Query 036294
Match_columns 833
No_of_seqs 329 out of 1021
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 19:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 99.9 2.3E-27 7.9E-32 214.9 12.0 87 225-311 2-88 (98)
2 1rq8_A Conserved hypothetical 99.9 3.1E-27 1.1E-31 216.1 12.8 88 225-312 1-88 (104)
3 1rq8_A Conserved hypothetical 99.9 9.4E-27 3.2E-31 213.0 13.7 96 629-729 1-96 (104)
4 1jo0_A Hypothetical protein HI 99.9 3E-26 1E-30 207.6 13.4 95 629-729 2-96 (98)
5 3ka5_A Ribosome-associated pro 53.9 26 0.00091 29.8 6.0 49 268-316 1-52 (65)
6 3k2t_A LMO2511 protein; lister 35.7 30 0.001 28.7 3.5 49 268-316 1-52 (57)
7 3lyv_A Ribosome-associated fac 31.8 32 0.0011 29.4 3.2 49 268-316 2-53 (66)
8 4fp9_B Mterf domain-containing 21.5 31 0.0011 37.1 1.5 16 749-764 265-280 (335)
9 3ka5_A Ribosome-associated pro 21.4 2.3E+02 0.008 24.1 6.5 49 672-721 1-49 (65)
10 2li5_B Ubiquitin-like modifier 18.9 36 0.0012 25.3 0.9 14 806-819 20-33 (34)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.94 E-value=2.3e-27 Score=214.86 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHcccCCCceEecCCCCCCHHHHHHHHHHHHhCCeEEEEecCCchHhHHHHHHHHHHHhCCeEEEEECcE
Q 036294 225 TIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSV 304 (833)
Q Consensus 225 tLt~kErr~LR~lAh~LkpvV~IGK~GVTd~VVeeIh~awk~hELVKVKvl~~~~~dmk~~~e~LEekTGgeVVqrIG~v 304 (833)
+||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|+++|.++++++|++|+++|||++||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccC
Q 036294 305 MVVYRGN 311 (833)
Q Consensus 305 iVLYRg~ 311 (833)
+||||++
T Consensus 82 ~vLyR~~ 88 (98)
T 1jo0_A 82 LVLYRPS 88 (98)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999987
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.94 E-value=3.1e-27 Score=216.13 Aligned_cols=88 Identities=20% Similarity=0.365 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHcccCCCceEecCCCCCCHHHHHHHHHHHHhCCeEEEEecCCchHhHHHHHHHHHHHhCCeEEEEECcE
Q 036294 225 TIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSV 304 (833)
Q Consensus 225 tLt~kErr~LR~lAh~LkpvV~IGK~GVTd~VVeeIh~awk~hELVKVKvl~~~~~dmk~~~e~LEekTGgeVVqrIG~v 304 (833)
|||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||||+++|.++++++++.|+++|||+|||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCC
Q 036294 305 MVVYRGNN 312 (833)
Q Consensus 305 iVLYRg~n 312 (833)
+||||++.
T Consensus 81 ~VLYR~~~ 88 (104)
T 1rq8_A 81 IVIYRESK 88 (104)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999985
No 3
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.94 E-value=9.4e-27 Score=212.99 Aligned_cols=96 Identities=17% Similarity=0.322 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHcccCCcceeeccCCCCCHHHHHHHHHHHhhCceEEEEecCCCHHHHHHHHHHHHHHhCCEEEEEeecC
Q 036294 629 TITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVP 708 (833)
Q Consensus 629 ~LT~eERk~LRklGhkLKPvV~IGKrGVtdgVIeeIh~awk~hELVKVkv~~~~~ed~keiA~~Le~~SGg~LVqVI~~~ 708 (833)
|||++||+|||++||+|+|+|+||++|||++||++|+++|++||||||+|.+++.++++++|++||+.+||++||+|
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~I--- 77 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVI--- 77 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEE---
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEE---
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCCCCCCCC
Q 036294 709 KGFALIFYRGKNYRRPISLRP 729 (833)
Q Consensus 709 kG~tiILYRgkNY~rP~~~~P 729 (833)
|+++||||++. ..|.+..|
T Consensus 78 -G~~~VLYR~~~-~~~~i~~~ 96 (104)
T 1rq8_A 78 -GSMIVIYRESK-ENKEIELP 96 (104)
T ss_dssp -TTEEEEEECCC-SCCSCCCC
T ss_pred -CCEEEEEeCCC-CCCceecc
Confidence 99999999876 66676666
No 4
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.94 E-value=3e-26 Score=207.59 Aligned_cols=95 Identities=16% Similarity=0.261 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHcccCCcceeeccCCCCCHHHHHHHHHHHhhCceEEEEecCCCHHHHHHHHHHHHHHhCCEEEEEeecC
Q 036294 629 TITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVP 708 (833)
Q Consensus 629 ~LT~eERk~LRklGhkLKPvV~IGKrGVtdgVIeeIh~awk~hELVKVkv~~~~~ed~keiA~~Le~~SGg~LVqVI~~~ 708 (833)
.||++||+|||++||+|+|+|+||++|||++|+++|++||++||||||+|.+++.++++++|+.||+.+||++||+|
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~I--- 78 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTI--- 78 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEE---
