+++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=1.5e-07 Score=82.88 Aligned_cols=114 Identities=10% Similarity=-0.006 Sum_probs=81.8
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036290 639 FDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF 715 (796)
Q Consensus 639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 715 (796)
++++.+ +.| +...+..+...+...|++++|+..|+++.. ..|+ ...|..+..++...|++++|++.+++. ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444 455 444566666777788888888888887773 3454 667777888888888888888888776 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290 716 QP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 716 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
.| +...|..+..++...|++++|+..++++++++|+++....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 44 4567777888888888888888888888888887776543
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.51 E-value=3.2e-06 Score=79.69 Aligned_cols=130 Identities=7% Similarity=-0.112 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM 696 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 696 (796)
.+..+...+...|++++|.+.|++. +.|+...+..+...+...|++++|+..+++.... .|+ ...+..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 3456677788999999999999887 3568888999999999999999999999998844 454 7788899999
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 697 LSRNGYLEDAKHVIEIM-PFQP-S----------------PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
+...|++++|.+.+++. ...| + ...|..+..++...|++++|...++++++.+|++..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999887 2222 2 267888899999999999999999999999997643
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=2.5e-06 Score=85.70 Aligned_cols=154 Identities=7% Similarity=-0.052 Sum_probs=83.2
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHH
Q 036290 557 NSCAAIGAYQRTKSIHPFVIKLGFN-----TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLI 623 (796)
Q Consensus 557 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li 623 (796)
..+...|+++.|...+....+.... .....++.+...|...|++++|...+++.+.. . -..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667777777666655542110 01235555666666666666666666443321 1 123455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC-chHHHH
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANLQPS-------QATFVSVMSACSHKGLVDKGCLLFKSMDSQY---GMQPS-PDCYGC 692 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~ 692 (796)
..|.. |++++|+..|++..+ +.|+ ..++..+...+...|++++|+..|++..... +..+. ...+..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAA--VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHH--HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 66655 666666666666665 2221 2345555666666666666666666665321 11111 124445
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~ 713 (796)
++.++...|++++|...+++.
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 555566666666666666654
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1.5e-05 Score=79.40 Aligned_cols=159 Identities=11% Similarity=-0.048 Sum_probs=121.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCC----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C----HHHHHH
Q 036290 590 VIDAYAKCGDIKGARMAFDQSFNSN----D----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-S----QATFVS 656 (796)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~~~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ 656 (796)
.+..+...|++++|...+++..... + ...+..+...+...|++++|+..+++..+..... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999996655532 2 1133346666777889999999999998843332 3 236888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhc----CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 036290 657 VMSACSHKGLVDKGCLLFKSMDSQY----GMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-------PFQPS-PTVYR 723 (796)
Q Consensus 657 ll~~~~~~g~~~~A~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 723 (796)
+...|...|++++|..+++++.+.. +..+. ..++..++.+|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999988422 11222 457889999999999999999999876 22222 56888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHcc
Q 036290 724 SLLSGCRIHGN-KELGEWASEKLLLL 748 (796)
Q Consensus 724 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 748 (796)
.+..++.+.|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999999875
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.46 E-value=6.4e-07 Score=86.20 Aligned_cols=138 Identities=12% Similarity=-0.041 Sum_probs=102.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHH
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDM 696 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~ 696 (796)
+-.+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 34566777888899999988888876 3464445445555778889999999999755411 1 111 2367778899
Q ss_pred HHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 697 LSRNGYLEDAKHVIEIMP---FQPS--PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
+.+.|++++|++.|++.. ..|. ...+.....++.+.|+.++|...+++++..+|+ +.++..|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999882 2143 346777888889999999999999999999998 777666655
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.45 E-value=5.6e-06 Score=83.18 Aligned_cols=185 Identities=8% Similarity=-0.069 Sum_probs=118.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHhC--C-CC--chhHHHHH
Q 036290 521 MSALVHQGHNHEAVTIFHSLVEA----GEKP-DEYILGTILNSCAAIGAYQRTKSIHPFVIKLG--F-NT--EVYVASAV 590 (796)
Q Consensus 521 i~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l 590 (796)
...|...|++++|...|.+..+. +-.+ -..+|..+...+...|+++.|...++...+.- . .+ ....+..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555566666666666655332 1001 12355666667777777777777777665531 1 11 23567778
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQPS-QATFVSV 657 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l 657 (796)
...|.. |++++|+..+++.+.. . ...++..+...|...|++++|+..|++..+. +..+. ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 888888 9999999999766542 1 1457888899999999999999999998872 11111 1256666
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCCc---hHHHHHHHHHHhcCChHHHHH
Q 036290 658 MSACSHKGLVDKGCLLFKSMDSQYGMQPSP---DCYGCLVDMLSRNGYLEDAKH 708 (796)
Q Consensus 658 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~ 708 (796)
..++...|++++|...|++.. ...-.++. .....++..+ ..|+.+.+.+
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 677778899999999999887 31111121 2233444444 5677666555
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=6e-06 Score=82.37 Aligned_cols=163 Identities=11% Similarity=-0.045 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCC--C------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--HH
Q 036290 586 VASAVIDAYAKCGDIKGARMAFDQSFNSN--D------VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ---PS--QA 652 (796)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 652 (796)
.+...+..+...|++++|.+.+.+.+... . ...+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 33445666777888888887775444321 1 122334555667778888888888887753211 11 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhC-C------CCC-CH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-----PDCYGCLVDMLSRNGYLEDAKHVIEIM-P------FQP-SP 719 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~~ 719 (796)
+|+.+...|...|++++|..+++++.......|+ ..++..++.+|.+.|++++|.+.+++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777778888888888888888887632222222 257778888888888888888888776 1 111 14
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHcc
Q 036290 720 TVYRSLLSGCRIHGNKELG-EWASEKLLLL 748 (796)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 748 (796)
.+|..+..++.+.|+.++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6777888888888888888 7778877754
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.43 E-value=0.00091 Score=71.50 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 036290 431 DVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT 477 (796)
Q Consensus 431 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 477 (796)
.+..+|+++... .+-+...|...+.-+.+.|+.+.|..+++.....
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 456677777664 2344566666666677778888888888888887
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.41 E-value=3e-05 Score=72.87 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=94.6
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----chHHHHHHHHHHHHhCCCCchhHHH
Q 036290 513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIG----AYQRTKSIHPFVIKLGFNTEVYVAS 588 (796)
Q Consensus 513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 588 (796)
++..+..+...|...+++++|...|++..+.| +...+..+-..+.. + +.++|.+.++...+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45555666666666677777777777766654 34444445555555 4 6666777766665554 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhccCCCCC----hhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036290 589 AVIDAYAK----CGDIKGARMAFDQSFNSND----VIVYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVS 656 (796)
Q Consensus 589 ~li~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 656 (796)
.|...|.. .+++++|.+.|++.....+ ...+..|...|.. .+++++|...|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 56666655 5667777777766665554 5666666666666 55667777777766663 223334444
Q ss_pred HHHHHhcc-C-----CHHHHHHHHHHhHhh
Q 036290 657 VMSACSHK-G-----LVDKGCLLFKSMDSQ 680 (796)
Q Consensus 657 ll~~~~~~-g-----~~~~A~~~~~~~~~~ 680 (796)
|...|... | ++++|..+|+...+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 44444322 2 666666666666533
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.39 E-value=7e-07 Score=78.33 Aligned_cols=101 Identities=10% Similarity=-0.000 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
+...+..+...+.+.|++++|...|++..+ +.| +...|..+..++...|++++|+..|+++. .+.|+ +..|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al---~l~P~~~~~~~~ 109 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF---ALGKNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH---hhCCCCcHHHHH
Confidence 566778888889999999999999999998 667 67778888899999999999999999998 45676 888899
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM-PFQPSPT 720 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 720 (796)
+..+|.+.|++++|.+.|++. ...|+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999987 5566654
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.37 E-value=9.5e-07 Score=80.55 Aligned_cols=129 Identities=10% Similarity=0.070 Sum_probs=100.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH-HHhcCCh
Q 036290 627 AHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM-LSRNGYL 703 (796)
Q Consensus 627 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 703 (796)
...|++++|...+++..+ ..| +...+..+...+...|++++|...|+++... .|+ ...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 456788889888888887 445 6677888888999999999999999998843 454 6777788888 7788998
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 704 --EDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 704 --~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
++|.+.++++ ...| +...|..+...+...|++++|...++++++.+|+++.....+.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999887 3444 4678888888999999999999999999999999876654443
No 124
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.36 E-value=2.1e-05 Score=74.71 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=38.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRD---YPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH---CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 445667777888888888777744 344 245667777788888888888777766
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=6.3e-07 Score=78.22 Aligned_cols=102 Identities=12% Similarity=-0.011 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036290 652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSG 728 (796)
Q Consensus 652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 728 (796)
..+..+...+...|++++|...|+++.. ..|+ ...|..+..++.+.|++++|.+.+++. ...| ++..|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3344455566666677777776666662 2443 555666666667777777777766665 2333 34556666666
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 729 CRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 729 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
+...|++++|...++++++++|+++...
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 7777777777777777777777666543
No 126
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.34 E-value=3.4e-06 Score=93.23 Aligned_cols=150 Identities=9% Similarity=-0.020 Sum_probs=93.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036290 527 QGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMA 606 (796)
Q Consensus 527 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 606 (796)
.|++++|.+.+++..+.. +-+...+..+...+...|++++|.+.++...+.... +...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888776542 234566777777777788888888888777775443 466777777777777888888777
Q ss_pred HhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc---CCHHHHHHHHHHhHhh
Q 036290 607 FDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK---GLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 607 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~~~ 680 (796)
+++.+.. .+...+..+...|...|++++|.+.+++..+ ..| +...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 7655543 3566777777777778888888888777777 445 455666777777777 7777788777777733
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.33 E-value=2.8e-06 Score=72.12 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV 694 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 694 (796)
..+......|.+.|++++|++.|++..+ +.| +...|..+..++.+.|++++|+..++++. .+.|+ ...|..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCI---RLDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH---HhhhhhhHHHHHHH
Confidence 3455667777888888888888888777 456 56677777788888888888888888877 34555 67777888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHH
Q 036290 695 DMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSL 725 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l 725 (796)
.++...|++++|.+.|++. .+.|+. ..+..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 8888888888888888776 455543 334433
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00016 Score=72.03 Aligned_cols=223 Identities=9% Similarity=0.035 Sum_probs=161.7
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-C
Q 036290 524 LVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAIG-AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC-G-D 599 (796)
Q Consensus 524 ~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 599 (796)
..+.+..++|+++++++... .|+. ..|+.--..+...+ .++++.++++.+.....+ +..+|+.-...+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 34445667899999998876 4443 44555444555566 588999999998887766 677777777777776 6 8
Q ss_pred HHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC--
Q 036290 600 IKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVS--------EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGL-- 666 (796)
Q Consensus 600 ~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~-- 666 (796)
+++++++++.++.. .+...|+--.-.+.+.|.++ ++++.++++.+ ..| |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccc
Confidence 89999999777765 47788887666666666666 89999999998 456 77788888888877776
Q ss_pred -----HHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCh--------------------HHHHHHHHhC-CC----
Q 036290 667 -----VDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYL--------------------EDAKHVIEIM-PF---- 715 (796)
Q Consensus 667 -----~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~---- 715 (796)
+++++++++++. ...|+ ...|..+-..+.+.|+. .+..++..++ ..
T Consensus 219 ~~~~~~~eELe~~~~aI---~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSI---HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 789999999888 34666 77777777777777654 3344444444 21
Q ss_pred ---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-ccCCCCCc
Q 036290 716 ---QPSPTVYRSLLSGCRIHGNKELGEWASEKLL-LLLPKNDA 754 (796)
Q Consensus 716 ---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~ 754 (796)
.+.+..+..|+..|...|+.++|.++++.+. +.||-...
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 2567788999999999999999999999987 67885443
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=5.3e-06 Score=77.38 Aligned_cols=134 Identities=13% Similarity=-0.007 Sum_probs=69.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-C--
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL----ANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-S-- 686 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~-- 686 (796)
....+..+...+...|++++|...+++..+ .+..| ...++..+...+...|++++|...+++......-.+ +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 334455555555555566655555555443 11112 223455555566666666666666665553211112 1
Q ss_pred --chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 687 --PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPSP----TVYRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 687 --~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
...+..+..++...|++++|.+.+++. ...++. .++..+...+...|++++|.+.+++++++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 334555666666666666666666554 111111 23455556666666666666666666654
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.27 E-value=6.3e-06 Score=73.90 Aligned_cols=127 Identities=10% Similarity=-0.069 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV 694 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 694 (796)
..|..+...+...|++++|...+++..+ ..| +...+..+...+...|++++|...+++.... .|+ ...+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 4566777888889999999999998887 445 6677888888889999999999999988844 454 77888889
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCChHHHHHHHHHHHcc
Q 036290 695 DMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSL--LSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
.++...|++++|.+.+++. ...| +...+..+ +..+...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999887 3334 44455333 33477889999999999887654
No 131
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=5.5e-06 Score=68.32 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHH
Q 036290 650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP---SPTVYRS 724 (796)
Q Consensus 650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ 724 (796)
+...+..+...+...|++++|...++++.+. .|+ ...+..+..++...|++++|.+.+++. ...| +...|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 4455666777788888888888888888743 343 667788888888999999999888887 3444 4678888
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHccCCCCC
Q 036290 725 LLSGCRIH-GNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 725 l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 753 (796)
+..++... |++++|.+.++++++..|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 89999999 999999999999999999775
No 132
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.24 E-value=0.00052 Score=67.62 Aligned_cols=166 Identities=5% Similarity=-0.127 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHhcCCcccHHH-HHHHHHHhcccC--cHHHHHHHHHHHHHhCCCCCchhHhHHHHHH----Hhc---CC
Q 036290 429 DADVLKTFCNIWESGVEVNGCT-FFYVVETCCRSE--NQQMVGQIHGAIIKTGFSSCGYICSSLIKSY----VNF---GQ 498 (796)
Q Consensus 429 ~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 498 (796)
.++|+.++..+.. +.|+..| |+.--..+...+ +++++.+.++.+.... |-+..+++.-...+ ... ++
T Consensus 49 s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3456666666555 3343322 233223333333 5555666555555543 33333443332222 233 45
Q ss_pred cchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------hHH
Q 036290 499 LDNSFEFSNGAER---LDMASWGAMMSALVHQGHNH--EAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA------YQR 567 (796)
Q Consensus 499 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~------~~~ 567 (796)
+++++++++.+.+ .+..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.-.......+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 5555555555543 34445555555555555555 6666666665543 2334444433333333333 444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290 568 TKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD 599 (796)
Q Consensus 568 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 599 (796)
+.+.++.++...+. |...|+.+...+.+.|+
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 55555554444433 44444444444444444
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.24 E-value=2.1e-06 Score=72.52 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGC 729 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 729 (796)
.+..+...+...|++++|.+.++++... .| +...+..++.++.+.|++++|...++++ .. +.+..+|..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3444445555555555555555555422 22 2444555555555555555555555554 11 22344555566666
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 730 RIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 730 ~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
...|++++|...++++++.+|+++..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~ 114 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAK 114 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 666666666666666666666555443
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.23 E-value=2.6e-05 Score=72.60 Aligned_cols=129 Identities=14% Similarity=0.030 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC------C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC--C
Q 036290 585 YVASAVIDAYAKCGDIKGARMAFDQSFN------S--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQP--S 650 (796)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~ 650 (796)
..+..+...+...|++++|...+++.+. . .....+..+...+...|++++|...+++..+. +-.| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444555555555555555543332 1 13345666777777888888888887776552 1122 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 651 QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 651 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
...+..+...+...|++++|...+++......-..+ ..++..+..++...|++++|.+.+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 234667777888899999999998887643111122 344677888899999999999888764
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=3.3e-06 Score=75.74 Aligned_cols=98 Identities=17% Similarity=0.062 Sum_probs=47.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCR 730 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 730 (796)
+..+...+...|++++|+..|++... +.|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444444444455555554444442 2232 444444555555555555555555444 2222 2344555555555
Q ss_pred hcCChHHHHHHHHHHHccCCCCCc
Q 036290 731 IHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 731 ~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
..|++++|...++++++++|+++.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HccCHHHHHHHHHHHHHhCCCchH
Confidence 555555555555555555555555
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.22 E-value=5.7e-06 Score=72.56 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
+...+..+...+...|++++|...|++..+ ..| +...|..+..++...|++++|+..|+++.. +.|+ +..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHH
Confidence 555667777888888999999999988887 556 666777788888889999999999988873 4565 777888
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+..+|...|++++|.+.+++.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 888899999999999888877
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=2.7e-06 Score=71.57 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=73.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCR 730 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 730 (796)
+..+...+.+.|++++|+..++++.+ ..|+ ...|..+..++.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44555677788888888888888873 4565 777888888888889999999888887 4455 4567888888888
Q ss_pred hcCChHHHHHHHHHHHccCCCCCc
Q 036290 731 IHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 731 ~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
..|++++|...++++++.+|+++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999987653
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.20 E-value=3.1e-06 Score=72.54 Aligned_cols=114 Identities=9% Similarity=-0.027 Sum_probs=66.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
+...|..+...+...|++++|.+.+++..+ ..| +...+..+...+...|++++|...++++.+. .|+ ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~ 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHH
Confidence 445566666666777777777777777666 344 4555666666666667777777766666632 333 455555
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHG 733 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 733 (796)
+..++.+.|++++|.+.+++. ...|+ ...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666555 22332 234444444444433
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=3.4e-06 Score=70.36 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=58.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGC 729 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 729 (796)
.+..+...+...|++++|...+++.... .| +...+..+..++...|++++|.+.+++. ...| +...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444445555555666666666555522 23 2445555556666666666666666555 2223 345566666666
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290 730 RIHGNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 730 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
...|++++|...++++++.+|+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 6666777777777777666666655443
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.18 E-value=1.4e-05 Score=78.92 Aligned_cols=191 Identities=10% Similarity=-0.087 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHH
Q 036290 550 YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYA 627 (796)
Q Consensus 550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~ 627 (796)
..+..+...+...|+++.|...++...+.... +...+..+..+|.+.|++++|...+++.+.. .+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444445555566666666666655554333 5667777888888888899988888776664 36778888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHH
Q 036290 628 HHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 628 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 706 (796)
..|++++|...|++..+ +.|+. ..+...+....+ ...+.... ..... ....+......+...+ .|++++|
T Consensus 84 ~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRWN-SIEER-RIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHHH-HHHHT-CCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHHH-HHHHH-HHhhhHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999877 34422 112222222111 11122222 12212 3445555555554433 6899999
Q ss_pred HHHHHhC-CCCCCHHHH-HHHHHHHHhc-CChHHHHHHHHHHHccCC
Q 036290 707 KHVIEIM-PFQPSPTVY-RSLLSGCRIH-GNKELGEWASEKLLLLLP 750 (796)
Q Consensus 707 ~~~~~~~-~~~p~~~~~-~~l~~~~~~~-g~~~~A~~~~~~~~~~~p 750 (796)
.+.+++. ...|+.... ..+...+.+. +..++|.++++++.+..+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 9988877 567765433 3443334444 678899999998887543
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.1e-06 Score=72.94 Aligned_cols=93 Identities=9% Similarity=-0.112 Sum_probs=50.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCR 730 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 730 (796)
+..+...+...|++++|+..|++..+. .|+ ...|..+..++.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 444444455555555555555555522 333 455555555555555555555555554 2233 3445555555666
Q ss_pred hcCChHHHHHHHHHHHccC
Q 036290 731 IHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 731 ~~g~~~~A~~~~~~~~~~~ 749 (796)
..|++++|...++++++++
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 6666666666666666666
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.17 E-value=8.6e-06 Score=82.82 Aligned_cols=129 Identities=7% Similarity=-0.039 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----------------QATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
+...|..+...+.+.|++++|...|++..+ +.|+ ...|..+..++.+.|++++|+..++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455677778888888889999888888887 4554 3678888888999999999999999988
Q ss_pred hhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHcc
Q 036290 679 SQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELG-EWASEKLLLL 748 (796)
Q Consensus 679 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 748 (796)
. +.|+ ...|..+..+|...|++++|.+.|++. ...| +...+..+..++.+.|+.++| ...++++++.
