BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036292
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 349 bits (895), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 187/310 (60%), Positives = 228/310 (73%), Gaps = 4/310 (1%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPS-KSQLLDHFKNLGVNF 59
M S+S+IL IG TGYIG+ + +AS+ GH TF+LVREST S S K+QLL+ FK G N
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60
Query: 60 VIGDVLNQESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKEAGNVK-ILPVGIWIDDDR 118
V G + + SLV+A+K VDVVISTVG I QV II AIKE G VK P D D
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN 120
Query: 119 IHGAVEPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEATAPPRDKVVI 178
+H AVEPAKS VKAK+RRA+EAEGIPYTYV+S G+FL +L+Q TAPPRDKVVI
Sbjct: 121 VH-AVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVI 179
Query: 179 LGDGNPKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKIGKTL 238
LGDGN + V+ KE+D+ TFTIKAVDDPRTLNK LY++ P N S N+LV++WE+KI KTL
Sbjct: 180 LGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTL 239
Query: 239 EREYVSEEQLLKNIQEAAPPLGRLLSIYHSAFVEGVQTDFKIEPSFGVEASQLYPDVKYT 298
E+ YV EE++LK I + P ++I HS FV+G QT+F+I P+ GVEASQLYPDVKYT
Sbjct: 240 EKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPA-GVEASQLYPDVKYT 298
Query: 299 TVDEYLNQFV 308
TVDEYL+ FV
Sbjct: 299 TVDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/309 (54%), Positives = 229/309 (74%), Gaps = 5/309 (1%)
Query: 3 SKSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRES-TLSDP-SKSQLLDHFKNLGVNFV 60
+++KIL +G TG IG+ IV AS+KAG+ T+ LVR++ T ++P +K +L+D++++LGV +
Sbjct: 1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 61 IGDVLNQESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKEAGNVK-ILPVGIWIDDDRI 119
GD+ + E+LVKAIKQVD+VI G LI DQVKII AIKEAGNVK P +D DR
Sbjct: 61 EGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDR- 119
Query: 120 HGAVEPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEATAPPRDKVVIL 179
H AVEP + KA IRR +EAEG+PYTY+ + G+FL NL+Q +AT PPRDKVVIL
Sbjct: 120 HDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVIL 179
Query: 180 GDGNPKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKIGKTLE 239
GDGN K Y E DV TFTI+A +DP TLNK ++I+ P N + N+++++WE+KIGKTLE
Sbjct: 180 GDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLE 239
Query: 240 REYVSEEQLLKNIQEAAPPLGRLLSIYHSAFVEGVQTDFKIEPSFGVEASQLYPDVKYTT 299
+ YVSEEQ+LK+IQE++ P LL++YHS ++G ++I+P+ +EAS+ YPDV YTT
Sbjct: 240 KTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKG-DAVYEIDPAKDIEASEAYPDVTYTT 298
Query: 300 VDEYLNQFV 308
DEYLNQFV
Sbjct: 299 ADEYLNQFV 307
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 257 bits (657), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/314 (43%), Positives = 205/314 (65%), Gaps = 7/314 (2%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFV 60
M KS++L +GGTGYIGK IV AS+ GH T+VL R +S+ K Q+L +FK LG +
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 61 IGDVLNQESLVKAIKQVDVVISTV-GHTL---IADQVKIIAAIKEAGNVK-ILPVGIWID 115
+ + + LV A+KQVDVVIS + G L I +Q+K++ AIKEAGN+K LP +D
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMD 120
Query: 116 DDRIHGAVEPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEA-TAPPRD 174
D + A++P T + K K+RRA+EA IPYTYV+S G+F +L+Q + PPRD
Sbjct: 121 PDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRD 180
Query: 175 KVVILGDGNPKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKI 234
KV+I GDGN K ++ EDDV T+TIK++DDP+TLNK +YI+PP NI S +++ +WER
Sbjct: 181 KVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLS 240
