Query 036296
Match_columns 433
No_of_seqs 239 out of 1540
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 11:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 5E-30 1.1E-34 219.0 6.3 103 87-189 2-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 1.9E-25 4.2E-30 191.3 14.1 109 49-161 6-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 1.9E-24 4.1E-29 184.5 13.4 108 49-160 6-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.9 3.9E-21 8.5E-26 163.1 11.6 107 218-341 1-108 (110)
5 cd01098 PAN_AP_plant Plant PAN 99.4 8.8E-13 1.9E-17 105.5 7.2 70 351-421 14-84 (84)
6 PF08276 PAN_2: PAN-like domai 99.3 1.9E-12 4.1E-17 99.7 5.4 57 350-406 6-66 (66)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.2 2E-11 4.3E-16 97.5 5.4 64 352-420 12-80 (80)
8 smart00108 B_lectin Bulb-type 98.6 1.2E-07 2.6E-12 80.7 8.6 85 104-220 23-111 (114)
9 cd00028 B_lectin Bulb-type man 98.6 1.7E-07 3.8E-12 80.0 8.5 86 104-221 23-113 (116)
10 smart00473 PAN_AP divergent su 98.4 1.2E-06 2.5E-11 68.4 6.8 67 353-419 8-77 (78)
11 PF01453 B_lectin: D-mannose b 98.3 1.9E-05 4.1E-10 67.4 12.4 100 51-162 12-114 (114)
12 cd01100 APPLE_Factor_XI_like S 97.8 2.8E-05 6E-10 60.8 4.1 49 355-403 10-58 (73)
13 smart00223 APPLE APPLE domain. 95.0 0.031 6.6E-07 44.5 3.9 49 354-402 6-57 (79)
14 PF14295 PAN_4: PAN domain; PD 93.9 0.053 1.1E-06 38.5 2.7 32 369-400 15-51 (51)
15 PF00024 PAN_1: PAN domain Thi 92.6 0.2 4.4E-06 38.5 4.5 32 370-401 23-55 (79)
16 smart00605 CW CW domain. 89.5 1.2 2.6E-05 36.2 6.3 54 369-423 21-77 (94)
17 PF08277 PAN_3: PAN-like domai 86.4 1.7 3.7E-05 33.1 5.1 50 369-420 19-71 (71)
18 cd01099 PAN_AP_HGF Subfamily o 83.6 1.6 3.4E-05 34.5 3.8 33 369-401 24-58 (80)
19 KOG4649 PQQ (pyrrolo-quinoline 63.7 32 0.0007 33.8 7.7 44 87-130 169-218 (354)
20 PF13360 PQQ_2: PQQ-like domai 61.6 36 0.00078 31.4 7.8 55 103-157 37-102 (238)
21 cd00053 EGF Epidermal growth f 60.7 8 0.00017 24.2 2.2 30 313-342 2-32 (36)
22 PF14269 Arylsulfotran_2: Aryl 56.1 1.5E+02 0.0033 29.4 11.5 11 136-146 265-275 (299)
23 PF07645 EGF_CA: Calcium-bindi 53.0 4.1 8.8E-05 28.0 -0.2 30 311-340 3-34 (42)
24 PF13360 PQQ_2: PQQ-like domai 52.7 25 0.00054 32.5 5.0 49 109-157 1-62 (238)
25 PF01436 NHL: NHL repeat; Int 50.8 23 0.00049 22.0 3.0 22 103-124 5-26 (28)
26 PRK11138 outer membrane biogen 50.1 46 0.00099 34.0 6.9 55 103-157 121-186 (394)
27 PRK11138 outer membrane biogen 49.0 46 0.00099 34.0 6.7 19 139-157 342-361 (394)
28 smart00179 EGF_CA Calcium-bind 47.8 15 0.00032 23.8 1.9 30 311-340 3-33 (39)
29 TIGR03300 assembly_YfgL outer 47.7 69 0.0015 32.3 7.7 49 108-156 72-130 (377)
30 cd05845 Ig2_L1-CAM_like Second 44.3 35 0.00075 28.0 4.0 31 87-117 34-64 (95)
31 cd00054 EGF_CA Calcium-binding 36.3 29 0.00062 21.9 1.9 31 311-341 3-34 (38)
32 TIGR03300 assembly_YfgL outer 34.9 1.7E+02 0.0038 29.3 8.3 71 87-157 85-171 (377)
33 PF07354 Sp38: Zona-pellucida- 33.8 48 0.001 32.4 3.7 31 87-117 13-43 (271)
34 PF01683 EB: EB module; Inter 31.9 39 0.00084 24.0 2.1 28 311-341 20-47 (52)
35 cd00216 PQQ_DH Dehydrogenases 31.8 1.3E+02 0.0027 32.0 6.9 71 87-157 39-136 (488)
36 PF13570 PQQ_3: PQQ-like domai 29.4 62 0.0013 21.4 2.7 8 121-128 2-9 (40)
37 TIGR03066 Gem_osc_para_1 Gemma 29.0 3.1E+02 0.0068 23.3 7.4 52 101-153 34-104 (111)
38 PF12458 DUF3686: ATPase invol 28.8 1.5E+02 0.0033 31.1 6.4 58 50-119 310-368 (448)
39 cd05852 Ig5_Contactin-1 Fifth 28.6 2E+02 0.0042 21.8 5.8 31 87-118 16-46 (73)
40 PF07974 EGF_2: EGF-like domai 27.0 46 0.00099 21.6 1.6 23 317-340 6-28 (32)
41 PF05935 Arylsulfotrans: Aryls 26.5 62 0.0013 34.4 3.5 53 110-163 127-187 (477)
42 PF06006 DUF905: Bacterial pro 26.0 65 0.0014 24.9 2.5 19 144-162 35-53 (70)
43 smart00564 PQQ beta-propeller 24.0 1.2E+02 0.0027 18.6 3.3 19 108-126 13-32 (33)
44 COG1520 FOG: WD40-like repeat 22.8 3.1E+02 0.0067 27.7 7.6 71 87-158 131-226 (370)
45 PF09064 Tme5_EGF_like: Thromb 21.6 53 0.0011 21.8 1.1 17 324-340 11-27 (34)
46 PF07172 GRP: Glycine rich pro 21.6 76 0.0016 26.1 2.3 13 1-13 1-13 (95)
47 PHA02887 EGF-like protein; Pro 21.2 91 0.002 26.7 2.7 29 311-340 84-117 (126)
48 PLN00033 photosystem II stabil 20.2 2.8E+02 0.006 28.9 6.7 46 110-155 258-305 (398)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.96 E-value=5e-30 Score=219.01 Aligned_cols=103 Identities=48% Similarity=0.777 Sum_probs=76.1
Q ss_pred ceEEEEeCCCCCCCC---CcEEEEecCCcEEEEccCCeEEEec-cCCCCc--eeEEEEeeCCCeeeecCCCeeEEeeccC
Q 036296 87 FRWVWEANRGKPVRE---NATFSLGTDGNLVLAEADGTVVWQT-NTANKG--VVGFKLLSNGNMVLHDSKGNFIWQSFDY 160 (433)
Q Consensus 87 ~t~vW~ANr~~pv~~---~~~l~l~~~G~Lvl~~~~~~~vWst-~~~~~~--~~~~~Lld~GNlvl~~~~~~~lWqSFD~ 160 (433)
+||||+|||++|+.. ..+|.|+.||+|+|+|..++++|++ ++.+.+ ...|+|+|+|||||+|..+.+|||||||