T Consensus 224 ~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 224 E---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp H---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3565 788888999999999999999999887 4455 456788888888888988888 5677777753
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.16 E-value=0.00022 Score=70.79 Aligned_cols=166 Identities=10% Similarity=0.079 Sum_probs=90.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 036290 520 MMSALVHQGHNHEAVTIFHSLVEAGE-KPDEY----ILGTILNSCAAIGAYQRTKSIHPFVIKLGFN-TEVYVASAVIDA 593 (796)
Q Consensus 520 li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 593 (796)
.+..+...|++++|...+++..+... .|+.. .+..+...+...++++.|...++........ ++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-------- 152 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-------- 152 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--------
Confidence 35667778888888888888765321 12211 1122333444445555555555555442211 1100
Q ss_pred HHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHhccCCH
Q 036290 594 YAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKL----A-NLQP-SQATFVSVMSACSHKGLV 667 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p-~~~t~~~ll~~~~~~g~~ 667 (796)
....+++.+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++
T Consensus 153 --------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 153 --------------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred --------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 0012355555556666666666666655552 1 1122 223566677777777777
Q ss_pred HHHHHHHHHhHhh---cCCCCC-chHHHHHHHHHHhcCC-hHHHHHHHHhC
Q 036290 668 DKGCLLFKSMDSQ---YGMQPS-PDCYGCLVDMLSRNGY-LEDAKHVIEIM 713 (796)
Q Consensus 668 ~~A~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 713 (796)
++|..++++...- .+..+. ..+|..+..+|.+.|+ +++|.+.+++.
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 7777777766532 122222 5667777777777774 47777766655
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=8.6e-06 Score=71.28 Aligned_cols=104 Identities=8% Similarity=-0.063 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036290 651 QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRS 724 (796)
Q Consensus 651 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 724 (796)
...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|.+.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3344444555555555555555555554 33444 345555566666666666666666554 2223 3455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290 725 LLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 725 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
+..++...|++++|...++++++.+|+++.++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 666666667777777777777777776655443
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.15 E-value=1.5e-05 Score=68.17 Aligned_cols=106 Identities=12% Similarity=-0.023 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036290 650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLL 726 (796)
Q Consensus 650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 726 (796)
+...+..+...+...|++++|...+++.. ...|+ ...+..+..++...|++++|.+.+++. ...| +...|..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 33445555555666666666666666655 23342 455555666666666666666666555 2222 345555566
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCcceEE
Q 036290 727 SGCRIHGNKELGEWASEKLLLLLPKNDAAHVL 758 (796)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 758 (796)
.++...|++++|...++++++.+|++...+..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 123 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHH
Confidence 66666666666666666666666655554433
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.15 E-value=1.7e-05 Score=67.40 Aligned_cols=115 Identities=15% Similarity=0.034 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCL 693 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 693 (796)
...+..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...+++.... .|+ ...+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 86 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHH
Confidence 344555666666677777777777766662 34 4555666666666677777777777666632 333 5556666
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 036290 694 VDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNK 735 (796)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 735 (796)
+.++.+.|++++|.+.+++. ...| +...+..+..++...|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 66666667777666666665 2233 445555555555555543
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=8.9e-06 Score=69.08 Aligned_cols=91 Identities=10% Similarity=-0.021 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--------ch
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--------PD 688 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------~~ 688 (796)
.+..+...+.+.|++++|++.|++..+ +.| +...|..+..+|...|++++|++.+++..+. .|+ ..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHHH
Confidence 345566666666677777777766666 445 4455666666666666777766666666522 222 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 689 CYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+|..+..++...|++++|++.+++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555443
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=3.6e-06 Score=71.57 Aligned_cols=97 Identities=8% Similarity=0.024 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHH
Q 036290 652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF----QPS----PTV 721 (796)
Q Consensus 652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~ 721 (796)
..+..+...+.+.|++++|+..|+++. .+.|+ ...|..+..+|.+.|++++|++.+++. .+ .++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al---~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAI---ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 456778889999999999999999998 45676 788999999999999999999999887 22 222 246
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 722 YRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
|..+..++...|++++|++.++++++..|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 788888899999999999999999998875
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.13 E-value=2.7e-05 Score=65.49 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHH
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCL 693 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 693 (796)
...|..+...+...|++++|.+.++++.+. .| +..++..+...+...|++++|..+++++... .| +...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHH
Confidence 445666667777777777777777777663 34 4556666777777777777777777777633 23 35666777
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036290 694 VDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRI 731 (796)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 731 (796)
..++...|++++|.+.++++ ...| +...+..+...+..
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 77777777777777777766 3333 34445555444433
No 150
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.13 E-value=3e-06 Score=83.74 Aligned_cols=171 Identities=9% Similarity=-0.048 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036290 583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMS 659 (796)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 659 (796)
+...+..+...+.+.|++++|...|++.+.. .+...|..+...|...|++++|...+++..+ +.| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4556777888899999999999999776653 3788899999999999999999999999988 567 6677888889
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 036290 660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELG 738 (796)
Q Consensus 660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 738 (796)
++...|++++|...|+++.+. .|+ ...+...+....+.++...... .......++......+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 999999999999999988743 333 1122222222222222111111 222334445544444433 3 36899999
Q ss_pred HHHHHHHHccCCCCCcceEEecC
Q 036290 739 EWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 739 ~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.+.++++++.+|++......+..
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~ 177 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQAC 177 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHH
T ss_pred HHHHHhhhccccchhhhhhHHHH
Confidence 99999999999987766555543
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.13 E-value=8.5e-05 Score=71.44 Aligned_cols=138 Identities=13% Similarity=0.068 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 036290 586 VASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS--QATFVSVMSACS 662 (796)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 662 (796)
....+..++...|++++|.++|+..... |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 4455677888999999999999655544 433356666678889999999999998665421 121 235777788999
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 036290 663 HKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSL 725 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 725 (796)
..|++++|+..|++.... ...|. .........++.+.|+.++|...|+++ ...|+...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999999998722 33254 446677888999999999999999998 456664444433
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.11 E-value=1.9e-05 Score=70.73 Aligned_cols=124 Identities=14% Similarity=0.075 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036290 585 YVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC 661 (796)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~ 661 (796)
..+..+...+...|++++|...+++.+.. .+...+..+...+...|++++|...+++..+ ..| +...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 34455666677777777777777554432 3667777788888888888888888888887 345 566777777888
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCC-chHH--HHHHHHHHhcCChHHHHHHHHhC
Q 036290 662 SHKGLVDKGCLLFKSMDSQYGMQPS-PDCY--GCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 662 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
...|++++|...++++... .|+ ...+ ..++..+.+.|++++|.+.+++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 8888888888888888743 443 3344 33444467778888888877654
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.11 E-value=6.3e-05 Score=74.84 Aligned_cols=124 Identities=12% Similarity=0.087 Sum_probs=90.6
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HHHHH
Q 036290 590 VIDAYAKCGDIKGARMAFDQSFNS----ND----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLA-NLQPS-----QATFV 655 (796)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~t~~ 655 (796)
+...+...|++++|...+++.+.. .+ ..+|+.+...|...|++++|...+++..+. ...|+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 455566777888887777555432 11 347888888999999999999999988731 01222 25788
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC-chHHHHHHHHHHhcCChHHH-HHHHHhC
Q 036290 656 SVMSACSHKGLVDKGCLLFKSMDSQY---GMQPS-PDCYGCLVDMLSRNGYLEDA-KHVIEIM 713 (796)
Q Consensus 656 ~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 713 (796)
.+...|...|++++|+.++++..... +.... ..+|..+..+|.+.|++++| ...+++.
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 88899999999999999999887431 11111 56788899999999999999 7767664
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.08 E-value=6.5e-06 Score=70.12 Aligned_cols=108 Identities=12% Similarity=0.029 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036290 650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLL 726 (796)
Q Consensus 650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 726 (796)
+...+..+...+...|++++|...++++... .| +...+..++.++...|++++|.+.+++. ...| +...|..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4556777888899999999999999999844 44 4788889999999999999999999987 3344 567889999
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 727 SGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
..+...|++++|...++++++.+|+++.++..++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 121 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 9999999999999999999999999887765553
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.08 E-value=1.9e-05 Score=66.88 Aligned_cols=92 Identities=9% Similarity=-0.041 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV 694 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 694 (796)
..|..+...+...|++++|+..|++..+ ..| +...|..+..++...|++++|+..+++..+ +.|+ ...+..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHH
Confidence 4566677778888888888888888887 455 566777888888888888888888888873 3565 67788888
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036290 695 DMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~ 713 (796)
.++...|++++|.+.+++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHH
Confidence 8888888888888888876
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.00015 Score=71.92 Aligned_cols=188 Identities=7% Similarity=-0.066 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCC-hHHHHHHH
Q 036290 565 YQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG--DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGL-VSEAMEIF 639 (796)
Q Consensus 565 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~ 639 (796)
++.+..+++.+....+. +..+|+.-..++.+.+ .+++++.+++.++.. .|...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 46677777777766555 6667777666777766 378888888665553 477788877777777777 58888888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhcc--------------CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc---
Q 036290 640 DKMKLANLQP-SQATFVSVMSACSHK--------------GLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN--- 700 (796)
Q Consensus 640 ~~m~~~g~~p-~~~t~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--- 700 (796)
+++.+ ..| |...|+.....+.+. +.++++++++.... ...|+ ...|+.+-..+.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai---~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhccCc
Confidence 88888 445 666676655544433 45788888888887 34666 66666555555554
Q ss_pred --------CChHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290 701 --------GYLEDAKHVIEIM-PFQPSPTVYRSLLSG-----CRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 701 --------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 759 (796)
+.++++++.++++ ...||. .|..+..+ ....|..++....++++.++||-....|.-|
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 4578888888887 566765 34332222 2245778899999999999999877766544
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.07 E-value=1.2e-05 Score=69.33 Aligned_cols=99 Identities=8% Similarity=-0.147 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036290 650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLL 726 (796)
Q Consensus 650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 726 (796)
+...+..+...+...|++++|...|++.... .|+ ...+..+..++...|++++|...+++. ...| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3444555555555555555555555555522 233 445555555555566666666555554 2222 344555566
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCC
Q 036290 727 SGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
.++...|++++|...++++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6666666666666666666666555
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.05 E-value=7.1e-06 Score=70.97 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 689 CYGCLVDMLSRNGYLEDAKHVIEIM-PF-------QPSP-TVY----RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
.|..+..++.+.|++++|+..+++. .. .|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6667777777777777777777665 33 7765 578 899999999999999999999999999999887
Q ss_pred eEEecC
Q 036290 756 HVLLSK 761 (796)
Q Consensus 756 ~~~l~~ 761 (796)
.--+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655443
No 159
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=6.8e-06 Score=83.60 Aligned_cols=131 Identities=8% Similarity=-0.014 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA------------------TFVSVMSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
+..+...+.+.|++++|...|++..+ +.|+.. .|..+..++.+.|++++|+..++++..
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 258 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT- 258 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 44445555556666666666666555 334332 566677777788888888888887773
Q ss_pred cCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 681 YGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSG-CRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 681 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
+.|+ ...|..+..+|...|++++|.+.|++. ...|+. ..+..+... ....+..+.+...++++++..|+++.
T Consensus 259 --~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 259 --EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 3454 667777888888888888888888777 455543 445555444 23446677777888888888777654
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=4.8e-06 Score=77.46 Aligned_cols=148 Identities=7% Similarity=-0.036 Sum_probs=81.5
Q ss_pred HHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----------------H
Q 036290 593 AYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-----------------A 652 (796)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------------~ 652 (796)
.....|+++.+.+.+ ++... .....+..+...+...|++++|...|++..+ +.|+. .
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIY-DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGG-GCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchh-hCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHHH
Confidence 344456666666666 32221 1445566777778888888888888888887 33321 4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGC 729 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 729 (796)
.+..+..++...|++++|+..++++... .|+ ...+..+..+|...|++++|.+.+++. ...| +...+..+..++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 5666666667777777777777776632 343 566666777777777777777777665 3333 344555555555
Q ss_pred HhcCChHHHH-HHHHHHH
Q 036290 730 RIHGNKELGE-WASEKLL 746 (796)
Q Consensus 730 ~~~g~~~~A~-~~~~~~~ 746 (796)
...|+.+++. ..+..++
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5555555444 3333333
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.02 E-value=3.7e-05 Score=68.72 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
+...|..+...+...|++++|+..|++..+ +.| +...|..+..++...|++++|+..++++.. +.|+ ...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 455677888888999999999999999988 556 667788888899999999999999999883 4566 788888
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+..+|.+.|++++|.+.+++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999887
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.02 E-value=3.6e-05 Score=66.84 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=76.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
+...+..+...+...|++++|...|++... ..| +...|..+..++...|++++|+..|+++.. +.|+ +..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 91 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL---MDINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHH
Confidence 445566677788888999999999998887 456 666777788888889999999999998883 3555 677888
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+..+|...|++++|.+.+++.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 888999999999999998877
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.00 E-value=2.2e-05 Score=71.35 Aligned_cols=91 Identities=7% Similarity=0.006 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HhccCCH--HHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSA-CSHKGLV--DKGCLLFKSMDSQYGMQPS-PDCYGC 692 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~-~~~~g~~--~~A~~~~~~~~~~~~~~p~-~~~~~~ 692 (796)
.|..+...|...|++++|...|++..+ ..| +...+..+..+ +...|++ ++|...++++... .|+ ...+..
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 120 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL---DSNEITALML 120 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---CCCcHHHHHH
Confidence 333444444444444444444444443 222 22333333333 3344444 4444444444421 222 333444
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+..++...|++++|.+.++++
T Consensus 121 la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHH
Confidence 444444444444444444443
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.99 E-value=2e-05 Score=67.10 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=54.7
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCC-c---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 036290 658 MSACSHKGLVDKGCLLFKSMDSQYGMQPS-P---DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS----PTVYRSLLSG 728 (796)
Q Consensus 658 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 728 (796)
...+...|++++|...|+.+.+. .|+ . ..+..+..++.+.|++++|.+.+++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455556666666666665533 233 2 35555666666666666666666655 22232 3445566666
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 729 CRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 729 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
+...|++++|...++++++..|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 666677777777777777666665544
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=2.6e-05 Score=69.32 Aligned_cols=133 Identities=13% Similarity=-0.002 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----ch
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-PS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PD 688 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 688 (796)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666677777777777777776552111 11 135666777788888888888888887643211122 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 036290 689 CYGCLVDMLSRNGYLEDAKHVIEIM----PFQPS----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLP 750 (796)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 750 (796)
++..+..++...|++++|.+.+++. ...++ ...+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6777888888899999998888776 11111 24677788888999999999999999887644
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.96 E-value=2.2e-05 Score=79.81 Aligned_cols=93 Identities=15% Similarity=0.006 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCL 693 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 693 (796)
...|..+..+|.+.|++++|+..+++..+ +.| +...|..+..++...|++++|+..|+++. .+.|+ ...+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l 270 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL---QLYPNNKAAKTQL 270 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHCCCCHHHHHHH
Confidence 46788888889999999999999999988 556 66778888889999999999999999988 34565 6778888
Q ss_pred HHHHHhcCChHHH-HHHHHhC
Q 036290 694 VDMLSRNGYLEDA-KHVIEIM 713 (796)
Q Consensus 694 ~~~~~~~g~~~~A-~~~~~~~ 713 (796)
..++.+.|+.++| .+.+++|
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998888 3455554
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.95 E-value=9e-05 Score=61.43 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCL 693 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 693 (796)
...+..+...+...|++++|...+++..+ ..| +...+..+...+...|++++|...+++.... .|+ ...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 34566667777778888888888888777 345 5666777777778888888888888887733 444 6677778
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 036290 694 VDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSL 725 (796)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 725 (796)
..++...|++++|.+.+++. ...|+ ...+..+
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 88888888888888888776 44553 3344433
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.93 E-value=9.9e-05 Score=63.40 Aligned_cols=95 Identities=5% Similarity=-0.124 Sum_probs=74.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290 614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG 691 (796)
Q Consensus 614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 691 (796)
.+...|..+...+...|++++|...|++..+ ..| +...+..+..++...|++++|...+++..+. .|+ ...+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHH
Confidence 3566777788888888888888888888877 445 5667777788888888888888888888743 454 67788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
.+..++...|++++|.+.+++.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888888888888888876
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.91 E-value=1.4e-05 Score=85.42 Aligned_cols=129 Identities=9% Similarity=-0.036 Sum_probs=79.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY 702 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 702 (796)
.+.+.|++++|.+.+++..+ ..| +...|..+..++.+.|++++|++.++++. .+.|+ ...+..+..+|.+.|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAI---ELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCC
Confidence 34456677777777777766 445 45566667777777777777777777776 33454 5666677777777777
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChHHHHHHHH-----------HHHccCCCCCcceEE
Q 036290 703 LEDAKHVIEIM-PFQP-SPTVYRSLLSG--CRIHGNKELGEWASE-----------KLLLLLPKNDAAHVL 758 (796)
Q Consensus 703 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~~~~~~~ 758 (796)
+++|.+.+++. ...| +...+..+..+ +.+.|++++|++.++ ++++.+|+...++..
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence 77777777766 2233 22344444444 666677777777777 666777766555443
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.91 E-value=3.7e-06 Score=78.26 Aligned_cols=136 Identities=12% Similarity=-0.019 Sum_probs=99.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--------------ch
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--------------PD 688 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------------~~ 688 (796)
......|+++++.+.|+.-.+ ..+ ....+..+...+...|++++|...|++......-.|+ ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334445666666666653332 112 3345677778889999999999999999843222221 16
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 689 CYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
.+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|+++.++..+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 8888999999999999999999988 3444 56788999999999999999999999999999999988887766
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.90 E-value=2.8e-05 Score=66.06 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC-CCC----chHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM-QPS----PDCYG 691 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~p~----~~~~~ 691 (796)
.|..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...++++.....- .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455566666666777777766666663 33 4455566666666667777777666666533110 111 44555
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLL 726 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 726 (796)
.+..++.+.|++++|.+.+++. ...|+...+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5666666666666666666555 3334444444333
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.90 E-value=3.4e-05 Score=64.77 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHH
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVD 695 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 695 (796)
.+..+...+.+.|++++|...+++..+ ..| +...|..+..++...|++++|+..|++.. .+.|+ ...+..+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHAR---MLDPKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence 344556667777788888888877777 456 55666677777777788888888887777 34565 666777777
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC
Q 036290 696 MLSRNGYLEDAKHVIEIM-PFQPS 718 (796)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~-~~~p~ 718 (796)
++...|++++|.+.+++. ...|+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC
Confidence 788888888888777766 44443
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=1.1e-05 Score=67.45 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhHhhcCC---CCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 036290 664 KGLVDKGCLLFKSMDSQYGM---QPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKEL 737 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 737 (796)
.|++++|+..|++.. .. .|+ ...+..+..+|...|++++|++.+++. ...| +..++..+..++...|++++
T Consensus 3 ~g~~~~A~~~~~~al---~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHH---SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHH---HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 344555555555554 22 122 344555555555555555555555554 2222 33445555555555555555
Q ss_pred HHHHHHHHHccCCCCCc
Q 036290 738 GEWASEKLLLLLPKNDA 754 (796)
Q Consensus 738 A~~~~~~~~~~~p~~~~ 754 (796)
|+..++++++..|+++.