Query: 235 GKTLEREYVSEEQLLKNIQEAAPPLGRLLSIYHSAFVEGVQTDFKIEPSFGVEASQLYPD 294
+ L++ Y+S + L ++++ + + + F G +F+I P+ +EA++LYP+
Sbjct: 241 EQNLDKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPN-AIEATKLYPE 299
Query: 295 VKYTTVDEYLNQFV 308
VKY T+D YL ++V
Sbjct: 300 VKYVTMDSYLERYV 313
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 184/305 (60%), Gaps = 4/305 (1%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTL-SDPSKSQLLDHFKNLGVNFVIGDV 64
KI+ GGTGYIGKF+V AS+ H TF+ R T S PS QL + F+++GV + G++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 65 LNQESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKEAGNVK-ILPVGIWIDDDRIHGAV 123
E +V +KQVD+VIS + +I+ Q+ II AIK AGN+K LP ++DRI +
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIK-PL 124
Query: 124 EPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEATAPPRDKVVILGDGN 183
P +S K IRRA+EA +PYTYV++ +F+ L P D +VI G G
Sbjct: 125 PPFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGTGE 184
Query: 184 PKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKIGKTLEREYV 243
K V N E+D+A +TIK DPR N+ + +PP NI S N+L+S+WE K G + ++ ++
Sbjct: 185 TKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHM 244
Query: 244 SEEQLLKNIQEAAPPLGRLLSIYHSAFVEGVQTDFKIEPSFGVEASQLYPDVKYTTVDEY 303
+EQL++ QE P +SI HS FV+G +++ +EAS LYP++++T++D
Sbjct: 245 PDEQLVRLSQELPQPQNIPVSILHSIFVKGDLMSYEMRKD-DIEASNLYPELEFTSIDGL 303
Query: 304 LNQFV 308
L+ F+
Sbjct: 304 LDLFI 308
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 187/306 (61%), Gaps = 10/306 (3%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFVIGD 63
KSKIL GGTGYIG +V+ S+K GH T+V R ++ SK+ LLD F++LG V G+
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 62
Query: 64 VLNQESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKEAGNVK-ILPVGIWIDDDRIHGA 122
+ E LV+ +K+VDVVIS + I DQ KI+ AIK AGN+K LP +++DRI+ A
Sbjct: 63 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN-A 121
Query: 123 VEPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEATAPPRDKVVILGDG 182
+ P ++ K IRRA+E IPYTYV++ +F+ L +P P+D++ + G G
Sbjct: 122 LPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTG 178
Query: 183 NPKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKIGKTLEREY 242
K N E D+ +TIK DPR LN+ + +P NI + +L+S WE+KIGK ++ +
Sbjct: 179 EAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIH 238
Query: 243 VSEEQLLKNIQEAAPPLGRLLSIYHSAFVEGVQTDFKIEPSFGVEASQLYPDVKYTTVDE 302
V EE+++ +E P ++I H F++G + + + VEAS LYP++K+TT+DE
Sbjct: 239 VPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDE 297
Query: 303 YLNQFV 308
L+ FV
Sbjct: 298 LLDIFV 303
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 207 bits (528), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 187/306 (61%), Gaps = 10/306 (3%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFVIGD 63
KSKIL GGTGYIG +V+ S+K GH T+V R ++ SK+ LLD F++LG V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNQESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKEAGNVK-ILPVGIWIDDDRIHGA 122
+ E LV+ +K+VDVVIS + I DQ KI+ AIK AGN+K LP +++DRI+ A
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN-A 125
Query: 123 VEPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEATAPPRDKVVILGDG 182
+ P ++ K IRRA+E IPYTYV++ +F+ L +P P+D++ + G G
Sbjct: 126 LPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTG 182
Query: 183 NPKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKIGKTLEREY 242
K N E D+ +TIK DPR LN+ + +P NI + +L+S WE+KIGK ++ +
Sbjct: 183 EAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIH 242
