Your job contains 1 sequence.
>036298
MAISKLERSQFEKIVKSTCSSSWKPLPEDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDV
EVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSN
HNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKED
LSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVH
VAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDNISFYEGYLESTEMF
QATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTKFQ
LRRKTTGT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036298
(368 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195698 - symbol:emb1220 "AT1G60170" species:3... 280 2.7e-35 2
UNIPROTKB|E7ESA8 - symbol:PRPF31 "U4/U6 small nuclear rib... 241 2.1e-18 1
UNIPROTKB|E1BM48 - symbol:PRPF31 "Uncharacterized protein... 241 3.0e-18 1
UNIPROTKB|F1PKI0 - symbol:PRPF31 "Uncharacterized protein... 241 3.0e-18 1
UNIPROTKB|Q8WWY3 - symbol:PRPF31 "U4/U6 small nuclear rib... 241 3.0e-18 1
UNIPROTKB|F1RNI3 - symbol:PRPF31 "Uncharacterized protein... 238 7.3e-18 1
MGI|MGI:1916238 - symbol:Prpf31 "PRP31 pre-mRNA processin... 238 7.3e-18 1
ZFIN|ZDB-GENE-040426-1561 - symbol:prpf31 "PRP31 pre-mRNA... 228 1.3e-16 1
UNIPROTKB|Q5U5C5 - symbol:prpf31 "U4/U6 small nuclear rib... 224 3.9e-16 1
UNIPROTKB|Q6NVP6 - symbol:prpf31 "U4/U6 small nuclear rib... 223 5.1e-16 1
UNIPROTKB|E7EVX8 - symbol:PRPF31 "U4/U6 small nuclear rib... 215 4.5e-15 1
ASPGD|ASPL0000059636 - symbol:AN1260 species:162425 "Emer... 212 1.2e-14 1
FB|FBgn0036487 - symbol:Prp31 species:7227 "Drosophila me... 204 9.2e-14 1
UNIPROTKB|E7EU94 - symbol:PRPF31 "U4/U6 small nuclear rib... 180 3.5e-12 1
UNIPROTKB|E7EN72 - symbol:PRPF31 "U4/U6 small nuclear rib... 182 4.5e-12 1
UNIPROTKB|E7ESX0 - symbol:PRPF31 "U4/U6 small nuclear rib... 180 6.6e-12 1
POMBASE|SPBC119.13c - symbol:prp31 "U4/U6 x U5 tri-snRNP ... 183 2.5e-11 1
DICTYBASE|DDB_G0289595 - symbol:prpf31 "pre-mRNA processi... 178 7.4e-11 1
TAIR|locus:2016134 - symbol:AT1G70400 "AT1G70400" species... 120 4.1e-10 2
RGD|1305832 - symbol:Prpf31 "PRP31 pre-mRNA processing fa... 144 1.9e-09 1
DICTYBASE|DDB_G0285679 - symbol:nol5a "NOP5 family protei... 141 1.4e-06 1
TAIR|locus:2087755 - symbol:AT3G12860 species:3702 "Arabi... 140 1.6e-06 1
TAIR|locus:2205270 - symbol:NOP56 "homolog of nucleolar p... 136 4.9e-06 1
SGD|S000003323 - symbol:PRP31 "Splicing factor" species:4... 128 3.5e-05 1
WB|WBGene00022458 - symbol:prp-31 species:6239 "Caenorhab... 128 3.6e-05 1
FB|FBgn0026196 - symbol:nop5 "nop5" species:7227 "Drosoph... 126 6.1e-05 1
GENEDB_PFALCIPARUM|PFD0450c - symbol:PFD0450c "pre-mrna s... 125 0.00016 2
UNIPROTKB|C0H4A0 - symbol:PFD0450c "Pre-mRNA splicing fac... 125 0.00016 2
ASPGD|ASPL0000040023 - symbol:AN10352 species:162425 "Eme... 122 0.00017 1
TAIR|locus:2181211 - symbol:AT5G27120 "AT5G27120" species... 121 0.00022 2
WB|WBGene00020915 - symbol:nol-5 species:6239 "Caenorhabd... 120 0.00026 1
POMBASE|SPBC646.10c - symbol:SPBC646.10c "U3 snoRNP prote... 119 0.00035 1
SGD|S000004187 - symbol:NOP56 "Nucleolar protein componen... 119 0.00036 1
UNIPROTKB|E1BUS2 - symbol:NOP58 "Uncharacterized protein"... 119 0.00038 1
UNIPROTKB|G4N2E5 - symbol:MGG_07915 "Uncharacterized prot... 118 0.00048 1
TAIR|locus:2096214 - symbol:AT3G05060 "AT3G05060" species... 116 0.00083 1
>TAIR|locus:2195698 [details] [associations]
symbol:emb1220 "AT1G60170" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] InterPro:IPR027105 Pfam:PF01798
EMBL:CP002684 GO:GO:0003676 GO:GO:0030529 InterPro:IPR012976
InterPro:IPR002687 Pfam:PF08060 SMART:SM00931 KO:K12844 OMA:VESDPEY
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 EMBL:AY080777
EMBL:AY117155 EMBL:AY084782 IPI:IPI00547292 RefSeq:NP_564754.1
UniGene:At.21797 ProteinModelPortal:Q8RXN6 SMR:Q8RXN6 STRING:Q8RXN6
PRIDE:Q8RXN6 EnsemblPlants:AT1G60170.1 GeneID:842312