T Consensus 80 A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 80 GVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhCCCcHH
Confidence 55555555555555543
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00016 Score=62.88 Aligned_cols=108 Identities=11% Similarity=-0.004 Sum_probs=80.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDC 689 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 689 (796)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...+...|++++|...+++.... .|+ ...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 566777788888888888888888888887 5565 566777778888888888888888888733 454 677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036290 690 YGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLS 727 (796)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 727 (796)
+..+..++...|++++|.+.+++. ...|+ ...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 778888888888888888888877 34443 344443333
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=3.1e-05 Score=69.05 Aligned_cols=74 Identities=11% Similarity=-0.030 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC-cceEEec
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND-AAHVLLS 760 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~ 760 (796)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456666777777777777777777666 3334 456677777777777777777777777777777776 4443443
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.84 E-value=7.3e-05 Score=61.31 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=62.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC---CchHH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP---SPDCY 690 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p---~~~~~ 690 (796)
+...|..+...+...|++++|...+++..+ ..| +...+..+...+...|++++|...+++..+. .| +...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~ 79 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVW 79 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHH
Confidence 344555666667777777777777777766 334 4556666667777777777777777777632 33 35666
Q ss_pred HHHHHHHHhc-CChHHHHHHHHhC
Q 036290 691 GCLVDMLSRN-GYLEDAKHVIEIM 713 (796)
Q Consensus 691 ~~l~~~~~~~-g~~~~A~~~~~~~ 713 (796)
..+..++.+. |++++|.+.+++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6777777777 7777777777765
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.82 E-value=0.019 Score=57.14 Aligned_cols=171 Identities=8% Similarity=-0.059 Sum_probs=94.8
Q ss_pred HhcCCchHHHHHHHHHHhcCCcccHHH-HHHHHHHhcccC-cHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhc-C-Cc
Q 036290 424 CFNCCDADVLKTFCNIWESGVEVNGCT-FFYVVETCCRSE-NQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNF-G-QL 499 (796)
Q Consensus 424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 499 (796)
.+.+..++|++++.++.. +.|+..| |+.--..+...+ .++++.++++.+.... +-+..+++.-...+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334445567777777666 3343322 333333333344 4666777776666554 44555566555555554 5 66
Q ss_pred chHHHHHhcCCCC---CHhhHHHHHHHHHHcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc----
Q 036290 500 DNSFEFSNGAERL---DMASWGAMMSALVHQGHNH--------EAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA---- 564 (796)
Q Consensus 500 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---- 564 (796)
++++++++.+.+. +...|+--...+.+.+.++ ++++.++++.+.. .-|...|+.--..+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 7777777777653 4445554444444444444 7777777776653 3455556555555555543
Q ss_pred ---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290 565 ---YQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD 599 (796)
Q Consensus 565 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 599 (796)
++++.+.++..+...+. |...|+.+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 45666666666665544 55555555555555443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.79 E-value=0.00012 Score=62.14 Aligned_cols=105 Identities=8% Similarity=-0.038 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HH
Q 036290 651 QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PF----QPS----PT 720 (796)
Q Consensus 651 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~ 720 (796)
...+..+...+...|++++|...+++.... .| +...+..++.++...|++++|...+++. .. .++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 345777888899999999999999999844 34 4778889999999999999999999987 22 233 67
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290 721 VYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 759 (796)
+|..+..++...|++++|...++++++..| ++.....+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l 118 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 888899999999999999999999999998 45444333
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00071 Score=71.55 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=14.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHc
Q 036290 522 SALVHQGHNHEAVTIFHSLVEA 543 (796)
Q Consensus 522 ~~~~~~~~~~~A~~~~~~m~~~ 543 (796)
..+.+.|++++|++.|.++.+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~ 33 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDK 33 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3455667777777777776654
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.76 E-value=9.7e-05 Score=78.59 Aligned_cols=125 Identities=10% Similarity=-0.003 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----------------QATFVSVMSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
..|..+...+.+.|++++|...|++..+ +.|+ ...|..+..+|.+.|++++|+..++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG- 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 3455555666666666666666666665 3332 35566666677777777777777777763
Q ss_pred cCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHH-HHHHHHH
Q 036290 681 YGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGE-WASEKLL 746 (796)
Q Consensus 681 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 746 (796)
+.|+ ...|..+..+|...|++++|...|+++ ...|+ ...+..+..++.+.|+.+++. ..+++++
T Consensus 346 --~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 --LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred --cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 566667777777777777777777766 44553 345666666666666666554 3344444
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.71 E-value=8.5e-05 Score=79.39 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=72.8
Q ss_pred HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKG 670 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A 670 (796)
+.+.|++++|.+.+++.+.. .+...|..+..+|.+.|++++|++.+++..+ +.| +...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44556666666666544432 3566777777777777888888888877777 455 556677777777788888888
Q ss_pred HHHHHHhHhhcCCCCC-chHHHHHHHH--HHhcCChHHHHHHHH
Q 036290 671 CLLFKSMDSQYGMQPS-PDCYGCLVDM--LSRNGYLEDAKHVIE 711 (796)
Q Consensus 671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 711 (796)
.+.++++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888877733 444 4455555555 677788888888777
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.69 E-value=0.00022 Score=60.41 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=63.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHH
Q 036290 621 TLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ----ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGC 692 (796)
Q Consensus 621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ 692 (796)
.+...+...|++++|...|++..+ ..|+. ..+..+..++...|++++|...++++... .|+ +..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHH
Confidence 445566777788888888887776 33433 35666667777788888888888877744 333 455667
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290 693 LVDMLSRNGYLEDAKHVIEIM-PFQPS 718 (796)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~-~~~p~ 718 (796)
+..++.+.|++++|.+.++++ ...|+
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 777888888888888888776 33344
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=7.1e-05 Score=76.03 Aligned_cols=107 Identities=9% Similarity=-0.035 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch------------------HHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPD------------------CYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..+..+...+.+.|++++|...|++... +.|+.. +|..+..+|.+.|++++|++.+++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3466677888999999999999999883 345532 7889999999999999999999987
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290 714 -PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761 (796)
Q Consensus 714 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 761 (796)
...| +...|..+..++...|++++|+..++++++++|+++.++..|..
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4445 56789999999999999999999999999999999999888866
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.65 E-value=0.00016 Score=63.97 Aligned_cols=128 Identities=17% Similarity=0.085 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCC----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CHH
Q 036290 586 VASAVIDAYAKCGDIKGARMAFDQSFNS----ND----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN----LQP-SQA 652 (796)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~ 652 (796)
++..+...|...|++++|...+++.+.. ++ ...+..+...+...|++++|.+.+++..+.. -.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555555555555433321 11 1356667777777888888887777765421 111 134
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQY---GMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
.+..+...+...|++++|...+++..... +..+. ..++..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56667777888888888888888776331 11111 456777888888889999988888764
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.65 E-value=0.00013 Score=64.94 Aligned_cols=100 Identities=6% Similarity=-0.015 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLA-------NL---------QP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~---------~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
.+......+.+.|++++|+..|++..+. .- .| +...|..+..++.+.|++++|+..++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al-- 90 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL-- 90 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--
Confidence 4455556666667777777666666552 00 22 23567777888888999999999998888
Q ss_pred cCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036290 681 YGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPT 720 (796)
Q Consensus 681 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 720 (796)
.+.|+ ...|..+..+|...|++++|.+.+++. ...|+..
T Consensus 91 -~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 -KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp -HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred -hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 34566 778888899999999999999988887 4566543
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.62 E-value=0.00062 Score=74.07 Aligned_cols=157 Identities=8% Similarity=-0.051 Sum_probs=123.7
Q ss_pred CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036290 599 DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGL----------VSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG 665 (796)
Q Consensus 599 ~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 665 (796)
..++|++.+++.+.. .+...|+.--..+...|+ ++++++.++++.+ ..| +..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 345667777555543 355667766666666666 8999999999998 567 7778888888888888
Q ss_pred --CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 036290 666 --LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG-YLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIH------- 732 (796)
Q Consensus 666 --~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 732 (796)
+++++++.++++.+. .|. ..+|+.-..++.+.| .++++++.++++ ...| |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999944 555 777888888888888 899999999998 5555 667888887776653
Q ss_pred -------CChHHHHHHHHHHHccCCCCCcceEEec
Q 036290 733 -------GNKELGEWASEKLLLLLPKNDAAHVLLS 760 (796)
Q Consensus 733 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 760 (796)
+.++++.+.++++++.+|++..+|..+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~ 233 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR 233 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 5578999999999999999999998773
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.61 E-value=0.0014 Score=64.99 Aligned_cols=149 Identities=7% Similarity=-0.028 Sum_probs=113.4
Q ss_pred HHHHHHHHhccCCC--CChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC-HHHHHHH
Q 036290 600 IKGARMAFDQSFNS--NDVIVYNTLIMAYAHHG--LVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGL-VDKGCLL 673 (796)
Q Consensus 600 ~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~-~~~A~~~ 673 (796)
+++++.+++..+.. .+..+|+.-.-.+...| .+++++.+++++.+ ..| |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56677777555542 47788888777777877 48999999999999 567 77888887777778887 6999999
Q ss_pred HHHhHhhcCCCCC-chHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----
Q 036290 674 FKSMDSQYGMQPS-PDCYGCLVDMLSRN--------------GYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIH---- 732 (796)
Q Consensus 674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---- 732 (796)
++.+... .|+ ...|+....++.+. +.++++++.+.+. ...| |...|+.+-..+.+.
T Consensus 168 ~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 9999944 454 66777666666554 4578888888887 3444 667887776666555
Q ss_pred -------CChHHHHHHHHHHHccCCCCC
Q 036290 733 -------GNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 733 -------g~~~~A~~~~~~~~~~~p~~~ 753 (796)
+..+++++.++++++.+|++.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 457899999999999999873
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.60 E-value=0.00035 Score=60.41 Aligned_cols=94 Identities=9% Similarity=-0.098 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhh----
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-------------QATFVSVMSACSHKGLVDKGCLLFKSMDSQ---- 680 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~---- 680 (796)
.+......+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..+++....
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344566677888999999999998888 5555 227888888999999999999999988821
Q ss_pred cCCCCC-chHH----HHHHHHHHhcCChHHHHHHHHhC
Q 036290 681 YGMQPS-PDCY----GCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 681 ~~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..+.|+ ...| .....++...|++++|++.|++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 123888 7778 89999999999999999999987
No 189
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.58 E-value=0.00012 Score=73.87 Aligned_cols=237 Identities=10% Similarity=0.001 Sum_probs=169.7
Q ss_pred CCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036290 77 NDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCV 156 (796)
Q Consensus 77 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 156 (796)
-.+.+|+.|..+..+.|.+.+|.+.|-+ ..|...|..+|.+..+.|.+++-+..+.-.++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 4457899999999999999999887644 45666788999999999999999999887766533 3445568899999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCC------------------------CCce
Q 036290 157 SMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISS------------------------DDVG 212 (796)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 212 (796)
+.+++.+..+++ -.|+..-...+.+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 998876544443 135555556667777788888888888877652 3678
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcC-CCChHHHHHHHHhh
Q 036290 213 CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEV-ECSISIVNALIDMY 291 (796)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~ 291 (796)
+|..+-.+|...+.+.-|.-+--.+.- .......++..|-..|-+++...+++... |. .....+++-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 999999999999998887766444432 22233456777888999999888888766 33 34667888888888
Q ss_pred hcCCCHHHHHHHHhhcC----CC-------CcchHHHHHHHHHhCCCccHHH
Q 036290 292 IKSSGMDYAFKVFERMA----DK-------DVISWNTLFGGFSENKNPGQTA 332 (796)
Q Consensus 292 ~~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~~~~~~a~ 332 (796)
+|-. .++..+-++... -| ....|.-++-.|+...+++.|.
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 8763 333333333222 22 4566888888787777777654
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.56 E-value=9.7e-05 Score=61.49 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHH
Q 036290 630 GLVSEAMEIFDKMKLANL-QP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 706 (796)
|++++|+..|++..+.+. .| +...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHHH
Confidence 444445555555444211 12 2233444444455555555555555554422 233 44444455555555555555
Q ss_pred HHHHHhC
Q 036290 707 KHVIEIM 713 (796)
Q Consensus 707 ~~~~~~~ 713 (796)
.+.+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.54 E-value=0.0004 Score=73.80 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCL 693 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 693 (796)
...|..+..+|.+.|++++|+..+++..+ +.| +...|..+..+|...|++++|+..|+++. .+.|+ ...+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l 391 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQI 391 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHH
Confidence 46788888999999999999999999998 556 67788888999999999999999999998 56776 7888889
Q ss_pred HHHHHhcCChHHHH-HHHHhC
Q 036290 694 VDMLSRNGYLEDAK-HVIEIM 713 (796)
Q Consensus 694 ~~~~~~~g~~~~A~-~~~~~~ 713 (796)
..++.+.|+.++|. ..+.+|
T Consensus 392 ~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 392 SMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988876 455666
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.53 E-value=0.00012 Score=75.28 Aligned_cols=121 Identities=10% Similarity=-0.018 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVD 695 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 695 (796)
..+..+...+.+.|++++|++.|++..+. .|+.. .... .+... ...|. ...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 44666667777777777777777777651 11000 0000 00000 01122 344445555
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290 696 MLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 759 (796)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..|
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 555555555555555544 3333 234455555555555555555555555555555555444443
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.46 E-value=0.00061 Score=69.92 Aligned_cols=135 Identities=10% Similarity=-0.039 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 036290 584 VYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACS 662 (796)
Q Consensus 584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~ 662 (796)
...+..+...+.+.|++++|.+.|++.+.. +.... .....++..+ ..| +...|..+..+|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~------------~~~~~----~~~~~~~~~~--~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSR----AAAEDADGAK--LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHH----HHSCHHHHGG--GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------hhcCc----cccChHHHHH--HHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999444320 00000 0000111111 223 3445666666667
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 036290 663 HKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGE 739 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 739 (796)
+.|++++|+..++++. .+.|+ ...+..+..+|...|++++|.+.++++ ...| +...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEAL---EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666 34554 566666777777777777777777665 3344 3445555555555555555544
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=4.1e-05 Score=66.07 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=59.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH----------HHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290 627 AHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLV----------DKGCLLFKSMDSQYGMQPS-PDCYGCLV 694 (796)
Q Consensus 627 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 694 (796)
.+.+++++|.+.+++..+ ..| +...|..+..++...+++ ++|+..|++.. .+.|+ ...|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHH
Confidence 344556666666666665 344 445555555555555443 34445444444 33444 34444444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290 695 DMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 759 (796)
.+|...|.+ .|+.. ...|++++|++.|+++++++|++..+...|
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 444444332 22221 012689999999999999999987665444
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0016 Score=68.82 Aligned_cols=158 Identities=8% Similarity=-0.047 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHH---HHHHHH-HHHhccCchHHHHHHHHHHHHh----CCCC-chhH
Q 036290 517 WGAMMSALVHQGHNHEAVTIFHSLVEA-GEKPDEY---ILGTIL-NSCAAIGAYQRTKSIHPFVIKL----GFNT-EVYV 586 (796)
Q Consensus 517 ~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~---t~~~ll-~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 586 (796)
+..+...|...|++++|.+.+...... +..++.. .....+ ..+...|+.+.+..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777888888888888888776432 1112221 122222 2334567788888777765542 2222 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC-------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC-CC-C--HH
Q 036290 587 ASAVIDAYAKCGDIKGARMAFDQSFNS-------N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA--NL-QP-S--QA 652 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p-~--~~ 652 (796)
+..+...|...|++++|..++++.... + ....+..++..|...|++++|..++++.... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777776433221 1 2345666666777777777777777665531 01 11 1 12
Q ss_pred HHHHHHHHHhccCCHHHHHHHH
Q 036290 653 TFVSVMSACSHKGLVDKGCLLF 674 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~ 674 (796)
.+..+...+...|++++|...|
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3444445556666666666554
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00015 Score=59.35 Aligned_cols=90 Identities=12% Similarity=0.040 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-------ch
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-------PD 688 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------~~ 688 (796)
..|..+...+...|++++|.+.|++..+ ..| +...+..+..++...|++++|+..++++. .+.|+ ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHHH
Confidence 3455555666666666666666666666 344 44555566666666666666666666665 34444 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 036290 689 CYGCLVDMLSRNGYLEDAKHVIE 711 (796)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~ 711 (796)
.+..+..++...|+.++|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 34444444555554444444433
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.34 E-value=0.00037 Score=75.80 Aligned_cols=148 Identities=5% Similarity=-0.068 Sum_probs=108.1
Q ss_pred HHHHHHHHhccCCC--CChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-CHHHHHHH
Q 036290 600 IKGARMAFDQSFNS--NDVIVYNTLIMAYAHHG--LVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG-LVDKGCLL 673 (796)
Q Consensus 600 ~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g-~~~~A~~~ 673 (796)
++++++.++..+.. .+..+|+.-.-.+.+.| +++++++.++++.+ ..| |...|+.-...+.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 66777777555543 36677777777777788 67999999999998 566 7777888777777888 88999999
Q ss_pred HHHhHhhcCCCCC-chHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 036290 674 FKSMDSQYGMQPS-PDCYGCLVDMLSRN--------------GYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKE 736 (796)
Q Consensus 674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 736 (796)
++++. ...|+ ...|.....++.+. +.+++|++.++++ ...| |...|..+...+.+.++.+
T Consensus 167 ~~~~I---~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 167 TDSLI---TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHTTT---TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHH---HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 98887 45665 66777766666653 5578888888777 4455 5678888888887777655
Q ss_pred H------------HHHHHHHHHccCCCC
Q 036290 737 L------------GEWASEKLLLLLPKN 752 (796)
Q Consensus 737 ~------------A~~~~~~~~~~~p~~ 752 (796)
+ |...|+++++++|..
T Consensus 244 ~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 244 VLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ceeeeeeccCCceEEEEeccceeccccc
Confidence 4 444466666777765
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.34 E-value=0.00034 Score=74.16 Aligned_cols=122 Identities=11% Similarity=-0.044 Sum_probs=75.0
Q ss_pred hcCChHHHHHHHHHHHHCC---CC---C-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhh----cC-CCCC-chHHHHHH
Q 036290 628 HHGLVSEAMEIFDKMKLAN---LQ---P-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQ----YG-MQPS-PDCYGCLV 694 (796)
Q Consensus 628 ~~g~~~~A~~~~~~m~~~g---~~---p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~~p~-~~~~~~l~ 694 (796)
..|++++|+.++++..+.. +- | ...+++.|..+|...|++++|..++++...- +| -.|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4455555555554443311 11 2 2245677777777777777777777766532 11 2233 56677788
Q ss_pred HHHHhcCChHHHHHHHHhC------CCCCC---H-HHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290 695 DMLSRNGYLEDAKHVIEIM------PFQPS---P-TVYRSLLSGCRIHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~------~~~p~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 749 (796)
.+|...|++++|..++++. -+.|| . .+...+..++...|.+++|+.+++++.+..
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776 12332 2 344555666777788888888888887643
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00012 Score=59.98 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------HH
Q 036290 650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-------PT 720 (796)
Q Consensus 650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~~ 720 (796)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++.+.|++++|++.+++. ...|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3445666667777778888888888777733 443 666777777777777887777777776 45554 34
Q ss_pred HHHHHHHHHHhcCChHHHHHH
Q 036290 721 VYRSLLSGCRIHGNKELGEWA 741 (796)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~ 741 (796)
.+..+..++...|+.+.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 455555555555555554443
No 200
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.22 E-value=0.0045 Score=61.55 Aligned_cols=139 Identities=12% Similarity=-0.001 Sum_probs=94.5
Q ss_pred CChhHHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc---cC-----CHHHHHHHHHHhHh
Q 036290 614 NDVIVYNTLIMAYA--HHG---LVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSH---KG-----LVDKGCLLFKSMDS 679 (796)
Q Consensus 614 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~---~g-----~~~~A~~~~~~~~~ 679 (796)
.+...|...+++.. ..+ ...+|..+|++..+ ..|+. ..|..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 36667777766543 333 35789999999998 77853 445444444421 11 11111122222111
Q ss_pred hcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 680 QYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 680 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
......++.+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.+++++.++|..++
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 1122444888888888888889999999999998 45688878878888899999999999999999999997754
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.15 E-value=0.00027 Score=60.92 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=74.3
Q ss_pred HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCCh----------HHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 036290 594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLV----------SEAMEIFDKMKLANLQP-SQATFVSVMSA 660 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 660 (796)
..+.+.+++|.+.++..+.. .+...|..+..++...+++ ++|+..|++..+ +.| +...|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 34567789999999776653 4888999899999988775 599999999999 778 56789999999
Q ss_pred HhccC-----------CHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 036290 661 CSHKG-----------LVDKGCLLFKSMDSQYGMQPSPDCYGCLV 694 (796)
Q Consensus 661 ~~~~g-----------~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 694 (796)
|...| ++++|++.|+++. .+.|+-..|..-+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl---~l~P~~~~y~~al 131 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAV---DEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHH---HhCCCCHHHHHHH
Confidence 98775 7888888888877 4577755554333
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.13 E-value=0.0012 Score=54.53 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHH
Q 036290 634 EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIE 711 (796)
Q Consensus 634 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 711 (796)
.|+..|++..+ ..| +...+..+...+...|++++|+..|++.... .|+ ...|..+..+|...|++++|.+.++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555555 334 4445555556666666666666666666522 333 4455556666666666666666655
Q ss_pred hC
Q 036290 712 IM 713 (796)
Q Consensus 712 ~~ 713 (796)
+.
