BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036294
MALTTSKLTELPFRNSLTLTSHSTPSLNHLPFSSSSRKTPSFQLLKPFSSLRTNQNPRTD
SQNQQFPKPRSPSTSAPWLNNWSRPKPPSTENANKLGGRNQIDEKQTSPDSYPRYSDSDN
KGRNAIERIVLRLRNLGLGSDDEEEGEEEEDDINGAATGEERLEDLLRREWVRPNTVLRE
VEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMY
LRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWR
AGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTDGSTARSVDEKSEVPVRILDHS
KPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLT
NAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMA
EELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVEEKVRSKTLEA
TPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVS
QAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGV
VENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKN
YRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEIGVSKDEEDGNI
RCSGDLKQFDHVSVLPQNEDDDYVSDEDFDSEADEDSELSSFESDDNDLSKNG

High Scoring Gene Products

Symbol, full name Information P value
EMB1865
embryo defective 1865
protein from Arabidopsis thaliana 3.6e-240
CFM3A
CRM family member 3A
protein from Arabidopsis thaliana 4.2e-134
CFM2
CRM family member 2
protein from Arabidopsis thaliana 4.5e-127
CRS1
ortholog of maize chloroplast splicing factor CRS1
protein from Arabidopsis thaliana 2.4e-116
AT4G13070 protein from Arabidopsis thaliana 1.7e-23
AT3G27550 protein from Arabidopsis thaliana 2.9e-23
AT2G28480 protein from Arabidopsis thaliana 8.6e-21
LOH1
LAG One Homologue 1
protein from Arabidopsis thaliana 8.3e-19
CAF1 protein from Arabidopsis thaliana 4.9e-11
AT4G31010 protein from Arabidopsis thaliana 1.8e-09
AT5G54890 protein from Arabidopsis thaliana 3.0e-09
CAF2 protein from Arabidopsis thaliana 1.2e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036294
        (833 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186...  2315  3.6e-240  1
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ...  1314  4.2e-134  1
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp...   981  4.5e-127  3
TAIR|locus:2181372 - symbol:CRS1 "ortholog of maize chlor...   900  2.4e-116  3
TAIR|locus:2123276 - symbol:AT4G13070 species:3702 "Arabi...   280  1.7e-23   1
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi...   296  2.9e-23   1
TAIR|locus:2056558 - symbol:AT2G28480 species:3702 "Arabi...   265  8.6e-21   1
TAIR|locus:2094438 - symbol:LOH1 "LAG One Homologue 1" sp...   255  8.3e-19   1
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi...   158  4.9e-11   3
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi...   140  1.8e-09   2
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi...   160  3.0e-09   2
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi...   138  1.2e-07   2


>TAIR|locus:2094997 [details] [associations]
            symbol:EMB1865 "embryo defective 1865" species:3702
            "Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=NAS] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0006655
            "phosphatidylglycerol biosynthetic process" evidence=RCA]
            [GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0016117
            "carotenoid biosynthetic process" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
            PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
            Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
            EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
            ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
            PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
            KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
            InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
            ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
            Uniprot:Q9LS51
        Length = 848

 Score = 2315 (820.0 bits), Expect = 3.6e-240, P = 3.6e-240
 Identities = 472/743 (63%), Positives = 566/743 (76%)

Query:    49 SSLRTNQNPRTDSQNQQFPKPRSPSTSAPWLNNWSRPKPPSTENANKLGGRNQIDEKQTX 108
             S+ R+N N R D +N + P P       P  +             N  G R +  E++  
Sbjct:    61 SNNRSNNNRRLDQRNHK-PTPPWIDKWPPSSSGAGGDHAGKKGGENNGGDRIRSAEEEAE 119

Query:   109 XXXXXXXXXXXNKGRNAIERIVLRLRNLGLGSXXXXXXXXXXXX-INGA----ATGXXXX 163
                        +KG+NAIERIVLRLRNLGLGS             ING      TG    
Sbjct:   120 AKLRYLEK---DKGQNAIERIVLRLRNLGLGSDDEDDVEDDEGGGINGGDVKPVTGEERL 176

Query:   164 XXXXXXXWVRPNTVLREVEG--EEDDSLLPWEREEEENL--RAGGEKPAGETRRRRMKAP 219
                    WVRP+ +L E E   EED+ LLPWE+ EEE    R  GE      ++RR +AP
Sbjct:   177 GDLLKREWVRPDMMLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRRARAP 236

Query:   220 TLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLA 279
             +LAELT+ED ELRRLRR+GMYLR RIN+PKAGLTQ VM KI+D WRK+ELVRLKFHEVLA
Sbjct:   237 SLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLA 296

Query:   280 TDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTD 339
              DMKTAHEIVERRTGG+VIWRAGSVMVVYRG +Y GP      + G  +TLFVP VSS  
Sbjct:   297 RDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKETLFVPDVSSA- 355

Query:   340 GSTARSVDEKSEVPVRILD-------HSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPV 392
             G  A +  +    P+ I D         + MTEEE E NSLLDSLGPRFQEWWGTG+LPV
Sbjct:   356 GDEATNAKDNQSAPLVIKDPIIKNPIRKENMTEEEVEFNSLLDSLGPRFQEWWGTGVLPV 415

Query:   393 DADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVA 452
             DADLLPP + GYKTPFRLLPTGMRS LTNAEMT+LR++ ++LPCHFALGRNRNHQGLA A
Sbjct:   416 DADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAA 475

Query:   453 ILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNV 512
             IL++WEKSL+AKIAVKRGIQNTNNKLMA+E+K+LTGG LL RNK+YIV+YRGKDFLP +V
Sbjct:   476 ILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDFLPSSV 535