KEGG:ath:AT1G60170 TAIR:At1g60170 InParanoid:Q8RXN6
PhylomeDB:Q8RXN6 ProtClustDB:CLSN2688931 ArrayExpress:Q8RXN6
Genevestigator:Q8RXN6 Uniprot:Q8RXN6
Length = 485
Score = 280 (103.6 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 67/186 (36%), Positives = 99/186 (53%)
Query: 180 DLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVV 239
DL+D ++ V + ++ LPEDVLQ ++ACDR + LDS +K + + + SK+
Sbjct: 155 DLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMG 214
Query: 240 HVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKSDNISFYE-------G 292
+APNL +VGS LA MPA ++VLG ++ + F G
Sbjct: 215 SIAPNLSAIVGSAVAAKLMGTAGGLSA-LAKMPACNVQVLGHKRKNLAGFSSATSQSRVG 273
Query: 293 YLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEI 352
YLE TE++Q+T ++ RA +L+A K AA VD RGD G +G+A R+EI IE
Sbjct: 274 YLEQTEIYQSTPPGLQARAGRLVAAKSTLAARVDATRGDPLGISGKAFREEIRKKIEKWQ 333
Query: 353 RPPKTK 358
PP +
Sbjct: 334 EPPPAR 339
Score = 127 (49.8 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 40/108 (37%), Positives = 57/108 (52%)
Query: 55 MPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDIAR---CIDTD---RLI- 107
M D+E L+ + DN S Q + + K +AL + D A ++ D +LI
Sbjct: 38 MDMADLETLNYDDLDNVSKLQKSQRYADIMHKVEEALGKDSDGAEKGTVLEDDPEYKLIV 97
Query: 108 --DQLE-SIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAI 152
+QL IENEIV HNFI+D Y+ KF +LE L+ P+ YA + K I
Sbjct: 98 DCNQLSVDIENEIVIVHNFIKDKYKLKFQELESLVHHPIDYACVVKKI 145
>UNIPROTKB|E7ESA8 [details] [associations]
symbol:PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31"
species:9606 "Homo sapiens" [GO:0000244 "assembly of spliceosomal
tri-snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] InterPro:IPR027105 Pfam:PF01798 EMBL:AC012314
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 IPI:IPI00738596
HGNC:HGNC:15446 ProteinModelPortal:E7ESA8 SMR:E7ESA8 PRIDE:E7ESA8
Ensembl:ENST00000419967 UCSC:uc010yek.1 ArrayExpress:E7ESA8
Bgee:E7ESA8 Uniprot:E7ESA8
Length = 450
Score = 241 (89.9 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 70/253 (27%), Positives = 117/253 (46%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L E+ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SD 285
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+ S
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQRKTLSGFSST 265
Query: 286 NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
++ + GY+ +++ Q+ +R +A +L+A K AA VD G G L+DEI
Sbjct: 266 SVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIE 325
Query: 346 GTIEYEIRPPKTK 358
+ PP K
Sbjct: 326 RKFDKWQEPPPVK 338
>UNIPROTKB|E1BM48 [details] [associations]
symbol:PRPF31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0070990 "snRNP
binding" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030
"Cajal body" evidence=IEA] [GO:0005687 "U4 snRNP" evidence=IEA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IEA]
InterPro:IPR027105 Pfam:PF01798 GO:GO:0016607 GO:GO:0000244
GO:GO:0015030 GO:GO:0071339 GO:GO:0046540 GO:GO:0005687
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
CTD:26121 GeneTree:ENSGT00550000075069 KO:K12844 OMA:VESDPEY
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 GO:GO:0070990
EMBL:DAAA02047818 IPI:IPI00691365 RefSeq:NP_001193214.1
UniGene:Bt.5160 Ensembl:ENSBTAT00000010198 GeneID:513577
KEGG:bta:513577 NextBio:20870922 Uniprot:E1BM48
Length = 499
Score = 241 (89.9 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 70/253 (27%), Positives = 117/253 (46%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L E+ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SD 285
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+ S
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQRKTLSGFSST 265
Query: 286 NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
++ + GY+ +++ Q+ +R +A +L+A K AA VD G G L+DEI
