Query 036295
Match_columns 106
No_of_seqs 110 out of 802
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:16:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1397 Ca2+/H+ antiporter VCX 99.9 1.5E-26 3.3E-31 184.6 7.4 97 1-97 152-264 (441)
2 COG0387 ChaA Ca2+/H+ antiporte 99.9 7.6E-23 1.6E-27 162.5 9.7 96 1-100 92-198 (368)
3 TIGR00378 cax calcium/proton e 99.8 7.5E-20 1.6E-24 144.5 10.4 97 1-98 75-181 (349)
4 PRK10599 calcium/sodium:proton 99.7 4E-17 8.7E-22 130.3 8.0 87 4-97 101-198 (366)
5 TIGR00846 caca2 calcium/proton 99.7 3.1E-16 6.6E-21 124.8 10.9 94 1-97 93-197 (365)
6 PRK10734 putative calcium/sodi 98.3 2.9E-06 6.3E-11 66.9 7.7 84 1-96 64-151 (325)
7 TIGR00367 K+-dependent Na+/Ca+ 98.2 4.8E-06 1E-10 64.9 7.6 80 1-93 63-147 (307)
8 PF01699 Na_Ca_ex: Sodium/calc 97.5 0.0012 2.5E-08 44.6 8.8 78 1-88 52-140 (140)
9 COG0530 ECM27 Ca2+/Na+ antipor 97.1 0.002 4.3E-08 51.0 6.7 84 2-98 72-160 (320)
10 TIGR00927 2A1904 K+-dependent 93.6 0.15 3.1E-06 46.2 5.2 74 4-90 524-604 (1096)
11 TIGR00846 caca2 calcium/proton 93.4 0.28 6.1E-06 39.3 6.3 73 1-86 282-362 (365)
12 PRK10734 putative calcium/sodi 92.2 1.2 2.7E-05 35.1 8.4 80 1-90 235-318 (325)
13 TIGR00367 K+-dependent Na+/Ca+ 89.9 2.2 4.7E-05 33.2 7.6 72 1-84 231-307 (307)
14 TIGR00927 2A1904 K+-dependent 86.4 0.32 6.9E-06 44.1 1.1 87 1-97 994-1091(1096)
15 COG0530 ECM27 Ca2+/Na+ antipor 74.1 9.9 0.00021 30.1 5.6 78 1-88 236-317 (320)
16 PLN03151 cation/calcium exchan 71.2 20 0.00043 31.3 7.1 72 4-88 208-287 (650)
17 COG5120 GOT1 Membrane protein 68.4 7.9 0.00017 26.9 3.3 20 14-33 35-54 (129)
18 PLN03151 cation/calcium exchan 66.3 24 0.00052 30.8 6.6 75 4-91 550-639 (650)
19 TIGR00378 cax calcium/proton e 64.7 35 0.00075 27.1 6.9 32 1-32 266-297 (349)
20 KOG1307 K+-dependent Ca2+/Na+ 61.7 26 0.00056 30.0 5.8 67 8-87 128-201 (588)
21 PF09125 COX2-transmemb: Cytoc 56.7 18 0.00038 20.2 2.8 21 72-92 18-38 (38)
22 PF11286 DUF3087: Protein of u 53.0 43 0.00094 24.4 5.1 54 41-97 25-78 (165)
23 COG4657 RnfA Predicted NADH:ub 49.8 57 0.0012 24.2 5.3 42 10-51 8-53 (193)
24 TIGR01148 mtrC N5-methyltetrah 49.4 1.3E+02 0.0028 23.7 8.4 52 18-71 144-206 (265)
25 KOG1743 Ferric reductase-like 47.9 10 0.00022 26.8 1.1 19 15-33 36-54 (137)
26 PRK10692 hypothetical protein; 47.8 41 0.00088 22.3 3.9 21 13-33 7-27 (92)
27 TIGR00847 ccoS cytochrome oxid 46.9 39 0.00085 19.9 3.4 23 69-91 6-28 (51)
28 PF04178 Got1: Got1/Sft2-like 44.1 97 0.0021 20.8 8.3 20 14-33 31-50 (118)
29 TIGR00845 caca sodium/calcium 41.2 2E+02 0.0043 26.5 8.3 30 4-33 819-848 (928)
30 PF10762 DUF2583: Protein of u 40.4 27 0.00058 23.0 2.1 21 13-33 7-27 (89)
31 TIGR00985 3a0801s04tom mitocho 39.7 41 0.00088 24.1 3.2 32 65-96 7-38 (148)
32 COG4270 Predicted membrane pro 33.9 51 0.0011 23.0 2.8 14 20-33 11-24 (131)
33 PF10961 DUF2763: Protein of u 33.3 63 0.0014 21.1 3.1 30 65-94 14-43 (91)
34 KOG2887 Membrane protein invol 32.9 2E+02 0.0044 21.2 8.6 39 14-52 82-128 (175)
35 PF09930 DUF2162: Predicted tr 31.0 2.4E+02 0.0051 21.4 7.0 13 45-57 177-189 (224)
36 PRK01030 tetrahydromethanopter 30.7 2.7E+02 0.0058 21.9 8.0 50 18-69 138-198 (264)
37 KOG2399 K+-dependent Na+:Ca2+ 28.6 1.6E+02 0.0034 25.7 5.5 80 1-89 508-599 (605)
38 PF02468 PsbN: Photosystem II 27.9 84 0.0018 18.0 2.6 36 65-100 5-42 (43)
39 COG5521 Predicted integral mem 27.4 3.1E+02 0.0067 21.6 9.0 50 39-93 219-268 (275)
40 PF10883 DUF2681: Protein of u 25.0 1.2E+02 0.0025 19.9 3.2 19 73-91 9-27 (87)
41 PF06024 DUF912: Nucleopolyhed 24.9 37 0.0008 22.4 0.9 27 71-97 69-95 (101)
42 PF11446 DUF2897: Protein of u 24.6 97 0.0021 18.5 2.6 12 9-20 11-22 (55)
43 PF01708 Gemini_mov: Geminivir 23.9 91 0.002 20.6 2.6 17 71-87 42-58 (91)
44 PRK14750 kdpF potassium-transp 23.9 1.2E+02 0.0027 15.8 3.2 20 70-89 4-23 (29)
45 PF02038 ATP1G1_PLM_MAT8: ATP1 23.4 1.3E+02 0.0028 17.7 2.9 21 10-30 16-36 (50)
46 PF03988 DUF347: Repeat of Unk 22.9 1E+02 0.0023 17.9 2.5 23 72-94 31-53 (55)
47 PF04211 MtrC: Tetrahydrometha 22.7 3.8E+02 0.0083 21.0 7.9 16 18-33 145-161 (262)
48 PF13572 DUF4134: Domain of un 22.5 1.9E+02 0.0042 19.1 4.0 11 23-33 52-62 (98)
49 PF07214 DUF1418: Protein of u 20.6 2.4E+02 0.0053 18.8 4.1 16 41-56 49-64 (96)
No 1
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.5e-26 Score=184.57 Aligned_cols=97 Identities=55% Similarity=0.767 Sum_probs=87.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh---------HHHHHHH-HHHHHHHHHHHHHHHhhccCcC----Chhh
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV---------ASVNSGL-LMAVMGLLFPAVLHATHTELHF----GKSE 66 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~---------a~~~s~l-~la~i~lilP~~~~~~~~~~~~----~~~~ 66 (106)
|++++||.|++||||+|+|||+|+|++.||+++ |+++++| .+|++++.+|++++++.++... ++++
T Consensus 152 g~~riVq~SlLGSILsnlLLvlG~s~~~Ggi~rk~Q~Fn~~~A~v~s~lLl~a~l~~l~P~~l~~~~~~~~~~~~~~~~~ 231 (441)
