Query 036295
Match_columns 106
No_of_seqs 110 out of 802
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 98.6 1.6E-07 5.4E-12 72.8 8.0 81 1-94 65-148 (320)
2 3v5u_A Uncharacterized membran 94.8 0.09 3.1E-06 40.4 7.1 81 1-93 224-305 (320)
3 4ev6_A Magnesium transport pro 37.1 1.2E+02 0.0042 22.4 7.0 54 36-89 275-335 (339)
4 2l9u_A Receptor tyrosine-prote 35.8 51 0.0017 17.4 3.4 29 66-94 9-37 (40)
5 2jp3_A FXYD domain-containing 21.5 99 0.0034 18.5 3.1 21 10-30 19-39 (67)
6 2jo1_A Phospholemman; FXYD1, N 20.5 83 0.0028 19.0 2.7 21 10-30 18-38 (72)
7 2zxe_G FXYD10, phospholemman-l 20.1 1E+02 0.0035 18.7 3.1 22 10-31 21-42 (74)
8 2iub_A CORA, divalent cation t 17.7 1.5E+02 0.005 22.2 4.2 53 36-88 299-358 (363)
9 2jwa_A Receptor tyrosine-prote 16.0 1.6E+02 0.0053 16.0 3.6 7 10-16 14-20 (44)
10 1v54_K IHQ, cytochrome C oxida 15.4 85 0.0029 18.0 1.8 18 16-33 14-31 (56)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=98.58 E-value=1.6e-07 Score=72.80 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=60.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchh-HHHH--HHHHHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAV-ASVN--SGLLMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYIM 77 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~-a~~~--s~l~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avvl 77 (106)
|+.|+..+.++||.+.|+++++|+|.++++++. +... ...++....++++.. . + . ++|..++++
T Consensus 65 g~~diaiGnivGSni~nillvlG~~~li~p~~v~~~~~~d~~~~l~~~~~l~~~~----~-----~-g---is~~~g~~L 131 (320)
T 3v5u_A 65 HAPGISIGNAIGSCICNIGLVLGLSAIISPIIVDKNLQKNILVYLLFVIFAAVIG----I-----D-G---FSWIDGVVL 131 (320)
T ss_dssp TCHHHHHHHHHHHHHHHHHTHHHHHHHHSCBCCCHHHHHHHHHHHHHHHHHHHHT----T-----T-C---BCHHHHHHH
T ss_pred CCCceeeeeecchHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHH----H-----c-c---cHHHHHHHH
Confidence 678999999999999999999999999999877 2111 122222222223321 1 1 1 568899999
Q ss_pred HHHHHHHHHHhcccccc
Q 036295 78 LVAYAAYLYFQLKSQRQ 94 (106)
Q Consensus 78 l~~Y~~~L~fql~TH~~ 94 (106)
+..|+.|++|+.++|+.
T Consensus 132 l~~Y~~yl~~~~~~~~~ 148 (320)
T 3v5u_A 132 LILFIIYLRWTVKNGSA 148 (320)
T ss_dssp HHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999999986
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=94.80 E-value=0.09 Score=40.36 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=52.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCcCChhhHHHHHHHHHHHHHH
Q 036295 1 HMMRVVQQSLLGSILSNMLLVLGSAFFYGGLAVASVNSGLLMAVMGLLFPAVLHATHTELHFGKSELALSRFSSYIMLVA 80 (106)
Q Consensus 1 g~~~vVqasl~Gsil~nlLlvlGls~l~GGlr~a~~~s~l~la~i~lilP~~~~~~~~~~~~~~~~~~lS~~~avvll~~ 80 (106)
|+.|+.-+.++||-+.|.++++|.+.++..++-...-...++....++.. .+. + .+.+|.-+++++.+
T Consensus 224 g~~~laig~iiGS~ifn~~~v~g~~~li~p~~~~~~d~~~~l~~~~ll~~-~~~---~--------~~i~~~eG~~ll~~ 291 (320)
T 3v5u_A 224 NLGGMVLGNVIGSNIADIGGALAVGSLFMHLPAENVQMAVLVIMSLLLYL-FAK---Y--------SKIGRWQGILFLAL 291 (320)
T ss_dssp TCHHHHHHHHHHHHHHHHHTHHHHHHHHSCBCCCHHHHHHHHHHHHHHHH-HHH---H--------SCBSHHHHHHHHHH
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH-HHh---C--------CcCcHHHHHHHHHH
Confidence 56788888999999999999999999998665421111112222222222 221 1 11236779999999
Q ss_pred HHH-HHHHhccccc
Q 036295 81 YAA-YLYFQLKSQR 93 (106)
Q Consensus 81 Y~~-~L~fql~TH~ 93 (106)
|+. |+++..+.++
T Consensus 292 Y~~~y~~~~~~~~~ 305 (320)
T 3v5u_A 292 YIIAIASLRMGGGS 305 (320)
T ss_dssp HHHHHHHSCSSCC-
T ss_pred HHHHHHHHHHHhhc
Confidence 999 9998876544
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=37.11 E-value=1.2e+02 Score=22.37 Aligned_cols=54 Identities=7% Similarity=0.140 Sum_probs=28.4