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~ 81 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFDY 81 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTTS
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecCC
Confidence 589999999999943 4899999999999999999999999 666554 6789999999999999999999999999
Q ss_pred CCcccccccceeec----ceeeEEeeCCCCCCC
Q 036296 161 PTDTLLVGQSLRAG----GVAKLVSRASEKENI 189 (433)
Q Consensus 161 PTDTLLPgq~L~~~----g~~~L~S~~S~~dps 189 (433)
||||+||+|+|+.+ ....|+||++.+|||
T Consensus 82 ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 82 PTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred CccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 99999999999753 113599999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=1.9e-25 Score=191.26 Aligned_cols=109 Identities=40% Similarity=0.682 Sum_probs=96.2
Q ss_pred ceeEEeecCCeEEEEEEeCCCCC-eEEEEEEeecCCCCCceEEEEeCCCCCCCCCcEEEEecCCcEEEEccCCeEEEecc
Q 036296 49 DYRMLGIFNAPFQLGFYNTTPNA-YTLALRWGLTRQEPFFRWVWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTN 127 (433)
Q Consensus 49 ~~~~l~s~~g~F~lGF~~~~~~~-~~l~Iw~~~~~~~~~~t~vW~ANr~~pv~~~~~l~l~~~G~Lvl~~~~~~~vWst~ 127 (433)
.++.|+|.++.|++|||.+.... ++++|||.... .++||.|||+.|....++|.|+.||+|+|+|.+|.++|+++
T Consensus 6 ~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~ 81 (116)
T cd00028 6 SGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS----RTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSN 81 (116)
T ss_pred CCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC----CeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEec
Confidence 35778899999999999986555 89999997642 47899999999966678999999999999999999999999
Q ss_pred CCC-CceeEEEEeeCCCeeeecCCCeeEEeeccCC
Q 036296 128 TAN-KGVVGFKLLSNGNMVLHDSKGNFIWQSFDYP 161 (433)
Q Consensus 128 ~~~-~~~~~~~Lld~GNlvl~~~~~~~lWqSFD~P 161 (433)
+.+ .+...|+|+|+|||||++.++.+||||||||
T Consensus 82 ~~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~P 116 (116)
T cd00028 82 TTRVNGNYVLVLLDDGNLVLYDSDGNFLWQSFDYP 116 (116)
T ss_pred ccCCCCceEEEEeCCCCEEEECCCCCEEEcCCCCC
Confidence 876 5567799999999999999999999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.92 E-value=1.9e-24 Score=184.51 Aligned_cols=108 Identities=42% Similarity=0.696 Sum_probs=95.9
Q ss_pred ceeEEeecCCeEEEEEEeCCCCCeEEEEEEeecCCCCCceEEEEeCCCCCCCCCcEEEEecCCcEEEEccCCeEEEeccC
Q 036296 49 DYRMLGIFNAPFQLGFYNTTPNAYTLALRWGLTRQEPFFRWVWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNT 128 (433)
Q Consensus 49 ~~~~l~s~~g~F~lGF~~~~~~~~~l~Iw~~~~~~~~~~t~vW~ANr~~pv~~~~~l~l~~~G~Lvl~~~~~~~vWst~~ 128 (433)
+++.|+|+++.|++|||.+....++++|||...+ .++||+|||+.|+..++.|.|++||+|+|+|.+|.++|++++
T Consensus 6 ~~~~l~s~~~~f~~G~~~~~~q~dgnlV~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~t 81 (114)
T smart00108 6 SGQTLVSGNSLFELGFFTLIMQNDYNLILYKSSS----RTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNT 81 (114)
T ss_pred CCCEEecCCCcEeeeccccCCCCCEEEEEEECCC----CcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEecc
Confidence 4578899999999999998666788999997642 468999999999887789999999999999999999999998
Q ss_pred C-CCceeEEEEeeCCCeeeecCCCeeEEeeccC
Q 036296 129 A-NKGVVGFKLLSNGNMVLHDSKGNFIWQSFDY 160 (433)
Q Consensus 129 ~-~~~~~~~~Lld~GNlvl~~~~~~~lWqSFD~ 160 (433)
. +.+...|+|+|+|||||++.++++|||||||
T Consensus 82 ~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~ 114 (114)
T smart00108 82 TGANGNYVLVLLDDGNLVIYDSDGNFLWQSFDY 114 (114)
T ss_pred cCCCCceEEEEeCCCCEEEECCCCCEEeCCCCC
Confidence 6 5556779999999999999999999999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.85 E-value=3.9e-21 Score=163.11 Aligned_cols=107 Identities=23% Similarity=0.378 Sum_probs=87.6
Q ss_pred EecCCccccccCCeeeEEEecCCCcccceeeEEEEeecccc-eEEEeecCCCeEEEEEEccCCeEEEEEecCCCCCCCce
Q 036296 218 FTSSEWFTVREGSLENITFTSEPETEEAFAYHLSLDSSVAG-VRLARPRYNSTISLLRLEMDGNLRIYTYDERVDWGPTE 296 (433)
Q Consensus 218 w~sg~w~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~rl~Ld~dG~lr~y~w~~~~~~~~W~ 296 (433)
||+|+|+| ..|++.|+|.....+.+.|..++.. ++.+...+.+.++|++||++|++|+|.|.+ ..++|.
T Consensus 1 wrsG~WnG--------~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~--~~~~W~ 70 (110)
T PF00954_consen 1 WRSGPWNG--------QRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNE--STQSWS 70 (110)
T ss_pred CCccccCC--------eEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEec--CCCcEE
Confidence 89999976 5899999987555566666543333 345555567789999999999999999987 468999
Q ss_pred EEEEeeccCCCCCCCCCCCccCCCCCcccccCCCCCCCCCCCCCC
Q 036296 297 KTFTLFDRDSDWEISECQLPERCGKFGLCDDNQCVACPMGKGLLG 341 (433)
Q Consensus 297 ~~~~~~~~~~~p~~~~Cd~~g~CG~~g~C~~~~~~~C~c~~g~~~ 341 (433)
+.|++ |. ++||+|+.||+||+|+.++.+.|.|++||..
