Query 036295
Match_columns 106
No_of_seqs 110 out of 802
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 19:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036295.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036295hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 22.8 53 0.0038 17.2 4.2 53 36-88 2-61 (64)
2 d1v54k_ f.23.5.1 (K:) Mitochon 14.8 44 0.0032 17.4 1.8 18 16-33 9-26 (49)
3 d1ejxb_ b.85.3.1 (B:) Urease, 13.0 27 0.002 21.0 0.7 18 87-104 34-51 (101)
4 d1nekd_ f.21.2.2 (D:) Succinat 12.0 1.1E+02 0.0079 17.6 3.4 27 67-94 14-40 (113)
5 d2fmla1 a.4.5.68 (A:205-268) H 10.7 26 0.0019 19.3 0.0 12 90-101 38-49 (64)
6 d1eysh2 f.23.10.1 (H:7-43) Pho 10.1 1E+02 0.0073 15.0 2.2 10 78-87 8-17 (37)
7 d4ubpb_ b.85.3.1 (B:) Urease, 9.8 40 0.0029 20.9 0.7 18 87-104 36-53 (122)
8 d2axtf1 f.23.38.1 (F:11-45) Cy 9.3 1.1E+02 0.0082 14.5 2.2 15 41-55 10-24 (35)
9 d1e9ya1 b.85.3.1 (A:106-238) U 9.2 43 0.0031 21.0 0.7 18 87-104 34-51 (133)
10 d1v54m_ f.23.7.1 (M:) Mitochon 7.4 61 0.0045 16.4 0.7 8 11-18 30-37 (43)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=22.81 E-value=53 Score=17.21 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=22.8
Q ss_pred HHHHH-HHHH--HHHHHHHHHHHhhcc----CcCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 036295 36 VNSGL-LMAV--MGLLFPAVLHATHTE----LHFGKSELALSRFSSYIMLVAYAAYLYFQ 88 (106)
Q Consensus 36 ~~s~l-~la~--i~lilP~~~~~~~~~----~~~~~~~~~lS~~~avvll~~Y~~~L~fq 88 (106)
.|..+ .+++ +-++.|++....++- .++.+.....-...++.+.+..+.+.+|.
T Consensus 2 ~N~~mk~lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~f~ 61 (64)
T d2iuba2 2 TNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFK 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455 4444 333444655554431 11112222334455666666666666664
No 2
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.78 E-value=44 Score=17.42 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhccchh
Q 036295 16 SNMLLVLGSAFFYGGLAV 33 (106)
Q Consensus 16 ~nlLlvlGls~l~GGlr~ 33 (106)
+|.+|+-|..|+.....+
T Consensus 9 Gn~vL~~Ga~fc~avW~y 26 (49)
T d1v54k_ 9 GNAVLASGATFCVAVWVY 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecccchhhhhhhh
Confidence 678888888887766555
No 3
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=12.96 E-value=27 Score=21.01 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=13.3
Q ss_pred Hhcccccccccccccccc
Q 036295 87 FQLKSQRQLRDQVNLIRF 104 (106)
Q Consensus 87 fql~TH~~~f~~~~~~~~ 104 (106)
.|..+|-|+|+.....+|
T Consensus 34 IQVGSH~HF~E~N~aL~F 51 (101)
T d1ejxb_ 34 IQVGSHYHFAEVNPALKF 51 (101)
T ss_dssp EEEETTSCGGGSCTTEES
T ss_pred eeeccccChHHcCccccc
Confidence 377899999987665544
No 4
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=12.03 E-value=1.1e+02 Score=17.64 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q 036295 67 LALSRFSSYIMLVAYAAYLYFQLKSQRQ 94 (106)
Q Consensus 67 ~~lS~~~avvll~~Y~~~L~fql~TH~~ 94 (106)
--..|.+|++++ .|..|+.+.+.++.+
T Consensus 14 W~~qRvSAv~l~-~l~~~~~~~~~~~~~ 40 (113)
T d1nekd_ 14 FILVRATAIVLT-LYIIYMVGFFATSGE 40 (113)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 456788888776 566777777766543
No 5
>d2fmla1 a.4.5.68 (A:205-268) Hypothetical protein EF2700, C-terminal domain {Enterococcus faecalis [TaxId: 1351]}
Probab=10.73 E-value=26 Score=19.34 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=9.2
Q ss_pred cccccccccccc
Q 036295 90 KSQRQLRDQVNL 101 (106)
Q Consensus 90 ~TH~~~f~~~~~ 101 (106)
|||+++|++...
T Consensus 38 Kth~~lf~evG~ 49 (64)
T d2fmla1 38 KAMTQYFEELGE 49 (64)
T ss_dssp HHHGGGBCCCCC
T ss_pred HHHHHHHHHHcc
Confidence 899999975443
No 6
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=10.09 E-value=1e+02 Score=15.00 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 036295 78 LVAYAAYLYF 87 (106)
Q Consensus 78 l~~Y~~~L~f 87 (106)
+.+|..|++|
T Consensus 8 l~ly~Fw~FF 17 (37)
T d1eysh2 8 ITIWAFWLFF 17 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 7
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=9.83 E-value=40 Score=20.89 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=13.2
Q ss_pred Hhcccccccccccccccc
Q 036295 87 FQLKSQRQLRDQVNLIRF 104 (106)
Q Consensus 87 fql~TH~~~f~~~~~~~~ 104 (106)
.|..+|-|+|+.....+|
T Consensus 36 IQVGSH~HF~E~N~aL~F 53 (122)
T d4ubpb_ 36 IQVGSHIHFVEVNKELLF 53 (122)
T ss_dssp EEEETTSCGGGSCTTEES
T ss_pred eeeccccChhhcCccccc
Confidence 377899999987665543
No 8
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.25 E-value=1.1e+02 Score=14.50 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 036295 41 LMAVMGLLFPAVLHA 55 (106)
Q Consensus 41 ~la~i~lilP~~~~~ 55 (106)
++|+=++.+|++|..
T Consensus 10 wlavh~l~vptvfFl 24 (35)
T d2axtf1 10 WVAVHTLAVPTIFFL 24 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhhcccchhhhH
Confidence 688889999998754
No 9
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=9.25 E-value=43 Score=21.02 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=13.3
Q ss_pred Hhcccccccccccccccc
Q 036295 87 FQLKSQRQLRDQVNLIRF 104 (106)
Q Consensus 87 fql~TH~~~f~~~~~~~~ 104 (106)
.|..+|-|+|+.....+|
T Consensus 34 IQVGSH~HF~E~N~aL~F 51 (133)
T d1e9ya1 34 VQIGSHFHFFEVNRCLDF 51 (133)
T ss_dssp EEEETTSCGGGSCTTEES
T ss_pred eeeccccChhhcCccccc
Confidence 377899999987665544
No 10
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.40 E-value=61 Score=16.38 Aligned_cols=8 Identities=25% Similarity=0.471 Sum_probs=5.9
Q ss_pred HHHHHHHH
Q 036295 11 LGSILSNM 18 (106)
Q Consensus 11 ~Gsil~nl 18 (106)
-|+||+|+
T Consensus 30 aGwVLshL 37 (43)
T d1v54m_ 30 AGWVLYHL 37 (43)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 47888875
Done!