Q ss_pred HHHHH-HHHHHHH--HHHHHHHHhhcc----CcCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 036295 36 VNSGL-LMAVMGL--LFPAVLHATHTE----LHFGKSELALSRFSSYIMLVAYAAYLYFQL 89 (106)
Q Consensus 36 ~~s~l-~la~i~l--ilP~~~~~~~~~----~~~~~~~~~lS~~~avvll~~Y~~~L~fql 89 (106)
.|..| .+++++. +.||+....++- -++.+....+-.+.+++.++.-+.+.+|.-
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFRR 335 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567 6666554 467887777652 122122233334455555555556666653
No 4
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=35.80 E-value=51 Score=17.45 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 036295 66 ELALSRFSSYIMLVAYAAYLYFQLKSQRQ 94 (106)
Q Consensus 66 ~~~lS~~~avvll~~Y~~~L~fql~TH~~ 94 (106)
.+..-.+.+++.+++=..||+++=++|.+
T Consensus 9 alt~i~gl~vif~~lg~tflywrgrrhhh 37 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGRRHHH 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCceeEEEccccccc
Confidence 35555677888888888999999888764
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=21.52 E-value=99 Score=18.46 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 036295 10 LLGSILSNMLLVLGSAFFYGG 30 (106)
Q Consensus 10 l~Gsil~nlLlvlGls~l~GG 30 (106)
+-|=|++-+|.++|+.++..|
T Consensus 19 igGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred ecchhhHHHHHHHHHHHHHcC
Confidence 457778888888888888776
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.54 E-value=83 Score=19.04 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 036295 10 LLGSILSNMLLVLGSAFFYGG 30 (106)
Q Consensus 10 l~Gsil~nlLlvlGls~l~GG 30 (106)
+-|=|++-+|+++|+.++..|
T Consensus 18 iGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcC
Confidence 346677777777777776655
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=20.12 E-value=1e+02 Score=18.71 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 036295 10 LLGSILSNMLLVLGSAFFYGGL 31 (106)
Q Consensus 10 l~Gsil~nlLlvlGls~l~GGl 31 (106)
+-|=|++-+|.++|+.++..|-
T Consensus 21 igGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred eccchhHHHHHHHHHHHHHcCc
Confidence 4577888889999998888763
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=17.74 E-value=1.5e+02 Score=22.23 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=22.9
Q ss_pred HHHHH-HHHH--HHHHHHHHHHHhhcc----CcCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 036295 36 VNSGL-LMAV--MGLLFPAVLHATHTE----LHFGKSELALSRFSSYIMLVAYAAYLYFQ 88 (106)
Q Consensus 36 ~~s~l-~la~--i~lilP~~~~~~~~~----~~~~~~~~~lS~~~avvll~~Y~~~L~fq 88 (106)
.|..| .+++ ..++.||+....++- -++.+....+-.+.++++++.-++|++|.
T Consensus 299 ~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fk 358 (363)
T 2iub_A 299 TNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFK 358 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556 5544 345557777665541 11111112222334444455555666664
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.04 E-value=1.6e+02 Score=16.05 Aligned_cols=7 Identities=0% Similarity=0.591 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 036295 10 LLGSILS 16 (106)
Q Consensus 10 l~Gsil~ 16 (106)
+.|.+.+
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3344444
No 10
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=15.44 E-value=85 Score=18.05 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccchh
Q 036295 16 SNMLLVLGSAFFYGGLAV 33 (106)
Q Consensus 16 ~nlLlvlGls~l~GGlr~ 33 (106)
+|.+|+-|..|++....+
T Consensus 14 Gn~~L~~Ga~FC~a~W~y 31 (56)
T 1v54_K 14 GNAVLASGATFCVAVWVY 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CceeeecchhhhHhhHhh
Done!