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEE---
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCCCCCCCC
Q 036294 709 KGFALIFYRGKNYRRPISLRP 729 (833)
Q Consensus 709 kG~tiILYRgkNY~rP~~~~P 729 (833)
|+++||||++.. |.+..|
T Consensus 79 -G~~~vLyR~~~~--~~i~lp 96 (98)
T 1jo0_A 79 -GHILVLYRPSEE--AKIQLP 96 (98)
T ss_dssp -TTEEEEECCCSS--CCBCCC
T ss_pred -CCEEEEEccCCC--CCcCCC
Confidence 999999998743 555445
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=53.88 E-value=26 Score=29.85 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=41.7
Q ss_pred CeEEEEecCCchHhHHHHHHHHHHHhCCeEEEEE---CcEEEEeccCCCCCC
Q 036294 268 ELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRA---GSVMVVYRGNNYAGP 316 (833)
Q Consensus 268 ELVKVKvl~~~~~dmk~~~e~LEekTGgeVVqrI---G~viVLYRg~nY~~p 316 (833)
++|+.|-....+.+.++|+.+|+-.-.--+|.+- |.+-|+||.++.+|-
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yG 52 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYG 52 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEE
Confidence 5789999998999999999999987666777765 889999999888765
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=35.70 E-value=30 Score=28.70 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=36.2
Q ss_pred CeEEEEecCCchHhHHHHHHHHHHHhCCeEEEEE---CcEEEEeccCCCCCC
Q 036294 268 ELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRA---GSVMVVYRGNNYAGP 316 (833)
Q Consensus 268 ELVKVKvl~~~~~dmk~~~e~LEekTGgeVVqrI---G~viVLYRg~nY~~p 316 (833)
++|+.|-....+.+.++|+.+|+-.-.--+|.+- |.+-|+||.++.+|-
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~yG 52 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKYG 52 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCEE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence 4567777777788899999999987666667654 889999998877653
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=31.83 E-value=32 Score=29.39 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=39.3
Q ss_pred CeEEEEecCCchHhHHHHHHHHHHHhCCeEEEEE---CcEEEEeccCCCCCC
Q 036294 268 ELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRA---GSVMVVYRGNNYAGP 316 (833)
Q Consensus 268 ELVKVKvl~~~~~dmk~~~e~LEekTGgeVVqrI---G~viVLYRg~nY~~p 316 (833)
++|+.|-....+.+.++|+.+|+-.-.--+|.+- |.+-|+||.++.+|-
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yG 53 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLG 53 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEE
Confidence 5677787788888999999999976555666655 889999999888765
No 8
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=21.55 E-value=31 Score=37.11 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 036294 749 EALSQHISDLENTIEQ 764 (833)
Q Consensus 749 esl~~~i~~lek~i~~ 764 (833)
+--..|..-+++++++
T Consensus 265 eey~~F~k~~~~e~~~ 280 (335)
T 4fp9_B 265 EEFQVFKKLLAREEEE 280 (335)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhc
Confidence 3334444455555543
No 9
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=21.41 E-value=2.3e+02 Score=24.08 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=35.4
Q ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhCCEEEEEeecCCCcEEEEEecCCC
Q 036294 672 ELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNY 721 (833)
Q Consensus 672 ELVKVkv~~~~~ed~keiA~~Le~~SGg~LVqVI~~~kG~tiILYRgkNY 721 (833)
++|+.+...-.+..+.+++.+++-. |-.+.=...-.-|.+-|+||.++.
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~-gh~F~vF~n~etg~~nVVYRR~dG 49 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELL-GHNFFVFQNGDSNEVNVVYKRKDG 49 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHH-TCSEEEEEETTTTEEEEEEECTTS
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhC-CCcEEEEEeCCCCCEEEEEEeCCC
Confidence 4677777777777888888888765 444444444556999999998754
No 10
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=18.87 E-value=36 Score=25.26 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=10.4
Q ss_pred cccCCCcccccccc
Q 036294 806 DEDFDSEADEDSEL 819 (833)
Q Consensus 806 ~~~~~~~~~~~~~~ 819 (833)
.+-++|++||.+++
T Consensus 20 ndvfeweddesdei 33 (34)
T 2li5_B 20 NDVFEWEDDESDEI 33 (34)
T ss_dssp GGGCCSSCTTSGGG
T ss_pred Cccccccccccccc
Confidence 34578999988775
Done!