T Consensus 71 ~~~~~------p~-d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 71 VFWSA------PK-DQCDVYGFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred EEEEe------cc-cCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence 99976 55 9999999999999999888889999999963
No 5
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.38 E-value=8.8e-13 Score=105.52 Aligned_cols=70 Identities=19% Similarity=0.444 Sum_probs=56.1
Q ss_pred eeeeeeeeccccceeccCCCCHHHHHHHhhcCCCeEEEEecCCCcceEEcc-ccCcceeeCCCCceEEEEee
Q 036296 351 LLLVEGVNHFMSKYTRGATTKVEDCGKKCTSDCKCLGYFYHQETSKCWIAY-DLKTLTKFPNSTHVGFIKVP 421 (433)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~~~s~~~C~~~CL~nCsC~Ay~y~~~~~~C~~~~-~L~~~~~~~~~~~~~yiKv~ 421 (433)
.++++++++|...+.. ..+++++|+++||+||+|+||+|.+++++|++|. .+.+.+.....+.++||||+
T Consensus 14 f~~~~~~~~~~~~~~~-~~~s~~~C~~~Cl~nCsC~a~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~yiKv~ 84 (84)
T cd01098 14 FLKLPDVKLPDNASAI-TAISLEECREACLSNCSCTAYAYNNGSGGCLLWNGLLNNLRSLSSGGGTLYLRLA 84 (84)
T ss_pred EEEeCCeeCCCchhhh-ccCCHHHHHHHHhcCCCcceeeecCCCCeEEEEeceecceEeecCCCcEEEEEeC
Confidence 3677888888765443 5589999999999999999999987678999996 56666654445689999985
No 6
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.32 E-value=1.9e-12 Score=99.72 Aligned_cols=57 Identities=26% Similarity=0.550 Sum_probs=46.8
Q ss_pred eeeeeeeeeccccceec-cCCCCHHHHHHHhhcCCCeEEEEecC--CCcceEEcc-ccCcc
Q 036296 350 KLLLVEGVNHFMSKYTR-GATTKVEDCGKKCTSDCKCLGYFYHQ--ETSKCWIAY-DLKTL 406 (433)
Q Consensus 350 ~~~~~~~v~~~~~~~~~-~~~~s~~~C~~~CL~nCsC~Ay~y~~--~~~~C~~~~-~L~~~ 406 (433)
..++++++++|+..... ..+.++++|+++||+||||+||+|.+ ++++|++|. +|.|+
T Consensus 6 ~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 6 GFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVDL 66 (66)
T ss_pred EEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeecC
Confidence 44789999998875433 35589999999999999999999975 568999995 78764
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.20 E-value=2e-11 Score=97.46 Aligned_cols=64 Identities=11% Similarity=0.259 Sum_probs=51.4
Q ss_pred eeeeeeeccccceeccCCCCHHHHHHHhhc---CCCeEEEEecCCCcceEEcc-cc-CcceeeCCCCceEEEEe
Q 036296 352 LLVEGVNHFMSKYTRGATTKVEDCGKKCTS---DCKCLGYFYHQETSKCWIAY-DL-KTLTKFPNSTHVGFIKV 420 (433)
Q Consensus 352 ~~~~~v~~~~~~~~~~~~~s~~~C~~~CL~---nCsC~Ay~y~~~~~~C~~~~-~L-~~~~~~~~~~~~~yiKv 420 (433)
+++.++..|++.. .++++|+++|++ ||||+||+|...+.+|++|. +| .++++..+++.++|||.
T Consensus 12 l~~~~~klpd~~~-----~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~~l~~d~~~~~~~g~~Ly~r~ 80 (80)
T cd00129 12 LIKIALKIKTTKA-----NTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPFNSMSGVRKEFSHGFDLYENK 80 (80)
T ss_pred EEeecccCCcccc-----cCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecCcchhhHHhccCCCceeEeEC
Confidence 4455566554322 689999999999 99999999976567899996 78 89988877789999983
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.65 E-value=1.2e-07 Score=80.74 Aligned_cols=85 Identities=33% Similarity=0.582 Sum_probs=61.5
Q ss_pred EEEEecCCcEEEEccC-CeEEEeccCCCC--ceeEEEEeeCCCeeeecCCCeeEEeeccCCCcccccccceeecceeeEE
Q 036296 104 TFSLGTDGNLVLAEAD-GTVVWQTNTANK--GVVGFKLLSNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRAGGVAKLV 180 (433)
Q Consensus 104 ~l~l~~~G~Lvl~~~~-~~~vWst~~~~~--~~~~~~Lld~GNlvl~~~~~~~lWqSFD~PTDTLLPgq~L~~~g~~~L~ 180 (433)
++.++.||+||+++.. +.+||++++..+ ....+.|.++|||||++.++.++|+|= |
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~---t------------------ 81 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSN---T------------------ 81 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEec---c------------------
Confidence 4566789999999865 579999998543 235689999999999998889999981 1
Q ss_pred eeCCCCCCCCcceEEEecCCc-cceeeccCCCCCCeeEEec
Q 036296 181 SRASEKENIDGPYSFLMEPKR-LAMYYKSSNSPRPVLYFTS 220 (433)
Q Consensus 181 S~~S~~dps~G~ysl~l~~~g-~~~~~~~~~~~~~~~Yw~s 220 (433)
+ ...|.|.+.|+++| ++++ ... + .+.|.+
T Consensus 82 ~------~~~~~~~~~L~ddGnlvl~-~~~-~---~~~W~S 111 (114)
T smart00108 82 T------GANGNYVLVLLDDGNLVIY-DSD-G---NFLWQS 111 (114)
T ss_pred c------CCCCceEEEEeCCCCEEEE-CCC-C---CEEeCC
Confidence 0 13456888998888 6554 322 1 356765
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.61 E-value=1.7e-07 Score=80.01 Aligned_cols=86 Identities=28% Similarity=0.536 Sum_probs=62.1
Q ss_pred EEEEec-CCcEEEEccC-CeEEEeccCCC--CceeEEEEeeCCCeeeecCCCeeEEeeccCCCcccccccceeecceeeE
Q 036296 104 TFSLGT-DGNLVLAEAD-GTVVWQTNTAN--KGVVGFKLLSNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRAGGVAKL 179 (433)
Q Consensus 104 ~l~l~~-~G~Lvl~~~~-~~~vWst~~~~--~~~~~~~Lld~GNlvl~~~~~~~lWqSFD~PTDTLLPgq~L~~~g~~~L 179 (433)
++.++. ||+||+++.. +.++|++++.. .....+.|.++|||||++.++.++|+|=-
T Consensus 23 ~~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~~-------------------- 82 (116)
T cd00028 23 KLIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNT-------------------- 82 (116)
T ss_pred cCCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEecc--------------------
Confidence 345566 9999999764 57999999864 34566899999999999988999999820
Q ss_pred EeeCCCCCCCCcceEEEecCCc-cceeeccCCCCCCeeEEecC
Q 036296 180 VSRASEKENIDGPYSFLMEPKR-LAMYYKSSNSPRPVLYFTSS 221 (433)
Q Consensus 180 ~S~~S~~dps~G~ysl~l~~~g-~~~~~~~~~~~~~~~Yw~sg 221 (433)
+ ...+.+.+.|+++| ++++-.. + .+.|.+.