Query: 243 VSEEQLLKNIQEAAPPLGRLLSIYHSAFVEGVQTDFKIEPSFGVEASQLYPDVKYTTVDE 302
V EE+++ +E P ++I H F++G + + + VEAS LYP++K+TT+DE
Sbjct: 243 VPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDE 301
Query: 303 YLNQFV 308
L+ FV
Sbjct: 302 LLDIFV 307
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 187/306 (61%), Gaps = 10/306 (3%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFVIGD 63
KSKIL GGTGYIG +V+ S+K GH T+V R ++ SK+ LLD F++LG V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNQESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKEAGNVK-ILPVGIWIDDDRIHGA 122
+ E LV+ +K+VDVVIS + I DQ KI+ AIK AGN+K LP +++DRI+ A
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN-A 125
Query: 123 VEPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEATAPPRDKVVILGDG 182
+ P ++ + IRRA+E IPYTYV++ +F+ L +P P+D++ + G G
Sbjct: 126 LPPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTG 182
Query: 183 NPKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKIGKTLEREY 242
K N E D+ +TIK DPR LN+ + +P NI + +L+S WE+KIGK ++ +
Sbjct: 183 EAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIH 242
Query: 243 VSEEQLLKNIQEAAPPLGRLLSIYHSAFVEGVQTDFKIEPSFGVEASQLYPDVKYTTVDE 302
V EE+++ +E P ++I H F++G + + + VEAS LYP++K+TT+DE
Sbjct: 243 VPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDE 301
Query: 303 YLNQFV 308
L+ FV
Sbjct: 302 LLDIFV 307
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 186/306 (60%), Gaps = 10/306 (3%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFVIGD 63
KSKIL GGTGYIG +V+ S+K GH T+V R ++ SK+ LLD F++LG V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNQESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKEAGNVK-ILPVGIWIDDDRIHGA 122
+ E LV+ +K+VDVVIS + DQ KI+ AIK AGN+K LP +++DRI+ A
Sbjct: 67 LDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN-A 125
Query: 123 VEPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEATAPPRDKVVILGDG 182
+ P ++ K IRRA+E IPYTYV++ +F+ L +P P+D++ + G G
Sbjct: 126 LPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTG 182
Query: 183 NPKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKIGKTLEREY 242
K N E D+ +TIK DPR LN+ + +P NI + +L+S WE+KIGK ++ +
Sbjct: 183 EAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIH 242
Query: 243 VSEEQLLKNIQEAAPPLGRLLSIYHSAFVEGVQTDFKIEPSFGVEASQLYPDVKYTTVDE 302
V EE+++ +E P ++I H F++G + + + VEAS LYP++K+TT+DE
Sbjct: 243 VPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTIDE 301
Query: 303 YLNQFV 308
L+ FV
Sbjct: 302 LLDIFV 307
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 173/310 (55%), Gaps = 5/310 (1%)
Query: 2 ASKSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFVI 61
+ K ++L G TG+IG+F+ AS+ A T++L R S PSK+++ ++ G V
Sbjct: 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVY 66
Query: 62 GDVLNQESLVKAIKQ--VDVVISTVGHTLIADQVKIIAAIKEAGNVK-ILPVGIWIDDDR 118
G + QE++ K +K+ +D+V+STVG I DQ+ ++ A+K G +K LP D +R
Sbjct: 67 GLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNR 126
Query: 119 IHGAVEPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEATAPPRDKVVI 178
VEP + K ++R+ VE GIP+TY+ + N P PP D I
Sbjct: 127 AD-PVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQI 185
Query: 179 LGDGNPKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKIGKTL 238
GDGN KA + D+ FT+K VDD RTLNK+++ +P N + N+L S+WE+KIG+TL
Sbjct: 186 YGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTL 245
Query: 239 EREYVSEEQLLKNIQEAAPPLGRLLSIYHSAFVEGVQTDFKIEPSFGVEASQLYPDVKYT 298
R V+E+ LL E P + + H F++G Q +F I+ VE + LYP+ +