T Consensus 78 ~a 79 (115)
T 2kat_A 78 SG 79 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 203
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.12 E-value=0.00029 Score=71.08 Aligned_cols=433 Identities=9% Similarity=0.021 Sum_probs=239.7
Q ss_pred ChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhcc
Q 036290 179 NPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSL 258 (796)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 258 (796)
.+.+|+.|..++.+.|.+.+|++-| +...|...|..+|.+..+.|.+++-+.++...++..-.| ..=+.|+-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4567777777777777777766544 334567778888888888888888888887776553333 333467788888
Q ss_pred CCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC------------------------CCcch
Q 036290 259 VADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD------------------------KDVIS 314 (796)
Q Consensus 259 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 314 (796)
.++..+.++++. .|+..-...+-+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 887776555543 34444445555666666777777666666542 37789
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290 315 WNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCR 394 (796)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 394 (796)
|..+-.+|...+.+.-|.-.--.+. ........++..|-..|.+++-..+++.-... -.....+++-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 9999999999999887755433332 22334456677788889998888887765521 13467788888888887
Q ss_pred cCChHHHHHHHHhCCC----C-------ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCc
Q 036290 395 CGAVEMAHSVFDNVSY----K-------NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSEN 463 (796)
Q Consensus 395 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 463 (796)
- +.++..+-++..-. | ....|.-++-.|.+..+++.|.... .+. .|+...-..+.....+..+
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltM---i~h--~~~Aw~h~~Fkdii~KVaN 349 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVAN 349 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT---TSC--HHHHCCGGGGTTTGGGCSC
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH---HhC--ChhhccHHHHHHHHHHcch
Confidence 5 44555554443322 2 3346888888888888888765432 110 1111111111222222222
Q ss_pred HHHHHHHHHHHHHhCCCCCchhHhHHHHHHH-------------hcCCcchHHHHHhcCCCCCHhh-HHHHHHHHHHcCC
Q 036290 464 QQMVGQIHGAIIKTGFSSCGYICSSLIKSYV-------------NFGQLDNSFEFSNGAERLDMAS-WGAMMSALVHQGH 529 (796)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~~~ 529 (796)
.+.-.+.....+ .-.+...+-|+..+. +.|++.-....+...+..|... -.++-..|....+
T Consensus 350 ~EiyYKAi~FYL----~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEED 425 (624)
T 3lvg_A 350 VELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED 425 (624)
T ss_dssp SHHHHHHHHHHT----TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH----HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Confidence 222222222211 222333344444443 4444444444444444433333 2334444555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036290 530 NHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQ 609 (796)
Q Consensus 530 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 609 (796)
++.- ..-|.+|-.-.....|.++ .++ .-...-..-...|-+.++++++..+.++
T Consensus 426 y~~L-------------------R~SId~ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk 479 (624)
T 3lvg_A 426 YQAL-------------------RTSIDAYDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK 479 (624)
T ss_dssp CHHH-------------------HHTTSSCCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST
T ss_pred HHHH-------------------HHHHHHhccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 4321 1111222222222222222 111 1122222334556777788877765521
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036290 610 SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLL 673 (796)
Q Consensus 610 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 673 (796)
.- .|.-.|...+..|+.+-|.++++-..+.| +...|...+..|...=+.+-++++
T Consensus 480 Dk------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 480 DS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 11 12222333455677777777777777644 445677777777666666666654
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0056 Score=52.32 Aligned_cols=112 Identities=13% Similarity=-0.108 Sum_probs=88.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCChHH
Q 036290 630 GLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR----NGYLED 705 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 705 (796)
+++++|.+.|++..+.| .|+.. |-..|...+.+++|.++|++..+. -++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998877 33433 666677777888899999988744 356777888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCC
Q 036290 706 AKHVIEIMPFQPSPTVYRSLLSGCRI----HGNKELGEWASEKLLLLLP 750 (796)
Q Consensus 706 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 750 (796)
|.+++++.-...++..+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988434577788888888887 7899999999999988743
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.04 E-value=0.00094 Score=55.07 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLP 750 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 750 (796)
...+..+..+|...|++++|.+.+++. ...| +...|..+..++...|++++|...+++++++.|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 444444555555555555555555444 2222 233444444445555555555555555554444
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.02 E-value=0.00069 Score=52.85 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEE
Q 036290 688 DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVL 758 (796)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 758 (796)
..+..+...+...|++++|.+.+++. ...| +...|..+..++...|++++|...++++++.+|+++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44555555666666666666666555 2222 34556666666666666666666666666666666555443
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.95 E-value=0.0032 Score=48.88 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV 694 (796)
Q Consensus 617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 694 (796)
..+..+...+...|++++|...+++..+ ..| +...+..+...+...|++++|...+++.... .|+ ...+..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~ 84 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCHHHHHHHH
Confidence 3445555555666666666666666655 233 3445555555666666666666666665522 333 44444444
Q ss_pred HHHHh
Q 036290 695 DMLSR 699 (796)
Q Consensus 695 ~~~~~ 699 (796)
.++.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.90 E-value=0.017 Score=49.25 Aligned_cols=82 Identities=10% Similarity=-0.099 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cC
Q 036290 594 YAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH----KG 665 (796)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g 665 (796)
|...+..++|.+.|++.....+...+..|...|.. .+++++|.++|++..+.| +...+..|...|.. .+
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCc
Confidence 33333444444444333334444444444444444 445555555555554432 23333344444443 44
Q ss_pred CHHHHHHHHHHhH
Q 036290 666 LVDKGCLLFKSMD 678 (796)
Q Consensus 666 ~~~~A~~~~~~~~ 678 (796)
++++|..+|++..
T Consensus 112 d~~~A~~~~~~Aa 124 (138)
T 1klx_A 112 NEKQAVKTFEKAC 124 (138)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555544
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.88 E-value=0.0028 Score=50.57 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
+...+..+...|...|++++|+..|++..+ ..| +...|..+..+|...|++++|...+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555556666666666666666655 334 34445555556666666666666665554
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.87 E-value=0.0045 Score=65.57 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290 618 VYNTLIMAYAHHGLVSEAMEIFDKMKL-----ANLQ-PS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 618 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
+++.|...|...|++++|+.++++..+ .|-. |+ ..+...+-.++...+.+++|..+++.+.+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554432 2222 32 233455556777788888888888887654
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.85 E-value=0.002 Score=51.53 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+...+..+...+...|++++|+..|+++.+ ..|+ ...|..+..+|...|++++|.+.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE---TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555677777778888888888888888773 3455 667777888888888888888877765
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.72 E-value=0.0019 Score=55.02 Aligned_cols=103 Identities=19% Similarity=0.035 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHH
Q 036290 666 LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNG---YLEDAKHVIEIM-PFQ-P--SPTVYRSLLSGCRIHGNKELG 738 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 738 (796)
....+.+.|.+.... + .++..+...+..++++.+ +.++++.++++. ... | +...+..|.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344555555555432 2 256777777788888877 555788777776 222 4 245667777788999999999
Q ss_pred HHHHHHHHccCCCCCcceEEecC-hhhHHhCCC
Q 036290 739 EWASEKLLLLLPKNDAAHVLLSK-RKRQREGNL 770 (796)
Q Consensus 739 ~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~~ 770 (796)
++.++.+++.+|++..+..+... .+.+...|+
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kdgl 123 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELERLIDKAMKKDGL 123 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhH
Confidence 99999999999998888776655 555666665
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.55 E-value=0.0057 Score=63.55 Aligned_cols=91 Identities=11% Similarity=-0.101 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHhHhhc--CCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 036290 664 KGLVDKGCLLFKSMDSQY--GMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM---------PFQPSP-TVYRSLLS 727 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~ 727 (796)
.|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|..++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666554321 12222 455666777777777777777777665 122333 45777777
Q ss_pred HHHhcCChHHHHHHHHHHHc-----cCCCCCc
Q 036290 728 GCRIHGNKELGEWASEKLLL-----LLPKNDA 754 (796)
Q Consensus 728 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~ 754 (796)
.|..+|++++|+.+++++++ +.|++|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 77777777777777777775 3455544
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.55 E-value=0.0036 Score=49.68 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=43.2
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCC-ch-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 036290 659 SACSHKGLVDKGCLLFKSMDSQYGMQPS-PD-CYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGN 734 (796)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~ 734 (796)
..+...|++++|...++++.+. .|+ .. .+..+..+|...|++++|.+.+++. ...|+. ..+.. +.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3455566666666666666522 343 34 5555666666666666666666555 233322 22211 34
Q ss_pred hHHHHHHHHHHHccCCCCC
Q 036290 735 KELGEWASEKLLLLLPKND 753 (796)
Q Consensus 735 ~~~A~~~~~~~~~~~p~~~ 753 (796)
..++...++++.+.+|+++
T Consensus 77 ~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHhccCcccc
Confidence 4455555555555555444
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.51 E-value=0.00088 Score=53.41 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQA-TFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
..+...|++++|.+.+++..+ ..| +.. .+..+..++...|++++|...|++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555 233 233 44444455555555555555555554
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.50 E-value=0.0062 Score=63.45 Aligned_cols=60 Identities=13% Similarity=-0.045 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 688 DCYGCLVDMLSRNGYLEDAKHVIEIM---------PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
.+++.|+.+|...|++++|..++++. +..|+. .+++.|...|...|++++|+.+++++++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555444 112222 3455555555555555555555555554
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.34 E-value=0.0091 Score=47.93 Aligned_cols=69 Identities=16% Similarity=0.047 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290 688 DCYGCLVDMLSRNGYLEDAKHVIEIM-----P----FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756 (796)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 756 (796)
.....|+..+.+.|++..|..+++.. . -.+...++..|..++.+.|+++.|...++++++++|+++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445677777777777777777665 1 112346778888888888888888888888888888887663
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.09 E-value=0.018 Score=44.88 Aligned_cols=66 Identities=9% Similarity=-0.070 Sum_probs=43.1
Q ss_pred CchHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 686 SPDCYGCLVDMLSRNGY---LEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 686 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
++..+..+..++...++ .++|..++++. ...| +...+..+...+.+.|++++|+..++++++.+|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35566666666654443 57777777766 4444 3456666666677777777777777777777776
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.06 E-value=0.26 Score=56.57 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=71.9
Q ss_pred HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHH
Q 036290 492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSI 571 (796)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 571 (796)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3455677777777776663 456788888888888888888888887642 23344444446666655555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036290 572 HPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDK 641 (796)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 641 (796)
.+.....|- ++....+|.+.|++++|.+++ .+.+++++|..+-+.
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~-------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLL-------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH-------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH-------------------HHcCChHHHHHHHHH
Confidence 444444331 233344556667777777666 566777777776554
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.89 E-value=0.021 Score=46.57 Aligned_cols=92 Identities=22% Similarity=0.046 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHH
Q 036290 666 LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLED---AKHVIEIM-PFQ-P--SPTVYRSLLSGCRIHGNKELG 738 (796)
Q Consensus 666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 738 (796)
.+..+.+-|...... +. |+..+-..+..++.+..+..+ ++.++++. ... | .......|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555544433 22 666666677777777776555 77777766 222 3 123445667778888999999
Q ss_pred HHHHHHHHccCCCCCcceEEe
Q 036290 739 EWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 739 ~~~~~~~~~~~p~~~~~~~~l 759 (796)
++.++.+++.+|+|..+..+.
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999887765544
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.88 E-value=0.14 Score=58.77 Aligned_cols=102 Identities=17% Similarity=0.081 Sum_probs=53.8
Q ss_pred HHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 036290 593 AYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCL 672 (796)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 672 (796)
.....|++++|.++. +.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...+
T Consensus 661 ~~l~~~~~~~A~~~~-~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 661 LALKVGQLTLARDLL-TDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHTCHHHHHHHH-TTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hhhhcCCHHHHHHHH-Hhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 345567777777766 333 3556777777777777777777777776643 2233333333444444444
Q ss_pred HHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 673 LFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 673 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+.+..... | -++.-..+|.+.|++++|++++.++
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 43333321 1 1222333444455555555555554
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.79 Score=40.01 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=91.8
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 036290 591 IDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKG 670 (796)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 670 (796)
.+.....|+++.|.++.++ + .+...|..|.......|+++-|.+.|.+..+ +..+.--|...|+.+.-
T Consensus 12 F~LAL~lg~l~~A~e~a~~-l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKK-L--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHH-H--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHH-h--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 4455678899999888733 2 5678899999999999999999999988764 44444455667777776
Q ss_pred HHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290 671 CLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKL 745 (796)
Q Consensus 671 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 745 (796)
.++-+....+ | -++.-...+.-.|+++++.+++.+.+..|... ......|..+.|.++.+.+
T Consensus 80 ~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 6665554433 2 24555666777899999999999886444321 2233467888888887765
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.47 E-value=0.02 Score=59.49 Aligned_cols=85 Identities=9% Similarity=-0.011 Sum_probs=59.9
Q ss_pred cCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhh----cC-CCCC-chHHHHHHH
Q 036290 629 HGLVSEAMEIFDKMKLA---NLQP----SQATFVSVMSACSHKGLVDKGCLLFKSMDSQ----YG-MQPS-PDCYGCLVD 695 (796)
Q Consensus 629 ~g~~~~A~~~~~~m~~~---g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~~p~-~~~~~~l~~ 695 (796)
.|++++|+.++++..+. -+-| ...+++.|..+|...|++++|+.+++++..- +| -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34556666666555431 1122 2356788888888899999998888887632 12 2334 677889999
Q ss_pred HHHhcCChHHHHHHHHhC
Q 036290 696 MLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~ 713 (796)
+|...|++++|..++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 999999999999999886
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.46 E-value=0.15 Score=50.68 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
+...|..+...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.++++.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444443344444444444444444442 2444444334444444444444444444444
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.20 E-value=0.074 Score=55.29 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhh----c-CCCCC-chHHH
Q 036290 625 AYAHHGLVSEAMEIFDKMKLAN---LQPS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQ----Y-GMQPS-PDCYG 691 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~-~~~p~-~~~~~ 691 (796)
.+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.+++++..- + .-.|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445666777777766665421 1121 234666777777777777777777766532 1 12223 45677
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 036290 692 CLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
.|...|...|++++|..++++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 7778888888888888877765
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.19 E-value=0.18 Score=39.09 Aligned_cols=62 Identities=6% Similarity=-0.039 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290 615 DVIVYNTLIMAYAHHGL---VSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD 678 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 678 (796)
+...+..+..++...++ .++|..++++..+ ..| +......+...+...|++++|+..|+++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555543333 5677777777776 556 44455555566677777777777777776
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.51 E-value=0.22 Score=42.32 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCChHHH
Q 036290 632 VSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG---LVDKGCLLFKSMDSQYGMQP--SPDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 632 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 706 (796)
...+.+-|.+..+.|. ++..+...+..++++.+ +.++++.++++..+. . .| ...++..|.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666776666554 67777777888888888 677999999999865 2 35 367777888899999999999
Q ss_pred HHHHHhC-CCCCCHH
Q 036290 707 KHVIEIM-PFQPSPT 720 (796)
Q Consensus 707 ~~~~~~~-~~~p~~~ 720 (796)
.+.++.+ ...|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 9999988 6677643
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.86 E-value=8.7 Score=41.58 Aligned_cols=122 Identities=10% Similarity=-0.042 Sum_probs=79.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHH
Q 036290 630 GLVSEAMEIFDKMKLANLQPSQAT----FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLED 705 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 705 (796)
.+.+.|...+....+.+ ..+... ...+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37899999998887543 223322 233334445556355666666654422 3443334445555668899999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290 706 AKHVIEIMPFQP--SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759 (796)
Q Consensus 706 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 759 (796)
|...|+.|+..+ ...-..-+..++...|+.++|..+++.+.+ + .+.|-.|
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 999999996443 334445667778889999999999999975 3 2456566
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.50 E-value=0.32 Score=40.69 Aligned_cols=52 Identities=13% Similarity=-0.100 Sum_probs=31.8
Q ss_pred CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290 701 GYLEDAKHVIEIM---PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753 (796)
Q Consensus 701 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 753 (796)
++.++|.++|+.+ ..+- ..+|-....--.++|+...|++++.+++...|...
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 5666666666655 1111 45565555556677777777777777777666543
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.15 E-value=0.39 Score=39.84 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=61.5
Q ss_pred CCCchHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290 684 QPSPDCYGCLVDMLSRNGYLE---DAKHVIEIM-PFQP-SP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 684 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
.|+..+-..+..++.+..+.+ +++.++++. ...| +. .-...|.-++.+.|++++|++..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 566777777788888877544 566677666 2233 23 34456777788999999999999999999999888765
Q ss_pred EecC-hhhHHhCCC
Q 036290 758 LLSK-RKRQREGNL 770 (796)
Q Consensus 758 ~l~~-~~~~~~~~~ 770 (796)
+..- .+.|...|+
T Consensus 116 Lk~~Ie~~i~kdGl 129 (144)
T 1y8m_A 116 LKSMVEDKIQKETL 129 (144)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhch
Confidence 5544 555655665
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.75 E-value=0.12 Score=49.19 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc-----cCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhc-
Q 036290 632 VSEAMEIFDKMKLANLQPS---QATFVSVMSACSH-----KGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRN- 700 (796)
Q Consensus 632 ~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~- 700 (796)
...|...+++..+ +.|+ ...|..+...|.. -|+.++|.+.|++.. .+.|+ ..++....+.+++.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhc
Confidence 3456666666666 5565 3456666666655 367777777777666 34552 55666666666663
Q ss_pred CChHHHHHHHHhC
Q 036290 701 GYLEDAKHVIEIM 713 (796)
Q Consensus 701 g~~~~A~~~~~~~ 713 (796)
|+.++|.+.+++.
T Consensus 254 gd~~~a~~~L~kA 266 (301)
T 3u64_A 254 NNRAGFDEALDRA 266 (301)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6677777666665
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.72 E-value=0.43 Score=37.87 Aligned_cols=66 Identities=11% Similarity=0.047 Sum_probs=36.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCC-----CCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290 653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGM-----QPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS 718 (796)
Q Consensus 653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 718 (796)
.+..+...+...|+++.|...++.+.+...- .+...++..|..++.+.|++++|...++++ ...|+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3444555555666666666666655543210 122455666666666677777776666665 34454
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.56 E-value=0.26 Score=46.84 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=51.5
Q ss_pred HHHHHHHHhccCCC-C---ChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc-cCCH
Q 036290 600 IKGARMAFDQSFNS-N---DVIVYNTLIMAYAHH-----GLVSEAMEIFDKMKLANLQPS--QATFVSVMSACSH-KGLV 667 (796)
Q Consensus 600 ~~~A~~~~~~~~~~-~---~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~-~g~~ 667 (796)
...|...+++.++- | +-..|..+...|.+. |+.++|.+.|++..+ +.|+ ..++......++. .|+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence 44555555444442 3 345677777777773 778888888888877 5663 5566666666666 4778
Q ss_pred HHHHHHHHHhHh
Q 036290 668 DKGCLLFKSMDS 679 (796)
Q Consensus 668 ~~A~~~~~~~~~ 679 (796)
+++.+++++...
T Consensus 257 ~~a~~~L~kAL~ 268 (301)
T 3u64_A 257 AGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888888877773
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.17 E-value=7.1 Score=34.00 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=81.0
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036290 560 AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIF 639 (796)
Q Consensus 560 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 639 (796)
...|+++.|.++.+.+ -+...|..|.+.....|+++-|.+.| +... -+..+.-.|...|+.+...++-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy-~~~~-----D~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIY-QTQH-----SFDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHH-HHTT-----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHH-HHhC-----CHHHHHHHHHHhCCHHHHHHHH
Confidence 4556666666665554 25667777888888888888888777 3222 2455555667778877766665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 640 DKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMP 714 (796)
Q Consensus 640 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (796)
+.....| -++.....+...|+++++.++|.+.. .-|... -.....|-.+.|.++.++++
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 5555544 24555556677899999999986653 222211 11123567778888888874
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.03 E-value=1 Score=36.82 Aligned_cols=74 Identities=9% Similarity=-0.001 Sum_probs=45.8
Q ss_pred CCCchHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290 684 QPSPDCYGCLVDMLSRNGYL---EDAKHVIEIM-PFQP--SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV 757 (796)
Q Consensus 684 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 757 (796)
.|++.+--.+..++.+..+. .+++.++++. ...| ....+..|.-++.+.|+++.|++..+.+++.+|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45555555666666666543 3455666555 2223 1234556666677777888888888888888887766543
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.43 E-value=6.4 Score=32.23 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=85.5
Q ss_pred HhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCch---hHhHHHHHHHhcCCcc
Q 036290 424 CFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGY---ICSSLIKSYVNFGQLD 500 (796)
Q Consensus 424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 500 (796)
.-.|..++..++..+.... .+..-|+.+|.-....-+-+...+.++.+-+ ..|.. -...++.+|.+.+...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~C~NlKrVi~C~~~~n~~s 91 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINNTLN 91 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTTCCC
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcHhhhcHHHHHHHHHHhcchH
Confidence 4467777778877777653 3444556666555555555555555554422 11111 1223444454444333
Q ss_pred hHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 036290 501 NSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGF 580 (796)
Q Consensus 501 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 580 (796)
...+..+..+...|+-+.-.+++.++.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 92 --------------e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 --------------EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3345556777788888888888887533 3477888888888888888888888888888877776
Q ss_pred C
Q 036290 581 N 581 (796)
Q Consensus 581 ~ 581 (796)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 237
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.00 E-value=2.8 Score=31.84 Aligned_cols=91 Identities=11% Similarity=0.015 Sum_probs=66.4
Q ss_pred hhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 036290 54 SENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMY 133 (796)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 133 (796)
-......++|.-|-+-+...+. ...+--+-++++...|++++|..+.+.+.-||+..|-++-. .+.|..+.+...+
T Consensus 16 gTG~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 16 GSGQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 3344567777777776665553 33343444567789999999999999999999999988766 4788888888888
Q ss_pred HHHHHCCCCCCcccHH
Q 036290 134 VDMKTNGFMPNEFAVG 149 (796)
Q Consensus 134 ~~m~~~~~~p~~~t~~ 149 (796)
.++..+| .|....|.