Query:   513 ASALAEREQCAKQIQDVEEKVRSKTLEAT-PSGETEGQAPAGTLAEFYEAQKRWGREVSA 571
             A+ LAER++  K+IQDVEE+VR++ +EA  P G+ +  A AGTLAEFYEAQ RWG+E++ 
Sbjct:   536 AATLAERQELTKEIQDVEERVRNREIEAVQPVGD-KVPAEAGTLAEFYEAQARWGKEITP 594

Query:   572 EEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETIT 631
             + REKM+EEAS+  +AR+VKRI+HKL ++Q+K  RAE+LL+KIEASM+P+GPDYDQE I+
Sbjct:   595 DHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVIS 654

Query:   632 DEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTAR 691
             +EERAMFR+VGL+MKA+LP+GIRGVFDGV+ENMHLHWK+RELVKLI+KQK  A+VE+TAR
Sbjct:   655 EEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETAR 714

Query:   692 LLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEAL 751
             LLEYESGG+L+AIE+VPKGFALI+YRGKNYRRPISLRPRNLLTKAKALKRS+AMQRHEAL
Sbjct:   715 LLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEAL 774

Query:   752 SQHISDLENTIEQMKKEIGVSKD 774
             SQHIS+LE TIEQM+ ++  SK+
Sbjct:   775 SQHISELERTIEQMQSQL-TSKN 796

 Score = 733 (263.1 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
 Identities = 176/379 (46%), Positives = 214/379 (56%)

Query:     1 MALTTSKLTELPFRXXXXXXXXXXXXXX----XXPFSSSSRKTPSFQLLKPFSSLRTNQN 56
             MAL     TE+P R                     F S   K    Q+++PFSSLRT++ 
Sbjct:     1 MALAPLNFTEMPLRSSLPLTSSSRYCSSPSLHALLFYSLGVKPSRQQIVRPFSSLRTSER 60

Query:    57 PRTDSQNQQFPKPRSPSTSAPWLNNWSRPKPPST-----ENANKLGGRNQIDEKQTXXXX 111
                 S N +    R+   + PW++ W    PPS+     ++A K GG N   ++      
Sbjct:    61 SNNRSNNNRRLDQRNHKPTPPWIDKW----PPSSSGAGGDHAGKKGGENNGGDRIRSAEE 116

Query:   112 XXXXXXXX---NKGRNAIERIVLRLRNLGLGSXXXXXXXXXXXX-INGA----ATGXXXX 163
                        +KG+NAIERIVLRLRNLGLGS             ING      TG    
Sbjct:   117 EAEAKLRYLEKDKGQNAIERIVLRLRNLGLGSDDEDDVEDDEGGGINGGDVKPVTGEERL 176

Query:   164 XXXXXXXWVRPNTVLREVEG--EEDDSLLPWEREEEENL--RAGGEKPAGETRRRRMKAP 219
                    WVRP+ +L E E   EED+ LLPWE+ EEE    R  GE      ++RR +AP
Sbjct:   177 GDLLKREWVRPDMMLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRRARAP 236

Query:   220 TLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLA 279
             +LAELT+ED ELRRLRR+GMYLR RIN+PKAGLTQ VM KI+D WRK+ELVRLKFHEVLA
Sbjct:   237 SLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLA 296

Query:   280 TDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTD 339
              DMKTAHEIVERRTGG+VIWRAGSVMVVYRG +Y GP      + G  +TLFVP VSS  
Sbjct:   297 RDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKETLFVPDVSSA- 355

Query:   340 GSTARSVDEKSEVPVRILD 358
             G  A +  +    P+ I D
Sbjct:   356 GDEATNAKDNQSAPLVIKD 374

 Score = 56 (24.8 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
 Identities = 26/107 (24%), Positives = 46/107 (42%)

Query:   529 VEEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHAR 588
             VEE  R    E+        + P G    +Y   K + R +S   R  ++ +A   K + 
Sbjct:   709 VEETARLLEYESGGVLVAIEKVPKGFALIYYRG-KNYRRPISLRPRN-LLTKAKALKRSI 766

Query:   589 LVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQ-ETITDEE 634
              ++R E   A+SQ      ER + ++++ +    P Y + E   DE+
Sbjct:   767 AMQRHE---ALSQHIS-ELERTIEQMQSQLTSKNPSYSESEWENDED 809


>TAIR|locus:2094558 [details] [associations]
            symbol:CFM3A "CRM family member 3A" species:3702
            "Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
            intron splicing" evidence=IMP] [GO:0048316 "seed development"
            evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
            SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
            GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
            IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
            ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
            EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
            OMA:VEILRHE Uniprot:F4J2U9
        Length = 881

 Score = 1314 (467.6 bits), Expect = 4.2e-134, P = 4.2e-134
 Identities = 281/603 (46%), Positives = 390/603 (64%)

Query:   181 VEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMY 240
             V G   D   PWE+   +  +   E  A  T ++  +  +LAE+T+ + ELRRLR     
Sbjct:   180 VIGSNGDVGFPWEKMSAKEKK---ELEAEWTAKKENRY-SLAEMTLPESELRRLRNLTFR 235

Query:   241 LRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWR 300
                ++ +   G+TQ  +  I +KW+  E+VRLK     A +M+  HEI+E++TGGLVIWR
Sbjct:   236 TASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWR 295

Query:   301 AGSVMVVYRGNNYAGPSSK--PQPLDGDGDTLFVPHVSSTDGSTARSVDEKSEVP----- 353
             +G+ + +YRG +Y  PS K   Q  +       + +   T     +S DEK  +P     
Sbjct:   296 SGTSISLYRGVSYELPSGKWNKQRREETPPEAVIENHDETTTMVDKS-DEKVHLPQLEQE 354

