BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036294
(833 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 283/737 (38%), Positives = 397/737 (53%), Gaps = 91/737 (12%)
Query: 46 KPFSSLRTNQNPR--TDSQNQQFPKPRSPST------SAPWLNNWSRPKPPSTENANKLG 97
+ F SL TN + R SQ QF + R S +APW+ +P + K
Sbjct: 48 RAFPSLITNSSSRRAKSSQFDQFRENRGVSDAAIKVPTAPWMKGPLLLRPDEILDTKKRN 107
Query: 98 GRNQIDEKQTSPDSYPRYSDSDNKGRNAIERIVLRLRNLGLGSDDEEEGEEEEDDINGAA 157
+++EK + +S +G+ A+++IV + L SD EE ++ +
Sbjct: 108 KPRKVEEKTFKALNR---RESGVRGKKAMKKIVRNVEKLDEDSDSEETQMDDLSEFEYLG 164
Query: 158 TGEERLEDLLRREWVRPNTVLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRRMK 217
EE++E + +PWEREEE + RRMK
Sbjct: 165 RIEEKVES-----------------KDRFGGKMPWEREEERFIL------------RRMK 195
Query: 218 ---APTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKF 274
PT AEL +++ L RLRR +R+ +NV KAG+T+ V+ KI W+ +EL ++F
Sbjct: 196 KESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRF 255
Query: 275 HEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPH 334
L +M+ A EI+E +TGGLV+ +VVYRG GPS + D +L+
Sbjct: 256 DVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG----GPSYSSEGQDEISSSLY--- 308
Query: 335 VSSTDGSTARSVDEKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDA 394
E E + LLD LGPR+ +WW PVDA
Sbjct: 309 --------------------------------EREADRLLDGLGPRYMDWWMRRPFPVDA 336
Query: 395 DLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAIL 454
DLLP V+GY TP R P R++LT+ E+T LR +A+ LP HF LGRN QGLA AI+
Sbjct: 337 DLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIV 396
Query: 455 KLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVAS 514
KLWEK ++AKIA+K G NTNN+ MA+EL+ LTGG L+ RNK+ IVLYRGKDFL VA
Sbjct: 397 KLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKYLIVLYRGKDFLSDEVAD 456
Query: 515 ALAEREQCAKQIQDVEEKVRSKTLE----ATPSGETEGQAPAGTLAEFYEAQKRWGREVS 570
+ +RE+ + Q EE R +E T + + +GTL EF E Q+++G E+
Sbjct: 457 LVEDRERLLSRYQHFEETKRESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFG-EMD 515
Query: 571 AEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETI 630
E EA KA+ + +K EHKL++ ++K ++ L K+ + PS D D E +
Sbjct: 516 PRNLET---EAEKARLEKELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEIL 572
Query: 631 TDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTA 690
T+EER RR+GL+M + L LG RGVF GV+E +H HWK+RE+ K+IT QK + V TA
Sbjct: 573 TNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTA 632
Query: 691 RLLEYESGGILIAIERVPKGFALIFYRGKNYRRPIS-LRPRNLLTKAKALKRSVAMQRHE 749
+ LE ES G+LI+IE++ +G A++ YRGKNY+RP S L +NLLTK KAL+RSV MQR
Sbjct: 633 KALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLG 692
Query: 750 ALSQHISDLENTIEQMK 766
+L E IE +K
Sbjct: 693 SLKFFAYQRERAIEDLK 709
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust.