T Consensus 92 ~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTCS-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 8888776 44444443
No 238
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.45 E-value=3.1 Score=31.71 Aligned_cols=92 Identities=10% Similarity=0.002 Sum_probs=66.3
Q ss_pred hhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 036290 53 LSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKM 132 (796)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 132 (796)
.-......++|.-|-+-+...+. ...+--+-++++...|++++|..+.+.+.-||+..|-++-.. +.|..+.+...
T Consensus 16 ~gTG~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 16 IGTGNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHH
Confidence 33444567777777777665553 333434445677899999999999999999999999887664 78888888888
Q ss_pred HHHHHHCCCCCCcccHH
Q 036290 133 YVDMKTNGFMPNEFAVG 149 (796)
Q Consensus 133 ~~~m~~~~~~p~~~t~~ 149 (796)
+.++..+| .|....|.
T Consensus 92 L~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCC-CHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 88887766 34433443
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.17 E-value=17 Score=35.39 Aligned_cols=166 Identities=11% Similarity=0.021 Sum_probs=103.2
Q ss_pred hhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCCHhhHHHHHHhhcc
Q 036290 183 GCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVV----SSMLFEGITMDKYTFINALQGCSL 258 (796)
Q Consensus 183 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~ 258 (796)
|.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +.+.+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45556668889999999988542 234566778877766655 556677899999888888887766
Q ss_pred CCCch-----HHHHHHHHHHHhc--CCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHH
Q 036290 259 VADFD-----IGRQIHGLIIRSE--VECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQT 331 (796)
Q Consensus 259 ~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (796)
...-+ -..+...+-.+.| ..-|+.....+-..|.+.+++.+|..-|-.-.+++...+..++..+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 55322 1233344444555 3347888888899999999999999888532223335665555555444433222
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHH
Q 036290 332 ASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLAL 374 (796)
Q Consensus 332 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 374 (796)
--.+- ..+| .+...+++..|..+++...
T Consensus 187 dlfia--------------RaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 PLYCA--------------RAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHH--------------HHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH--------------HHHH-HHHHhCCHHHHHHHHHHHH
Confidence 11111 1222 2344567777777665544
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.12 E-value=17 Score=35.19 Aligned_cols=131 Identities=6% Similarity=-0.030 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHH----HHHHHhcCCcccHHHHHHHHHHhcc
Q 036290 385 TSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKT----FCNIWESGVEVNGCTFFYVVETCCR 460 (796)
Q Consensus 385 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 460 (796)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44666777888888888887543 23445566776665554 4455566888888887777776655
Q ss_pred cCc-HHHHHHHHHHHHH----hCC--CCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHH
Q 036290 461 SEN-QQMVGQIHGAIIK----TGF--SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVH 526 (796)
Q Consensus 461 ~~~-~~~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 526 (796)
... -..-.++++.+++ .|- ..++.....+...|.+.|++.+|..-|-.....+...+..++.-+..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 321 1122344444433 332 23667778888888888888888876653332344555544444433
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.01 E-value=21 Score=34.85 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhc
Q 036290 588 SAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEI----FDKMKLANLQPSQATFVSVMSACSH 663 (796)
Q Consensus 588 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 663 (796)
.++..=|.+.+++++|.+++ ..-...+.+.|+...|-.+ ++-..+.++++|......++..+..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL------------~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDIL------------ASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCHHHHHHHH------------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34555577888888888877 2333445556665554443 3555666777777777777766655
Q ss_pred cCC--HHHHHHHHHHhH---hhcCC--CCCchHHHHHHHHHHhcCChHHHHHHH
Q 036290 664 KGL--VDKGCLLFKSMD---SQYGM--QPSPDCYGCLVDMLSRNGYLEDAKHVI 710 (796)
Q Consensus 664 ~g~--~~~A~~~~~~~~---~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~ 710 (796)
... .+. ..+.+++. .++|- .-|+.....+...|.+.|++.+|...|
T Consensus 107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 442 111 11222221 12232 234677778888888888888887776
No 242
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.74 E-value=15 Score=33.06 Aligned_cols=142 Identities=12% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 036290 76 TNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVC 155 (796)
Q Consensus 76 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 155 (796)
.++..+-...+..+++.|..+....+.+.+..++...-...+.++.+.+..+ +...+.++.. .+|...-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3455555556666666666555555555555666666666666666666533 3333333332 24444445555555
Q ss_pred hccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCC
Q 036290 156 VSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCG 225 (796)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 225 (796)
++.++.+....+.+ +. -.++..+....+.++++.|+.+....+.+.+..++...-...+.++.+.+
T Consensus 106 ~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 106 GQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 55555433322222 11 24455555555555555555443333333333344333333344444443
No 243
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.68 E-value=15 Score=32.83 Aligned_cols=142 Identities=11% Similarity=0.056 Sum_probs=71.1
Q ss_pred CCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 036290 76 TNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVC 155 (796)
Q Consensus 76 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 155 (796)
.+|..+-...+.++++.|..+....+.+.+..++...-...+.++.+.|..+. ...+.++.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 34444555555555556654445555555556666555566666666665433 333333332 24555555556666
Q ss_pred hccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCC
Q 036290 156 VSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCG 225 (796)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 225 (796)
++.++.+....+...+ -.++..+....+.++++.|+.+....+.+.+..++...-...+.++.+.|
T Consensus 101 ~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 101 GQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 6665543333332221 24455566666666666655444444444444444333334444444444
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.44 E-value=8.8 Score=31.21 Aligned_cols=83 Identities=5% Similarity=-0.085 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH---HHHHHhccCCCC----ChhHHHHHHHHHHhcCChHHHHHH
Q 036290 566 QRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKG---ARMAFDQSFNSN----DVIVYNTLIMAYAHHGLVSEAMEI 638 (796)
Q Consensus 566 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 638 (796)
..+++-+......|. ++..+--.+..++.++....+ ++.++.+.+... .....-.|.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444444333 455555555566666655544 555554444432 122333455667777888888888
Q ss_pred HHHHHHCCCCCCH
Q 036290 639 FDKMKLANLQPSQ 651 (796)
Q Consensus 639 ~~~m~~~g~~p~~ 651 (796)
++.+.+ +.|+.
T Consensus 97 ~~~lL~--~eP~n 107 (126)
T 1nzn_A 97 VRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHH--HCTTC
T ss_pred HHHHHH--hCCCC
Confidence 887777 66743
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.09 E-value=45 Score=37.76 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=63.3
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036290 523 ALVHQGHNHEAVTIFHSLVEAGEKPDEYILGT--ILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI 600 (796)
Q Consensus 523 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 600 (796)
++...|+.+.+..+++.+.... .|....-.. +.-+|+..|+.....+++..+.... ..++.....+.-++...|+.
T Consensus 533 Gll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred HhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 4445677777777777766531 222222222 2235666777777766777666532 12333333333334445666
Q ss_pred HHHHHHHhccCCCCChhHHHHHHH--HHHhcCCh-HHHHHHHHHHHHCCCCCCHHHH
Q 036290 601 KGARMAFDQSFNSNDVIVYNTLIM--AYAHHGLV-SEAMEIFDKMKLANLQPSQATF 654 (796)
Q Consensus 601 ~~A~~~~~~~~~~~~~~~~~~li~--~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~ 654 (796)
+.+.+++.......|...-....- +....|.. .++..++..+.. .+|..+-
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 666666633333444444333332 33333332 566667777753 4555443
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.97 E-value=5.2 Score=33.54 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=76.6
Q ss_pred cCCCCChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHHH----HHHHHH---HHhccCCHHHHHHHHHH
Q 036290 610 SFNSNDVIVYNTLIMAYAHHGLV------SEAMEIFDKMKLANLQPSQAT----FVSVMS---ACSHKGLVDKGCLLFKS 676 (796)
Q Consensus 610 ~~~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t----~~~ll~---~~~~~g~~~~A~~~~~~ 676 (796)
++...|..+|-..+....+.|+. ++..++|++.... ++|+... |..+-- .+...++.++|.++|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45556888888888888888988 8888889888774 6665321 222211 12334789999999999
Q ss_pred hHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036290 677 MDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLS 727 (796)
Q Consensus 677 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 727 (796)
+.+. .-+- ...|.....--.++|+...|.+++.+. +..|. .....+.+.
T Consensus 86 a~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 86 ARAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 9754 2222 667777777778899999999999887 44443 233443333
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.94 E-value=31 Score=35.66 Aligned_cols=185 Identities=12% Similarity=0.141 Sum_probs=109.8
Q ss_pred CChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCchh--HHHHHHHHHHhcCC
Q 036290 528 GHNHEAVTIFHSLVEA-----GEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIK-LGFNTEVY--VASAVIDAYAKCGD 599 (796)
Q Consensus 528 ~~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~--~~~~li~~~~~~g~ 599 (796)
|+++.|++.+-.+.+. ...-.......++..|...++++...+.+..+.+ +|..+... ....++..+.....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 4556666655554332 2233455566677777777777777666665554 33322111 11222222222332
Q ss_pred HH--HHHHHHhccCCC---C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHh
Q 036290 600 IK--GARMAFDQSFNS---N-------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA--NLQPS---QATFVSVMSACS 662 (796)
Q Consensus 600 ~~--~A~~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~ 662 (796)
.+ .-..+. +.+.. + .......|...+...|++.+|..++.++... |..+. ...+..-++.|.
T Consensus 110 ~d~~~~~~~i-~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 110 LDLNTRISVI-ETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp THHHHHHHHH-HCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22 223333 22221 1 1223456788899999999999999998753 22221 134566678899
Q ss_pred ccCCHHHHHHHHHHhHhh-cCC--CCC--chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 663 HKGLVDKGCLLFKSMDSQ-YGM--QPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 663 ~~g~~~~A~~~~~~~~~~-~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
..+++..|..++.++... ... .|+ ...+...+..+...+++.+|.+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987532 112 222 356678888889999999998887766
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.72 E-value=3.1 Score=42.34 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCchHHH
Q 036290 619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS----QYGMQPSPDCYG 691 (796)
Q Consensus 619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~ 691 (796)
...++..+...|++++|...+..+.. ..| +...+..+|.++.+.|+..+|++.|+.+.+ +.|+.|++.+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34556677788888888888888876 556 777888888888888888888888887653 457888765543
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.70 E-value=3.7 Score=38.39 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=77.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCh
Q 036290 625 AYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYL 703 (796)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 703 (796)
...+.|+++++++....-.+ -.| |...-..+++-+|-.|++++|.+-++.+. .+.|+...-..+.+-+.++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHHHHH
Confidence 45667888888888877777 456 66777778888999999999999888887 4566633222222222221111
Q ss_pred HHHHHHHHhC--C-CCCCHHHH-HHHHHH--HHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 704 EDAKHVIEIM--P-FQPSPTVY-RSLLSG--CRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 704 ~~A~~~~~~~--~-~~p~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
.+ ++|..- + +.-.+.-| ..++.+ ....|+.++|..+-+.+++..|..+..
T Consensus 81 R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 81 RK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 11 222211 1 11122224 455555 346699999999999999988876653
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.65 E-value=20 Score=37.02 Aligned_cols=184 Identities=7% Similarity=0.019 Sum_probs=114.1
Q ss_pred CchHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C--ChhHHHHHH----HHHHhcC
Q 036290 563 GAYQRTKSIHPFVIKL-----GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N--DVIVYNTLI----MAYAHHG 630 (796)
Q Consensus 563 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~li----~~~~~~g 630 (796)
++++.|.+.+-.+.+. ...........++..+...|+++...+.+ ..+.. . .......++ .......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i-~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL-TLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH-HHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 5677777766655542 34456778888999999999999987777 33322 1 122222333 3333333
Q ss_pred ChHHH--HHHHHHHHH--CC-CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc-CCCCC---chHHHHHHHHHH
Q 036290 631 LVSEA--MEIFDKMKL--AN-LQP---SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY-GMQPS---PDCYGCLVDMLS 698 (796)
Q Consensus 631 ~~~~A--~~~~~~m~~--~g-~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~p~---~~~~~~l~~~~~ 698 (796)
..+.. ..+.+.... .| +.. .......|...+...|++.+|..++..+.... +..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 33321 122222111 11 111 11223556788889999999999999987542 22222 567778889999
Q ss_pred hcCChHHHHHHHHhC-----CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290 699 RNGYLEDAKHVIEIM-----PFQPSP----TVYRSLLSGCRIHGNKELGEWASEKLLL 747 (796)
Q Consensus 699 ~~g~~~~A~~~~~~~-----~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 747 (796)
..+++..|..++.+. ...+++ ..+...+..+...+++.+|-+.|..+++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999886 122222 2345556667778899888888887775
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.48 E-value=3.7 Score=35.19 Aligned_cols=120 Identities=8% Similarity=-0.069 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc
Q 036290 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN-LQPSQ-------ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP 687 (796)
Q Consensus 616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 687 (796)
...+..-++.+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|++..+....-+..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444555666666666666655543310 12221 234445566666677777777766654332222221
Q ss_pred h-HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290 688 D-CYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKL 745 (796)
Q Consensus 688 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 745 (796)
. ....+. -...... ......+...-..+..|+.+.|++++|+.+++.+
T Consensus 100 ~s~~~~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCcccccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 111010 0000000 0112223344455778889999999999998864
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.27 E-value=13 Score=41.15 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=25.5
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290 662 SHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP 714 (796)
Q Consensus 662 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (796)
...|+++.|+++-++.. ...|+ ..+|..|..+|.+.|+++.|+-.++.++
T Consensus 348 l~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 348 LNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34455555555555554 23444 4555555555555555555555555553
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.26 E-value=4.8 Score=34.50 Aligned_cols=136 Identities=10% Similarity=0.019 Sum_probs=73.9
Q ss_pred hCCCCchhHHHH--HHHHHHhcCCHHHHHHHHhccCCC----CCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290 578 LGFNTEVYVASA--VIDAYAKCGDIKGARMAFDQSFNS----NDV-------IVYNTLIMAYAHHGLVSEAMEIFDKMKL 644 (796)
Q Consensus 578 ~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 644 (796)
.|+.|....++. -++.+...|.++.|+-+.+-.+.. ++. .++..+.+++...|++.+|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 456665554443 367788899999998777332221 232 2566778899999999999999999754
Q ss_pred CC-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCC-CCHHH
Q 036290 645 AN-LQPSQA-TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQ-PSPTV 721 (796)
Q Consensus 645 ~g-~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~ 721 (796)
.. .-|... +...+- ....... .....++.+.-.-+..+|.+.|++++|+.+++..+.+ -++.+
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp HHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred HHHHHhcCCCcccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 21 222211 111110 0000000 0023334455556889999999999999999998543 34444
Q ss_pred HHHHHH
Q 036290 722 YRSLLS 727 (796)
Q Consensus 722 ~~~l~~ 727 (796)
--.|..
T Consensus 158 nm~Lak 163 (167)
T 3ffl_A 158 NMLLAN 163 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.95 E-value=32 Score=34.64 Aligned_cols=57 Identities=7% Similarity=-0.046 Sum_probs=24.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290 657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (796)
+...|...|++.+|.+++.++.+...-..| ...+..-+..|...|++.++...+.+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344444555555555555444433111111 233333444444555555555554443
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.87 E-value=32 Score=33.23 Aligned_cols=113 Identities=7% Similarity=0.113 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHh
Q 036290 587 ASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAME----IFDKMKLANLQPSQATFVSVMSACS 662 (796)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~~~~ 662 (796)
|.++..=|.+.+++++|.+++ ..-...+.+.|+...|-. +.+...+.+++++......++..+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL------------~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELI------------SQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHH------------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566678888899998887 233445566777666555 3555566778888877777776665
Q ss_pred ccCCHH-HHHHHHHHhH---hhcCC--CCCchHHHHHHHHHHhcCChHHHHHHHH
Q 036290 663 HKGLVD-KGCLLFKSMD---SQYGM--QPSPDCYGCLVDMLSRNGYLEDAKHVIE 711 (796)
Q Consensus 663 ~~g~~~-~A~~~~~~~~---~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 711 (796)
....-+ .=.++++++. .+.|- .-++.....+...|.+.|++.+|...|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 422111 0112222222 12122 2357788889999999999999988764
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.32 E-value=5 Score=30.83 Aligned_cols=63 Identities=8% Similarity=-0.012 Sum_probs=45.9
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHH
Q 036290 125 EFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLN 188 (796)
Q Consensus 125 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 188 (796)
+..+..+-++.+-...+.|++....+.|++|.+.+|+..|..+++-+...- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344667777788878888898888999999988888888888888776432 222445655544
No 257
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.97 E-value=20 Score=29.44 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290 686 SPDCYGCLVDMLSRNGYLEDAKHVIEI-M-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLL 748 (796)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 748 (796)
+......-++.+..+|+.+.-.+++.. . ..+|++...-.+..+|.+-|+..+|.+++.++=+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344555666777788888888888888 4 45677888888888899999999998888887654
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.57 E-value=11 Score=29.01 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290 631 LVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD 695 (796)
Q Consensus 631 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 695 (796)
+.-+..+-++.+....+-|+.....+.+++|.+.+++..|..+|+.++.+ +.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 34456666777777778899999999999999999999999999988755 3444556766654
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.47 E-value=11 Score=41.61 Aligned_cols=125 Identities=13% Similarity=0.064 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccC-CHHHHHHHHHHhHhh-----cCCCCCc---
Q 036290 620 NTLIMAYAHHGL-VSEAMEIFDKMKLANLQPSQATF--VSVMSACSHKG-LVDKGCLLFKSMDSQ-----YGMQPSP--- 687 (796)
Q Consensus 620 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g-~~~~A~~~~~~~~~~-----~~~~p~~--- 687 (796)
..++..+...++ .+.|..+++++.+ ..|...++ ..++..+...+ +--+|.+++.+..+. ....+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~--~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTK--KDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHh--hCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555555 5778888888887 34543332 22333333332 222344444443321 0222221
Q ss_pred --------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 688 --------DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLL 746 (796)
Q Consensus 688 --------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 746 (796)
..+..=++-+...|+++-|+++-++. ...| +..+|..|..+|...||++.|+-.+..+-
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222234456789999999999988 4556 57899999999999999999999998873
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.17 E-value=18 Score=34.36 Aligned_cols=19 Identities=0% Similarity=-0.246 Sum_probs=8.6
Q ss_pred HHHHHccCChhHHHHHhcc
Q 036290 86 IAMYSKCGYFGWGLRVFDE 104 (796)
Q Consensus 86 i~~~~~~g~~~~A~~~~~~ 104 (796)
+...++.|+.+-+..+++.