T Consensus 83 -~------~~~~~~~~~L~ddGnlvl~~~~--~---~~~W~Sf 113 (116)
T cd00028 83 -T------RVNGNYVLVLLDDGNLVLYDSD--G---NFLWQSF 113 (116)
T ss_pred -c------CCCCceEEEEeCCCCEEEECCC--C---CEEEcCC
Confidence 0 02467888998888 6654321 1 4567764
No 10
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.36 E-value=1.2e-06 Score=68.40 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=47.5
Q ss_pred eeeeeeccccceeccCCCCHHHHHHHhhc-CCCeEEEEecCCCcceEEcc--ccCcceeeCCCCceEEEE
Q 036296 353 LVEGVNHFMSKYTRGATTKVEDCGKKCTS-DCKCLGYFYHQETSKCWIAY--DLKTLTKFPNSTHVGFIK 419 (433)
Q Consensus 353 ~~~~v~~~~~~~~~~~~~s~~~C~~~CL~-nCsC~Ay~y~~~~~~C~~~~--~L~~~~~~~~~~~~~yiK 419 (433)
+++++.++..........++++|++.|++ +|+|.||.|...++.|++|. .+.+.....+.+.++|.|
T Consensus 8 ~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~l~~~~~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 8 RLPNTKLPGFSRIVISVASLEECASKCLNSNCSCRSFTYNNGTKGCLLWSESSLGDARLFPSGGVDLYEK 77 (78)
T ss_pred EecCccCCCCcceeEcCCCHHHHHHHhCCCCCceEEEEEcCCCCEEEEeeCCccccceecccCCceeEEe
Confidence 45555554332222234799999999999 99999999976567999987 466665445556677776
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.26 E-value=1.9e-05 Score=67.42 Aligned_cols=100 Identities=22% Similarity=0.315 Sum_probs=64.3
Q ss_pred eEEeecCCeEEEEEEeCCCCCeEEEEEEeecCCCCCceEEEEe-CCCCCCCCCcEEEEecCCcEEEEccCCeEEEeccCC
Q 036296 51 RMLGIFNAPFQLGFYNTTPNAYTLALRWGLTRQEPFFRWVWEA-NRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTA 129 (433)
Q Consensus 51 ~~l~s~~g~F~lGF~~~~~~~~~l~Iw~~~~~~~~~~t~vW~A-Nr~~pv~~~~~l~l~~~G~Lvl~~~~~~~vWst~~~ 129 (433)
+.+.+.+|.+.|-|.. +++ |.| |... .+++|.. +........+.+.|++||||||+|..+.++|++..
T Consensus 12 ~p~~~~s~~~~L~l~~--dGn--Lvl-~~~~-----~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~- 80 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQS--DGN--LVL-YDSN-----GSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFD- 80 (114)
T ss_dssp EEEEECETTEEEEEET--TSE--EEE-EETT-----TEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTT-
T ss_pred cccccccccccceECC--CCe--EEE-EcCC-----CCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecC-
Confidence 4454444778888875 333 333 3221 3569999 44443334689999999999999999999999943
Q ss_pred CCceeEEEEee--CCCeeeecCCCeeEEeeccCCC
Q 036296 130 NKGVVGFKLLS--NGNMVLHDSKGNFIWQSFDYPT 162 (433)
Q Consensus 130 ~~~~~~~~Lld--~GNlvl~~~~~~~lWqSFD~PT 162 (433)
.+.-+.+.+++ .||++ +.....+.|.|=+.|+
T Consensus 81 ~ptdt~L~~q~l~~~~~~-~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 81 YPTDTLLPGQKLGDGNVT-GKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SSS-EEEEEET--TSEEE-EESTSSEEEESS----
T ss_pred CCccEEEeccCcccCCCc-cccceEEeECCCCCCC
Confidence 23344466777 88888 6656779999876663
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.77 E-value=2.8e-05 Score=60.84 Aligned_cols=49 Identities=22% Similarity=0.513 Sum_probs=38.1
Q ss_pred eeeeccccceeccCCCCHHHHHHHhhcCCCeEEEEecCCCcceEEcccc
Q 036296 355 EGVNHFMSKYTRGATTKVEDCGKKCTSDCKCLGYFYHQETSKCWIAYDL 403 (433)
Q Consensus 355 ~~v~~~~~~~~~~~~~s~~~C~~~CL~nCsC~Ay~y~~~~~~C~~~~~L 403 (433)
++++++..+.......+.++|+++|+.+|+|.||.|....+.|+++...
T Consensus 10 ~~~~~~g~d~~~~~~~s~~~Cq~~C~~~~~C~afT~~~~~~~C~lk~~~ 58 (73)
T cd01100 10 SNVDFRGGDLSTVFASSAEQCQAACTADPGCLAFTYNTKSKKCFLKSSE 58 (73)
T ss_pred CCCccccCCcceeecCCHHHHHHHcCCCCCceEEEEECCCCeEEcccCC
Confidence 4566665444333346899999999999999999998777899998754
No 13
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=95.03 E-value=0.031 Score=44.53 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=39.7
Q ss_pred eeeeeccccceeccCCCCHHHHHHHhhcCCCeEEEEecCCCc---ceEEccc
Q 036296 354 VEGVNHFMSKYTRGATTKVEDCGKKCTSDCKCLGYFYHQETS---KCWIAYD 402 (433)
Q Consensus 354 ~~~v~~~~~~~~~~~~~s~~~C~~~CL~nCsC~Ay~y~~~~~---~C~~~~~ 402 (433)
..++|++..+.......+.++|++.|..+=.|.||.|..... .|+++..
T Consensus 6 ~~~~df~G~Dl~~~~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRGSDINTVYVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccCceeeeeecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 356777777665555679999999999999999999986556 8999864
No 14
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=93.88 E-value=0.053 Score=38.50 Aligned_cols=32 Identities=19% Similarity=0.753 Sum_probs=17.9
Q ss_pred CCCHHHHHHHhhcCCCeEEEEecC-----CCcceEEc
Q 036296 369 TTKVEDCGKKCTSDCKCLGYFYHQ-----ETSKCWIA 400 (433)
Q Consensus 369 ~~s~~~C~~~CL~nCsC~Ay~y~~-----~~~~C~~~ 400 (433)
..++++|.++|..+=.|.+|.|.. ..+.|++|
T Consensus 15 ~~s~~~C~~~C~~~~~C~~~~~~~~~~~~~~~~C~LK 51 (51)
T PF14295_consen 15 ASSPEECQAACAADPGCQAFTFNPPGCPSSSGRCYLK 51 (51)
T ss_dssp ---HHHHHHHHHTSTT--EEEEETTEE----------
T ss_pred CCCHHHHHHHccCCCCCCEEEEECCCcccccccccCC
Confidence 468999999999999999999975 45678764
No 15
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=92.62 E-value=0.2 Score=38.55 Aligned_cols=32 Identities=19% Similarity=0.754 Sum_probs=29.3
Q ss_pred CCHHHHHHHhhcCCC-eEEEEecCCCcceEEcc
Q 036296 370 TKVEDCGKKCTSDCK-CLGYFYHQETSKCWIAY 401 (433)
Q Consensus 370 ~s~~~C~~~CL~nCs-C~Ay~y~~~~~~C~~~~ 401 (433)
.++++|.++|+.+=. |.+|.|....+.|.+..