Query:   354 ---VRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRL 410
                V   D + P+ E E E + LLD LGPRF +W G   LPVDADLLP  +  Y+ PFR+
Sbjct:   355 TTSVEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRV 414

Query:   411 LPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRG 470
             LP G+RS L   E T LRRLARS+P HFALGR+R  QGLA A+++LWEKS++AKIA+KRG
Sbjct:   415 LPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRG 474

Query:   471 IQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVE 530
             +Q+T ++ MAE+LK LTGG +L RNK ++V YRGK+FL   VA AL E+E+  + +QD E
Sbjct:   475 VQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEE 534

Query:   531 EKVRSKTLEA--TPSGETEGQ-APAGTLAEFYEAQKRWGREVSAEER-EKMVEEASKAKH 586
             E+ R +   A   PS E   +   AGTL E  +A  +WG+ +  ++  +++ +E    +H
Sbjct:   535 EQARLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRH 594

Query:   587 ARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMK 646
               LV+++E KLA ++ K L+AER LAK+E  + P+    D E+ITDEER MFR++GL+MK
Sbjct:   595 ENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMK 654

Query:   647 AFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIER 706
             AFL LG RGVFDG VENMHLHWKYRELVK+I K KT   V+  A  LE ESGGIL++I++
Sbjct:   655 AFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDK 714

Query:   707 VPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMK 766
             V KG+A+I YRG++Y+RP  LRP+NLLTK KAL RS+ +QR E L +HIS ++   +Q++
Sbjct:   715 VTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAKQLR 774

Query:   767 KEI 769
              EI
Sbjct:   775 AEI 777


>TAIR|locus:2096662 [details] [associations]
            symbol:CFM2 "CRM family member 2" species:3702
            "Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
            intron splicing" evidence=IMP] [GO:0000373 "Group II intron
            splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
            PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
            Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
            EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
            UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
            STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
            GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
            InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
            ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
            Uniprot:Q8L7C2
        Length = 1011

 Score = 981 (350.4 bits), Expect = 4.5e-127, Sum P(3) = 4.5e-127
 Identities = 201/402 (50%), Positives = 273/402 (67%)

Query:   369 ECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLR 428
             E + LL+ LGPRF +WW    LPVD DLLP  V  Y+ PFRLLP G+  +LT+ EMT +R
Sbjct:   328 EADRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIR 387

Query:   429 RLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTG 488
             RL R LPCHFALGRNRN QGLAVAI+KLWEK  +AKIAVKRG+QNTN++LMAEELK LTG
Sbjct:   388 RLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTG 447

Query:   489 GTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVEEKVRSKTLEATPSGETEG 548
             GTL+ R+K +IVLYRGKDFLP  V+SA+ ER    +Q   +E    + ++      E E 
Sbjct:   448 GTLISRDKDFIVLYRGKDFLPSAVSSAIEERR---RQTMIME----NSSVHGNKLTENEE 500

Query:   549 QAPAGTLAEFYEAQKRWGRE-VSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRA 607
             +     + E  E + +  ++ +   + +     + +A    ++++   KL+++  KK  A
Sbjct:   501 EIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEA----ILEKTSMKLSMALEKKANA 556

Query:   608 ERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLH 667
             E++LA +E    P   D D+E IT++E+ M R++GL+MK FL LG RGVFDG +ENMHLH
Sbjct:   557 EKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLH 616

Query:   668 WKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISL 727
             WKYRELVK+I  + ++      A +LE ESGGIL+A+E V KG+A+I YRGKNY RP  L
Sbjct:   617 WKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCL 676

Query:   728 RPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEI 769
             RP+ LL+K +ALKRSV  QR ++L  H+  L N IE++ +++
Sbjct:   677 RPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQL 718

 Score = 262 (97.3 bits), Expect = 4.5e-127, Sum P(3) = 4.5e-127
 Identities = 46/105 (43%), Positives = 75/105 (71%)

Query:   212 RRRRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVR 271
             R++  K P+LAELT+   ELRRLR  G+ L +++ + KAG+T+ ++  IH++WR  E+V+
Sbjct:   152 RKKEEKVPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVK 211

Query:   272 LKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGP 316
             +   ++   +MK  H+++E +TGGLVIWR+GS +++YRG NY  P
Sbjct:   212 IFCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYP 256

 Score = 152 (58.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
 Identities = 60/234 (25%), Positives = 106/234 (45%)

Query:   504 GKDFLPPNVASALAEREQCAKQIQDVEEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQK 563
             G+  LP +    +AE+    + +  VEEK  S T   T  GE  G+   G +  F    K
Sbjct:    51 GRKTLPQSAIQRIAEK---LRSLGFVEEKHDSPTRRIT--GEESGKNSPGEI--FVPLPK 103

Query:   564 RWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKL-RAERLLAKIEASMVPSG 622
             +         R     + S +  +  V +     A+S+  +L R  +   ++E       
Sbjct:   104 QL-----PIHRVGHTIDTSWSTPSYPVPKPGSGTAISRYHELKRVWKKETEMERKKEEKV 158

Query:   623 PDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKT 682
             P   + T+   E    R VG+R+   L +G  G+ +G+V  +H  W+  E+VK+  +  +
Sbjct:   159 PSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDIS 218

Query:   683 LAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKA 736
                ++ T  +LE ++GG++I   R   G  ++ YRG NY+ P  +  R+L  +A
Sbjct:   219 RMNMKRTHDVLETKTGGLVIW--R--SGSKILLYRGVNYQYPYFVSDRDLAHEA 268