T KOG1397|consen 152 GKVRIVQGSLLGSILSNLLLVLGLSLFCGGIRRKDQRFNIKSAGVNSALLLLAVLGILLPTVLHYTYGGEVHDCSSGGAI 231 (441)
T ss_pred CceEEEehhhHHHHHHHHHHHhhHHHhhcccccceeecccchhhHHHHHHHHHHHHHHHHHHHHHhcCccccccCCccce
Confidence 789999999999999999999999999999998 6789999 9999999999999999874322 3468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc--cccc
Q 036295 67 LALSRFSSYIMLVAYAAYLYFQLKSQR--QLRD 97 (106)
Q Consensus 67 ~~lS~~~avvll~~Y~~~L~fql~TH~--~~f~ 97 (106)
+.+||++|+++++.|++|||||+|||+ ..|+
T Consensus 232 l~lSr~~SivmliaYi~~L~FqL~t~~h~~~~~ 264 (441)
T KOG1397|consen 232 LPLSRGCSIVMLIAYIAYLWFQLKTARHIWQFP 264 (441)
T ss_pred eeehhccHHHHHHHHHHHHHHhhhcccccCCCC
Confidence 999999999999999999999999955 5554
No 2
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.89 E-value=7.6e-23 Score=162.52 Aligned_cols=96 Identities=34% Similarity=0.517 Sum_probs=83.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh---------HHHHHHH--HHHHHHHHHHHHHHHhhccCcCChhhHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV---------ASVNSGL--LMAVMGLLFPAVLHATHTELHFGKSELAL 69 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~---------a~~~s~l--~la~i~lilP~~~~~~~~~~~~~~~~~~l 69 (106)
|+..+||+|+.|||++|+++++|+|++.||+|| +++++.+ +.+++++++|+++..+. ++...+.+
T Consensus 92 G~~~lvr~Si~gsIm~~~llv~GlslllGglr~~~Q~fN~~~a~~~~~~L~~~~~ialv~P~~~~~~~----~~~~~~~~ 167 (368)
T COG0387 92 GSPTLVRDSLYGSIMINLLLVVGLSLLLGGLRHKTQPFNPHGAGTYLALLFTAATIALVLPTFFPYTG----GGNFSLGQ 167 (368)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHcchhhceeecchhhHHHHHHHHHHHHHHHhhhhhhhcccC----CCcchHhH
Confidence 567899999999999999999999999999999 4566655 55699999999998764 22344999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccc
Q 036295 70 SRFSSYIMLVAYAAYLYFQLKSQRQLRDQVN 100 (106)
Q Consensus 70 S~~~avvll~~Y~~~L~fql~TH~~~f~~~~ 100 (106)
|+++|++++++|+++|+||+|||+++|.+++
T Consensus 168 s~~~avv~i~~Y~lfL~fql~tH~~~f~~~~ 198 (368)
T COG0387 168 SLFVAVVLIALYGLFLFFQLKTHASLFWQVH 198 (368)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Confidence 9999999999999999999999999996443
No 3
>TIGR00378 cax calcium/proton exchanger (cax).
Probab=99.82 E-value=7.5e-20 Score=144.53 Aligned_cols=97 Identities=42% Similarity=0.664 Sum_probs=81.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh---------HHHHHHH-HHHHHHHHHHHHHHHhhccCcCChhhHHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV---------ASVNSGL-LMAVMGLLFPAVLHATHTELHFGKSELALS 70 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~---------a~~~s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS 70 (106)
|+.|++|++++||+++|+++++|+|+++||+|+ ++.++.+ +++++.+++|++++.+..+. .+.....+|
T Consensus 75 g~~~i~~gnivGS~i~NllLilGls~liggl~~~~q~~~~~~a~~~~~ll~la~~~l~lp~~~~~~~~~~-~~~~~~~ls 153 (349)
T TIGR00378 75 GLVRIVQASLTGSLLGNLLLVLGLCFFFGGLNYKQQTFNQTAARTNSSLLAIACVALLIPAARATLSHGK-EDGKILNLS 153 (349)
T ss_pred CChhhhHHHHHHHHHHhHHHHHHHHHHHhccccceeecCHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCc-cchHHHHHH
Confidence 788999999999999999999999999999988 2344666 88999999998875432211 123557899
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccc
Q 036295 71 RFSSYIMLVAYAAYLYFQLKSQRQLRDQ 98 (106)
Q Consensus 71 ~~~avvll~~Y~~~L~fql~TH~~~f~~ 98 (106)
|+.+++++++|++|++||+|||+++|++
T Consensus 154 ~~~aiill~lY~~~L~~~l~~h~~~f~~ 181 (349)
T TIGR00378 154 RGTSIVIIIVYVLFLYFQLGTHHALYEQ 181 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhCC
Confidence 9999999999999999999999999864
No 4
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=99.70 E-value=4e-17 Score=130.26 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccchh----------HHHHHHH-HHHHHHHHHHHHHHHhhccCcCChhhHHHHHH
Q 036295 4 RVVQQSLLGSILSNMLLVLGSAFFYGGLAV----------ASVNSGL-LMAVMGLLFPAVLHATHTELHFGKSELALSRF 72 (106)
Q Consensus 4 ~vVqasl~Gsil~nlLlvlGls~l~GGlr~----------a~~~s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~ 72 (106)
++++-++--.+.-.+.-++|+|+++||+|| +++++++ +++++++++|+++. ++ .....+|++
T Consensus 101 tlaRDtvfa~vMi~~nGilGl~ll~GGlr~~eQ~fn~~ga~~~~~~ll~La~l~LvlP~~~~----~~---~~s~~~s~~ 173 (366)
T PRK10599 101 TLMRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMALP----GA---NFSTGQALL 173 (366)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHhccccCeeecCHHhHHHHHHHHHHHHHHHHhcCcccC----CC---ccchhHHHH
Confidence 345555555666667788999999999999 1356677 99999999999853 11 234678999
Q ss_pred HHHHHHHHHHHHHHHhccccccccc
Q 036295 73 SSYIMLVAYAAYLYFQLKSQRQLRD 97 (106)
Q Consensus 73 ~avvll~~Y~~~L~fql~TH~~~f~ 97 (106)
+|++++++|+.||+||++|||++|+
T Consensus 174 ~avv~lvlY~~fL~fQl~tHr~~F~ 198 (366)
T PRK10599 174 VALISAAMYGVFLLIQTKTHQSLFV 198 (366)
T ss_pred HHHHHHHHHHHHHHHhccchHHHhc
Confidence 9999999999999999999999996
No 5
>TIGR00846 caca2 calcium/proton exchanger. This model is generated from the calcium ion/proton exchangers of the CacA family.