Identities = 252/592 (42%), Positives = 351/592 (59%), Gaps = 28/592 (4%)
Query: 184 EEDDSLLPWEREEEENLRAGGEKPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMYLRE 243
+E +PW +E L+ R ++ + PT AE +E ELRRLRR +
Sbjct: 134 KEKSRAVPWAAARDEGLKVALR------REKKPREPTRAETELETHELRRLRRLARGIGR 187
Query: 244 RINVPKAGLTQDVMRKIHDKWRK-DELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAG 302
KAG+T +V++++ +W +EL ++ E L M A EI+E +TGGLV+W G
Sbjct: 188 WARAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKG 247
Query: 303 SVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTDG---STARSVDEKSEVPVRILDH 359
+ VYRG+ Y + F+ +V D + +K E PV+
Sbjct: 248 DMHFVYRGSKYQQ--------NAKHSHTFLTNVHKDDAFQENDQSICGQKDEEPVK---- 295
Query: 360 SKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRL 419
T E E N LLD+LGPRF +WW LPVDADLLP V G KTP+RL P G+R L
Sbjct: 296 ---GTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTL 352
Query: 420 TNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLM 479
+ E+T LR+LAR LP HFALGRN QGLA AILKLWEKSL+AKIAVK GIQNTNN+ M
Sbjct: 353 ADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQM 412
Query: 480 AEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVEEKVRSKTLE 539
A LK LTGGT++ RNK +I+LYRGKDFLP VA + +RE Q EE+ R K ++
Sbjct: 413 AWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVD 472
Query: 540 ATP-SGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVE-EASKAKHARLVKRIEHKL 597
+ GE ++ GT E+ ++ E + E M+E EA K + + +K E KL
Sbjct: 473 SLQMVGELSEESSLGTFREYQGFHAKFVHE-NTENSNTMIELEAEKYRLEKELKDHEWKL 531
Query: 598 AVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVF 657
+V K R+ + LAK+ +S PS D+E +T+EE+ MFRR+G +M + LG RG+F
Sbjct: 532 SVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIF 591
Query: 658 DGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYR 717
DGV+E +H HWK++E+VK+ITKQ + A LLE E+GGILIA+E++ A+I YR
Sbjct: 592 DGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYR 651
Query: 718 GKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEI 769
GKNYRRP NLLTK +AL+RS+ +QR ++ + + + +I ++K+++
Sbjct: 652 GKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKL 703
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 244/567 (43%), Positives = 344/567 (60%), Gaps = 11/567 (1%)
Query: 212 RRRRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRK-DELV 270
R ++ + PT AE +E EL RLRR KAG+T +V+ ++ +W K EL
Sbjct: 141 REKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQWAKGQELA 200
Query: 271 RLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTL 330
++ E L M A EI+E +TGGLV+W G + VYRG++Y + + + + L
Sbjct: 201 GVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSYLENAKRHRDFVNYNEEL 260
Query: 331 FVPHVSSTDGSTAR--SVDEK--SEVPVRILDHSKPM--TEEEAECNSLLDSLGPRFQEW 384
P S+ S + S DE ++ KP+ T E E N LLDSLGPRF +W
Sbjct: 261 -SPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGPRFIDW 319
Query: 385 WGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNR 444
W LPVDADLLP V +KTPFR P G+R L + E+T LR+ AR LP HF LGRN
Sbjct: 320 WWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRNT 379
Query: 445 NHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRG 504
QGLA AILKLWEKSL+AK+AVK GIQNTN++ MA LK LTGGT++ RNK YI++YRG
Sbjct: 380 KLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRG 439
Query: 505 KDFLPPNVASALAEREQCAKQIQDVEEKVRSKTLEATP--SGETEGQAPAGTLAEFYEAQ 562
KDFLP VA ++ ERE Q EE+ R K ++ G + ++ GT E+ +
Sbjct: 440 KDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFREYQDFH 499
Query: 563 KRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSG 622
R + E ++ EA K + + +K E +L++ K R+ ++LAK+ +S PS
Sbjct: 500 DSHARRTT-ENNFRIQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSK 558
Query: 623 PDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKT 682
D D+E +T+EER +FR++GL+M + LG RGVF+GV+E +H HWK++E+VK+ITKQ
Sbjct: 559 KDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQ 618
Query: 683 LAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRS 742
+ + T+ +LE E+GG LIAIER A+I YRGKNYRRP P NLLTK +AL+RS
Sbjct: 619 ASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRS 678
Query: 743 VAMQRHEALSQHISDLENTIEQMKKEI 769
+ +QR ++ + + +I+++K+E+
Sbjct: 679 IEVQRRGSMKYFAQERKKSIDELKREL 705
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 105/185 (56%), Gaps = 6/185 (3%)