 Score = 133 (51.9 bits), Expect = 0.00082, Sum P(2) = 0.00082
 Identities = 87/379 (22%), Positives = 163/379 (43%)

Query:   411 LPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRG 470
             +P+     L  AE+  LR +   L     +G+    +G+   I + W  + V KI  +  
Sbjct:   158 VPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCE-D 216

Query:   471 IQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASA--LAEREQCAKQIQD 528
             I   N K   + L++ TGG ++ R+   I+LYRG ++  P   S   LA          D
Sbjct:   217 ISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMD 276

Query:   529 ---VEEKVRSKTLEAT-PSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKA 584
                V+ + +    E++ PS   +   P  T       + R+  ++  E +  +VEEA + 
Sbjct:   277 QGVVDSREKQSIAESSAPSITNKMVKPMLTQGVGSPDKVRF--QLPGEVQ--LVEEADRL 332

Query:   585 KHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSG--PDYDQETITDEERAMFRRVG 642
                 L  R     A      +  + L A +     P    P      +TD+E    RR+G
Sbjct:   333 LEG-LGPRFTDWWAYDPLP-VDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLG 390

Query:   643 LRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTL-AYVEDTARLLEYESGGIL 701
               +     LG      G+   +   W+  EL K+  K+       E  A  L++ +GG L
Sbjct:   391 RPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTL 450

Query:   702 IAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENT 761
             I+ +   K F ++ YRGK++  P ++   + + + +  ++++ M+        +++ E  
Sbjct:   451 ISRD---KDF-IVLYRGKDFL-PSAVS--SAIEERR--RQTMIMENSSVHGNKLTENEEE 501

Query:   762 IEQ--MKKEIGV-SKDEED 777
             I+   +K++I + +KD++D
Sbjct:   502 IKPRAVKEDIELEAKDQKD 520

 Score = 121 (47.7 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
 Identities = 34/131 (25%), Positives = 65/131 (49%)

Query:   201 RAGGEKPAGETRRRRMKAPTLAELT---IEDEELRRLRRNGMYLRERINVPKAGLTQDVM 257
             +A  EK   +   R  ++P L+++    I ++E   LR+ G+ ++  + + + G+    +
Sbjct:   553 KANAEKVLADLENR--ESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTI 610

Query:   258 RKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIW----RAGSVMVVYRGNNY 313
               +H  W+  ELV++  +E          EI+E  +GG+++       G  ++VYRG NY
Sbjct:   611 ENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNY 670

Query:   314 AGPSS-KPQPL 323
               P   +PQ L
Sbjct:   671 ERPQCLRPQTL 681

 Score = 121 (47.7 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
 Identities = 88/400 (22%), Positives = 165/400 (41%)

Query:   226 IEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHE-VLATDMKT 284
             + D+E+  +RR G  L     + +    Q +   I   W K EL ++     V  T+ + 
Sbjct:   378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437

Query:   285 AHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTDGSTA- 343
               E ++  TGG +I R    +V+YRG ++  PS+    ++       +   SS  G+   
Sbjct:   438 MAEELKWLTGGTLISRDKDFIVLYRGKDFL-PSAVSSAIEERRRQTMIMENSSVHGNKLT 496

Query:   344 --------RSVDEKSEVPVRIL-DHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDA 394
                     R+V E  E+  +   DH +    +  + NS    L     +         +A
Sbjct:   497 ENEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANA 556

Query:   395 DLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAIL 454
             + +   ++  ++P   L    +  +TN E   LR++   +     LGR     G    + 
Sbjct:   557 EKVLADLENRESP--QLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMH 614

Query:   455 KLWE-KSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLL---QRNKFY-IVLYRGKDFLP 509
               W+ + LV  I  +  I+  +   +AE L++ +GG L+     +K Y I++YRGK++  
Sbjct:   615 LHWKYRELVKIICNEYSIEAAHK--VAEILEAESGGILVAVEMVSKGYAIIVYRGKNYER 672

Query:   510 PNVA---SALAEREQCAKQIQDVEEK-VRSKTLEATPSGETEGQAPAGTLAEFYEAQKRW 565
             P      + L++RE   + ++    K ++   L+ + + E   +     L E     + W
Sbjct:   673 PQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQ----LVEDSATNETW 728

Query:   566 GREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKL 605
                   E    MVEE ++ +H    K  E K+ +  +  L
Sbjct:   729 S---DGESSNMMVEEETENQHTEPEKARE-KIELGYSSDL 764

 Score = 95 (38.5 bits), Expect = 8.4e-23, Sum P(3) = 8.4e-23
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query:   414 GMRSRLTNAEMTDLRRLARSLPCH--FALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGI 471
             G+ + L+N E   LR+ A  +     FA+GR+    GLA  +   ++K+ +A + VK   
Sbjct:   870 GLVTDLSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRA 929

Query:   472 QNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRG-------KDFLPPN-VASAL 516
               T+ + +  +LK  TG  L+ +    ++LYRG       K F P N V S++
Sbjct:   930 NGTSVQEVIAKLKEETGALLVSQEPSKVILYRGWGAEEEMKSFYPNNNVKSSI 982

 Score = 80 (33.2 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
 Identities = 39/184 (21%), Positives = 75/184 (40%)

Query:   556 AEFYEAQKRWGREVSAEEREKMVEEASKAKHARLVKR-IEHKLAVSQAKKLRAERLLAKI 614
             +E   +Q+  G  + +     +  E   A  +    R + H   ++  +KL      +  
Sbjct:   797 SESASSQRHEGNSLDSTANLSVFAETGSANASSFHDRSLPHNSFLNANRKLPGSSTGSGS 856