Probab=99.68 E-value=3.1e-16 Score=124.78 Aligned_cols=94 Identities=48% Similarity=0.708 Sum_probs=78.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh---H-------HHHHHH-HHHHHHHHHHHHHHHhhccCcCChhhHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV---A-------SVNSGL-LMAVMGLLFPAVLHATHTELHFGKSELAL 69 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~---a-------~~~s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~l 69 (106)
|+.+++++.++||+++|+++++|+|+++||+|+ + +..+.+ +++++.+++|++++.+..+ ++....+
T Consensus 93 g~~~la~gnivGS~i~NilLIlGl~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~l~lp~~~~~~~~~---~~~~~~l 169 (365)
T TIGR00846 93 GKVEVVRASLLGSILSNLLLVLGLSLFLGGIKNIREQRFNRGAAQVNSALLLLAILSLVLPLALPAGKPG---QDSILGL 169 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeccHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC---cchhHHH
Confidence 678999999999999999999999999999984 1 122346 7888999999887654321 2345679
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccc
Q 036295 70 SRFSSYIMLVAYAAYLYFQLKSQRQLRD 97 (106)
Q Consensus 70 S~~~avvll~~Y~~~L~fql~TH~~~f~ 97 (106)
|+..+++++++|++|++||+|+|++.|+
T Consensus 170 s~~~giill~ly~~yl~~~~~~~~~~f~ 197 (365)
T TIGR00846 170 SRGIAIVMLILYGAFLVFQLVTHRQLFE 197 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhccc
Confidence 9999999999999999999999999885
No 6
>PRK10734 putative calcium/sodium:proton antiporter; Provisional
Probab=98.30 E-value=2.9e-06 Score=66.89 Aligned_cols=84 Identities=25% Similarity=0.276 Sum_probs=58.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh--HHHHHH--HHHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV--ASVNSG--LLMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYI 76 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~--a~~~s~--l~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avv 76 (106)
|+.|+..+.++||.+.|+++++|++.+.++++. ...... .++.+..++... ..+ ..+++..+++
T Consensus 64 g~~~ia~GnilGSni~ni~lilg~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~~--------~~l~~~~g~~ 131 (325)
T PRK10734 64 GQRDLAVGTALGSNITNILLILGLAALIRPFTVHSDVLRRELPLMLLVSVLAGSV----LYD--------GQLSRSDGIF 131 (325)
T ss_pred CCCcchhhhhhhHHHHHHHHHHHHHHHhCCcccChHHHHHHHHHHHHHHHHHHHH----HHC--------CcCcHHHHHH
Confidence 678899999999999999999999999988754 211111 122221221111 111 1346888999
Q ss_pred HHHHHHHHHHHhcccccccc
Q 036295 77 MLVAYAAYLYFQLKSQRQLR 96 (106)
Q Consensus 77 ll~~Y~~~L~fql~TH~~~f 96 (106)
++.+|+.|++++.|+|++..
T Consensus 132 ll~~~~~yl~~~~~~~~~~~ 151 (325)
T PRK10734 132 LLLLAVLWLLFIVKIARLAE 151 (325)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999997554
No 7
>TIGR00367 K+-dependent Na+/Ca+ exchanger related-protein. This alignment models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat.
Probab=98.24 E-value=4.8e-06 Score=64.91 Aligned_cols=80 Identities=26% Similarity=0.438 Sum_probs=58.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh-HH-HHH--HH-HHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV-AS-VNS--GL-LMAVMGLLFPAVLHATHTELHFGKSELALSRFSSY 75 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~-a~-~~s--~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~av 75 (106)
|+.|+..+.++||.+.|.++++|+|.+.+.++. .+ ... .. .++...+... . .. ...++..++
T Consensus 63 g~~~la~g~ilGS~l~n~l~i~g~~~l~~~~~~~~~~~~~d~~~~l~~~~~~~~~--~---~~--------g~i~~~~gi 129 (307)
T TIGR00367 63 GQPDIGVGNVIGSNIFNILLILGLSAIFSPIIVDTDWLRRDFSFYLLVSILLLFF--G---LD--------GPISRLDGV 129 (307)
T ss_pred CCCCeehhhhhhHHHHHHHHHHHHHHhhcceeechHHHHHHHHHHHHHHHHHHHH--H---Hh--------CcchHHHHH
Confidence 567889999999999999999999999998765 11 111 12 3333322221 1 11 136799999
Q ss_pred HHHHHHHHHHHHhccccc
Q 036295 76 IMLVAYAAYLYFQLKSQR 93 (106)
Q Consensus 76 vll~~Y~~~L~fql~TH~ 93 (106)
+++..|+.|++++.++||
T Consensus 130 ~ll~~Yv~yl~~~~~~~~ 147 (307)
T TIGR00367 130 VLLFLYVVYLLFLVKVER 147 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999998
No 8
>PF01699 Na_Ca_ex: Sodium/calcium exchanger protein; InterPro: IPR004837 The sodium/calcium exchangers are a family of integral membrane proteins. This domain covers the integral membrane regions of these proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells []. Ca2+ is moved into or out of the cytosol depending on Na+ concentration []. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3 []. ; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3V5U_A 3V5S_A.
Probab=97.53 E-value=0.0012 Score=44.61 Aligned_cols=78 Identities=24% Similarity=0.489 Sum_probs=48.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh-------HHHH--HHH-HHHH-HHHHHHHHHHHhhccCcCChhhHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV-------ASVN--SGL-LMAV-MGLLFPAVLHATHTELHFGKSELAL 69 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~-------a~~~--s~l-~la~-i~lilP~~~~~~~~~~~~~~~~~~l 69 (106)
|+.|+..++++||.+.|++++.|++.+.+..++ .... ..+ .+++ +....+... ....+.
T Consensus 52 g~~~la~~~~~Gs~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 121 (140)
T PF01699_consen 52 GNPDLAIGNIIGSNIFNITLIVGLILLFGPIKLGSQTIDWSSFTRDFSFLLLAILLLILFFLAF----------IRDGRI 121 (140)
T ss_dssp T-CHHHHHHHHHHHHHHHHTHHHHHHHHS-B---------HHHHHHHHHHHHHHHHHHHCCT-------------HCT-B
T ss_pred cccchhhhcccchHHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHH----------HcCCeE
Confidence 567899999999999999999999999999984 1111 112 2221 112222111 011344
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 036295 70 SRFSSYIMLVAYAAYLYFQ 88 (106)
Q Consensus 70 S~~~avvll~~Y~~~L~fq 88 (106)
++..+++++.+|+.|++|.