Query: 592 RIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPL 651
+I +KL ++ K+ R + K+E S + +D E +T EE + ++GL+ K ++P+
Sbjct: 140 KILNKLRKARKKEERLMETMKKLEPSE-SAETTHDPEILTPEEHFYYLKMGLKCKNYVPV 198
Query: 652 GIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGF 711
G RG++ GV+ NMHLHWK + ++++ K T V++ A L +GGI++ + +G
Sbjct: 199 GRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVH---EGN 255
Query: 712 ALIFYRGKNYRRPIS--LRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEI 769
+I YRGKNY +P + + PR L + KAL +S A+ ++I LE ++ ++ +
Sbjct: 256 TIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQA 315
Query: 770 GVSKD 774
+D
Sbjct: 316 ETKRD 320
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 238 GMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLV 297
G+ + + V + G+ Q V+ +H W+K + +++ ++K + R TGG+V
Sbjct: 189 GLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIV 248
Query: 298 I-WRAGSVMVVYRGNNYAGP 316
+ G+ +++YRG NY P
Sbjct: 249 LDVHEGNTIIMYRGKNYVQP 268
Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 430 LARSLPC--HFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLT 487
L L C + +GR +QG+ + + W+K ++ +K + K +A EL LT
Sbjct: 186 LKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPD-EVKEIAVELARLT 244
Query: 488 GGTLLQRNK-FYIVLYRGKDFLPP 510
GG +L ++ I++YRGK+++ P
Sbjct: 245 GGIVLDVHEGNTIIMYRGKNYVQP 268
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 229 EELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEI 288
EE+R L + + ++N+ + GLT +++ IHD W++ + ++K V DM E
Sbjct: 246 EEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQ 305
Query: 289 VERRTGGLVIWRAGSVMVVYRGNNY 313
+E + GG VI+R G V+ ++RG NY
Sbjct: 306 LEEKIGGKVIYRRGGVLFLFRGRNY 330
Score = 39.7 bits (91), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 628 ETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVE 687
E +T EE L+ L +G G+ ++ N+H WK R + K+ K ++
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 688 DTARLLEYESGGILIAIERVPKGFALIFYRGKNY 721
+ LE + GG +I +G L +RG+NY
Sbjct: 301 NVCEQLEEKIGGKVIYR----RGGVLFLFRGRNY 330
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 419 LTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKL 478
LT E+ +L +GR+ + I LW++ V KI K G+ +
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCK-GVCTVDMDN 301
Query: 479 MAEELKSLTGGTLLQRNKFYIVLYRGKDF 507
+ E+L+ GG ++ R + L+RG+++
Sbjct: 302 VCEQLEEKIGGKVIYRRGGVLFLFRGRNY 330
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 419 LTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKL 478
LT E T++RR R L LG+N + L + + +E + +I + G++ ++ +
Sbjct: 361 LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQ-GMKGSDFRK 419
Query: 479 MAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVE 530
+ +LK L L+ I+++RG+++ S+L ++ ++D+E
Sbjct: 420 IGAKLKDLVPCVLVSFENEQILIWRGREW-----KSSLTTPDKKGDILEDIE 466
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 242 RERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRA 301
+++IN+ + GLT +++ IH+ W+ DE VR+K V DM+ +E +TGGL+I R
Sbjct: 175 KKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRH 234
Query: 302 GSVMVVYRGNNYAGPSSKP 320
G +++YRG +Y P +P
Sbjct: 235 GGQLILYRGRHY-NPKKRP 252
Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 628 ETITDEERAMF--RRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAY 685
E +T ERA + R K + LG G+ ++ ++H HWK E V++
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 686 VEDTARLLEYESGGILIAIERVPKGFALIFYRGKNY---RRPI 725
+++ LE ++GG++I G LI YRG++Y +RP+
Sbjct: 215 MQNVCHQLEDKTGGLIIHRH----GGQLILYRGRHYNPKKRPV 253
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 206 KPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWR 265
KPA R +K T+ LT+E E + +R+ G+Y+ + K G ++ + D +
Sbjct: 260 KPAEPVYPRLIKT-TIEGLTVE--ETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFL 316
Query: 266 KDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAG 315
DELVR+ + +D + + +++ ++V+RG +Y G
Sbjct: 317 TDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKDYNG 366
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 230 ELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIV 289
E+R L + + ++N+ + GLT +++ IH WR+ E+ +++ V DMK +
Sbjct: 234 EVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHL 293