Query:   615 EASMVPSGPDYDQETITD---EERAMFRRVGLRMKAFLP--LGIRGVFDGVVENMHLHWK 669
             + S +      +   +TD    ER + R+  L+MK   P  +G   V  G+   + +H++
Sbjct:   857 QISALRERKSENDGLVTDLSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQ 916

Query:   670 YRELVKLITKQKTLAY-VEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPI-SL 727
                L  +  K +     V++    L+ E+G +L++ E  P    +I YRG      + S 
Sbjct:   917 KNPLAIVNVKGRANGTSVQEVIAKLKEETGALLVSQE--PS--KVILYRGWGAEEEMKSF 972

Query:   728 RPRN 731
              P N
Sbjct:   973 YPNN 976

 Score = 40 (19.1 bits), Expect = 4.5e-127, Sum P(3) = 4.5e-127
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query:   123 RNAIERIVLRLRNLG 137
             ++AI+RI  +LR+LG
Sbjct:    57 QSAIQRIAEKLRSLG 71


>TAIR|locus:2181372 [details] [associations]
            symbol:CRS1 "ortholog of maize chloroplast splicing
            factor CRS1" species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0000373 "Group II intron splicing" evidence=IDA]
            InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 Gene3D:3.30.110.60
            SUPFAM:SSF75471 GO:GO:0000373 EMBL:AL391148 IPI:IPI00521200
            PIR:T51488 RefSeq:NP_197122.2 UniGene:At.50459 UniGene:At.54863
            ProteinModelPortal:Q9LF10 SMR:Q9LF10 PaxDb:Q9LF10 PRIDE:Q9LF10
            GeneID:831476 KEGG:ath:AT5G16180 TAIR:At5g16180 eggNOG:NOG322716
            HOGENOM:HOG000241574 InParanoid:Q9LF10 OMA:KIERSNQ
            ArrayExpress:Q9LF10 Genevestigator:Q9LF10 Uniprot:Q9LF10
        Length = 720

 Score = 900 (321.9 bits), Expect = 2.4e-116, Sum P(3) = 2.4e-116
 Identities = 196/405 (48%), Positives = 263/405 (64%)

Query:   367 EAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTD 426
             E E + LLD LGPR+ +WW     PVDADLLP  V+GY TP R  P   R++LT+ E+T 
Sbjct:   309 EREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTY 368

Query:   427 LRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSL 486
             LR +A+ LP HF LGRN   QGLA AI+KLWEK ++AKIA+K G  NTNN+ MA+EL+ L
Sbjct:   369 LRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYL 428

Query:   487 TGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVEEKVRS---KTLEATPS 543
             TGG L+ RNK+ IVLYRGKDFL   VA  + +RE+   + Q  EE  R    + LE   +
Sbjct:   429 TGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTN 488

Query:   544 GETEGQA-PAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQA 602
             G+   +   +GTL EF E Q+++G E+     E    EA KA+  + +K  EHKL++ ++
Sbjct:   489 GKQLKETNKSGTLLEFQELQRKFG-EMDPRNLET---EAEKARLEKELKSQEHKLSILKS 544

Query:   603 KKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVE 662
             K  ++   L K+ +   PS  D D E +T+EER   RR+GL+M + L LG RGVF GV+E
Sbjct:   545 KIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVME 604

Query:   663 NMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYR 722
              +H HWK+RE+ K+IT QK  + V  TA+ LE ES G+LI+IE++ +G A++ YRGKNY+
Sbjct:   605 GLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYK 664

Query:   723 RPIS-LRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMK 766
             RP S L  +NLLTK KAL+RSV MQR  +L       E  IE +K
Sbjct:   665 RPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLK 709

 Score = 225 (84.3 bits), Expect = 2.4e-116, Sum P(3) = 2.4e-116
 Identities = 57/159 (35%), Positives = 84/159 (52%)

Query:   190 LPWEREEEENLRAGGEKPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPK 249
             +PWEREEE  +           R ++   PT AEL +++  L RLRR    +R+ +NV K
Sbjct:   180 MPWEREEERFILR---------RMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRK 230

Query:   250 AGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYR 309
             AG+T+ V+ KI   W+ +EL  ++F   L  +M+ A EI+E +TGGLV+      +VVYR
Sbjct:   231 AGVTELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYR 290

Query:   310 GNNYAGPSSKPQPLDGDGDTLFVPHVSST-DGSTARSVD 347
             G    GPS   +  D    +L+        DG   R +D
Sbjct:   291 G----GPSYSSEGQDEISSSLYEREADRLLDGLGPRYMD 325

 Score = 56 (24.8 bits), Expect = 2.4e-116, Sum P(3) = 2.4e-116
 Identities = 25/103 (24%), Positives = 41/103 (39%)

Query:    42 FQLLKPFSSLRTNQNPRT--DSQNQQFPKPRSPSTSA------PWLNNWSRPKPPSTENA 93
             F   + F SL TN + R    SQ  QF + R  S +A      PW+      +P    + 
Sbjct:    44 FLSARAFPSLITNSSSRRAKSSQFDQFRENRGVSDAAIKVPTAPWMKGPLLLRPDEILDT 103

Query:    94 NKLGGRNQIDEKQTXXXXXXXXXXXXNKGRNAIERIVLRLRNL 136
              K     +++EK               +G+ A+++IV  +  L
Sbjct:   104 KKRNKPRKVEEKTFKALNRRESGV---RGKKAMKKIVRNVEKL 143