T Consensus 122 ~~~~~~~ll~~y~~y~~~~ 140 (140)
T PF01699_consen 122 SRFEGLVLLILYILYLVFT 140 (140)
T ss_dssp SHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHhcC
Confidence 5888999999999999873
No 9
>COG0530 ECM27 Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.002 Score=50.98 Aligned_cols=84 Identities=32% Similarity=0.470 Sum_probs=60.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccchhHH--HH--HHH-HHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHH
Q 036295 2 MMRVVQQSLLGSILSNMLLVLGSAFFYGGLAVAS--VN--SGL-LMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYI 76 (106)
Q Consensus 2 ~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~a~--~~--s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avv 76 (106)
+.++.-..++||.+.|+.+++|++.++...+..+ .. ... .++...+..+... ...++..+++
T Consensus 72 ~~~iavGnvlGSni~ni~li~gl~ali~~~~~~~~~~~r~~~f~ll~~~~~~~~~~~-------------~~~~~~~gi~ 138 (320)
T COG0530 72 NPDIAVGNVLGSNIFNILLILGLAALIAPLKVDSDVLRREIPFLLLATLILLLVLLD-------------GHLSRLDGIV 138 (320)
T ss_pred CCCeeeehhhhHHHHHHHHHHHHHHHHhhhHhhhhHHHHhhHHHHHHHHHHHHHHHc-------------CCccHHHHHH
Confidence 4455566788999999999999999999999922 22 222 3344333322111 2233558999
Q ss_pred HHHHHHHHHHHhcccccccccc
Q 036295 77 MLVAYAAYLYFQLKSQRQLRDQ 98 (106)
Q Consensus 77 ll~~Y~~~L~fql~TH~~~f~~ 98 (106)
++..|+.|+++..|+++..-++
T Consensus 139 ll~l~~~yl~~~~~~~~~~~~~ 160 (320)
T COG0530 139 LLLLYVLYLYYLLKLSREAEEP 160 (320)
T ss_pred HHHHHHHHHHHHHHhhhhcccc
Confidence 9999999999999999988873
No 10
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=93.56 E-value=0.15 Score=46.16 Aligned_cols=74 Identities=20% Similarity=0.420 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccchh----HHH--HHHH-HHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHH
Q 036295 4 RVVQQSLLGSILSNMLLVLGSAFFYGGLAV----ASV--NSGL-LMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYI 76 (106)
Q Consensus 4 ~vVqasl~Gsil~nlLlvlGls~l~GGlr~----a~~--~s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avv 76 (106)
++.-..++||-+.|+++|+|+|.++..... ... .... ++++..++. ++ .. -.+++.-+++
T Consensus 524 DIGVGNIVGSnIFNILLVLGl~aLis~~~l~Ld~~~L~RDllFyILAv~lLil--f~---lD--------G~Itr~EgII 590 (1096)
T TIGR00927 524 NVGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPLFRDVSFYILDLMMLIL--FF---LD--------SLIAWWESLL 590 (1096)
T ss_pred cceehhhHhHHHHHHHHHHhhheeeccccccccccceehhHHHHHHHHHHHHH--HH---hC--------CeEcHHHHHH
Confidence 444567999999999999999999876221 001 1122 333333221 11 11 1234677888
Q ss_pred HHHHHHHHHHHhcc
Q 036295 77 MLVAYAAYLYFQLK 90 (106)
Q Consensus 77 ll~~Y~~~L~fql~ 90 (106)
++++|++|+++...
T Consensus 591 LLlLYiiYVvvm~~ 604 (1096)
T TIGR00927 591 LLLAYALYVFTMKW 604 (1096)
T ss_pred HHHHHHHHHHHHHH
Confidence 88889888866543
No 11
>TIGR00846 caca2 calcium/proton exchanger. This model is generated from the calcium ion/proton exchangers of the CacA family.
Probab=93.43 E-value=0.28 Score=39.31 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccch---hH----HHHHHH-HHHHHHHHHHHHHHHhhccCcCChhhHHHHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLA---VA----SVNSGL-LMAVMGLLFPAVLHATHTELHFGKSELALSRF 72 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr---~a----~~~s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~ 72 (106)
|+.|+.-+.++||-+.|.++++|.+.+++.+. -. .....+ .++ .++++... .+ .+..|.
T Consensus 282 g~~~lavg~~iGSni~n~l~vl~~~~li~~~~~~~~~l~~~~~~~~~l~~s--~~~~~~~~----~~-------~~~~~~ 348 (365)
T TIGR00846 282 NKLDIALGVALGSALQIALFVVPVVVLVAWMLGIPMDLNFGAPETVALALS--VFLTTITL----QD-------GRSNYL 348 (365)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeccCcHHHHHHHHHH--HHHHHHHH----cC-------CcCcHH
Confidence 67888999999999999999999999998432 11 111122 222 22233221 11 124578
Q ss_pred HHHHHHHHHHHHHH
Q 036295 73 SSYIMLVAYAAYLY 86 (106)
Q Consensus 73 ~avvll~~Y~~~L~ 86 (106)
-+++++.+|+.|..
T Consensus 349 eG~~ll~~Y~~~~~ 362 (365)
T TIGR00846 349 EGAVLLALYIIIAM 362 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999975
No 12
>PRK10734 putative calcium/sodium:proton antiporter; Provisional
Probab=92.23 E-value=1.2 Score=35.13 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=51.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh--HHHHH--HHHHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV--ASVNS--GLLMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYI 76 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~--a~~~s--~l~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avv 76 (106)
|+.+..-+.++||=+-|.++++|.+.++....- ....- ..++.+..+.++..+. + + .+..|...++
T Consensus 235 g~~~~avgniiGsnifni~~~lg~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~----~---~~i~r~~G~~ 304 (325)
T PRK10734 235 GENDIAVGNIIGSNIFNIVIVLGLPALISPGEINPLAFSRDYWVMLLVSVIFALLCWR---R----K---RRIGRGAGAL 304 (325)
T ss_pred CCCchHHHHHHhHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHH---c----C---CccChHHHHH
Confidence 567888899999999999999999999865322 11111 1122222223332221 1 0 2355888999
Q ss_pred HHHHHHHHHHHhcc
Q 036295 77 MLVAYAAYLYFQLK 90 (106)
Q Consensus 77 ll~~Y~~~L~fql~ 90 (106)
++.+|+.|+....+
T Consensus 305 Ll~~Y~~y~~~l~~ 318 (325)
T PRK10734 305 LLGGFIVWLAMLYW 318 (325)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887764
No 13
>TIGR00367 K+-dependent Na+/Ca+ exchanger related-protein. This alignment models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat.