Sbjct: 266 SVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIE 325
Query: 346 GTIEYEIRPPKTK 358
+ PP K
Sbjct: 326 RKFDKWQEPPPVK 338
>UNIPROTKB|F1PKI0 [details] [associations]
symbol:PRPF31 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071339 "MLL1 complex" evidence=IEA]
[GO:0070990 "snRNP binding" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0005687
"U4 snRNP" evidence=IEA] [GO:0000244 "assembly of spliceosomal
tri-snRNP" evidence=IEA] InterPro:IPR027105 Pfam:PF01798
GO:GO:0016607 GO:GO:0000244 GO:GO:0015030 GO:GO:0071339
GO:GO:0046540 GO:GO:0005687 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08060 SMART:SM00931 CTD:26121 GeneTree:ENSGT00550000075069
KO:K12844 OMA:VESDPEY InterPro:IPR019175 PANTHER:PTHR13904
Pfam:PF09785 GO:GO:0070990 EMBL:AAEX03000741 RefSeq:XP_850917.1
Ensembl:ENSCAFT00000004264 GeneID:476389 KEGG:cfa:476389
Uniprot:F1PKI0
Length = 499
Score = 241 (89.9 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 70/253 (27%), Positives = 117/253 (46%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L E+ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SD 285
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+ S
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQRKTLSGFSST 265
Query: 286 NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
++ + GY+ +++ Q+ +R +A +L+A K AA VD G G L+DEI
Sbjct: 266 SVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIE 325
Query: 346 GTIEYEIRPPKTK 358
+ PP K
Sbjct: 326 RKFDKWQEPPPVK 338
>UNIPROTKB|Q8WWY3 [details] [associations]
symbol:PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000244 "assembly of spliceosomal
tri-snRNP" evidence=IMP;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IDA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0070990 "snRNP binding" evidence=IPI] [GO:0005690
"U4atac snRNP" evidence=TAS] [GO:0005687 "U4 snRNP" evidence=IDA]
[GO:0005684 "U2-type spliceosomal complex" evidence=IC]
InterPro:IPR027105 Pfam:PF01798 GO:GO:0016607 GO:GO:0000244
GO:GO:0003723 Orphanet:791 GO:GO:0015030 GO:GO:0071339
GO:GO:0046540 GO:GO:0005684 GO:GO:0005687 EMBL:AC012314 PDB:2OZB
PDB:3SIU PDB:3SIV PDBsum:2OZB PDBsum:3SIU PDBsum:3SIV
eggNOG:COG1498 InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060
SMART:SM00931 PROSITE:PS51358 CTD:26121 HOVERGEN:HBG082193
KO:K12844 OMA:VESDPEY OrthoDB:EOG4W6NW1 InterPro:IPR019175
PANTHER:PTHR13904 Pfam:PF09785 EMBL:AY040822 EMBL:AF308303
EMBL:AL050369 EMBL:AK098547 EMBL:BC117389 IPI:IPI00167198
IPI:IPI00292000 IPI:IPI00738596 RefSeq:NP_056444.3
UniGene:Hs.515598 ProteinModelPortal:Q8WWY3 SMR:Q8WWY3
IntAct:Q8WWY3 STRING:Q8WWY3 PhosphoSite:Q8WWY3 DMDM:90101442
PaxDb:Q8WWY3 PRIDE:Q8WWY3 DNASU:26121 Ensembl:ENST00000321030
Ensembl:ENST00000571534 Ensembl:ENST00000571610
Ensembl:ENST00000572776 Ensembl:ENST00000574214
Ensembl:ENST00000576100 Ensembl:ENST00000576581
Ensembl:ENST00000576817 Ensembl:ENST00000576989 GeneID:26121
KEGG:hsa:26121 UCSC:uc002qdh.2 GeneCards:GC19P054618
H-InvDB:HIX0027609 H-InvDB:HIX0137464 HGNC:HGNC:15446 HPA:HPA041939
MIM:600138 MIM:606419 neXtProt:NX_Q8WWY3 PharmGKB:PA33814
HOGENOM:HOG000207983 InParanoid:Q8WWY3 PhylomeDB:Q8WWY3
EvolutionaryTrace:Q8WWY3 GenomeRNAi:26121 NextBio:48131
ArrayExpress:Q8WWY3 Bgee:Q8WWY3 CleanEx:HS_PRPF31
Genevestigator:Q8WWY3 GermOnline:ENSG00000105618 GO:GO:0005690
GO:GO:0070990 Uniprot:Q8WWY3
Length = 499
Score = 241 (89.9 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 70/253 (27%), Positives = 117/253 (46%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L E+ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SD 285
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+ S
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQRKTLSGFSST 265
Query: 286 NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