T Consensus 23 ~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~L~~ 55 (79)
T PF00024_consen 23 PSLEECAQLCLNEPRRCKSFNYDPSSKTCYLSS 55 (79)
T ss_dssp SSHHHHHHHHHHSTT-ESEEEEETTTTEEEEEC
T ss_pred CCHHHHHhhcCcCcccCCeEEEECCCCEEEEcC
Confidence 599999999999999 99999987778999874
No 16
>smart00605 CW CW domain.
Probab=89.45 E-value=1.2 Score=36.23 Aligned_cols=54 Identities=22% Similarity=0.446 Sum_probs=39.4
Q ss_pred CCCHHHHHHHhhcCCCeEEEEecCCCcceEEcc--ccCcceeeCC-CCceEEEEeeCC
Q 036296 369 TTKVEDCGKKCTSDCKCLGYFYHQETSKCWIAY--DLKTLTKFPN-STHVGFIKVPNN 423 (433)
Q Consensus 369 ~~s~~~C~~~CL~nCsC~Ay~y~~~~~~C~~~~--~L~~~~~~~~-~~~~~yiKv~~~ 423 (433)
..+.++|.+.|..+..|+.+..+. ...|.+.. .+..+++... .+..+=+|+...
T Consensus 21 ~~sw~~Ci~~C~~~~~Cvlay~~~-~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~~ 77 (94)
T smart00605 21 TLSWDECIQKCYEDSNCVLAYGNS-SETCYLFSYGTVLTVKKLSSSSGKKVAFKVSTD 77 (94)
T ss_pred CCCHHHHHHHHhCCCceEEEecCC-CCceEEEEcCCeEEEEEccCCCCcEEEEEEeCC
Confidence 468999999999999999775543 46898853 5666766543 456677888643
No 17
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=86.35 E-value=1.7 Score=33.09 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=36.1
Q ss_pred CCCHHHHHHHhhcCCCeEEEEecCCCcceEEcc--ccCcceeeC-CCCceEEEEe
Q 036296 369 TTKVEDCGKKCTSDCKCLGYFYHQETSKCWIAY--DLKTLTKFP-NSTHVGFIKV 420 (433)
Q Consensus 369 ~~s~~~C~~~CL~nCsC~Ay~y~~~~~~C~~~~--~L~~~~~~~-~~~~~~yiKv 420 (433)
..+.++|-+.|..+=.|.++.++ ...|.+.. .+..+++.. ..+..+-+|+
T Consensus 19 ~~sw~~Cv~~C~~~~~C~la~~~--~~~C~~y~~~~i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 19 NTSWDDCVQKCYNDENCVLAYFD--SGKCYLYNYGSISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred CCCHHHHhHHhCCCCEEEEEEeC--CCCEEEEEcCCEEEEEEeecCCCeEEEEEC
Confidence 46899999999999999998887 56899863 555555543 3344445553
No 18
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=83.59 E-value=1.6 Score=34.54 Aligned_cols=33 Identities=21% Similarity=0.687 Sum_probs=28.9
Q ss_pred CCCHHHHHHHhhc--CCCeEEEEecCCCcceEEcc
Q 036296 369 TTKVEDCGKKCTS--DCKCLGYFYHQETSKCWIAY 401 (433)
Q Consensus 369 ~~s~~~C~~~CL~--nCsC~Ay~y~~~~~~C~~~~ 401 (433)
..++++|.++|++ +=.|.++.|......|.+-.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~ 58 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNYKSKECILSD 58 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeC
Confidence 3689999999999 88999999987778999854
No 19
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.68 E-value=32 Score=33.76 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=33.5
Q ss_pred ceEEEEeCCCCCCCCC-----cEEEE-ecCCcEEEEccCCeEEEeccCCC
Q 036296 87 FRWVWEANRGKPVREN-----ATFSL-GTDGNLVLAEADGTVVWQTNTAN 130 (433)
Q Consensus 87 ~t~vW~ANr~~pv~~~-----~~l~l-~~~G~Lvl~~~~~~~vWst~~~~ 130 (433)
.+..|.|.|..|+-.+ ....+ +-||+|.-.|+.|+.||...+.+
T Consensus 169 ~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 169 STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred cceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 4789999999998653 23333 56999998999999999776543
No 20
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=61.58 E-value=36 Score=31.40 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=35.5
Q ss_pred cEEEE-ecCCcEEEEcc-CCeEEEeccCCCCc--e-----eEEE-EeeCCCeeeec-CCCeeEEee
Q 036296 103 ATFSL-GTDGNLVLAEA-DGTVVWQTNTANKG--V-----VGFK-LLSNGNMVLHD-SKGNFIWQS 157 (433)
Q Consensus 103 ~~l~l-~~~G~Lvl~~~-~~~~vWst~~~~~~--~-----~~~~-Lld~GNlvl~~-~~~~~lWqS 157 (433)
..+.+ +.+|.|+.+|. +|.++|+....... . ..+. ...+|.|+..| .+|+++|+.
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeee
Confidence 33444 58899999996 89999998863321 0 0112 22345566667 678999995
No 21
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=60.67 E-value=8 Score=24.25 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=20.7
Q ss_pred CCCccCCCCCcccccC-CCCCCCCCCCCCCC
Q 036296 313 CQLPERCGKFGLCDDN-QCVACPMGKGLLGW 342 (433)
Q Consensus 313 Cd~~g~CG~~g~C~~~-~~~~C~c~~g~~~~ 342 (433)
|.....|..++.|... ....|.|+.||...