Probab=89.89 E-value=2.2 Score=33.25 Aligned_cols=72 Identities=21% Similarity=0.426 Sum_probs=45.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh--HHH---HHHHHHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV--ASV---NSGLLMAVMGLLFPAVLHATHTELHFGKSELALSRFSSY 75 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~--a~~---~s~l~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~av 75 (106)
|+.|..-+.++||-+-|.++++|++.+.+..+. ... ...+.+......+.. . . + .+.++.-++
T Consensus 231 g~~~~avg~~iGs~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~--------~~i~~~~g~ 298 (307)
T TIGR00367 231 GLGDIAVGNVIGSNIFNILVGLGVPSLFYPIPVEPLAYSLDAPVMVIVTLVLMLVF--K-T-S--------MKLGRWEGF 298 (307)
T ss_pred CCCchHHHHHhhhHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH--H-h-c--------CeehHHHHH
Confidence 456777789999999999999999999988533 111 111211111111111 1 0 0 224577899
Q ss_pred HHHHHHHHH
Q 036295 76 IMLVAYAAY 84 (106)
Q Consensus 76 vll~~Y~~~ 84 (106)
.++.+|+.|
T Consensus 299 ~l~~~Y~~y 307 (307)
T TIGR00367 299 LLLALYIAY 307 (307)
T ss_pred HHHHHHHhC
Confidence 999999876
No 14
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=86.40 E-value=0.32 Score=44.08 Aligned_cols=87 Identities=11% Similarity=0.216 Sum_probs=53.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh---------HHHHHHH--HHHHHHHHHHHHHHHhhccCcCChhhHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV---------ASVNSGL--LMAVMGLLFPAVLHATHTELHFGKSELAL 69 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~---------a~~~s~l--~la~i~lilP~~~~~~~~~~~~~~~~~~l 69 (106)
|..+..-++.+||=+-|+++.+|+.+++=-..+ .+...+. ++..+.+.+ +..... + ..+
T Consensus 994 G~gdMAVan~iGSNIFnIllgLGlPWlI~~li~g~~pV~V~S~GL~~sI~LLF~~Llfli---ssI~l~-----k--wrL 1063 (1096)
T TIGR00927 994 GLGDMAVSSSVGSNIFDITVGLPVPWLLFSLINGLQPVPVSSNGLFCAIVLLFLMLLFVI---SSIASC-----K--WRM 1063 (1096)
T ss_pred cCCcceeeeccccchheeeeeccHHHHHHHHhccCcceeecCccHHHHHHHHHHHHHHHH---HHHHhc-----c--eEE
Confidence 344556678899999999999999866532222 1121111 222211111 111111 1 355
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccc
Q 036295 70 SRFSSYIMLVAYAAYLYFQLKSQRQLRD 97 (106)
Q Consensus 70 S~~~avvll~~Y~~~L~fql~TH~~~f~ 97 (106)
.|..+++++++|++|+.|..--+..+|.
T Consensus 1064 ~R~lGivlLvlYvvFLV~aiLiE~~ii~ 1091 (1096)
T TIGR00927 1064 NKILGFTMFLLYFVFLIISVMLEDRIIS 1091 (1096)
T ss_pred echHHHHHHHHHHHHHHHHHHHhcceEe
Confidence 6889999999999999999887777763
No 15
>COG0530 ECM27 Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]
Probab=74.10 E-value=9.9 Score=30.13 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh--HHHH-HHH-HHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV--ASVN-SGL-LMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYI 76 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~--a~~~-s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avv 76 (106)
|+.++.-+.++||-+-|.++++|.+-+.+-... .... ... ++.+...+..-. .. .-.++.|..+++
T Consensus 236 g~~~iavGnviGSni~n~~~~lGi~~~~~~~~~~~~~~~~~~~vmi~~~l~l~l~~-~~---------~~~~i~r~~g~~ 305 (320)
T COG0530 236 GEDDIAVGNVIGSNIFNILIVLGISALIGPITVEPSALLVDAPVLILVTLLLLLFL-AR---------RRRRIGRKEGLL 305 (320)
T ss_pred CCCCeEEeeecchHHHHHHHHHhHHHhccccccCchhHHHHHHHHHHHHHHHHHHH-Hh---------ccCcchhHHHHH
Confidence 344555667899999999999999999998444 2111 122 333333333221 11 114455788999
Q ss_pred HHHHHHHHHHHh
Q 036295 77 MLVAYAAYLYFQ 88 (106)
Q Consensus 77 ll~~Y~~~L~fq 88 (106)
++..|..|..+-
T Consensus 306 ll~~Y~~~~~~~ 317 (320)
T COG0530 306 LLGLYIVYVALL 317 (320)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 16
>PLN03151 cation/calcium exchanger; Provisional
Probab=71.24 E-value=20 Score=31.27 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHH--HHH-HHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHH
Q 036295 4 RVVQQSLLGSILSNMLLVLGSAFFYGGLAV-----ASVN--SGL-LMAVMGLLFPAVLHATHTELHFGKSELALSRFSSY 75 (106)
Q Consensus 4 ~vVqasl~Gsil~nlLlvlGls~l~GGlr~-----a~~~--s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~av 75 (106)
++.-+.++||-+.|.+++.|++.+....+. .... ... ++++..+. .+. .. -..++.-|+
T Consensus 208 ~l~ig~ilGs~lf~~~vV~G~v~l~~~~~pf~v~~~~f~RD~~F~lla~~~l~---~~l--~~--------g~v~~~eai 274 (650)
T PLN03151 208 EVGLNSVLGGAVFVTCVVVGIVSLCVADKEVQIDKRCFIRDLCFFLFTLVSLL---VIL--MV--------GKVTVGGAI 274 (650)
T ss_pred ceeeehhhhHHHHHHHHHHHHHHHhccCCceeecchhHHHhHHHHHHHHHHHH---HHH--Hc--------CeEhHHHHH
Confidence 455568999999999999999988753221 1111 122 44433332 111 11 113467788
Q ss_pred HHHHHHHHHHHHh
Q 036295 76 IMLVAYAAYLYFQ 88 (106)
Q Consensus 76 vll~~Y~~~L~fq 88 (106)
+++.+|++|+.+-
T Consensus 275 ~ll~lY~~Yv~vv 287 (650)
T PLN03151 275 AFVSIYVVYAFLV 287 (650)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998543
No 17
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=68.36 E-value=7.9 Score=26.85 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhccchh
Q 036295 14 ILSNMLLVLGSAFFYGGLAV 33 (106)
Q Consensus 14 il~nlLlvlGls~l~GGlr~ 33 (106)
+++|+|++.|..+++|--|.
T Consensus 35 ~lGNlL~iiG~fliags~ks 54 (129)
T COG5120 35 ILGNLLMIIGIFLIAGSRKS 54 (129)
T ss_pred HhcCHHHHHHHHHHhcccce
Confidence 57999999999999998876
No 18
>PLN03151 cation/calcium exchanger; Provisional
Probab=66.26 E-value=24 Score=30.78 Aligned_cols=75 Identities=13% Similarity=0.230 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccchh-------HHHHHHH--------HHHHHHHHHHHHHHHhhccCcCChhhHH
Q 036295 4 RVVQQSLLGSILSNMLLVLGSAFFYGGLAV-------ASVNSGL--------LMAVMGLLFPAVLHATHTELHFGKSELA 68 (106)
Q Consensus 4 ~vVqasl~Gsil~nlLlvlGls~l~GGlr~-------a~~~s~l--------~la~i~lilP~~~~~~~~~~~~~~~~~~ 68 (106)
+..-++..|+.+-|+|+-+|++++..-.+. .+.++.. .+...-+.+|. . + -.