T Consensus 43 L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3333444555544444443
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.71 E-value=12 Score=30.56 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036290 647 LQPSQATFVSVMSACSHKG---LVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPT 720 (796)
Q Consensus 647 ~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 720 (796)
-.|+..|--.+.+++.+.. +..+++.++++..+. + |. ..++-.|.-++.+.|++++|.+..+.+ ...|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 4566666555666666655 456788899888855 3 53 677778889999999999999999988 7777653
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.30 E-value=31 Score=40.82 Aligned_cols=164 Identities=9% Similarity=0.020 Sum_probs=88.4
Q ss_pred HhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCch
Q 036290 486 CSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAY 565 (796)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 565 (796)
...++..+...+..+-+.++..-... +...--.+..++...|++++|.+.|++.. .|+..+.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhh
Confidence 34566667777777777776555543 33333445567778888888888887642 1221111000 000
Q ss_pred HHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCC----hhHHHHHHHHHHhcCChHHHH
Q 036290 566 QRTKSIHPFVIKL-G-FNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN---SND----VIVYNTLIMAYAHHGLVSEAM 636 (796)
Q Consensus 566 ~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~ 636 (796)
.. +..+... . ...-..-|..++..+.+.+.++.+.++-..++. ..+ ...|..+.+++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 0111110 0 111223455666666677776666655533322 111 125777778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 036290 637 EIFDKMKLANLQPSQATFVSVMSACSHKGLV 667 (796)
Q Consensus 637 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 667 (796)
..+-.+..... -...+..|+..++..|..
T Consensus 959 ~aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 959 VALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 87777766332 344556666655555543
No 263
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=77.22 E-value=45 Score=34.17 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCCCch--hhHHHHHHHHccCChhHHHHHhcccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 036290 66 VHGHIVKLGFTNDIF--LQNNLIAMYSKCGYFGWGLRVFDEMAER---NLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNG 140 (796)
Q Consensus 66 ~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 140 (796)
+...+.+.|..++.. .....+...++.|..+-+..+++.-... +..-++. +...++.|+.+-+.-++ +.|
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~g 103 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTNMVKLLL----ENN 103 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHHHHHHHH----HHT
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHH----hCC
Confidence 444455556655432 1223444556677777777766643222 2222333 33334556654433333 334
Q ss_pred CCCCccc--HHHHHHHHhccCChhHHHHHHHHHHHhcCCCCh--hHhhHHHHHHHccCChhHHHHHhhccC
Q 036290 141 FMPNEFA--VGSVMKVCVSMGASEFGYSIHCFALKIRIEKNP--FVGCSVLNFYAKLGDVAAAERVFYSIS 207 (796)
Q Consensus 141 ~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 207 (796)
..|+... -.+.+...+..|+.+.+..++ +.+...+. ......+...++.|+.+-+..+++.-.
T Consensus 104 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 170 (437)
T 1n11_A 104 ANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 4443221 112233334455555444433 33332211 111223344455666666666665433
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.94 E-value=23 Score=29.37 Aligned_cols=71 Identities=8% Similarity=0.038 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290 648 QPSQATFVSVMSACSHKG---LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP 719 (796)
Q Consensus 648 ~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 719 (796)
.|+..+--.+.+++.+.. +..+++.+++...+. +-.-...+.-.|.-++.+.|++++|.++.+.+ ...|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 466666555666776655 456788888888754 21113666677888899999999999999887 667765
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.44 E-value=13 Score=28.40 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=60.3
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHH
Q 036290 158 MGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSM 237 (796)
Q Consensus 158 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 237 (796)
....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|...++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456777777777766654 33333333456678899999999999999999999987765 4677777777777777
Q ss_pred HHCCCCCCHhhH
Q 036290 238 LFEGITMDKYTF 249 (796)
Q Consensus 238 ~~~g~~p~~~~~ 249 (796)
..+|- |....|
T Consensus 95 a~sg~-p~~q~F 105 (115)
T 2uwj_G 95 GGSSD-PALADF 105 (115)
T ss_dssp HTCSS-HHHHHH
T ss_pred HhCCC-HHHHHH
Confidence 66653 444444
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.39 E-value=32 Score=32.49 Aligned_cols=244 Identities=14% Similarity=0.080 Sum_probs=121.5
Q ss_pred HHHHHHHHccCChhHHHHHhcccCCCCcc----hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc---cHHHHHHHH
Q 036290 83 NNLIAMYSKCGYFGWGLRVFDEMAERNLV----SWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEF---AVGSVMKVC 155 (796)
Q Consensus 83 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~ 155 (796)
+..+...++.|+.+.+..+++.-..++.. -++ .+...++.|+.+- ++.+.+.|..|+.. ..+ .+...
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSREDI----VELLLRHGADPVLRKKNGAT-PFLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCC-HHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCC-HHHHH
Confidence 34455556677777777777654333221 123 3444456666543 44444556555432 222 33334
Q ss_pred hccCChhHHHHHHHHHHHhcCCCChh--HhhHHHHHHHccCChhHHHHHhhccCCCCce-------------eHHHHHHH
Q 036290 156 VSMGASEFGYSIHCFALKIRIEKNPF--VGCSVLNFYAKLGDVAAAERVFYSISSDDVG-------------CWNAMIGG 220 (796)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~ 220 (796)
+..|+.+ +.+.+.+.|..++.. .....+...+..|+.+-...+++.-..++.. -++ .+..
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~ 154 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMD 154 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHH
T ss_pred HHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHH
Confidence 4556654 444445566555432 1223445566778888887777765443221 122 3344
Q ss_pred HHhCCCchHHHHHHHHHHHC-CCCCCH---hhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChH--HHHHHHHhhhcC
Q 036290 221 YAHCGYGFEALNVVSSMLFE-GITMDK---YTFINALQGCSLVADFDIGRQIHGLIIRSEVECSIS--IVNALIDMYIKS 294 (796)
Q Consensus 221 ~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~ 294 (796)
.+..|+.+-+ +.+.+. |..++. ...+.+ ...+..++.....++.+.+.+.|..++.. ...+.+...++.
T Consensus 155 A~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 155 AAEKGHVEVL----KILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHTCHHHH----HHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHHHH----HHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 4555665433 333333 443332 222223 33334555555667777777777655432 122334555677
Q ss_pred CCHHHHHHHHhhcC-C---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCc
Q 036290 295 SGMDYAFKVFERMA-D---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNH 347 (796)
Q Consensus 295 g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~ 347 (796)
|..+-+..+++... . +|..-.+.+- ..++.|+. ++.+.+.+.|..|+.
T Consensus 230 ~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~-~A~~~~~~----~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 230 KHLGLVQRLLEQEHIEINDTDSDGKTALL-LAVELKLK----KIAELLCKRGASTDC 281 (285)
T ss_dssp TCHHHHHHHHHSSSCCTTCCCTTSCCHHH-HHHHTTCH----HHHHHHHHHSSCSCC
T ss_pred CCHHHHHHHHhccCCCccccCCCCCcHHH-HHHHcCcH----HHHHHHHHcCCCCCc
Confidence 88888888877322 2 2222223322 23344443 344445555655543
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.79 E-value=1.1e+02 Score=34.62 Aligned_cols=217 Identities=11% Similarity=-0.003 Sum_probs=98.6
Q ss_pred HHHhcCCcchHHHHHhcCCC----CCHh--hHHHHHHHHHHcCChhHHHHHHHHHHHcCC--C-----CCHHHHHHHHHH
Q 036290 492 SYVNFGQLDNSFEFSNGAER----LDMA--SWGAMMSALVHQGHNHEAVTIFHSLVEAGE--K-----PDEYILGTILNS 558 (796)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~-----p~~~t~~~ll~~ 558 (796)
+....|+.+++..+++.... .+.. .=..+.-+....|..+++..++.......- . +....-.++--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45566777778877776553 1222 222333455566666677777766544321 0 111111112112
Q ss_pred HhccCc-hHHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHH--HHHhcCChH
Q 036290 559 CAAIGA-YQRTKSIHPFVIKLGFNTEVYVAS--AVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIM--AYAHHGLVS 633 (796)
Q Consensus 559 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~ 633 (796)
....|. -+.+.+.+..+....-. ...... ++...+.-.|+.+....++.-.....+......+.. ++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 222222 12334444433332111 111111 223334455666666666533333323333333333 344667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 036290 634 EAMEIFDKMKLANLQPSQATFV---SVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVI 710 (796)
Q Consensus 634 ~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 710 (796)
.+..+.+.+... .....-|. .+.-+|+-.|+.....+++..+... ...+..-...+.-++...|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 777777777652 21122232 2234566777776666677776632 1122222233333344455555555555
Q ss_pred HhC
Q 036290 711 EIM 713 (796)
Q Consensus 711 ~~~ 713 (796)
+.+
T Consensus 618 ~~L 620 (963)
T 4ady_A 618 QLL 620 (963)
T ss_dssp TTG
T ss_pred HHH
Confidence 444
No 268
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.71 E-value=5.4 Score=40.55 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHH
Q 036290 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSPTVYR 723 (796)
Q Consensus 654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~ 723 (796)
...++.++...|+++++...++.+... .| +...+..++.+|.+.|+..+|.+.|+++ ++.|.+.+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445667788899999999999998844 45 4778999999999999999999998775 7899886543
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.32 E-value=20 Score=29.31 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290 633 SEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD 695 (796)
Q Consensus 633 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 695 (796)
-+..+-++.+....+-|+.......+++|.+.+++..|..+|+-++.+ +.+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 345566777777778899999999999999999999999999988755 4455666776654
No 270
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=73.72 E-value=83 Score=32.09 Aligned_cols=148 Identities=16% Similarity=0.082 Sum_probs=77.1
Q ss_pred HHHHHHHccCChhHHHHHhcccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHhcc
Q 036290 84 NLIAMYSKCGYFGWGLRVFDEMAERNL---VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFA--VGSVMKVCVSM 158 (796)
Q Consensus 84 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~ 158 (796)
..+..-+..|+.+-+..+++.-..++. ...+ .+...++.|+.+-+..+++ .|..++... -.+.|...+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHC
Confidence 344555678888888888876444332 2233 3444466777665555554 344443221 12334444556
Q ss_pred CChhHHHHHHHHHHHhcCCCChh--HhhHHHHHHHccCChhHHHHHhhccCCCC---ceeHHHHHHHHHhCCCchHHHHH
Q 036290 159 GASEFGYSIHCFALKIRIEKNPF--VGCSVLNFYAKLGDVAAAERVFYSISSDD---VGCWNAMIGGYAHCGYGFEALNV 233 (796)
Q Consensus 159 ~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 233 (796)
|+.+. .+.+.+.|..++.. .....+...++.|+.+.+..+++.-...+ ..-++ .+...++.|+.+ +
T Consensus 91 g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~ 161 (437)
T 1n11_A 91 GHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVR----V 161 (437)
T ss_dssp TCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----H
T ss_pred CCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHH----H
Confidence 66654 44445556554432 22334455667788888888877543322 11222 333345556643 4
Q ss_pred HHHHHHCCCCCC
Q 036290 234 VSSMLFEGITMD 245 (796)
Q Consensus 234 ~~~m~~~g~~p~ 245 (796)
++.+.+.|..|+
T Consensus 162 v~~Ll~~g~~~~ 173 (437)
T 1n11_A 162 AELLLERDAHPN 173 (437)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHhCCCCCC
Confidence 444455555443
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.72 E-value=38 Score=30.93 Aligned_cols=147 Identities=9% Similarity=-0.038 Sum_probs=68.7
Q ss_pred hhhccCChhhHHHHHHHHHHhCCCCCch--hhHHHHHHHHccCChhHHHHHhcccCCCCc---chHHHHHHHHHhcCCch
Q 036290 53 LSENLKSRVLGTQVHGHIVKLGFTNDIF--LQNNLIAMYSKCGYFGWGLRVFDEMAERNL---VSWTLIVSAAIQNGEFD 127 (796)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~ 127 (796)
..+..|+.+....+.+.+.+.|..++.. .....+...+..|+.+-+..+++.-..++. .-++. +...++.|+.+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~ 93 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRSPT 93 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCCHH
Confidence 3444566666666666666666555432 122344555567777777666664333222 22333 33334566666
Q ss_pred HHHHHHHHHHHCCCCCCc---ccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChh---HhhHHHHHHHccCChhHHHH
Q 036290 128 MGLKMYVDMKTNGFMPNE---FAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPF---VGCSVLNFYAKLGDVAAAER 201 (796)
Q Consensus 128 ~a~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~ 201 (796)
-+..+++.....++.++. ...+.+ ...+..|+. ++.+.+.+.|..++.. .....+...++.|+.+-+..
T Consensus 94 ~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 168 (241)
T 1k1a_A 94 CLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168 (241)
T ss_dssp HHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHH
Confidence 555555543322222221 122222 222333443 3344444455444322 12333444455566665555
Q ss_pred Hhhc
Q 036290 202 VFYS 205 (796)
Q Consensus 202 ~~~~ 205 (796)
+++.
T Consensus 169 Ll~~ 172 (241)
T 1k1a_A 169 LLQH 172 (241)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 5554
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.41 E-value=32 Score=26.33 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 036290 363 LDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWES 442 (796)
Q Consensus 363 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 442 (796)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-.. +.|..+++...+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4455555555554443 222333334567789999999999999999999999887554 678888888888787766
Q ss_pred CCcccHHHH
Q 036290 443 GVEVNGCTF 451 (796)
Q Consensus 443 g~~p~~~t~ 451 (796)
| .|....|
T Consensus 99 g-~p~~q~F 106 (116)
T 2p58_C 99 Q-DPRIQTF 106 (116)
T ss_dssp C-CHHHHHH
T ss_pred C-CHHHHHH
Confidence 5 3444444
No 273
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=68.79 E-value=79 Score=29.79 Aligned_cols=49 Identities=6% Similarity=-0.135 Sum_probs=23.6
Q ss_pred CCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCC
Q 036290 77 NDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGE 125 (796)
Q Consensus 77 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 125 (796)
++..+-..-+.++++.|..+....+.+.+..++.......+.++.+.|.
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 4444444455555555543333333333444555444455555555553
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.98 E-value=37 Score=27.73 Aligned_cols=60 Identities=10% Similarity=0.064 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290 431 DVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK 491 (796)
Q Consensus 431 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (796)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455666777777899999999999999999999999999998887654 233445655554
No 275
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=66.94 E-value=40 Score=32.15 Aligned_cols=170 Identities=7% Similarity=-0.022 Sum_probs=76.1
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCC
Q 036290 66 VHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAER---NLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFM 142 (796)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 142 (796)
+...+.+.|..++..-....+...++.|+.+-+..+++.-..+ +..-++.+.. .+..|+.+-+.-+++ .|..
T Consensus 46 ~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~----~ga~ 120 (285)
T 3kea_A 46 LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY-AVDSGNMQTVKLFVK----KNWR 120 (285)
T ss_dssp HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHH----HCGG
T ss_pred HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH-HHHcCCHHHHHHHHh----cCCC
Confidence 4444555565554433344455556667777776666643332 2222333333 345555544433333 3444
Q ss_pred CCccc---HHHHHHHHhccCChhHHHHHHHHHHHhcCCC-ChhHhhHHHHHHHccCChhHHHHHhhccC---CCCceeHH
Q 036290 143 PNEFA---VGSVMKVCVSMGASEFGYSIHCFALKIRIEK-NPFVGCSVLNFYAKLGDVAAAERVFYSIS---SDDVGCWN 215 (796)
Q Consensus 143 p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 215 (796)
++... +.+.+...+..|+.+.+ +.+.+.|..+ +.......+...+..|..+-+.-+++.-. ..|..-++
T Consensus 121 ~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t 196 (285)
T 3kea_A 121 LMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI 196 (285)
T ss_dssp GGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCC
T ss_pred CCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCC
Confidence 44322 12344444455554433 3334444333 11123344445556666666666654321 12222233
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhh
Q 036290 216 AMIGGYAHCGYGFEALNVVSSMLFEGITMDKYT 248 (796)
Q Consensus 216 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 248 (796)
..+...++.|+ .++.+.+.+.|..|+...
T Consensus 197 ~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 197 PDIKLAIDNKD----IEMLQALFKYDINIYSAN 225 (285)
T ss_dssp TTHHHHHHHTC----HHHHHHHTTSCBCSTTTT
T ss_pred hHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Confidence 32232333344 344455555566555543
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.99 E-value=42 Score=31.40 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=72.6
Q ss_pred HHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCC
Q 036290 593 AYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA----TFVSVMSACSHKGL 666 (796)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~ 666 (796)
.+.+.|++++|++.....++. | |...-..++..+|-.|++++|.+-++...+ +.|+.. +|..+|++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH------
Confidence 456778888888888666665 4 788888899999999999999999998888 566543 34444443
Q ss_pred HHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHHH--hcCChHHHHHHHHhC
Q 036290 667 VDKGCLLFKSMDSQYGMQPS-----PDCYGCLVDMLS--RNGYLEDAKHVIEIM 713 (796)
Q Consensus 667 ~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~--~~g~~~~A~~~~~~~ 713 (796)
+..-+++. ..+-.|. ......++.++. ..|+.++|.++-.++
T Consensus 78 ----E~~R~~vf-aG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 78 ----AQARKDFA-QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp ----HHHHHHHT-TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----HHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 22222222 2133332 334445666554 469999999887766
No 277
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.99 E-value=48 Score=39.21 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-------------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290 589 AVIDAYAKCGDIKGARMAFDQSFNS-------------------------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMK 643 (796)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 643 (796)
.+..+|...|++++|.+.|.+.... .-..-|..++..|.+.|.++.+.++-+...
T Consensus 847 l~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi 926 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 926 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566667777777666433211 112346778888999999999998887776
Q ss_pred HCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHH------------H
Q 036290 644 LANLQPSQ----ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDA------------K 707 (796)
Q Consensus 644 ~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A------------~ 707 (796)
+..-.-+. ..|..+.+++...|++++|...+-.+... .--..++..|+..++..|..+.- .
T Consensus 927 ~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd 1003 (1139)
T 4fhn_B 927 ASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVD 1003 (1139)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHH
T ss_pred HhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHH
Confidence 64221121 24778889999999999999998777632 23367788888888776655433 3
Q ss_pred HHHHhC-C-C-CC-CHHHHHHHHHHH-HhcCC-hHHHHHHHHHHHcc
Q 036290 708 HVIEIM-P-F-QP-SPTVYRSLLSGC-RIHGN-KELGEWASEKLLLL 748 (796)
Q Consensus 708 ~~~~~~-~-~-~p-~~~~~~~l~~~~-~~~g~-~~~A~~~~~~~~~~ 748 (796)
+++..- . . .+ +..-|..++.++ ..+|| ...|.-+|+.+.++
T Consensus 1004 ~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1004 NLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 333211 0 0 11 112355555553 44454 45677788888765
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.67 E-value=65 Score=30.59 Aligned_cols=19 Identities=0% Similarity=-0.232 Sum_probs=11.1
Q ss_pred HHHHHccCChhHHHHHhcc
Q 036290 86 IAMYSKCGYFGWGLRVFDE 104 (796)
Q Consensus 86 i~~~~~~g~~~~A~~~~~~ 104 (796)
+...++.|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3344556777666666654
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.59 E-value=34 Score=35.15 Aligned_cols=95 Identities=12% Similarity=-0.015 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHH--
Q 036290 586 VASAVIDAYAKCGDIKGARMAFDQSFNS-----NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKL---ANLQPSQATFV-- 655 (796)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~-- 655 (796)
....+.+.|.+.|++++|.+.+.+.... .-+..+-..++.+...+++..+...+++... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4456677777777777777777433221 2334566666777777777777777766543 22222221110
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhh
Q 036290 656 SVMSACSHKGLVDKGCLLFKSMDSQ 680 (796)
Q Consensus 656 ~ll~~~~~~g~~~~A~~~~~~~~~~ 680 (796)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234566777777766665544
No 280
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=63.50 E-value=15 Score=34.37 Aligned_cols=89 Identities=12% Similarity=-0.042 Sum_probs=46.4
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCcc-------cHHHHHHHHh--ccCChhHHHHHHHHHHHhc---------CCCChh
Q 036290 120 AIQNGEFDMGLKMYVDMKTNGFMPNEF-------AVGSVMKVCV--SMGASEFGYSIHCFALKIR---------IEKNPF 181 (796)
Q Consensus 120 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~~ 181 (796)
.++.|+.+....+++.+...|..++.. ..+.|..++. +.|+.+.+..+++.-...+ +.....
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 356677777777777666666555532 2334444432 5566666666665543311 111001
Q ss_pred HhhHHHHHHHccCChhHHHHHhhccCC
Q 036290 182 VGCSVLNFYAKLGDVAAAERVFYSISS 208 (796)
Q Consensus 182 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 208 (796)
...+.+...+..|+.+-+..+++.-..
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 222334445566777777777665433
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.83 E-value=52 Score=29.85 Aligned_cols=43 Identities=9% Similarity=-0.049 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCCch--hhHHHHHHHHccCChhHHHHHhcccCC
Q 036290 65 QVHGHIVKLGFTNDIF--LQNNLIAMYSKCGYFGWGLRVFDEMAE 107 (796)
Q Consensus 65 ~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~ 107 (796)
++...+.+.|..++.. .....+...++.|+.+-+..+++.-..