Sbjct: 246 PRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFR 305
Query: 299 TVDEYLNQFV 308
TV+E +++
Sbjct: 306 TVEECFGEYI 315
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFV 60
MA K KI G TG G + +V+AG++ VLVR+S+ PS+ H V
Sbjct: 1 MAVK-KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL-PSEGPRPAH-------VV 51
Query: 61 IGDVLNQESLVKAIKQVDVVISTVG-------HTLIADQVK-IIAAIKEAGNVKIL 108
+GDVL + K + D VI +G T++++ + I+AA+K G K++
Sbjct: 52 VGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVV 107
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFV 60
M IL GGTG GK V + + ++V + + +S++ F + + F
Sbjct: 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVY--SRDELKQSEMAMEFNDPRMRFF 75
Query: 61 IGDVLNQESLVKAIKQVDVVI--STVGHTLIAD 91
IGDV + E L A++ VD+ I + + H IA+
Sbjct: 76 IGDVRDLERLNYALEGVDICIHAAALKHVPIAE 108
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNL-----GVN 58
K ++ GGTG++G +I+++ ++ G+ +R +DP + + + NL ++
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR----ADPERKRDVSFLTNLPGASEKLH 56
Query: 59 FVIGDVLNQESLVKAIK 75
F D+ N +S AI+
Sbjct: 57 FFNADLSNPDSFAAAIE 73
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG---VNFVIG 62
++L GG+GYIG ++ GH +L L + SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL---DNLCN-SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNQESLVKAIKQ--VDVVISTVGHTLIADQVK 94
D+ N+ + + + +D VI G + + V+
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|2WST|A Chain A, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|B Chain B, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|C Chain C, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|D Chain D, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|E Chain E, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|F Chain F, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
Length = 208
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 206 RTLNKNLYIQPPGNIYSFNDLV-SMWERKIGKTLEREYVSEEQLLKNIQEAAPPLGRLLS 264
+TL NLY GN+ S ++LV W K TL + + L+ N+ A P L + L+
Sbjct: 88 QTLGMNLYFDADGNVLSESNLVRGSWGMKDQDTLVTPIANGQYLMPNL-TAYPRLIQTLT 146
Query: 265 ---IYHSAFVE----------GVQTDFKIEPSFGVEASQLYPDVKYTTVDEYLNQF 307
IY A ++ G+ TD + ++G+ + + + T+ L QF
Sbjct: 147 SSYIYTQAHLDHNNSVVDIKIGLNTDLRPTAAYGLSFTMTFTNSPPTSFGTDLVQF 202
>pdb|4GJ1|A Chain A, Crystal Structure Of
1-(5-Phosphoribosyl)-5-[(5-Phosphoribosylamino)
Methylideneamino] Imidazole-4-Carboxamide Isomerase
(Hisa)
Length = 243
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 26 KAGHQTFVLVRESTLSDPSKSQ--LLDHF-KNLGVNFVIGDVLNQESLVKAIKQVDVVIS 82
KAG + LV + DPSK Q L++ K + VN +G + + VKA+ V
Sbjct: 42 KAGAKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRV 101
Query: 83 TVGHTLIADQVKIIAAIKEAGN 104
+G I D + +KE G+
Sbjct: 102 VIGSXAIKDATLCLEILKEFGS 123
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFVIGDVL 65
KI GGTG++G+++VE+ G+ +L R ++ ++ ++ ++ + D++
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTR------SIGNKAINDYEYRVSDYTLEDLI 57
Query: 66 NQESLVKAI 74
NQ + V A+
Sbjct: 58 NQLNDVDAV 66
>pdb|2R30|A Chain A, Crystal Structure Of Human Gitrl Mutant
Length = 130
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 177 VILGDGNPKAVYNKEDDVATFTI---KAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERK 233
+I G P A YN DVA F + K D +TL IQ G Y E
Sbjct: 49 LIYGQVAPNAAYN---DVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTY---------ELH 96
Query: 234 IGKTLEREYVSEEQLLKN 251
+G T++ + SE Q+LKN
Sbjct: 97 VGDTIDLIFNSEHQVLKN 114
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHQTFVL 34
K +IL GG G+IG + A V +G + VL