T Consensus 550 ~mA~~a~~ggp~F~il~glG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~li~~~~------~----~---f~ 616 (650)
T PLN03151 550 QIAMSGCYAGPMFNTLVGLGMSMLLGAWSKSPESYMLPEDSSLFYTMGFLVSGLIWALVVLPR------N----D---MR 616 (650)
T ss_pred HHHHHHhhhhhHHHHHHhccHHHHHHHhhcCCCceeecCCChHHHHHHHHHHHHHHHHHHHHH------h----C---ee
Confidence 345568899999999999999999986643 1111111 11111122221 0 0 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 036295 69 LSRFSSYIMLVAYAAYLYFQLKS 91 (106)
Q Consensus 69 lS~~~avvll~~Y~~~L~fql~T 91 (106)
+.|..++.++.+|++|+.|.+-+
T Consensus 617 ~~R~~G~~li~~Y~~Fl~~~~~~ 639 (650)
T PLN03151 617 PNKTLGVGLIALYLIFLTFRVST 639 (650)
T ss_pred echhHHHHHHHHHHHHHHHHHHH
Confidence 44778999999999999998754
No 19
>TIGR00378 cax calcium/proton exchanger (cax).
Probab=64.73 E-value=35 Score=27.14 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=26.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLA 32 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr 32 (106)
|+.|..-.-.+||-+.|.+++.....++|=..
T Consensus 266 ~~~~~ai~~~~GS~i~~~l~v~p~lvl~~~~~ 297 (349)
T TIGR00378 266 DKMDLALGVAIGSSLQIALFVAPVLVIVGWMI 297 (349)
T ss_pred CCcccHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 56778888899999999999988877777443
No 20
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.69 E-value=26 Score=30.01 Aligned_cols=67 Identities=16% Similarity=0.418 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-chh-H--HH--HHHH-HHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHHHHHH
Q 036295 8 QSLLGSILSNMLLVLGSAFFYGG-LAV-A--SV--NSGL-LMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYIMLVA 80 (106)
Q Consensus 8 asl~Gsil~nlLlvlGls~l~GG-lr~-a--~~--~s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avvll~~ 80 (106)
..|+||---|+|.|+|.|=++.+ .-+ + .. -.+. +++.+.++. | ..+ ...+---|.+|+.+
T Consensus 128 GTIVGSAvFNIL~Vig~C~LFSrqvl~LtWWPLfRD~sfY~lsl~~Li~---F--f~D--------~~I~WwEaL~L~~~ 194 (588)
T KOG1307|consen 128 GTIVGSAVFNILCVIGVCGLFSRQVLNLTWWPLFRDVSFYTLSLIMLIY---F--FLD--------ELIMWWEALALLLM 194 (588)
T ss_pred eeeeehhhhhHHHHHHHHHhhcccccccccchhhhhhHHHHHHHHHHHH---H--HHh--------hHHHHHHHHHHHHH
Confidence 46889999999999999987763 222 1 00 1223 555555543 1 110 22334458899999
Q ss_pred HHHHHHH
Q 036295 81 YAAYLYF 87 (106)
Q Consensus 81 Y~~~L~f 87 (106)
|+.|.+|
T Consensus 195 Yi~Yv~~ 201 (588)
T KOG1307|consen 195 YISYVVF 201 (588)
T ss_pred HHHHhee
Confidence 9999875
No 21
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=56.69 E-value=18 Score=20.17 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 036295 72 FSSYIMLVAYAAYLYFQLKSQ 92 (106)
Q Consensus 72 ~~avvll~~Y~~~L~fql~TH 92 (106)
..|+.++++|++..-|.+-||
T Consensus 18 ~F~l~mi~vFi~li~ytl~th 38 (38)
T PF09125_consen 18 AFALAMILVFIALIGYTLATH 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 568888999999988888887
No 22
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=52.97 E-value=43 Score=24.42 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 036295 41 LMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYIMLVAYAAYLYFQLKSQRQLRD 97 (106)
Q Consensus 41 ~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avvll~~Y~~~L~fql~TH~~~f~ 97 (106)
.+++.++..-+.+...+++++.++-..++. .|++-++=..+++-++|+|+.+-|
T Consensus 25 ~lai~sl~~s~llI~lFg~~~~~nf~~Nll---GVil~~~~~~~~l~~~k~~p~m~E 78 (165)
T PF11286_consen 25 SLAILSLAFSQLLIALFGGESGGNFHWNLL---GVILGLLLTSALLRQLKTHPFMTE 78 (165)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeeeHH---HHHHHHHHHHHHHHHHccChHHHH
Confidence 778888888887777776544443333332 444444455666669999987643
No 23
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=49.76 E-value=57 Score=24.17 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH---HHHHHhhccchhHHHHHHH-HHHHHHHHHHH
Q 036295 10 LLGSILSNMLLV---LGSAFFYGGLAVASVNSGL-LMAVMGLLFPA 51 (106)
Q Consensus 10 l~Gsil~nlLlv---lGls~l~GGlr~a~~~s~l-~la~i~lilP~ 51 (106)
++++++-|+-.. +|+|=|.|=-|.-++..+| ...++.+.+.+
T Consensus 8 fi~~ilinNfvlvkFLGlCpFmGvSkkletA~GM~~AttFV~t~as 53 (193)
T COG4657 8 FISTVLINNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVMTLAS 53 (193)
T ss_pred HHHHHHHHHHHHHHHHcCCcccccchhhhhhhCcchHHHHHHHHHH
Confidence 567888776554 9999999998884433334 33333333333
No 24
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=49.40 E-value=1.3e+02 Score=23.65 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=26.5
Q ss_pred HHHHHHHHHh-hccchhHH---------HHHHH-HHHHHHHHHHHHHHHhhccCcCChhhHHHHH
Q 036295 18 MLLVLGSAFF-YGGLAVAS---------VNSGL-LMAVMGLLFPAVLHATHTELHFGKSELALSR 71 (106)
Q Consensus 18 lLlvlGls~l-~GGlr~a~---------~~s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~lS~ 71 (106)
.|-++|+|-. .|+..++. ..+.+ .++.+++.=| |....+++++++.++.++.