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 67 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence 3444455566544331 223355566677777777777765443
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.27 E-value=93 Score=27.64 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=8.7
Q ss_pred ccCCCCChhHHHHHHHHHHhcC
Q 036290 609 QSFNSNDVIVYNTLIMAYAHHG 630 (796)
Q Consensus 609 ~~~~~~~~~~~~~li~~~~~~g 630 (796)
+.+..++...-...+.++...+
T Consensus 150 ~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 150 KALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHHHHhC
Confidence 3333344433333444444433
No 283
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=58.84 E-value=48 Score=32.89 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=76.9
Q ss_pred ChhhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCch--hhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHH
Q 036290 43 DPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIF--LQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAA 120 (796)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 120 (796)
|..-...|..+ +..|+.+ +...+++.|..++.. .....+...++.|..+-+..+++.-...+...-.+.+...
T Consensus 17 d~~g~t~L~~A-a~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 17 DDENMEKIHVA-ARKGQTD----EVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp CHHHHHHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHH
T ss_pred CCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHH
Confidence 33344444433 3445543 445555667655542 1233445556678888777777765444332222233344
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCc--------------------ccHHHHHHHHhccC--ChhHHHHHHHHHHHhcCCC
Q 036290 121 IQNGEFDMGLKMYVDMKTNGFMPNE--------------------FAVGSVMKVCVSMG--ASEFGYSIHCFALKIRIEK 178 (796)
Q Consensus 121 ~~~~~~~~a~~~~~~m~~~~~~p~~--------------------~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~ 178 (796)
+..|+.+-+..+++.-...|..|+. ...+.|..+ +..| +.+ +.+.+++.|..+
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~~----~v~~Ll~~ga~~ 166 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC-VGLGPEYLE----MIKILVQLGASP 166 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH-HHSCGGGHH----HHHHHHHHTCCT
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH-HHcCCchHH----HHHHHHHcCCCC
Confidence 5677777777777765444444332 122333333 3344 443 334444456554
Q ss_pred ChhH--hhHHHHHHHccCChhHHHHHhhc
Q 036290 179 NPFV--GCSVLNFYAKLGDVAAAERVFYS 205 (796)
Q Consensus 179 ~~~~--~~~li~~~~~~g~~~~A~~~~~~ 205 (796)
+... ....+...+..|+.+-+..+++.
T Consensus 167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 167 TAKDKADETPLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 4321 22334445566777777777764
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.56 E-value=81 Score=31.16 Aligned_cols=62 Identities=10% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHhhcCCCC---cchHHHHHHHHHhCCC--ccHHHHHHHHHHHcCCCCC
Q 036290 285 NALIDMYIKSSGMDYAFKVFERMADKD---VISWNTLFGGFSENKN--PGQTASLFHKFILSGSRPN 346 (796)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~l~~~m~~~g~~p~ 346 (796)
+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+...+++..+...|+-+.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 667788888899999999999998763 2233344444443322 3456677777776665443
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=57.21 E-value=54 Score=28.85 Aligned_cols=148 Identities=11% Similarity=0.007 Sum_probs=65.5
Q ss_pred HHccCChhHHHHHhcccC-C---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCccc---HHHHHHHHhccCCh
Q 036290 89 YSKCGYFGWGLRVFDEMA-E---RNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFA---VGSVMKVCVSMGAS 161 (796)
Q Consensus 89 ~~~~g~~~~A~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~~~~ 161 (796)
.+..|+.+....+++.-. . ++..-++.|..+ ++.|+.+ +++.+.+.|..++... .+. +...+..|+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~ 85 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSP-YLYAGAQGRT 85 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCH
Confidence 345667777777666443 2 222223333333 4455543 3334444555544332 222 2233344555
Q ss_pred hHHHHHHHHHHHhcCCCChh--HhhHHHHHHHccCChhHHHHHhhcc-CC---CCceeHHHHHHHHHhCCCchHHHHHHH
Q 036290 162 EFGYSIHCFALKIRIEKNPF--VGCSVLNFYAKLGDVAAAERVFYSI-SS---DDVGCWNAMIGGYAHCGYGFEALNVVS 235 (796)
Q Consensus 162 ~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 235 (796)
+.+..+++. .+..++.. .....+...++.|+.+-+..+++.- .. +|..-++.+..+.........-.++++
T Consensus 86 ~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 86 EILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 444333322 22222111 1112234445567777666666654 22 233334444444333322333456666
Q ss_pred HHHHCCCCCC
Q 036290 236 SMLFEGITMD 245 (796)
Q Consensus 236 ~m~~~g~~p~ 245 (796)
.+.+.|..++
T Consensus 163 ~Ll~~ga~~~ 172 (201)
T 3hra_A 163 LLMENGADQS 172 (201)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 6666665554
No 286
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=56.96 E-value=93 Score=30.27 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=39.0
Q ss_pred HhhhcCCCHHHHHHHHhhcC----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChH
Q 036290 289 DMYIKSSGMDYAFKVFERMA----DKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLD 364 (796)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 364 (796)
...+..|..+.+..+++.-. .+|..-++.|..+ ++.|+. ++.+.+.+.|..++..+ .+...++.|+.+
T Consensus 244 ~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~ 315 (337)
T 4g8k_A 244 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAELLCKRGASTDCGD---LVMTARRNYDHS 315 (337)
T ss_dssp HHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHHHHTTSCSSTTCC---HHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHHHHHCCCCCCCCC---HHHHHHHcCCHH
Confidence 34455666666666655321 1232233344333 345553 34455566677776654 233334445443
Q ss_pred HHHHHHHHHHHhCCCCc
Q 036290 365 LGLQLQCLALHCGFLDE 381 (796)
Q Consensus 365 ~a~~~~~~~~~~g~~~~ 381 (796)
+.+.+.+.|-.||
T Consensus 316 ----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 316 ----LVKVLLSHGAKED 328 (337)
T ss_dssp ----HHHHHHHTTCCC-
T ss_pred ----HHHHHHHCcCCCC
Confidence 3444555665554
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.35 E-value=25 Score=32.83 Aligned_cols=56 Identities=7% Similarity=-0.143 Sum_probs=32.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhh-------HHHHHHhhc--cCCCchHHHHHHHHHH
Q 036290 218 IGGYAHCGYGFEALNVVSSMLFEGITMDKYT-------FINALQGCS--LVADFDIGRQIHGLII 273 (796)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 273 (796)
+...++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+.++.+++...
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3444566777777777777766665555332 233333331 5677776666666543
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.26 E-value=61 Score=32.03 Aligned_cols=68 Identities=9% Similarity=0.048 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC---hhhHHHHHHHHHhcCC--chHHHHHHHHHHhcCCcccHHHHHH
Q 036290 386 SSLIYMFCRCGAVEMAHSVFDNVSYKN---ITTWNELLSGYCFNCC--DADVLKTFCNIWESGVEVNGCTFFY 453 (796)
Q Consensus 386 ~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ 453 (796)
+.++.=|...|+.++|...++++..|. ......+..++-+.++ .+...+++..+...|+-+.......
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 567888888999999999999988763 2344455555554433 4567788888887776655544433
No 289
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=54.15 E-value=2.4e+02 Score=30.57 Aligned_cols=36 Identities=6% Similarity=-0.006 Sum_probs=20.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHh
Q 036290 419 LLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETC 458 (796)
Q Consensus 419 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 458 (796)
....+.-.|+++.|++.+-.. ...+.+.+...+.-+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~ 335 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL 335 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc
Confidence 344555677777777766543 344555555544443
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.03 E-value=64 Score=29.34 Aligned_cols=83 Identities=7% Similarity=0.068 Sum_probs=36.8
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHhccCChhHHHHHHHHHHHhcCCCChh--HhhHHHHHHHccCC
Q 036290 120 AIQNGEFDMGLKMYVDMKTNGFMPNEFA--VGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPF--VGCSVLNFYAKLGD 195 (796)
Q Consensus 120 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 195 (796)
.++.|+.+.+..+++.+.+.|..++... -.+.|...+..|+.+ +.+.+.+.|..++.. .....+...+..|+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3455666555555555555554443321 112223333344443 333334445433321 11223344455666
Q ss_pred hhHHHHHhhcc
Q 036290 196 VAAAERVFYSI 206 (796)
Q Consensus 196 ~~~A~~~~~~~ 206 (796)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 66666666554
No 291
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=48.92 E-value=1.4e+02 Score=26.18 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=19.7
Q ss_pred hhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 036290 484 YICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGH 529 (796)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 529 (796)
.+....+..+...+..+....+.+.+..++...-...+.++.+.+.
T Consensus 29 ~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 29 YVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3333334444444443333344444444444444444444444443
No 292
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=48.69 E-value=44 Score=33.16 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=7.0
Q ss_pred HhcCChHHHHHHHHh
Q 036290 393 CRCGAVEMAHSVFDN 407 (796)
Q Consensus 393 ~~~g~~~~A~~~~~~ 407 (796)
+..|+.+-+.-+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 344555544444443
No 293
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=48.69 E-value=1.3e+02 Score=27.06 Aligned_cols=56 Identities=11% Similarity=-0.139 Sum_probs=27.2
Q ss_pred HHHHHccCChhHHHHHhhccCCCC---ceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 036290 187 LNFYAKLGDVAAAERVFYSISSDD---VGCWNAMIGGYAHCGYGFEALNVVSSMLFEGIT 243 (796)
Q Consensus 187 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 243 (796)
+...+..|+.+-+..+++.-..++ ..-+ +-+...+..|+.+-+..+++.+.+.|..
T Consensus 125 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 344445566665555555432221 1112 2333445556666665666666665543
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.08 E-value=49 Score=26.99 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=44.0
Q ss_pred hHHHHHHHHccCChhHHHHHhcccCCCCc---chHHHHHHHHHhcCC--chHHHHHHHHHHHCCCCCCc
Q 036290 82 QNNLIAMYSKCGYFGWGLRVFDEMAERNL---VSWTLIVSAAIQNGE--FDMGLKMYVDMKTNGFMPNE 145 (796)
Q Consensus 82 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 145 (796)
-+.++.-|...|+.++|.+.++++..|.. ....++..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35678888888999999999998876633 234455555555532 35577888888877754433
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.17 E-value=55 Score=28.76 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=9.6
Q ss_pred HHccCChhHHHHHhhcc
Q 036290 190 YAKLGDVAAAERVFYSI 206 (796)
Q Consensus 190 ~~~~g~~~~A~~~~~~~ 206 (796)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34456666666666543
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=46.88 E-value=1.1e+02 Score=27.59 Aligned_cols=193 Identities=14% Similarity=-0.024 Sum_probs=87.8
Q ss_pred HHHHHHHHhCCCCCch--hhHHHHHHHHccCChhHHHHHhcccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 036290 65 QVHGHIVKLGFTNDIF--LQNNLIAMYSKCGYFGWGLRVFDEMAER---NLVSWTLIVSAAIQNGEFDMGLKMYVDMKTN 139 (796)
Q Consensus 65 ~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 139 (796)
++...+.+.|..++.. .....+...++.|+.+-+..+++.-..+ +...++.+. ..+..|+.+- ++.+.+.
T Consensus 25 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~----~~~Ll~~ 99 (237)
T 3b7b_A 25 DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH-LAAKKGHYEV----VQYLLSN 99 (237)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH-HHHHTTCHHH----HHHHHTT
T ss_pred HHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcCCHHH----HHHHHhC
Confidence 3555566667655442 1223445556678888877777653322 222233333 3345566443 3344444
Q ss_pred C-CCCC---cccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChh--HhhHHHHHHHccCChhHHHHHhhccCCCCce-
Q 036290 140 G-FMPN---EFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPF--VGCSVLNFYAKLGDVAAAERVFYSISSDDVG- 212 (796)
Q Consensus 140 ~-~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 212 (796)
| ..++ ....+.+ ...+..|+.+ +.+.+.+.|..++.. .....+...++.|..+-+..+++.-..++..
T Consensus 100 ~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 174 (237)
T 3b7b_A 100 GQMDVNCQDDGGWTPM-IWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174 (237)
T ss_dssp TCCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC
T ss_pred CCCCcccCCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC
Confidence 4 2222 2222233 3333445544 444455566554332 1223344455667777776666654333221
Q ss_pred --eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhh--HHHHHHhhccCCCchHHHHHHHHH
Q 036290 213 --CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYT--FINALQGCSLVADFDIGRQIHGLI 272 (796)
Q Consensus 213 --~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~ 272 (796)
-.+ .+...++.|+.+ +++.+.+.|..++... -.+.+...+..|+...+.++.+.+
T Consensus 175 ~~g~t-~L~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 175 IHGDS-PLHIAARENRYD----CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp TTCCC-HHHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHhCCHh----HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 122 233334445433 3344444554443211 112333344445554455544444
No 297
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.94 E-value=1.3e+02 Score=28.86 Aligned_cols=108 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc---CC
Q 036290 626 YAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRN---GY 702 (796)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 702 (796)
+...|++++|+..|+.+. +...+.......+.+++.+++.... .++...-+..-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icr--------EYilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETAR--------EYILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCccc
Q ss_pred hHHHHHHHHhC---CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290 703 LEDAKHVIEIM---PFQPSP--TVYRSLLSGCRIHGNKELGEWASEKLLLLLPK 751 (796)
Q Consensus 703 ~~~A~~~~~~~---~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 751 (796)
..+..++---+ +++|.- -+.+.-+..+.|.+|+..|..+.++++++.|.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.77 E-value=64 Score=29.25 Aligned_cols=109 Identities=12% Similarity=0.174 Sum_probs=54.0
Q ss_pred HHHccCChhHHHHHhcccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCccc---HHHHHHHHhccCCh
Q 036290 88 MYSKCGYFGWGLRVFDEMAER---NLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFA---VGSVMKVCVSMGAS 161 (796)
Q Consensus 88 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~~~~ 161 (796)
..++.|+.+....+++.-..+ +..-++ .+...++.|+.+-+. .+.+.|..++... -...+...+..|+.
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 346778888887777653332 222222 344446667655443 3444454443221 11233344445555
Q ss_pred hHHHHHHHHHHHhcCCCChh--HhhHHHHHHHccCChhHHHHHhhc
Q 036290 162 EFGYSIHCFALKIRIEKNPF--VGCSVLNFYAKLGDVAAAERVFYS 205 (796)
Q Consensus 162 ~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 205 (796)
+. .+.+.+.|..++.. .....+...+..|+.+-+..+++.
T Consensus 90 ~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 90 SM----VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HH----HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 43 34444556554432 122334445566777766666664
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.64 E-value=1e+02 Score=32.11 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHccCChhHHHHHhcccCCCCc-chHHH-------HHHHHHhcCCchHHHHHHHHHHHC
Q 036290 80 FLQNNLIAMYSKCGYFGWGLRVFDEMAERNL-VSWTL-------IVSAAIQNGEFDMGLKMYVDMKTN 139 (796)
Q Consensus 80 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~-------ll~~~~~~~~~~~a~~~~~~m~~~ 139 (796)
.++|.|+..|...+.++.|..+..+.+.|.. .+.+. +.+.+.-.+++.+|.+.|....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5677788888888888888888887766533 22222 234455677888888887776654
No 300
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.48 E-value=1.8e+02 Score=25.76 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 036290 630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP 685 (796)
Q Consensus 630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 685 (796)
+....+..+|..|...|+=- -..-|......+...|++.+|.++|+.-.+. +-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 33556667777776666554 3334555566666667777777777666644 4555
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.36 E-value=1.4e+02 Score=28.69 Aligned_cols=72 Identities=7% Similarity=0.020 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccC--cHHHHHHHHHHHHHhCCCCCchhHh
Q 036290 415 TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSE--NQQMVGQIHGAIIKTGFSSCGYICS 487 (796)
Q Consensus 415 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (796)
..+.++.-|...|+.++|.+.++++......+ ......+..++-+.+ ..+.+..++..+.+.|+-+......
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 35677888888899999999998886322222 233444555555542 2456667777777766554443333
No 302
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.09 E-value=94 Score=32.40 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----H--HHH-HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290 687 PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPS----P--TVY-RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA 755 (796)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 755 (796)
...++.+++.|...+.++.|..++.+..++.. . ..| ..+...+..++++.+|.+.+..+++.-|.+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 56688889999999999999999999854322 1 233 334555778899999999999999998876543
No 303
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.65 E-value=1.6e+02 Score=26.16 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC
Q 036290 664 KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM---PFQPS 718 (796)
Q Consensus 664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~ 718 (796)
.+...++.++|..|... |+--. ...|......+...|++.+|.++++.- +-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44577899999999866 88777 778889999999999999999999876 44554
No 304
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.59 E-value=66 Score=32.95 Aligned_cols=118 Identities=10% Similarity=-0.055 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHH
Q 036290 631 LVSEAMEIFDKMKLAN-LQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDA 706 (796)
Q Consensus 631 ~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A 706 (796)
..++-.+..+...+.. ... -..+...+..-+.+.|+++.|.+.+.++... -..+. ...+..+++++...+++..+
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~ 187 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYV 187 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 3444444455554422 222 2235677888899999999999999999854 33333 67788899999999999999
Q ss_pred HHHHHhC----CCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHccC
Q 036290 707 KHVIEIM----PFQPSPTVYRSL----LSGCRIHGNKELGEWASEKLLLLL 749 (796)
Q Consensus 707 ~~~~~~~----~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~ 749 (796)
...+++. ...++....+.+ +..+...+++..|-..|-.++.-.
T Consensus 188 ~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 188 KEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 9999887 223443333222 222467799999999998887543
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.46 E-value=52 Score=27.80 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=43.2
Q ss_pred hHHHHHHHHccCChhHHHHHhcccCCCCc---chHHHHHHHHHhcCC--chHHHHHHHHHHHCCCCCCc
Q 036290 82 QNNLIAMYSKCGYFGWGLRVFDEMAERNL---VSWTLIVSAAIQNGE--FDMGLKMYVDMKTNGFMPNE 145 (796)
Q Consensus 82 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 145 (796)
-+.++.-|...|+.++|.+.++++..|.. ..+.++..++-+.+. .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45678888888999999999998876633 234455555555432 34567888888877654433
No 306
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.40 E-value=1.8e+02 Score=27.87 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc--hHHHHHHHHHHHHhCCCCchh
Q 036290 517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA--YQRTKSIHPFVIKLGFNTEVY 585 (796)
Q Consensus 517 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 585 (796)
.+.++.-|...|+.++|.+.++++......+ ......+..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4567888888999999999999885221111 2333444455555432 455667777777766654433
No 307
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.35 E-value=93 Score=22.59 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=38.9
Q ss_pred HHHHHCCCCCCcccHHHHHHHHhccC-ChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCCh
Q 036290 134 VDMKTNGFMPNEFAVGSVMKVCVSMG-ASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDV 196 (796)
Q Consensus 134 ~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 196 (796)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34556676665543 44556665554 5666777888777777666666666666666666543
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.64 E-value=1.9e+02 Score=24.33 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC---hhhHHHHHHHHHhcCC--chHHHHHHHHHHhcCCcccHH
Q 036290 386 SSLIYMFCRCGAVEMAHSVFDNVSYKN---ITTWNELLSGYCFNCC--DADVLKTFCNIWESGVEVNGC 449 (796)
Q Consensus 386 ~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 449 (796)
+.++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 467777888888888888888887652 2234444445544322 456677777777766544443
No 309
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=35.45 E-value=3.1e+02 Score=26.34 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc---ccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChh--HhhHHH
Q 036290 113 WTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNE---FAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPF--VGCSVL 187 (796)
Q Consensus 113 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li 187 (796)
.+.|.. .++.|+.+....++.. .+..++. ... +.|...+..|+.+.++ .+.+.|..++.. .....+
T Consensus 25 ~~~L~~-A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~-t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L 95 (351)
T 3utm_A 25 KDELLE-AARSGNEEKLMALLTP---LNVNCHASDGRKS-TPLHLAAGYNRVRIVQ----LLLQHGADVHAKDKGGLVPL 95 (351)
T ss_dssp HHHHHH-HHHHTCHHHHHHHCCT---TTTTCCCSSTTCC-CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHH
T ss_pred chhHHH-HHHcCCHHHHHHHHHh---cCCCcccCCCCCC-CHHHHHHHcCCHHHHH----HHHHcCCCCCccCCCCCcHH
Confidence 344444 4678888877777754 2333332 222 3344444567765444 444566554332 222344
Q ss_pred HHHHccCChhHHHHHhhccCCC---CceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 036290 188 NFYAKLGDVAAAERVFYSISSD---DVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMD 245 (796)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 245 (796)
...+..|+.+-+..+++.-..+ |..-++.|..+ +..|+. ++++.+.+.|..|+
T Consensus 96 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~ 151 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA-ASKNRV----EVCSLLLSHGADPT 151 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHTTCH----HHHHHHHHTTCCTT
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCc
Confidence 5556778888777777754333 22233344333 445554 34444555565554
No 310
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.17 E-value=1.4e+02 Score=26.64 Aligned_cols=18 Identities=11% Similarity=-0.134 Sum_probs=9.2
Q ss_pred HHHHHccCChhHHHHHhc
Q 036290 86 IAMYSKCGYFGWGLRVFD 103 (796)
Q Consensus 86 i~~~~~~g~~~~A~~~~~ 103 (796)
+...++.|+.+....+++
T Consensus 10 l~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 10 ICNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334445555555555554
No 311
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=34.30 E-value=1.1e+02 Score=28.69 Aligned_cols=19 Identities=0% Similarity=-0.106 Sum_probs=11.0
Q ss_pred HHHHccCChhHHHHHhhcc
Q 036290 188 NFYAKLGDVAAAERVFYSI 206 (796)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~~ 206 (796)
...+..|+.+-+..+++.-
T Consensus 106 ~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 106 HIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp HHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHCC
Confidence 3344556666666666653
No 312
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.28 E-value=3.3e+02 Score=26.10 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 036290 115 LIVSAAIQNGEFDMGLKMYVDMKTNGFMPNE 145 (796)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 145 (796)
+.|-.-++.|+.+-+..+++ .|..||.