Query: 290 ERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQ 321
E ++GG VI R G V+ +YRG NY P ++P+
Sbjct: 294 EEKSGGKVIHRVGGVVFLYRGRNY-NPRTRPR 324
Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 649 LPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVP 708
L +G G+ ++E +H HW+ +E+ K+ + +++ LE +SGG + I RV
Sbjct: 249 LNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRV- 305
Query: 709 KGFALIFYRGKNY 721
G + YRG+NY
Sbjct: 306 -GGVVFLYRGRNY 317
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 409 RLLPTGMRSR-------LTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSL 461
R+ P RSR LT AE+ DL + S +GR+ + I W +
Sbjct: 213 RVSPGDGRSREEVLGEPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQE 272
Query: 462 VAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLP 509
+ K+ RG+ + K + L+ +GG ++ R + LYRG+++ P
Sbjct: 273 ICKVRC-RGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNYNP 319
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 217 KAPTLAELTIEDE--ELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKF 274
+A L E EDE EL R+ R+ IN+ K G+T +++ IH+ W+K E VR+K
Sbjct: 135 RARVLGETLTEDEVTELIERYRHSDCTRQ-INLGKGGVTHNMIDDIHNHWKKAEAVRIKC 193
Query: 275 HEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKP 320
V DM +E ++GG +++R +++V+YRG NY P S+P
Sbjct: 194 LGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNY-DPKSRP 238
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 651 LGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKG 710
LG GV +++++H HWK E V++ +++ LE +SGG ++
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVY----RNI 221
Query: 711 FALIFYRGKNY---RRPI 725
L+ YRG+NY RPI
Sbjct: 222 NILVLYRGRNYDPKSRPI 239
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 419 LTNAEMTDLRRLARSLPC--HFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNN 476
LT E+T+L R C LG+ + I W+K+ +I G+ +
Sbjct: 143 LTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKC-LGVPTLDM 201
Query: 477 KLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLP 509
+ L+ +GG ++ RN +VLYRG+++ P
Sbjct: 202 DNICFHLEEKSGGKIVYRNINILVLYRGRNYDP 234
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 230 ELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIV 289
E+R L + + ++N+ + GLT +++ IH WR+ E+ +++ V DMK +
Sbjct: 238 EVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHL 297
Query: 290 ERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQ 321
E ++GG VI R G V+ +YRG +Y P ++P+
Sbjct: 298 EEKSGGKVIHRVGGVVFLYRGRHY-DPKTRPR 328
Score = 40.0 bits (92), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 649 LPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVP 708
L +G G+ ++E +H HW+ +E+ K+ + +++ LE +SGG + I RV
Sbjct: 253 LNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRV- 309
Query: 709 KGFALIFYRGKNY 721
G + YRG++Y
Sbjct: 310 -GGVVFLYRGRHY 321
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 244 RINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGS 303
+IN+ K G+T +++ IH+ W++ E VR+K V DM +E +TGG VI+R +
Sbjct: 165 QINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNIN 224
Query: 304 VMVVYRGNNYAGPSSKPQ 321
++++YRG NY P +PQ
Sbjct: 225 ILILYRGRNY-DPKQRPQ 241
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 651 LGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKG 710
LG GV +++++H HWK E V++ +++ LE ++GG +I
Sbjct: 168 LGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI----YRNI 223
Query: 711 FALIFYRGKNY 721
LI YRG+NY
Sbjct: 224 NILILYRGRNY 234
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%)
Query: 226 IEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTA 285
+ EE+ L + + + ++N+ + GLT +++ IH W++ + ++K V DM
Sbjct: 185 LTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNI 244
Query: 286 HEIVERRTGGLVIWRAGSVMVVYRGNNY 313
+E + GG VI R G V+ ++RG NY
Sbjct: 245 CHQLEEKVGGKVIHRQGGVIFLFRGRNY 272
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 624 DYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTL 683
D E +T EE + + L+ K L +G G+ ++EN+H HWK + + K+ K
Sbjct: 179 DILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCT 238
Query: 684 AYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNY 721
+++ LE + GG +I + G + +RG+NY
Sbjct: 239 IDMDNICHQLEEKVGGKVIHRQ----GGVIFLFRGRNY 272