T Consensus 144 aLailG~s~aiaGsf~~~~~~~~vi~~G~IAl~Fi~~~mAilHP--FNACLGPnE~q~RTL~La~ 206 (265)
T TIGR01148 144 TLALLGLSVAIAGSFTWQAVISYVIANGYIALLFIIGGMAILHP--FNACLGPNESQDRTLWLAV 206 (265)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHhcccHHHHHHHHHHHHhcCc--chhccCCCcchhHHHHHHH
Confidence 5777888876 56666522 22334 5555555555 3333443444444444333
No 25
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=47.88 E-value=10 Score=26.80 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhccchh
Q 036295 15 LSNMLLVLGSAFFYGGLAV 33 (106)
Q Consensus 15 l~nlLlvlGls~l~GGlr~ 33 (106)
++|+|++.|.++.+|=-|-
T Consensus 36 ~GNlLfi~GvsliiG~~~t 54 (137)
T KOG1743|consen 36 MGNLLFIIGVSLIIGFRKT 54 (137)
T ss_pred hcchHHHHhHHHhhcchhh
Confidence 6899999999999987655
No 26
>PRK10692 hypothetical protein; Provisional
Probab=47.80 E-value=41 Score=22.25 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhccchh
Q 036295 13 SILSNMLLVLGSAFFYGGLAV 33 (106)
Q Consensus 13 sil~nlLlvlGls~l~GGlr~ 33 (106)
..++|.|..+|+...+||+-+
T Consensus 7 ~~~GN~lMglGmv~Mv~gigy 27 (92)
T PRK10692 7 SLLGNVLMGLGLVVMVVGVGY 27 (92)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 468999999999999999999
No 27
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=46.91 E-value=39 Score=19.91 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 036295 69 LSRFSSYIMLVAYAAYLYFQLKS 91 (106)
Q Consensus 69 lS~~~avvll~~Y~~~L~fql~T 91 (106)
+-..+|+++.+..+..++...|+
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 33455666666666666666665
No 28
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=44.13 E-value=97 Score=20.81 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhccchh
Q 036295 14 ILSNMLLVLGSAFFYGGLAV 33 (106)
Q Consensus 14 il~nlLlvlGls~l~GGlr~ 33 (106)
-+||++.+.|.+++.|-.|+
T Consensus 31 tlGnil~l~s~~fL~Gp~~q 50 (118)
T PF04178_consen 31 TLGNILFLASTFFLIGPKKQ 50 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998888
No 29
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=41.24 E-value=2e+02 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 036295 4 RVVQQSLLGSILSNMLLVLGSAFFYGGLAV 33 (106)
Q Consensus 4 ~vVqasl~Gsil~nlLlvlGls~l~GGlr~ 33 (106)
++.-+-++||=+.|+++++|++.++..+.+
T Consensus 819 d~aigNv~GSNifNi~l~lGv~~~i~~~~~ 848 (928)
T TIGR00845 819 DASIGNVTGSNAVNVFLGIGVAWSIAAIYH 848 (928)
T ss_pred ceeEEeecchHHHHHHHHHHHHHHHhhhhh
Confidence 334455799999999999999999997654
No 30
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=40.37 E-value=27 Score=22.97 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhccchh
Q 036295 13 SILSNMLLVLGSAFFYGGLAV 33 (106)
Q Consensus 13 sil~nlLlvlGls~l~GGlr~ 33 (106)
.+++|.|..+|+...+||+-+
T Consensus 7 ~~~GN~lMglGmv~Mv~gigy 27 (89)
T PF10762_consen 7 FLLGNVLMGLGMVVMVGGIGY 27 (89)
T ss_pred HHHhhHHHHHhHHHHHHhHHH
Confidence 468999999999999999999
No 31
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=39.73 E-value=41 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 036295 65 SELALSRFSSYIMLVAYAAYLYFQLKSQRQLR 96 (106)
Q Consensus 65 ~~~~lS~~~avvll~~Y~~~L~fql~TH~~~f 96 (106)
.....+.+++...++-|++|+=++-+++.++=
T Consensus 7 ~~~~~~ag~a~~~flgYciYFD~KRR~dPdFR 38 (148)
T TIGR00985 7 SNVVIAAGIAAAAFLGYAIYFDYKRRNDPDFR 38 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHH
Confidence 34667788888999999999988888776653
No 32
>COG4270 Predicted membrane protein [Function unknown]
Probab=33.87 E-value=51 Score=23.03 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=12.4
Q ss_pred HHHHHHHhhccchh
Q 036295 20 LVLGSAFFYGGLAV 33 (106)
Q Consensus 20 lvlGls~l~GGlr~ 33 (106)
-.++..|.++|++|
T Consensus 11 ~~la~~f~~iGi~H 24 (131)
T COG4270 11 AFLAAAFLLIGIGH 24 (131)
T ss_pred HHHHHHHHHHhhhh
Confidence 36899999999999
No 33
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=33.34 E-value=63 Score=21.09 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 036295 65 SELALSRFSSYIMLVAYAAYLYFQLKSQRQ 94 (106)
Q Consensus 65 ~~~~lS~~~avvll~~Y~~~L~fql~TH~~ 94 (106)
..-.+|+++..+.-+++.+.+|||+-=+.+
T Consensus 14 spWrls~I~d~Fwgi~~fI~lFF~Tl~~p~ 43 (91)
T PF10961_consen 14 SPWRLSRITDFFWGIINFIVLFFQTLFSPD 43 (91)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 446788999999999999999999854443
No 34
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.94 E-value=2e+02 Score=21.20 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhccchh-------HHHHHHH-HHHHHHHHHHHH
Q 036295 14 ILSNMLLVLGSAFFYGGLAV-------ASVNSGL-LMAVMGLLFPAV 52 (106)
Q Consensus 14 il~nlLlvlGls~l~GGlr~-------a~~~s~l-~la~i~lilP~~ 52 (106)
-+||++.+.+.+++.|=.++ ++.-+++ .++++.+.+=.+
T Consensus 82 TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~a 128 (175)
T KOG2887|consen 82 TLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVA 128 (175)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999997777 3444555 555554444433
No 35
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=30.98 E-value=2.4e+02 Score=21.40 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhh
Q 036295 45 MGLLFPAVLHATH 57 (106)
Q Consensus 45 i~lilP~~~~~~~ 57 (106)
.++++|++.....
T Consensus 177 ~aliiPn~~~~~~ 189 (224)
T PF09930_consen 177 SALIIPNYIQAKQ 189 (224)
T ss_pred HHHHHhhHHHHHh
Confidence 4678998876553
No 36
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=30.71 E-value=2.7e+02 Score=21.90 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=25.9
Q ss_pred HHHHHHHHHh-hccchhH---------HHHHHH-HHHHHHHHHHHHHHHhhccCcCChhhHHH
Q 036295 18 MLLVLGSAFF-YGGLAVA---------SVNSGL-LMAVMGLLFPAVLHATHTELHFGKSELAL 69 (106)
Q Consensus 18 lLlvlGls~l-~GGlr~a---------~~~s~l-~la~i~lilP~~~~~~~~~~~~~~~~~~l 69 (106)
.|-++|+|-. .|+..++ +..+.+ .++.+++.=| |....+++++++.++.+
T Consensus 138 aLailG~s~a~~Gsf~~~~~~~~vi~~G~IAl~FI~~~mAIlHP--FNACLGP~E~q~RTL~l 198 (264)
T PRK01030 138 ALAILGFSTAIAGSFDFDAIITSVIATGFIALLFILGGMAILHP--FNACLGPNESQDRTLTL 198 (264)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHhcccHHHHHHHHHHHHhcCc--cccccCCCcchhHHHHH
Confidence 5778888876 6776662 222334 5555555555 23333333334444433
No 37
>KOG2399 consensus K+-dependent Na+:Ca2+ antiporter [Inorganic ion transport and metabolism]
Probab=28.64 E-value=1.6e+02 Score=25.71 Aligned_cols=80 Identities=28% Similarity=0.360 Sum_probs=48.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh-HH----------HHHHHHHHHHHHHHHHHHHHhhccCcCChhhHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV-AS----------VNSGLLMAVMGLLFPAVLHATHTELHFGKSELAL 69 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~-a~----------~~s~l~la~i~lilP~~~~~~~~~~~~~~~~~~l 69 (106)
|-.++.=|+-.|..+-|.+.-+|+++...-+.. ++ ...... =.++++.-..... .+ -.++
T Consensus 508 G~p~MAmaac~GGplfn~lvg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~f-L~i~l~~slv~~~--~~------~f~~ 578 (605)
T KOG2399|consen 508 GYPRMAMAACIGGPLFNLLVGLGLPLVISSLQGKPGNIVIPEDNSLRITLIF-LLIGLLTSLVLIP--TN------RFRL 578 (605)
T ss_pred CcHHHHHHHHhhhHHHHHHHHhhHHHHHHHHhcCCCceecccCCceehhHHH-HHHHHHHHHHHHh--cc------ccee
Confidence 456778899999999999999999999987766 11 011110 1111211111111 10 1334
Q ss_pred HHHHHHHHHHHHHHH-HHHhc
Q 036295 70 SRFSSYIMLVAYAAY-LYFQL 89 (106)
Q Consensus 70 S~~~avvll~~Y~~~-L~fql 89 (106)
.|..++.|+.+|+.| +.+.+
T Consensus 579 ~r~~gi~L~~lyi~f~~~~~l 599 (605)
T KOG2399|consen 579 RRVLGIGLLSLYIAFTLIFIL 599 (605)
T ss_pred ccchhhHHHHHHHHHHHHHHH
Confidence 477899999999999 55544
No 38
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=27.95 E-value=84 Score=17.98 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh--cccccccccccc
Q 036295 65 SELALSRFSSYIMLVAYAAYLYFQ--LKSQRQLRDQVN 100 (106)
Q Consensus 65 ~~~~lS~~~avvll~~Y~~~L~fq--l~TH~~~f~~~~ 100 (106)
..+.++..+.++.+..|.+|.-|- -|.=|+=|++.|
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppSk~LrDPfeeHe 42 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPSKELRDPFEEHE 42 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCccccCCcccccC
Confidence 345667777778888898888884 344555565554
No 39
>COG5521 Predicted integral membrane protein [Function unknown]
Probab=27.41 E-value=3.1e+02 Score=21.57 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 036295 39 GLLMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYIMLVAYAAYLYFQLKSQR 93 (106)
Q Consensus 39 ~l~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avvll~~Y~~~L~fql~TH~ 93 (106)
+.-++.=|+.+|+...-..+--..+ ...-..+=....++|+.|.+ .|||.