T Consensus 27 t~L~~Av~~g~~~~V~~LL~----~Gadvn~ 53 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLE----GGANVNF 53 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----HTCCTTC
T ss_pred hHHHHHHHcCCHHHHHHHHH----CCCCCCc
Confidence 33334456777655554443 4655553
No 313
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.43 E-value=3e+02 Score=25.01 Aligned_cols=90 Identities=10% Similarity=0.005 Sum_probs=46.8
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCc-------ccHHHHHHHHhc--cCChhHHHHHHHHHHHhcCCC---------
Q 036290 117 VSAAIQNGEFDMGLKMYVDMKTNGFMPNE-------FAVGSVMKVCVS--MGASEFGYSIHCFALKIRIEK--------- 178 (796)
Q Consensus 117 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~--------- 178 (796)
+...++.|+.+....+++.+...|..++. ...+.|..++.. .|+.+.++.+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 33445677777776677766666654443 233344444322 266666666665443332110
Q ss_pred -ChhHhhHHHHHHHccCChhHHHHHhhccC
Q 036290 179 -NPFVGCSVLNFYAKLGDVAAAERVFYSIS 207 (796)
Q Consensus 179 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 207 (796)
|.. ....+...+..|+.+-+..+++.-.
T Consensus 86 ~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 86 EFYQ-GHSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp TTTT-TCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccc-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 111 2233444556677777777776543
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.76 E-value=2.1e+02 Score=23.10 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC---hhhHHHHHHHHHhcCC--chHHHHHHHHHHhcCCcccHH
Q 036290 386 SSLIYMFCRCGAVEMAHSVFDNVSYKN---ITTWNELLSGYCFNCC--DADVLKTFCNIWESGVEVNGC 449 (796)
Q Consensus 386 ~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 449 (796)
+.++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 457777888888888888888887552 2234444445554432 356777777777776554443
No 315
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.90 E-value=2.5e+02 Score=25.71 Aligned_cols=85 Identities=11% Similarity=0.052 Sum_probs=47.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290 520 MMSALVHQGHNHEAVTIFHSLVEA--GEKP----DEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA 593 (796)
Q Consensus 520 li~~~~~~~~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 593 (796)
-+..+....++++|.+++++.... +.++ +.......+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456777788888888888776431 2222 112222233333333333334444444422 4456666667788
Q ss_pred HHhcCCHHHHHHHH
Q 036290 594 YAKCGDIKGARMAF 607 (796)
Q Consensus 594 ~~~~g~~~~A~~~~ 607 (796)
+.+.|+.++|.++|
T Consensus 101 L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 101 MIKLGLPEQALDLF 114 (235)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHCCChhHHHHHH
Confidence 88888888888877
No 316
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=29.28 E-value=5.6e+02 Score=27.49 Aligned_cols=333 Identities=8% Similarity=-0.039 Sum_probs=157.2
Q ss_pred HHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChH
Q 036290 285 NALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLD 364 (796)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 364 (796)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+=..| ......+..++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 4445556666777777776665 32344444455666667777666666666654443 223444555555555444332
Q ss_pred H--HHHHHHHHHHhC-----------CCCchh-HHHHHHHHHHhcCChHHHHHHHHhCCCCChh---hHHHHHHHHHhcC
Q 036290 365 L--GLQLQCLALHCG-----------FLDEEN-VTSSLIYMFCRCGAVEMAHSVFDNVSYKNIT---TWNELLSGYCFNC 427 (796)
Q Consensus 365 ~--a~~~~~~~~~~g-----------~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g 427 (796)
. ..+-++.+...| +.++.. ....++..+. +...+........ ++.. .+...+.-+.+.
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar~- 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTTG-ATDFTRQMAAVAFASVARQ- 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHSC-CCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhccC-CChhhHHHHHHHHHHHHhc-
Confidence 2 111111111111 112211 1122222221 1222222222221 1211 111223333333
Q ss_pred CchHHHHHHHHHHhcC-CcccHH--HHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHH
Q 036290 428 CDADVLKTFCNIWESG-VEVNGC--TFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFE 504 (796)
Q Consensus 428 ~~~~a~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 504 (796)
+.+.|...+....... ..+... ....+.......+...++...+...... ..+.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 6788888888876543 222222 2222333444455344555555554332 2344344455555567799999999
Q ss_pred HHhcCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290 505 FSNGAERLD---MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN 581 (796)
Q Consensus 505 ~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 581 (796)
.|+.|.... ....-=+..++...|+.++|..+|..+... . +|-.++.+ .+.|..... . ...+.
T Consensus 307 ~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~~-~------~~~~~ 372 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYEL-K------IDKAP 372 (618)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCCC-C------CCCCC
T ss_pred HHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCCC-C------CCCCC
Confidence 999887632 222233455667789999999999888642 1 33333322 111210000 0 00000
Q ss_pred C-ch-----hHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036290 582 T-EV-----YVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFD 640 (796)
Q Consensus 582 ~-~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 640 (796)
+ .. ......+..+...|....|...+.......+......+.......|.++.++....
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 00 01112344566778888887777554444444433444444455666666655443
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.04 E-value=1.7e+02 Score=26.79 Aligned_cols=21 Identities=0% Similarity=-0.263 Sum_probs=12.9
Q ss_pred HHHHHhCCCccHHHHHHHHHH
Q 036290 319 FGGFSENKNPGQTASLFHKFI 339 (796)
Q Consensus 319 i~~~~~~~~~~~a~~l~~~m~ 339 (796)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455566666666666666554
No 318
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.22 E-value=2e+02 Score=25.74 Aligned_cols=42 Identities=12% Similarity=-0.099 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCCCcc--hHHHHHHHhcccCChHHHHHHHHHHHH
Q 036290 334 LFHKFILSGSRPNHV--TFSILLRQCGKLLDLDLGLQLQCLALH 375 (796)
Q Consensus 334 l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~ 375 (796)
+++.+.+.|..++.. .-.+.+......|+...+.++.+.+.+
T Consensus 192 ~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 192 CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555554432 122344455566666666666655543
No 319
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.36 E-value=1.9e+02 Score=20.79 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=39.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290 538 HSLVEAGEKPDEYILGTILNSCAAIG-AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD 599 (796)
Q Consensus 538 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 599 (796)
+.|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..+....++.+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777777654 34555555554 455677888888777666666666666666666553
No 320
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.19 E-value=2.6e+02 Score=22.76 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=11.1
Q ss_pred HHHHHccCChhHHHHHhhc
Q 036290 187 LNFYAKLGDVAAAERVFYS 205 (796)
Q Consensus 187 i~~~~~~g~~~~A~~~~~~ 205 (796)
+...++.|+.+-+.-+++.
T Consensus 105 L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 105 IHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhChHHHHHHHHhc
Confidence 3444556666666666655
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.18 E-value=1.8e+02 Score=25.97 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=10.4
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036290 695 DMLSRNGYLEDAKHVIEIM 713 (796)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~ 713 (796)
-.|.+.|.+++|.+++++.
T Consensus 122 ~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHH
Confidence 3445555555555555554
No 322
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.09 E-value=6.8e+02 Score=27.08 Aligned_cols=24 Identities=13% Similarity=-0.125 Sum_probs=15.6
Q ss_pred HHHHHHHhcccCChHHHHHHHHHH
Q 036290 350 FSILLRQCGKLLDLDLGLQLQCLA 373 (796)
Q Consensus 350 ~~~ll~~~~~~~~~~~a~~~~~~~ 373 (796)
.-.+|--|.++|++++|.++....
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445666677777777777766443
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.07 E-value=1.7e+02 Score=26.14 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=28.2
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhh--HHHHHHhhccCCCchHHHHHHHHHHHhcCC
Q 036290 221 YAHCGYGFEALNVVSSMLFEGITMDKYT--FINALQGCSLVADFDIGRQIHGLIIRSEVE 278 (796)
Q Consensus 221 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 278 (796)
.+..|+. ++++.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..
T Consensus 128 A~~~~~~----~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 128 AACVGSE----EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHcCCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 3445554 34455555666554321 113344455666666666666666666543
No 324
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.00 E-value=3.1e+02 Score=23.02 Aligned_cols=50 Identities=8% Similarity=0.169 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 036290 635 AMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP 685 (796)
Q Consensus 635 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 685 (796)
+..+|..|..+|+=- -+.-|......+...|++.+|.++|+.-.+. +-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 555555555555443 2233444444555555555555555555533 3444
No 325
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.90 E-value=3.6e+02 Score=23.80 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=39.6
Q ss_pred HhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCc-----HHHHHHHHHHHHHhCCCC
Q 036290 424 CFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSEN-----QQMVGQIHGAIIKTGFSS 481 (796)
Q Consensus 424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 481 (796)
.+-.+++.|+-++-+|.+.| .|....-..++-+.-..|. +..|...++.....|.|-
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 35678999999999999999 7777766667766655543 444555555555566443
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.66 E-value=3e+02 Score=23.77 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=28.4
Q ss_pred HccCChhHHHHHhhccCCC-CceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 036290 191 AKLGDVAAAERVFYSISSD-DVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDK 246 (796)
Q Consensus 191 ~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 246 (796)
++.|+++....+++.-... +...-.+.+...+..|+.+.-.++.+.+.+.|..++.
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 4556666655555543211 1000113344445556655556667777777766554
No 327
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=24.13 E-value=1.6e+02 Score=27.75 Aligned_cols=18 Identities=22% Similarity=-0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhHHHH
Q 036290 83 NNLIAMYSKCGYFGWGLR 100 (796)
Q Consensus 83 ~~li~~~~~~g~~~~A~~ 100 (796)
...+...+..|+.++..+
T Consensus 16 ~~~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDG 33 (285)
T ss_dssp ------------------
T ss_pred HHHHHHHhhcCCCCCccc
Confidence 344455555565555555
No 328
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.70 E-value=3.2e+02 Score=22.86 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036290 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP 649 (796)
Q Consensus 615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 649 (796)
-...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 100 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 100 SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555555556666666666666655555555
No 329
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=23.67 E-value=3.6e+02 Score=23.64 Aligned_cols=177 Identities=12% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHccCChhHHHHHhcccCCCCcchHH--HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChh
Q 036290 85 LIAMYSKCGYFGWGLRVFDEMAERNLVSWT--LIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASE 162 (796)
Q Consensus 85 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 162 (796)
.+...++.|+.+-+..+++.-..++..... +.+...+..|+.+-+..+++.-...--.++....+.+..++....
T Consensus 28 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~--- 104 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV--- 104 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTC---
T ss_pred hHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCc---
Q ss_pred HHHHHHHHHHHhcCCCChhH--hhHHHHHHHccCChhHHHHHhhccCCCCceeH--HHHHHHHHhCCCchHHHHHHHHHH
Q 036290 163 FGYSIHCFALKIRIEKNPFV--GCSVLNFYAKLGDVAAAERVFYSISSDDVGCW--NAMIGGYAHCGYGFEALNVVSSML 238 (796)
Q Consensus 163 ~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 238 (796)
.++.+.+.+.|..++... ....+...+..|+.+-+..+++.-..++.... .+.+...++.|+. ++++.+.
T Consensus 105 --~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll 178 (223)
T 2f8y_A 105 --EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY----ETAKVLL 178 (223)
T ss_dssp --HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH----HHHHHHH
T ss_pred --HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH----HHHHHHH
Q ss_pred HCCCCCCHhhHH--HHHHhhccCCCchHHHHHHH
Q 036290 239 FEGITMDKYTFI--NALQGCSLVADFDIGRQIHG 270 (796)
Q Consensus 239 ~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~ 270 (796)
+.|..++..... +.+...+..+..+-++-+++
T Consensus 179 ~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 179 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
No 330
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.64 E-value=2e+02 Score=24.01 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=40.2
Q ss_pred HHHHHCCCCCCHhhHHHHHHhhccCC-CchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCH
Q 036290 235 SSMLFEGITMDKYTFINALQGCSLVA-DFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGM 297 (796)
Q Consensus 235 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 297 (796)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446677877777655 3455555555 5667888888888877666666555555666666543
No 331
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.62 E-value=4.6e+02 Score=24.19 Aligned_cols=47 Identities=15% Similarity=-0.054 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc
Q 036290 582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH 629 (796)
Q Consensus 582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 629 (796)
++..+-...+.+++..|+.+ +...+.+.+..++...-...+.++...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 34444444555555554422 222222444444444444444444443
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.46 E-value=4e+02 Score=23.49 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCch-----HHHHHHHHHHHHhCCC
Q 036290 519 AMMSALV---HQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAY-----QRTKSIHPFVIKLGFN 581 (796)
Q Consensus 519 ~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~ 581 (796)
-+|+++. +..+++.|+-.+.+|.+.| .|....-..++-+....|.- ..|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455554 4589999999999999999 77766666666676666642 2333444444444543
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.46 E-value=2.3e+02 Score=23.62 Aligned_cols=67 Identities=15% Similarity=0.035 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCC
Q 036290 228 FEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSS 295 (796)
Q Consensus 228 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 295 (796)
.....+.+.|.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 9 ~~~~~~~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 334
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.20 E-value=1.9e+02 Score=23.58 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCHhhHHHHHHhhccCC-CchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCC
Q 036290 235 SSMLFEGITMDKYTFINALQGCSLVA-DFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSS 295 (796)
Q Consensus 235 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 295 (796)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 335
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.11 E-value=62 Score=29.97 Aligned_cols=54 Identities=15% Similarity=-0.095 Sum_probs=34.6
Q ss_pred HHHHhccCChhHHHHHHHHHHHhcCCCCh------hHhhHHHHHHHcc---CChhHHHHHhhc
Q 036290 152 MKVCVSMGASEFGYSIHCFALKIRIEKNP------FVGCSVLNFYAKL---GDVAAAERVFYS 205 (796)
Q Consensus 152 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~---g~~~~A~~~~~~ 205 (796)
|...+..|+.+....+++.+.+.|..++. ....+.+...+.. |+.+-+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc
Confidence 44455778888888888888888876553 1222333444444 777777777654
No 336
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.08 E-value=4.5e+02 Score=25.56 Aligned_cols=141 Identities=7% Similarity=0.028 Sum_probs=0.0
Q ss_pred HhHHHHHHHhcCCcchHHHHHhcCCCC---CHhhHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036290 486 CSSLIKSYVNFGQLDNSFEFSNGAERL---DMASWGAMMSALVH-QGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA 561 (796)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 561 (796)
...++.-|...|+.++|...++++..| .......+..++-+ ....+.+..++..+.+.|+-+.......+-..+..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cC----chHHHHHHHHHHHH----hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChH
Q 036290 562 IG----AYQRTKSIHPFVIK----LGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVS 633 (796)
Q Consensus 562 ~~----~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 633 (796)
.. +...|...+..+.. .|.-|-...+..+...+...|........+ +..+.+....+
T Consensus 94 l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~v---------------l~~l~~~~g~~ 158 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEI---------------LGLLCKSMGPK 158 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHH---------------HHHHHHHHCHH
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHH---------------HHHHHHHcCHH
Q ss_pred HHHHHHHH
Q 036290 634 EAMEIFDK 641 (796)
Q Consensus 634 ~A~~~~~~ 641 (796)
.+.++|.+
T Consensus 159 ~l~~~~~~ 166 (339)
T 1ug3_A 159 KVGTLWRE 166 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.08 E-value=1.4e+02 Score=24.85 Aligned_cols=60 Identities=13% Similarity=-0.021 Sum_probs=27.4
Q ss_pred HHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCCh
Q 036290 136 MKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDV 196 (796)
Q Consensus 136 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 196 (796)
|.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..+...-++.+...|-+
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 344454443322 223333333344445555555555555444444444444555555543
No 338
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.85 E-value=1.7e+02 Score=25.75 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=13.5
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290 727 SGCRIHGNKELGEWASEKLLLLLPKNDA 754 (796)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 754 (796)
..|.++|.+++|.+++++.+..+|.+..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 3366666666666666666555544433
No 339
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.80 E-value=3.6e+02 Score=23.72 Aligned_cols=39 Identities=8% Similarity=-0.071 Sum_probs=30.1
Q ss_pred HhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccC
Q 036290 424 CFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSE 462 (796)
Q Consensus 424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 462 (796)
.+-.+++.|+-++-+|.+.|..|....-..++-+.-..|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 346789999999999999998888777666666654443
No 340
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.47 E-value=3.1e+02 Score=22.58 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=12.3
Q ss_pred HHHHHccCChhHHHHHhcc
Q 036290 86 IAMYSKCGYFGWGLRVFDE 104 (796)
Q Consensus 86 i~~~~~~g~~~~A~~~~~~ 104 (796)
+...++.|+.+.+..+++.
T Consensus 12 l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3444566777777777764
No 341
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.90 E-value=1.6e+02 Score=29.27 Aligned_cols=124 Identities=9% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhHHHHHhcccCCCC----cchHHHHHHHHHhcCCchH-HHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 036290 83 NNLIAMYSKCGYFGWGLRVFDEMAERN----LVSWTLIVSAAIQNGEFDM-GLKMYVDMKTNGFMPNEFAVGSVMKVCVS 157 (796)
Q Consensus 83 ~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 157 (796)
..+|.-|...|++++|.+.++++..|+ ...+..+..++-+.....+ +-.++..+...|+-+...-...+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cC----ChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhcc
Q 036290 158 MG----ASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSI 206 (796)
Q Consensus 158 ~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 206 (796)
.. |...|..++..+...-+..+....+.+-..+...+...-...+|+.+
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~ 148 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQL 148 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHH
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHH
No 342
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=20.05 E-value=6.6e+02 Score=25.05 Aligned_cols=159 Identities=11% Similarity=0.050 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHh-CCCC---CchhHhHHHHHHHhcCC-cchHHHHHhcCCC---CCHhhH---
Q 036290 449 CTFFYVVETCCRSENQQMVGQIHGAIIKT-GFSS---CGYICSSLIKSYVNFGQ-LDNSFEFSNGAER---LDMASW--- 517 (796)
Q Consensus 449 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~--- 517 (796)
.....+...+...|+.++..+++...... +..+ .......+++.+....+ .+.-.++.....+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777777777666655332 1111 12334455555555432 2222222222221 111222
Q ss_pred ---HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCchHHHHHHHHHHHH--hCCCCchhHH
Q 036290 518 ---GAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE-----YILGTILNSCAAIGAYQRTKSIHPFVIK--LGFNTEVYVA 587 (796)
Q Consensus 518 ---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 587 (796)
.-++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...+++.++...+..... ..+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14566677777777777777777553222221 2233444556666777777777666554 2222333332
Q ss_pred HHH----HHHHH-hcCCHHHHHHHH
Q 036290 588 SAV----IDAYA-KCGDIKGARMAF 607 (796)
Q Consensus 588 ~~l----i~~~~-~~g~~~~A~~~~ 607 (796)
..+ ..++. ..+++.+|...|
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHH
Confidence 222 12233 566666666555
Done!