Score = 36.6 bits (83), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 411 LPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRG 470
L T + LT E T++R LP LG+N + L + + +E + ++ G
Sbjct: 295 LVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCS-G 353
Query: 471 IQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDF---LPP 510
+ ++ + + +LK L LL +I+++RG D+ LPP
Sbjct: 354 LNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPP 396
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 226 IEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTA 285
+ EE+ L + + + ++N+ + GLT +++ IH W++ + ++K V DM
Sbjct: 185 LTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNV 244
Query: 286 HEIVERRTGGLVIWRAGSVMVVYRGNNY 313
+ +E + GG VI G V+ ++RG NY
Sbjct: 245 CQQLEEKVGGKVIHHQGGVIFLFRGRNY 272
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 628 ETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVE 687
E +T EE + L+ K L +G G+ ++EN+H HWK + + K+ K ++
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 688 DTARLLEYESGGILIAIERVPKGFALIFYRGKNYR---RPI 725
+ + LE + GG +I + G + +RG+NY RPI
Sbjct: 243 NVCQQLEEKVGGKVIHHQ----GGVIFLFRGRNYNYRTRPI 279
Score = 40.4 bits (93), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 399 PKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWE 458
P Y + +P G LT E D+R+ R LP LG+N + L + + +E
Sbjct: 287 PAAPVYPRLVKKIPDG----LTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFE 342
Query: 459 KSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDF---LPP 510
+ ++ G+ ++ + + +LK L TLL +I+++RG D+ LPP
Sbjct: 343 ACDLVRVDCS-GLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLPP 396
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 234 LRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRT 293
L + M+ ++N+ + G T +++ IH W++ + +++ V DM ++E +T
Sbjct: 211 LIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKT 270
Query: 294 GGLVIWRAGSVMVVYRGNNY 313
GG +I R G V+ ++RG NY
Sbjct: 271 GGEIIHRVGGVVYLFRGRNY 290
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 651 LGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKG 710
LG G ++E +H HWK R + K+ K + + R+LE ++GG + I RV G
Sbjct: 224 LGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEI--IHRV--G 279
Query: 711 FALIFYRGKNY 721
+ +RG+NY
Sbjct: 280 GVVYLFRGRNY 290
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 203 GGEKPAGETRRRRMKAPTLAELTIEDEE---LRRLRRNGMYLRERINVPKAGLTQDVMRK 259
G E P E +RR+++ E E + +RN + ++N+ + GLT +++
Sbjct: 137 GVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKT--KRQVNLGRDGLTHNMLND 194
Query: 260 IHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSK 319
+++ W+ E VR+K V DMK +E +T G V+ + +V+YRG NY P +
Sbjct: 195 VYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNY-DPKKR 253
Query: 320 PQ-PLDGDGDTLFVPH 334
P+ PL L+ PH
Sbjct: 254 PKIPL-----MLWKPH 264
>sp|Q88DW6|ACSA2_PSEPK Acetyl-coenzyme A synthetase 2 OS=Pseudomonas putida (strain
KT2440) GN=acsA2 PE=3 SV=1
Length = 644
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 276 EVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHV 335
+ LA+ + +V RRTGG V W G + + AG P+P++ + D LF+ +
Sbjct: 202 KALASCPAVSSVLVVRRTGGDVAWTEGRDLWYHEATKDAGDDCPPEPMEAE-DPLFILYT 260
Query: 336 SSTDG 340
S + G
Sbjct: 261 SGSTG 265
>sp|Q3TTJ4|CH048_MOUSE Uncharacterized protein C8orf48 homolog OS=Mus musculus PE=2 SV=1
Length = 293
Score = 33.5 bits (75), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 770 GVSKDE--EDGNIRCSGDLKQFDHVSVLPQNEDDDYVSDEDFDSEADEDSELSSFESDDN 827
G DE G+I SG+L+ + H S P S E E DE SELS + D+N
Sbjct: 35 GSCADEVLSSGSISFSGELQSYSHTSESPVETKTPTTSSE----EQDEQSELSLLQKDEN 90
Query: 828 DLSK 831
LS+
Sbjct: 91 KLSE 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 322,063,550
Number of Sequences: 539616
Number of extensions: 14860333
Number of successful extensions: 65212
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 447
Number of HSP's that attempted gapping in prelim test: 59549
Number of HSP's gapped (non-prelim): 4886
length of query: 833
length of database: 191,569,459
effective HSP length: 126
effective length of query: 707
effective length of database: 123,577,843
effective search space: 87369535001
effective search space used: 87369535001
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)