T Consensus 219 ~~~l~lnclalP~laa~algff~qd---~ttim~vqs~g~vLml~w~F--yKTrf 268 (275)
T COG5521 219 AASLALNCLALPALAAAALGFFHQD---LTTIMMVQSCGVVLMLSWAF--YKTRF 268 (275)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHHHH--hhhcc
Confidence 3345555777887665544311111 12223334455667777777 45554
No 40
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=25.04 E-value=1.2e+02 Score=19.86 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 036295 73 SSYIMLVAYAAYLYFQLKS 91 (106)
Q Consensus 73 ~avvll~~Y~~~L~fql~T 91 (106)
.....+++++.|++||++.
T Consensus 9 ~~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 9 GVGAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888764
No 41
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=24.87 E-value=37 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccc
Q 036295 71 RFSSYIMLVAYAAYLYFQLKSQRQLRD 97 (106)
Q Consensus 71 ~~~avvll~~Y~~~L~fql~TH~~~f~ 97 (106)
..+-++++++|++|-|+=+|.++....
T Consensus 69 ls~v~IlVily~IyYFVILRer~~~~~ 95 (101)
T PF06024_consen 69 LSFVCILVILYAIYYFVILRERQKSIR 95 (101)
T ss_pred HHHHHHHHHHhhheEEEEEeccccccc
Confidence 344457778899999999988887765
No 42
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=24.59 E-value=97 Score=18.46 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHH
Q 036295 9 SLLGSILSNMLL 20 (106)
Q Consensus 9 sl~Gsil~nlLl 20 (106)
-.+|.|+||+.+
T Consensus 11 iVlgvIigNia~ 22 (55)
T PF11446_consen 11 IVLGVIIGNIAA 22 (55)
T ss_pred HHHHHHHhHHHH
Confidence 456777777554
No 43
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=23.91 E-value=91 Score=20.65 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036295 71 RFSSYIMLVAYAAYLYF 87 (106)
Q Consensus 71 ~~~avvll~~Y~~~L~f 87 (106)
.++=+...++|++|+||
T Consensus 42 i~~lvaVg~~YL~y~~f 58 (91)
T PF01708_consen 42 IFTLVAVGCLYLAYTWF 58 (91)
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 34555667789999887
No 44
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.89 E-value=1.2e+02 Score=15.84 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 036295 70 SRFSSYIMLVAYAAYLYFQL 89 (106)
Q Consensus 70 S~~~avvll~~Y~~~L~fql 89 (106)
+..+.+++.++-..||.|.+
T Consensus 4 ~vi~g~llv~lLl~YLvYAL 23 (29)
T PRK14750 4 SIVCGALLVLLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544
No 45
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.38 E-value=1.3e+02 Score=17.72 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 036295 10 LLGSILSNMLLVLGSAFFYGG 30 (106)
Q Consensus 10 l~Gsil~nlLlvlGls~l~GG 30 (106)
+-|=|++-+|+++|+..+..|
T Consensus 16 igGLi~A~vlfi~Gi~iils~ 36 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILIILSG 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHHcC
Confidence 457788889999999877764
No 46
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=22.91 E-value=1e+02 Score=17.95 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccc
Q 036295 72 FSSYIMLVAYAAYLYFQLKSQRQ 94 (106)
Q Consensus 72 ~~avvll~~Y~~~L~fql~TH~~ 94 (106)
..+++...+.++-+..|.+++++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~ 53 (55)
T PF03988_consen 31 ISTLIFAALLAVVLALWYRSKRY 53 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44566677777777788777765
No 47
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=22.75 E-value=3.8e+02 Score=21.02 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=9.6
Q ss_pred HHHHHHHHHhh-ccchh
Q 036295 18 MLLVLGSAFFY-GGLAV 33 (106)
Q Consensus 18 lLlvlGls~l~-GGlr~ 33 (106)
.|-++|+|--. |+..+
T Consensus 145 aL~ilG~s~aiaGsf~~ 161 (262)
T PF04211_consen 145 ALAILGFSAAIAGSFDF 161 (262)
T ss_pred HHHHHHHHHHHhccccH
Confidence 56677777544 44554
No 48
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=22.52 E-value=1.9e+02 Score=19.10 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=5.4
Q ss_pred HHHHhhccchh
Q 036295 23 GSAFFYGGLAV 33 (106)
Q Consensus 23 Gls~l~GGlr~ 33 (106)
|..=++||+|-
T Consensus 52 aVvglIGai~V 62 (98)
T PF13572_consen 52 AVVGLIGAIRV 62 (98)
T ss_pred HHHHHHHHHHH
Confidence 34445555554
No 49
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=20.65 E-value=2.4e+02 Score=18.78 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 036295 41 LMAVMGLLFPAVLHAT 56 (106)
Q Consensus 41 ~la~i~lilP~~~~~~ 56 (106)
.+..+.+.+|++....
T Consensus 49 If~Gi~lMlPAav~iv 64 (96)
T PF07214_consen 49 IFVGIGLMLPAAVNIV 64 (96)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677888888766544
Done!