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVTVL 37
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 27/115 (23%)
Query: 3 SKSKILSIGGTGYIGKFIVEASVKAGHQTFVLV--------------------RESTLSD 42
S ++L GG GYIG V A ++ + + V+V R+ SD
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 43 PSKSQLLDHFKNLGVNFVIGDVLNQESLVKAIKQ---VDVVISTVGHTLIADQVK 94
K D + L V GDV N++ L + +D V+ + + V+
Sbjct: 61 GPKPPWADRYAALEV----GDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVR 111
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 156 NGHFLPNLSQ--PEATAPPRDKVVILGDGNPKAVYNKEDDVATFTIKAVD 203
N H +P L + EATA VV+ G G P + DD+A +I ++
Sbjct: 177 NSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 156 NGHFLPNLSQ--PEATAPPRDKVVILGDGNPKAVYNKEDDVATFTIKAVD 203
N H +P L + EATA VV+ G G P + DD+A +I ++
Sbjct: 177 NSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 156 NGHFLPNLSQ--PEATAPPRDKVVILGDGNPKAVYNKEDDVATFTIKAVD 203
N H +P L + EATA VV+ G G P + DD+A +I ++
Sbjct: 177 NSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 156 NGHFLPNLSQ--PEATAPPRDKVVILGDGNPKAVYNKEDDVATFTIKAVD 203
N H +P L + EATA VV+ G G P + DD+A +I ++
Sbjct: 177 NSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 23/136 (16%)
Query: 2 ASKSKILSIGGTGYIGKFIVEASVKAGHQ-TFVLVRESTLSDPSKSQLLD----HFKNLG 56
A K+K ++I G+GYIG + EA + + E L + D ++ G
Sbjct: 146 APKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHG 205
Query: 57 VNFVIGDVLNQESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKE----------AGNVK 106
VN V+G S V A ++VD I T TL ++K AI G V
Sbjct: 206 VNLVLG------SKVAAFEEVDDEIIT--KTLDGKEIKSDIAILCIGFRPNTELLKGKVA 257
Query: 107 ILPVGIWIDDDRIHGA 122
+L G I D+ +H +
Sbjct: 258 MLDNGAIITDEYMHSS 273
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
Length = 361
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFVIGDVL 65
KIL GG G+IG +V +K T V + + T + +S L D ++ NF D+
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES-LSDISESNRYNFEHADIC 60
Query: 66 NQESLVKAIKQ 76
+ + + +Q
Sbjct: 61 DSAEITRIFEQ 71
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKS 46
KI +G TG G IV + + GH+ +VR DP K+
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVR-----DPQKA 37
>pdb|4E4S|A Chain A, Crystal Structure Of Pika Gitrl
pdb|4E4S|B Chain B, Crystal Structure Of Pika Gitrl
pdb|4E4S|C Chain C, Crystal Structure Of Pika Gitrl
pdb|4E4S|D Chain D, Crystal Structure Of Pika Gitrl
pdb|4E4S|E Chain E, Crystal Structure Of Pika Gitrl
pdb|4E4S|F Chain F, Crystal Structure Of Pika Gitrl
Length = 125
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 199 IKAVDDPRTLNKNLYIQPPGNIYSFNDLVSMWERKIGKTLEREYVSEEQLLK 250
K D +TL + IQ GNIY FN G T+E + S++Q+LK
Sbjct: 66 CKNKDAIQTLTDSSKIQNLGNIYEFN---------AGDTIELRFNSDDQVLK 108
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 31/157 (19%)
Query: 7 ILSIGGTGYIGKFIVE--ASVKAGHQTFVLVRESTLSDP--SKSQLLDHFKNLGVNFVIG 62
+L +G G I + ++ A + QT + + + P + SQ+ + G
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQI-----------IXG 74
Query: 63 DVLNQESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKEAGNVK----ILPVGIWIDDDR 118
DVLN +L +A + D+V + + + Q + A +A +VK +L +GI+ D
Sbjct: 75 DVLNHAALKQAXQGQDIVYANLTGEDLDIQANSVIAAXKACDVKRLIFVLSLGIY---DE 131
Query: 119 IHGAVEPAKSTNVVKAK----IRR---AVEAEGIPYT 148
+ G + N V + RR A+EA G+ YT
Sbjct: 132 VPGKF--VEWNNAVIGEPLKPFRRAADAIEASGLEYT 166
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 156 NGHFLPNLSQ--PEATAPPRDKVVILGDGNPKAVYNKEDDVATFTIKAVD 203
N H +P L + EATA VV+ G G P + DD+A +I ++
Sbjct: 177 NSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNL----G 56