>TAIR|locus:2123276 [details] [associations]
            symbol:AT4G13070 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
            SMART:SM01103 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003723
            Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:BT022043 EMBL:BT029203
            EMBL:AK175251 EMBL:AK176471 EMBL:AK176848 IPI:IPI00516587
            RefSeq:NP_193043.2 UniGene:At.43316 ProteinModelPortal:Q67YJ7
            SMR:Q67YJ7 EnsemblPlants:AT4G13070.1 GeneID:826921
            KEGG:ath:AT4G13070 TAIR:At4g13070 eggNOG:NOG314366
            HOGENOM:HOG000241798 InParanoid:Q67YJ7 OMA:NELRFYR PhylomeDB:Q67YJ7
            ProtClustDB:CLSN2918582 Genevestigator:Q67YJ7 Uniprot:Q67YJ7
        Length = 343

 Score = 280 (103.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 75/193 (38%), Positives = 109/193 (56%)

Query:   592 RIEHKLAVSQAKKLRAERLLAKIEASMVPSGP--DYDQETITDEERAMFRRVGLRMKAFL 649
             RI +KL   +AK+ + E L+ K+    VP  P   YD E++T+EE+   +R G + K F+
Sbjct:   145 RIRYKL--EKAKR-KEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFV 201

Query:   650 PLGIRGVFDGVVENMHLHWKYRELVKLITKQ-----KTLAYVEDTARLLEYESGGILIAI 704
              +G RGVF GVV N+HLHWK  E VK+I K      +   Y E+ ARL    S GI+I +
Sbjct:   202 LVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARL----SKGIVIDV 257

Query:   705 ERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQ 764
             +  P    ++ YRGKNY RP  + P + L+K KAL++    Q  E  S+ I  LE  +E+
Sbjct:   258 K--PNN-TIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKLEKELEE 314

Query:   765 MKKEIGVSKDEED 777
               K +   K ++D
Sbjct:   315 YHKYVARHKKKKD 327


>TAIR|locus:2091458 [details] [associations]
            symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
            SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
            Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
            RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
            SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
            KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
            HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
            ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
        Length = 491

 Score = 296 (109.3 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 69/221 (31%), Positives = 129/221 (58%)

Query:   566 GREVSAEEREKMVEEASKA-KHARLVKRIEHKLAVSQAKKL----RAER----LLAKIEA 616
             GR + ++   +M +E+ K  +  R  K+++ KL   + + +    RA++    LL K++ 
Sbjct:    17 GRSMRSKVESRMRKESGKTLREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALLLQKLKK 76

Query:   617 SMVPS--GPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELV 674
               +P    P +D E  T E+   F+++G + K ++P+G+RGVF GVV+NMH+HWK+ E V
Sbjct:    77 YDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETV 136

Query:   675 KLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLT 734
             ++         +++ A ++   SGG++I I  V     +I +RG+NYR+P +L P N LT
Sbjct:   137 QVCCDNFPKEKIKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLT 193

Query:   735 KAKALKRSVAMQRHEALSQHISDLENTIEQMKKEIGVSKDE 775
             K KAL ++   +  +AL     +++ T +Q+++ +GV+ ++
Sbjct:   194 KRKALFKA---RFEQALESQKLNIKKTEQQLRR-MGVNPED 230


>TAIR|locus:2056558 [details] [associations]
            symbol:AT2G28480 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
            SMART:SM01103 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
            EMBL:AC006587 Gene3D:3.30.110.60 SUPFAM:SSF75471
            HOGENOM:HOG000241798 EMBL:BT011753 EMBL:AK226713 IPI:IPI00526248
            PIR:D84685 RefSeq:NP_180415.1 UniGene:At.50106
            ProteinModelPortal:Q9SK10 SMR:Q9SK10 EnsemblPlants:AT2G28480.1
            GeneID:817396 KEGG:ath:AT2G28480 TAIR:At2g28480 eggNOG:NOG245924
            InParanoid:Q9SK10 OMA:ANRKDPR PhylomeDB:Q9SK10
            ProtClustDB:CLSN2913133 Genevestigator:Q9SK10 Uniprot:Q9SK10
        Length = 372

 Score = 265 (98.3 bits), Expect = 8.6e-21, P = 8.6e-21
 Identities = 71/222 (31%), Positives = 116/222 (52%)

Query:   562 QKRWGREVSAEERE---KMVEEASKAKHARLVKRIEHKLAVSQAKK-LRAERLLAKIEAS 617
             +K+   E +A  R+   ++  +  K K     +RI++KL  ++ K+ L  ERL  + E +
Sbjct:    94 RKKEREERNAANRKDPRRLTVKGKKKKFVNAEERIKYKLEKAKIKEALLIERL-KRYEVA 152

Query:   618 MVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLI 677
              V  GP+     IT EER   +++G +   ++P+G RGVF GV+ NMHLHWK  E VK+I
Sbjct:   153 KV-QGPEVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVI 211

Query:   678 TKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAK 737
                     V+  A  L   SGG+ + I  +     +IFYRGK Y +P  + P + L+K +
Sbjct:   212 CNNSKPGQVQQYAEELAKLSGGVPVNI--IGDD-TIIFYRGKGYVQPQVMSPIDTLSKKR 268

Query:   738 ALKRSVAMQRHEALSQHISDLENTIEQMKKEIGVSKDEEDGN 779
             A ++S   Q  E++   I+  E  +E   + + +  D  + N
Sbjct:   269 AYEKSKYEQSLESVRHFIAIAEKELELYYRHVALYDDPNNRN 310