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4434568888889753 34679999998654
No 22
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=56.11 E-value=1.5e+02 Score=29.45 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=7.4
Q ss_pred EEEeeCCCeee
Q 036296 136 FKLLSNGNMVL 146 (433)
Q Consensus 136 ~~Lld~GNlvl 146 (433)
+++|.+||..+
T Consensus 265 ~Q~L~nGn~li 275 (299)
T PF14269_consen 265 AQRLPNGNVLI 275 (299)
T ss_pred ceECCCCCEEE
Confidence 56677777666
No 23
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=52.97 E-value=4.1 Score=27.96 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=23.1
Q ss_pred CCCCCc-cCCCCCcccccC-CCCCCCCCCCCC
Q 036296 311 SECQLP-ERCGKFGLCDDN-QCVACPMGKGLL 340 (433)
Q Consensus 311 ~~Cd~~-g~CG~~g~C~~~-~~~~C~c~~g~~ 340 (433)
|+|... ..|..++.|... ..-.|.|++||.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 788874 479999999653 445699999985
No 24
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=52.72 E-value=25 Score=32.52 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=31.3
Q ss_pred cCCcEEEEcc-CCeEEEeccCCC--Ccee--------EEEE-eeCCCeeeecC-CCeeEEee
Q 036296 109 TDGNLVLAEA-DGTVVWQTNTAN--KGVV--------GFKL-LSNGNMVLHDS-KGNFIWQS 157 (433)
Q Consensus 109 ~~G~Lvl~~~-~~~~vWst~~~~--~~~~--------~~~L-ld~GNlvl~~~-~~~~lWqS 157 (433)
++|.|..+|. +|..+|+.+... .... .+.. ..+|+|+.+|. +|+++|+-
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEe
Confidence 3688888886 899999986421 1111 0111 36677777775 78899986
No 25
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=50.79 E-value=23 Score=21.97 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.1
Q ss_pred cEEEEecCCcEEEEccCCeEEE
Q 036296 103 ATFSLGTDGNLVLAEADGTVVW 124 (433)
Q Consensus 103 ~~l~l~~~G~Lvl~~~~~~~vW 124 (433)
.-+.+..+|+|++.|..+.-||
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEE
Confidence 4577778899988887665554
No 26
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=50.12 E-value=46 Score=34.02 Aligned_cols=55 Identities=27% Similarity=0.465 Sum_probs=35.4
Q ss_pred cEEEE-ecCCcEEEEcc-CCeEEEeccCCCC----ce----eEEEEeeCCCeeeecC-CCeeEEee
Q 036296 103 ATFSL-GTDGNLVLAEA-DGTVVWQTNTANK----GV----VGFKLLSNGNMVLHDS-KGNFIWQS 157 (433)
Q Consensus 103 ~~l~l-~~~G~Lvl~~~-~~~~vWst~~~~~----~~----~~~~Lld~GNlvl~~~-~~~~lWqS 157 (433)
..+.+ +.+|.|+-+|. +|+++|+....+. ++ ....-..+|.|+-+|. +|+++|+-
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 34445 45788888885 6999999876431 11 1112234567777775 68999986
No 27
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=49.01 E-value=46 Score=34.02 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=10.4
Q ss_pred eeCCCeeeecC-CCeeEEee
Q 036296 139 LSNGNMVLHDS-KGNFIWQS 157 (433)
Q Consensus 139 ld~GNlvl~~~-~~~~lWqS 157 (433)
.++|.|...|. +|+++|+-
T Consensus 342 ~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 342 DSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred eCCCEEEEEECCCCCEEEEE
Confidence 34566655553 45666654
No 28
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=47.77 E-value=15 Score=23.81 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=21.9
Q ss_pred CCCCCccCCCCCcccccC-CCCCCCCCCCCC
Q 036296 311 SECQLPERCGKFGLCDDN-QCVACPMGKGLL 340 (433)
Q Consensus 311 ~~Cd~~g~CG~~g~C~~~-~~~~C~c~~g~~ 340 (433)
++|.....|...+.|... ....|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 678765678888899753 335699999876
No 29
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=47.71 E-value=69 Score=32.30 Aligned_cols=49 Identities=24% Similarity=0.619 Sum_probs=27.7
Q ss_pred ecCCcEEEEc-cCCeEEEeccCCCC---ce-----eEEEEeeCCCeeeecC-CCeeEEe
Q 036296 108 GTDGNLVLAE-ADGTVVWQTNTANK---GV-----VGFKLLSNGNMVLHDS-KGNFIWQ 156 (433)
Q Consensus 108 ~~~G~Lvl~~-~~~~~vWst~~~~~---~~-----~~~~Lld~GNlvl~~~-~~~~lWq 156 (433)
+.+|.|.-+| .+|+++|+...... ++ ....-..+|+|+..|. +|+++|+
T Consensus 72 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 130 (377)
T TIGR03300 72 DADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWR 130 (377)
T ss_pred CCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeee
Confidence 4457777777 46788887664321 11 0011224566666665 5778886
No 30
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=44.26 E-value=35 Score=28.02 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=22.7
Q ss_pred ceEEEEeCCCCCCCCCcEEEEecCCcEEEEc
Q 036296 87 FRWVWEANRGKPVRENATFSLGTDGNLVLAE 117 (433)
Q Consensus 87 ~t~vW~ANr~~pv~~~~~l~l~~~G~Lvl~~ 117 (433)
.++.|+-+....+....++.++.+|+|.+.+
T Consensus 34 P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~ 64 (95)
T cd05845 34 LRIYWMNSDLLHITQDERVSMGQNGNLYFAN 64 (95)
T ss_pred CEEEEECCCCccccccccEEECCCceEEEEE
Confidence 4788996554556556788888889998854
No 31
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=36.28 E-value=29 Score=21.95 Aligned_cols=31 Identities=26% Similarity=0.560 Sum_probs=21.5
Q ss_pred CCCCCccCCCCCcccccCC-CCCCCCCCCCCC
Q 036296 311 SECQLPERCGKFGLCDDNQ-CVACPMGKGLLG 341 (433)
Q Consensus 311 ~~Cd~~g~CG~~g~C~~~~-~~~C~c~~g~~~ 341 (433)
++|.....|...+.|.... ...|.|++||..