++ IL GG G+IG V +++ ++T+ ++ L+ S L++ K++
Sbjct: 21 QSNAXNILVTGGAGFIGSNFVHYXLQS-YETYKIINFDALT---YSGNLNNVKSIQDHPN 76
Query: 57 VNFVIGDVLNQESLVKAIKQVDVVI 81
FV G++ N E L IK+ DV +
Sbjct: 77 YYFVKGEIQNGELLEHVIKERDVQV 101
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVL-----VRESTLSDPSKSQLLDHFKNLGVNFV 60
K+L GG GYIG V ++AG+ V+ S P + + V F
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 61 IGDVLNQESLVKAIKQVD--VVISTVGHTLIADQVK 94
D+L+Q +L + K+ VI G + + V+
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQ 99
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 156 NGHFLPNLSQ--PEATAPPRDKVVILGDGNPKAVYNKEDDVATFTIKAVD 203
N H +P L + EATA VV+ G G P + DD+A +I ++
Sbjct: 177 NSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 3 SKSKI-LSIGGTGYIGKFIVEASVKAGHQTFVL--VRESTLSDPSKSQLLDHFKNLGVNF 59
S SKI L GG GYIG V ++ G+ V + ST ++ ++L + F
Sbjct: 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHH---IPF 65
Query: 60 VIGDVLNQESLVKAIKQ--VDVVISTVGHTLIADQVKI 95
D+ +++ L K K+ +D VI G + + +I
Sbjct: 66 YEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQI 103
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVL-----VRESTLSDPSKSQLLDHFKNLGVNFV 60
K+L GG GYIG V ++AG+ V+ S P + + V F
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 61 IGDVLNQESLVKAIKQVD--VVISTVGHTLIADQVK 94
D+L+Q +L + K+ VI G + + V+
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQ 99
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHQTFVL-----VRESTLSDPSKSQLLDHFKNLGVNFV 60
K+L GG GYIG V ++AG+ V+ S P + + V F
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 61 IGDVLNQESLVKAIKQVD--VVISTVGHTLIADQVK 94
D+L+Q +L + K+ VI G + + V+
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQ 99
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 5 SKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLG-VNFVIGD 63
+K+L GG G++G + ++ G V LS + L +LG FV GD
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVF---DNLSRKGATDNLHWLSSLGNFEFVHGD 58
Query: 64 VLNQESLVKAIKQ 76
+ N+ + + I +
Sbjct: 59 IRNKNDVTRLITK 71
>pdb|1OOP|A Chain A, The Crystal Structure Of Swine Vesicular Disease Virus
Length = 283
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 148 TYVASYGLNGHFLPNLSQPEATAPPRDKVVILGDGNPKAV----YNKEDDVATFTIKAVD 203
T V SY P++ E +APPR V +G GN ++ + + D T+ I ++
Sbjct: 154 TKVNSYSWQTSTNPSVFWTEGSAPPRMSVPFIGIGNAYSMFYDGWARFDKQGTYGISTLN 213
Query: 204 DPRTL 208
+ TL
Sbjct: 214 NMGTL 218
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 45/230 (19%)
Query: 49 LDHFKNLGVNFVIGDVLNQ----ESLVKAIKQVDVVISTVGHTLIADQVKIIAAIKEAGN 104
+D+FK+ GV+ +I D + ++L++ +KQ+ VI L+ D A +A
Sbjct: 175 VDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALA 234
Query: 105 VK-ILPVGIWIDDDRIHGAVEPAKSTNVVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNL 163
K P+G I ++ G+ + + + AV A G P ++ + G + ++
Sbjct: 235 FKEATPIGSII-VTKLDGSAKGGGALS--------AVAATGAPIKFIGT----GEKIDDI 281
Query: 164 SQPEATAPPRDKVVILGDGN-----------PKAVYNKEDDV-----ATFTIK----AVD 203
E PPR +LG G+ K V KE+D+ FT+K ++
Sbjct: 282 ---EPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQLE 338
Query: 204 DPRTLN--KNLYIQPPGNIYSF-NDLVSMWERKIGK-TLEREYVSEEQLL 249
R + K + PG YS +D++S+ E ++ K + + ++EE+LL
Sbjct: 339 AMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELL 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,171,735
Number of Sequences: 62578
Number of extensions: 379370
Number of successful extensions: 1134
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 55
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)