>TAIR|locus:2094438 [details] [associations]
            symbol:LOH1 "LAG One Homologue 1" species:3702
            "Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0042761 "very
            long-chain fatty acid biosynthetic process" evidence=IGI]
            [GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI]
            InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
            GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
            EMBL:AB025639 GO:GO:0042761 Gene3D:3.30.110.60 SUPFAM:SSF75471
            GO:GO:0050291 KO:K01148 EMBL:AK176804 IPI:IPI00542084
            RefSeq:NP_189171.2 UniGene:At.37388 ProteinModelPortal:Q67XL4
            SMR:Q67XL4 PaxDb:Q67XL4 PRIDE:Q67XL4 EnsemblPlants:AT3G25440.1
            GeneID:822128 KEGG:ath:AT3G25440 TAIR:At3g25440 eggNOG:NOG254408
            HOGENOM:HOG000240887 InParanoid:Q67XL4 OMA:RRYIPRL PhylomeDB:Q67XL4
            ProtClustDB:CLSN2681576 Genevestigator:Q67XL4 Uniprot:Q67XL4
        Length = 444

 Score = 255 (94.8 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 83/298 (27%), Positives = 152/298 (51%)

Query:   511 NVASALAEREQCAKQIQDVEEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVS 570
             N+   +  +E   + + +V   +RS +  +TP+ ET G      +++   +  + G   +
Sbjct:    50 NIVCKVLHKESLTRPMWNVSF-LRSSSFHSTPARET-GD---DDISKSENSSSQDGDSCT 104

Query:   571 AEEREKMVEEASKA---KHARLVKRIEHKLAVSQAK---KLRA-----ERLLA---KIEA 616
               +R+K+  + +     K  R  K+ E +   S+ K   KLR      ERL+    K+E 
Sbjct:   105 KLKRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEP 164

Query:   617 SMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKL 676
             S   +   +D E +T EE   + ++GL+ K ++P+G RG++ GV+ NMHLHWK  + +++
Sbjct:   165 SE-SAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQV 223

Query:   677 ITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPIS--LRPRNLLT 734
             + K  T   V++ A  L   +GGI++ +    +G  +I YRGKNY +P +  + PR  L 
Sbjct:   224 VIKTFTPDEVKEIAVELARLTGGIVLDVH---EGNTIIMYRGKNYVQPPTEIMSPRITLP 280

Query:   735 KAKALKRSVAMQRHEALSQHISDLENTIEQMKKEIGVSKD----EEDGNIRCSGDLKQ 788
             + KAL +S       A+ ++I  LE  ++ ++ +    +D    + D N   S +LK+
Sbjct:   281 RKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKK 338


>TAIR|locus:2061604 [details] [associations]
            symbol:CAF1 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
            metabolic process" evidence=RCA] [GO:0009658 "chloroplast
            organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
            PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
            EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
            Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
            IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
            ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
            PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
            KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
            InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
            Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
        Length = 701

 Score = 158 (60.7 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
 Identities = 38/124 (30%), Positives = 65/124 (52%)

Query:   201 RAGGEKPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKI 260
             + G  +P    R    K   L E  +  EE+R L  + +    ++N+ + GLT +++  I
Sbjct:   219 KPGPFRPGVGPRYVYSKEEILGE-PLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNI 277

Query:   261 HDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKP 320
             HD W++  + ++K   V   DM    E +E + GG VI+R G V+ ++RG NY    ++P
Sbjct:   278 HDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNY-NHRTRP 336

Query:   321 Q-PL 323
             + PL
Sbjct:   337 RFPL 340

 Score = 76 (31.8 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
 Identities = 31/135 (22%), Positives = 63/135 (46%)

Query:   396 LLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILK 455
             L  P    Y    + +P G    LT  E T++RR  R L     LG+N  +  L   + +
Sbjct:   342 LWKPVAPVYPRLIQQVPEG----LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKE 397

Query:   456 LWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASA 515
              +E   + +I  + G++ ++ + +  +LK L    L+      I+++RG+++      S+
Sbjct:   398 AFEVCELVRIDCQ-GMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREW-----KSS 451

Query:   516 LAEREQCAKQIQDVE 530
             L   ++    ++D+E
Sbjct:   452 LTTPDKKGDILEDIE 466

 Score = 60 (26.2 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query:   628 ETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKL 676
             E +T +E    RR G  +     LG  GV+  +V+N+   ++  ELV++
Sbjct:   359 EGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRI 407

 Score = 48 (22.0 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query:    31 PFSSSSRKTPSFQLLKPFSSLRTNQNPRTDSQNQQFPKPRSPSTSAPWLNNWSRPKPPST 90
             PF S  R TPS    +     R+  +      N+   KPR P  S P L+  ++P+   +
Sbjct:    84 PFRS--RGTPSLPSARSIPGRRSKYSKPDSGPNRPKNKPRVPD-SPPQLD--AKPEVKLS 138

Query:    91 EN 92
             E+
Sbjct:   139 ED 140

 Score = 40 (19.1 bits), Expect = 2.0e-07, Sum P(4) = 2.0e-07
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query:   638 FRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVK-LITKQKTLAYVED 688
             FR++G ++K  +P  +   F+   E + L W+ RE    L T  K    +ED
Sbjct:   417 FRKIGAKLKDLVPCVLVS-FEN--EQI-LIWRGREWKSSLTTPDKKGDILED 464

 Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(4) = 2.0e-07
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query:   441 GRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSL 486
             GRN NH+      L LW+   VA +   R IQ     L  +E  ++
Sbjct:   327 GRNYNHRTRPRFPLMLWKP--VAPV-YPRLIQQVPEGLTRQEATNM 369

 Score = 37 (18.1 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
 Identities = 13/72 (18%), Positives = 30/72 (41%)

Query:   563 KRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSG 622
             + W   ++  +++  + E  +   A L +  E  ++ +Q++ +     L  +E    P G
Sbjct:   446 REWKSSLTTPDKKGDILEDIEVDTA-LPEDDEPSVSPNQSQTMTQNPPLDSMELQNDPDG 504