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 6676545788788896532 356999988753
No 32
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=34.95 E-value=1.7e+02 Score=29.35 Aligned_cols=71 Identities=14% Similarity=0.394 Sum_probs=43.7
Q ss_pred ceEEEEeCCCCC-----CCCCcEEEE-ecCCcEEEEcc-CCeEEEeccCCCC----ce----eEEEEeeCCCeeeecC-C
Q 036296 87 FRWVWEANRGKP-----VRENATFSL-GTDGNLVLAEA-DGTVVWQTNTANK----GV----VGFKLLSNGNMVLHDS-K 150 (433)
Q Consensus 87 ~t~vW~ANr~~p-----v~~~~~l~l-~~~G~Lvl~~~-~~~~vWst~~~~~----~~----~~~~Lld~GNlvl~~~-~ 150 (433)
..++|..+-..+ +-+...+.+ +.+|.|+.+|. +|.++|+....+. .+ ....-..+|.|+..|. +
T Consensus 85 G~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~t 164 (377)
T TIGR03300 85 GKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAAT 164 (377)
T ss_pred CcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCC
Confidence 356887554433 333345555 56899998886 7999998775321 11 1112234677887875 5
Q ss_pred CeeEEee
Q 036296 151 GNFIWQS 157 (433)
Q Consensus 151 ~~~lWqS 157 (433)
|+++|+-
T Consensus 165 G~~~W~~ 171 (377)
T TIGR03300 165 GERLWTY 171 (377)
T ss_pred CceeeEE
Confidence 8899984
No 33
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=33.80 E-value=48 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.594 Sum_probs=28.1
Q ss_pred ceEEEEeCCCCCCCCCcEEEEecCCcEEEEc
Q 036296 87 FRWVWEANRGKPVRENATFSLGTDGNLVLAE 117 (433)
Q Consensus 87 ~t~vW~ANr~~pv~~~~~l~l~~~G~Lvl~~ 117 (433)
.+..|+--.++++++++.+.|++.|.|++.|
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~ 43 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGKLMFKN 43 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCceEEeec
Confidence 3678999999999999999999999999975
No 34
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=31.89 E-value=39 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=22.9
Q ss_pred CCCCCccCCCCCcccccCCCCCCCCCCCCCC
Q 036296 311 SECQLPERCGKFGLCDDNQCVACPMGKGLLG 341 (433)
Q Consensus 311 ~~Cd~~g~CG~~g~C~~~~~~~C~c~~g~~~ 341 (433)
+.|....-|-.++.|..+ .|.|++||..
T Consensus 20 ~~C~~~~qC~~~s~C~~g---~C~C~~g~~~ 47 (52)
T PF01683_consen 20 ESCESDEQCIGGSVCVNG---RCQCPPGYVE 47 (52)
T ss_pred CCCCCcCCCCCcCEEcCC---EeECCCCCEe
Confidence 779999999999999654 5889988754
No 35
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=31.84 E-value=1.3e+02 Score=32.05 Aligned_cols=71 Identities=21% Similarity=0.459 Sum_probs=43.2
Q ss_pred ceEEEEeCCC-------CCCCCCcEEEE-ecCCcEEEEcc-CCeEEEeccCCCC-----------cee----EEE--Eee
Q 036296 87 FRWVWEANRG-------KPVRENATFSL-GTDGNLVLAEA-DGTVVWQTNTANK-----------GVV----GFK--LLS 140 (433)
Q Consensus 87 ~t~vW~ANr~-------~pv~~~~~l~l-~~~G~Lvl~~~-~~~~vWst~~~~~-----------~~~----~~~--Lld 140 (433)
.+++|..+-. .|+-...++.+ +.+|.|+-+|. .|+++|+...... +++ ... -..
T Consensus 39 ~~~~W~~~~~~~~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~ 118 (488)
T cd00216 39 LKVAWTFSTGDERGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF 118 (488)
T ss_pred ceeeEEEECCCCCCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC
Confidence 4578887543 35444445555 45799988885 6899999764321 110 011 123
Q ss_pred CCCeeeecC-CCeeEEee
Q 036296 141 NGNMVLHDS-KGNFIWQS 157 (433)
Q Consensus 141 ~GNlvl~~~-~~~~lWqS 157 (433)
+|.++-+|. +|+.+|+-
T Consensus 119 ~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 119 DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCeEEEEECCCCCEeeee
Confidence 677777776 58999994
No 36
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=29.45 E-value=62 Score=21.44 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=2.9
Q ss_pred eEEEeccC
Q 036296 121 TVVWQTNT 128 (433)
Q Consensus 121 ~~vWst~~ 128 (433)
+++|+..+
T Consensus 2 ~~~W~~~~ 9 (40)
T PF13570_consen 2 KVLWSYDT 9 (40)
T ss_dssp -EEEEEE-
T ss_pred ceeEEEEC
Confidence 34555444
No 37
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=28.99 E-value=3.1e+02 Score=23.26 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCcEEEEecCCcEEEEccCCeE------EEecc---------CCCC----ceeEEEEeeCCCeeeecCCCee
Q 036296 101 ENATFSLGTDGNLVLAEADGTV------VWQTN---------TANK----GVVGFKLLSNGNMVLHDSKGNF 153 (433)
Q Consensus 101 ~~~~l~l~~~G~Lvl~~~~~~~------vWst~---------~~~~----~~~~~~Lld~GNlvl~~~~~~~ 153 (433)
....|.|.+||.|+|..+++.- -|+-. ..+. .++ -.=+++|-|||.|++|+.
T Consensus 34 ~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k~~Vt-v~~l~~~~Lvl~d~dg~~ 104 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKKETLT-VKKLTDDELVGKDPDGKK 104 (111)
T ss_pred CceEEEEcCCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCccccceEE-EEEecCCeEEEEcCCCCE
Confidence 4578999999999987654321 13221 0111 121 123678899999988753
No 38
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=28.82 E-value=1.5e+02 Score=31.08 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=34.5
Q ss_pred eeEEeecCCe-EEEEEEeCCCCCeEEEEEEeecCCCCCceEEEEeCCCCCCCCCcEEEEecCCcEEEEccC
Q 036296 50 YRMLGIFNAP-FQLGFYNTTPNAYTLALRWGLTRQEPFFRWVWEANRGKPVRENATFSLGTDGNLVLAEAD 119 (433)
Q Consensus 50 ~~~l~s~~g~-F~lGF~~~~~~~~~l~Iw~~~~~~~~~~t~vW~ANr~~pv~~~~~l~l~~~G~Lvl~~~~ 119 (433)
.|.+.|+||- +-.-||++..+.|.| .-|+.+.. . + .+|+...+ .+|-+||.|++..+.
T Consensus 310 ~r~vrSPNGEDvLYvF~~~~~g~~~L-l~YN~I~k----~---v---~tPi~chG-~alf~DG~l~~fra~ 368 (448)
T PF12458_consen 310 ERKVRSPNGEDVLYVFYAREEGRYLL-LPYNLIRK----E---V---ATPIICHG-YALFEDGRLVYFRAE 368 (448)
T ss_pred EEEecCCCCceEEEEEEECCCCcEEE-Eechhhhh----h---h---cCCeeccc-eeEecCCEEEEEecC
Confidence 3566788875 555778776665433 44665532 1 1 34766554 344568888887654
No 39
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=28.56 E-value=2e+02 Score=21.76 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCCCCCcEEEEecCCcEEEEcc
Q 036296 87 FRWVWEANRGKPVRENATFSLGTDGNLVLAEA 118 (433)
Q Consensus 87 ~t~vW~ANr~~pv~~~~~l~l~~~G~Lvl~~~ 118 (433)
.++.|.-+. .++....++.+..+|.|+|.+-
T Consensus 16 p~v~W~k~~-~~l~~~~r~~~~~~g~L~I~~v 46 (73)
T cd05852 16 PKFSWSKGT-ELLVNNSRISIWDDGSLEILNI 46 (73)
T ss_pred CEEEEEeCC-EecccCCCEEEcCCCEEEECcC
Confidence 478898764 3555556777777899988653
No 40
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=27.02 E-value=46 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.647 Sum_probs=16.9
Q ss_pred cCCCCCcccccCCCCCCCCCCCCC
Q 036296 317 ERCGKFGLCDDNQCVACPMGKGLL 340 (433)
Q Consensus 317 g~CG~~g~C~~~~~~~C~c~~g~~ 340 (433)
..|...|.|... .-.|.|.+||.