Query:   623 PDYDQETITDEE 634
              D    T+   E
Sbjct:   505 HDLSPSTVDSSE 516


>TAIR|locus:2126694 [details] [associations]
            symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            [GO:0000956 "nuclear-transcribed mRNA catabolic process"
            evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
            [GO:0048573 "photoperiodism, flowering" evidence=RCA]
            InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
            GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
            EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
            IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
            UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
            PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
            KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
            HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
            ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
            SUPFAM:SSF75471 Uniprot:Q8VYD9
        Length = 405

 Score = 140 (54.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 41/125 (32%), Positives = 68/125 (54%)

Query:   203 GGEKPAGETRRRRMKAPTL-AELT-IEDEELRRL-RRNGMYLRERINVPKAGLTQDVMRK 259
             G E P  E +RR+++     A LT  E + L  L +RN    + ++N+ + GLT +++  
Sbjct:   137 GVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKT--KRQVNLGRDGLTHNMLND 194

Query:   260 IHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSK 319
             +++ W+  E VR+K   V   DMK     +E +T G V+ +    +V+YRG NY  P  +
Sbjct:   195 VYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNY-DPKKR 253

Query:   320 PQ-PL 323
             P+ PL
Sbjct:   254 PKIPL 258

 Score = 77 (32.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 25/102 (24%), Positives = 50/102 (49%)

Query:   409 RLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVK 468
             RL+ T +   L+  E   +R+   ++P    L +N  +  L   +   +  S + +I   
Sbjct:   270 RLIKTTIDG-LSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCL 328

Query:   469 RGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPP 510
              G++  + K +  +L+ L    L+  +K  +V++RGKD+ PP
Sbjct:   329 -GLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKPP 369

 Score = 57 (25.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 24/94 (25%), Positives = 45/94 (47%)

Query:   632 DEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKL-ITKQKTLAYVEDTA 690
             DE +AM R+ GL + A   L   G +  +V  +   +   ELV++     +   Y +  A
Sbjct:   282 DETKAM-RKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGA 340

Query:   691 RLLEYESGGILIAIERVPKGFALIFYRGKNYRRP 724
             +L +     IL+  ++      ++ +RGK+Y+ P
Sbjct:   341 KLRDLVPC-ILVTFDKEQ----VVIWRGKDYKPP 369


>TAIR|locus:2160195 [details] [associations]
            symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
            GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
            ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
            EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
            UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
            EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
            TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
            PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
        Length = 358

 Score = 160 (61.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
 Identities = 39/106 (36%), Positives = 61/106 (57%)

Query:   217 KAPTLAELTIEDE--ELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKF 274
             +A  L E   EDE  EL    R+    R+ IN+ K G+T +++  IH+ W+K E VR+K 
Sbjct:   135 RARVLGETLTEDEVTELIERYRHSDCTRQ-INLGKGGVTHNMIDDIHNHWKKAEAVRIKC 193

Query:   275 HEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKP 320
               V   DM      +E ++GG +++R  +++V+YRG NY  P S+P
Sbjct:   194 LGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNY-DPKSRP 238

 Score = 51 (23.0 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query:   633 EERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKL 676
             EE    R  GL   A + L   GV+  VV  +   ++  E+V+L
Sbjct:   266 EETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEEIVRL 309


>TAIR|locus:2028100 [details] [associations]
            symbol:CAF2 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
            InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
            GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
            Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
            EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
            UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
            PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
            KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
            HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
            Genevestigator:Q9LDA9 Uniprot:Q9LDA9
        Length = 564

 Score = 138 (53.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 32/121 (26%), Positives = 60/121 (49%)

Query:   204 GEKPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDK 263
             G  P G   +  M    +    ++  E   L +  M+   ++N+ + G T +++  IH  
Sbjct:   181 GPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSH 240

Query:   264 WRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQ-P 322
             W++  + +++   V   DM     ++E +TGG +I R G V+ ++RG NY    ++PQ P
Sbjct:   241 WKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRGRNY-NYRTRPQYP 299

Query:   323 L 323
             L
Sbjct:   300 L 300

 Score = 66 (28.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 27/112 (24%), Positives = 50/112 (44%)

Query:   396 LLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILK 455
             L  P    Y    + +P G    LT  E  + R   +SL     L +N  +  L   +  
Sbjct:   302 LWKPAAPVYPKLIQEVPEG----LTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRD 357

Query:   456 LWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDF 507
              +E S + K+    G++ ++ K +  +LK L    LL  +   I+++RG+++
Sbjct:   358 AFELSSLVKVDCP-GLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREW 408

 Score = 54 (24.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query:   335 VSSTDGSTARSVDEKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVD 393
             +S+TDG+    VDEK        D      +E ++  SL D +GP        G LPVD
Sbjct:   503 LSNTDGAAEDYVDEKDRSEEYYSDIDDDFDDECSDDESL-DPVGP-------VGSLPVD 553

 Score = 52 (23.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query:   610 LLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWK 669
             +L K  A + P       E +T EE   FR  G  ++    L   GV+  +V+++   ++
Sbjct:   301 MLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFE 360

Query:   670 YRELVKL 676
                LVK+
Sbjct:   361 LSSLVKV 367


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      833       750   0.00090  121 3  11 22  0.43    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  12
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  361 KB (2178 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  77.62u 0.11s 77.73t   Elapsed:  00:00:04
  Total cpu time:  77.62u 0.11s 77.73t   Elapsed:  00:00:04
  Start:  Sat May 11 08:57:25 2013   End:  Sat May 11 08:57:29 2013

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