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~ 28 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYT 28 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCc
Confidence 468888999754 33689988864
No 41
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=26.54 E-value=62 Score=34.40 Aligned_cols=53 Identities=30% Similarity=0.596 Sum_probs=30.9
Q ss_pred CCcEEEEccCCeEEEeccCCCCceeEEEEeeCCCeeee--------cCCCeeEEeeccCCCc
Q 036296 110 DGNLVLAEADGTVVWQTNTANKGVVGFKLLSNGNMVLH--------DSKGNFIWQSFDYPTD 163 (433)
Q Consensus 110 ~G~Lvl~~~~~~~vWst~~~~~~~~~~~Lld~GNlvl~--------~~~~~~lWqSFD~PTD 163 (433)
.+..+++|.+|.++|-..........+..+++|+|... |-.|+++|+ ++.|..
T Consensus 127 ~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~G~v~~~-~~l~~~ 187 (477)
T PF05935_consen 127 SSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLLGKVIWE-YDLPGG 187 (477)
T ss_dssp EEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT--EEEE-EE--TT
T ss_pred CceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCCCCEEEe-eecCCc
Confidence 46788899999999987754322212578899999874 335889999 777663
No 42
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=26.05 E-value=65 Score=24.89 Aligned_cols=19 Identities=21% Similarity=0.969 Sum_probs=10.5
Q ss_pred eeeecCCCeeEEeeccCCC
Q 036296 144 MVLHDSKGNFIWQSFDYPT 162 (433)
Q Consensus 144 lvl~~~~~~~lWqSFD~PT 162 (433)
||++|.+|..+|..|.+--
T Consensus 35 lvvRd~~g~mvWRaWNFEp 53 (70)
T PF06006_consen 35 LVVRDTEGQMVWRAWNFEP 53 (70)
T ss_dssp EEEE-SS--EEEEEESSST
T ss_pred EEEEcCCCcEEEEeeccCC
Confidence 6677777777777766543
No 43
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=24.04 E-value=1.2e+02 Score=18.60 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=12.5
Q ss_pred ecCCcEEEEcc-CCeEEEec
Q 036296 108 GTDGNLVLAEA-DGTVVWQT 126 (433)
Q Consensus 108 ~~~G~Lvl~~~-~~~~vWst 126 (433)
+.+|.|+-+|. +|.++|+.
T Consensus 13 ~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 13 STDGTLYALDAKTGEILWTY 32 (33)
T ss_pred cCCCEEEEEEcccCcEEEEc
Confidence 44677776665 67777764
No 44
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=22.76 E-value=3.1e+02 Score=27.65 Aligned_cols=71 Identities=31% Similarity=0.513 Sum_probs=43.5
Q ss_pred ceEEEEeCCCC-C------CCCCcEEEEe-cCCcEEEEccC-CeEEEeccCCC---C----------ceeEEEEee--CC
Q 036296 87 FRWVWEANRGK-P------VRENATFSLG-TDGNLVLAEAD-GTVVWQTNTAN---K----------GVVGFKLLS--NG 142 (433)
Q Consensus 87 ~t~vW~ANr~~-p------v~~~~~l~l~-~~G~Lvl~~~~-~~~vWst~~~~---~----------~~~~~~Lld--~G 142 (433)
-+.+|..+... | +.....+.+. .+|.|+-+|++ |..+|...... . +.+.+ -.+ +|
T Consensus 131 G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~-~~~~~~~ 209 (370)
T COG1520 131 GTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYV-GSDGYDG 209 (370)
T ss_pred CcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEE-ecCCCcc
Confidence 46789887766 2 2233555555 68999988876 99999954421 0 11111 112 44
Q ss_pred CeeeecC-CCeeEEeec
Q 036296 143 NMVLHDS-KGNFIWQSF 158 (433)
Q Consensus 143 Nlvl~~~-~~~~lWqSF 158 (433)
+|+-.+. +|..+|+.+
T Consensus 210 ~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 210 ILYALNAEDGTLKWSQK 226 (370)
T ss_pred eEEEEEccCCcEeeeee
Confidence 6666665 688888854
No 45
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=21.62 E-value=53 Score=21.80 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=11.5
Q ss_pred ccccCCCCCCCCCCCCC
Q 036296 324 LCDDNQCVACPMGKGLL 340 (433)
Q Consensus 324 ~C~~~~~~~C~c~~g~~ 340 (433)
.|+.+..-.|.||.||.
T Consensus 11 ~CDpn~~~~C~CPeGyI 27 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYI 27 (34)
T ss_pred ccCCCCCCceeCCCceE
Confidence 45544444799999983
No 46
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.57 E-value=76 Score=26.12 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=6.6
Q ss_pred CCcchhHHHHHHH
Q 036296 1 MSSSSAIITLFAL 13 (433)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (433)
|.|-.+++|.|+|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 6644445554443
No 47
>PHA02887 EGF-like protein; Provisional
Probab=21.16 E-value=91 Score=26.72 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=21.2
Q ss_pred CCCC--CccCCCCCccccc---CCCCCCCCCCCCC
Q 036296 311 SECQ--LPERCGKFGLCDD---NQCVACPMGKGLL 340 (433)
Q Consensus 311 ~~Cd--~~g~CG~~g~C~~---~~~~~C~c~~g~~ 340 (433)
.+|. ..++|= +|.|.. -+.|.|.|+.||.
T Consensus 84 ~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYt 117 (126)
T PHA02887 84 EKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYT 117 (126)
T ss_pred cccChHhhCEee-CCEEEccccCCCceeECCCCcc
Confidence 5564 467787 789965 2468899999984
No 48
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.23 E-value=2.8e+02 Score=28.88 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=25.1
Q ss_pred CCcEEEEccCCeEEEeccCCC--CceeEEEEeeCCCeeeecCCCeeEE
Q 036296 110 DGNLVLAEADGTVVWQTNTAN--KGVVGFKLLSNGNMVLHDSKGNFIW 155 (433)
Q Consensus 110 ~G~Lvl~~~~~~~vWst~~~~--~~~~~~~Lld~GNlvl~~~~~~~lW 155 (433)
.|++++.+.+|...|...... .....+...++|.++|....|.++|
T Consensus 258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~ 305 (398)
T PLN00033 258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV 305 (398)
T ss_pred CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE
Confidence 344444444444456643322 1233455678899998877666554
Done!