++ + GY+ +++ Q+ +R +A +L+A K AA VD G G L+DEI
Sbjct: 266 SVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIE 325
Query: 346 GTIEYEIRPPKTK 358
+ PP K
Sbjct: 326 RKFDKWQEPPPVK 338
>UNIPROTKB|F1RNI3 [details] [associations]
symbol:PRPF31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0070990 "snRNP
binding" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030
"Cajal body" evidence=IEA] [GO:0005687 "U4 snRNP" evidence=IEA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IEA]
InterPro:IPR027105 Pfam:PF01798 GO:GO:0016607 GO:GO:0000244
GO:GO:0015030 GO:GO:0071339 GO:GO:0046540 GO:GO:0005687
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
GeneTree:ENSGT00550000075069 KO:K12844 OMA:VESDPEY
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 GO:GO:0070990
EMBL:FP476135 RefSeq:XP_003127461.2 Ensembl:ENSSSCT00000003624
GeneID:100520791 KEGG:ssc:100520791 Uniprot:F1RNI3
Length = 499
Score = 238 (88.8 bits), Expect = 7.3e-18, P = 7.3e-18
Identities = 69/253 (27%), Positives = 117/253 (46%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L ++ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SD 285
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+ S
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQRKTLSGFSST 265
Query: 286 NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
++ + GY+ +++ Q+ +R +A +L+A K AA VD G G L+DEI
Sbjct: 266 SVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIE 325
Query: 346 GTIEYEIRPPKTK 358
+ PP K
Sbjct: 326 RKFDKWQEPPPVK 338
>MGI|MGI:1916238 [details] [associations]
symbol:Prpf31 "PRP31 pre-mRNA processing factor 31 homolog
(yeast)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO;ISA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005687 "U4 snRNP"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0015030 "Cajal body"
evidence=ISA] [GO:0016607 "nuclear speck" evidence=ISA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISA] [GO:0070990 "snRNP
binding" evidence=ISO] [GO:0071339 "MLL1 complex" evidence=ISO]
InterPro:IPR027105 MGI:MGI:1916238 Pfam:PF01798 GO:GO:0016607
GO:GO:0005681 GO:GO:0000244 GO:GO:0003723 GO:GO:0015030
GO:GO:0043021 GO:GO:0071339 GO:GO:0046540 GO:GO:0005687
EMBL:AC130680 eggNOG:COG1498 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08060 SMART:SM00931 PROSITE:PS51358 CTD:26121
GeneTree:ENSGT00550000075069 HOVERGEN:HBG082193 KO:K12844
OMA:VESDPEY OrthoDB:EOG4W6NW1 InterPro:IPR019175 PANTHER:PTHR13904
Pfam:PF09785 GO:GO:0070990 EMBL:AY040823 EMBL:AK005294
EMBL:AK033190 EMBL:AK033283 EMBL:AK044398 EMBL:AK044457
EMBL:AK051260 EMBL:CT010189 EMBL:BC018376 EMBL:BC057877
EMBL:BC061461 IPI:IPI00331424 IPI:IPI00459791 IPI:IPI00625183
IPI:IPI00742282 IPI:IPI00742413 RefSeq:NP_001153186.1
RefSeq:NP_081604.3 UniGene:Mm.246863 ProteinModelPortal:Q8CCF0
SMR:Q8CCF0 STRING:Q8CCF0 PhosphoSite:Q8CCF0 PaxDb:Q8CCF0
PRIDE:Q8CCF0 DNASU:68988 Ensembl:ENSMUST00000008517
Ensembl:ENSMUST00000108636 Ensembl:ENSMUST00000179769 GeneID:68988
KEGG:mmu:68988 UCSC:uc009evi.2 UCSC:uc012ewf.1 InParanoid:Q8CCF0
NextBio:328355 Bgee:Q8CCF0 Genevestigator:Q8CCF0
GermOnline:ENSMUSG00000008373 Uniprot:Q8CCF0
Length = 499
Score = 238 (88.8 bits), Expect = 7.3e-18, P = 7.3e-18
Identities = 69/253 (27%), Positives = 117/253 (46%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L ++ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SD 285
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+ S
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQRKTLSGFSST 265
Query: 286 NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
++ + GY+ +++ Q+ +R +A +L+A K AA VD G G L+DEI
Sbjct: 266 SVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIE 325
Query: 346 GTIEYEIRPPKTK 358
+ PP K
Sbjct: 326 RKFDKWQEPPPVK 338
>ZFIN|ZDB-GENE-040426-1561 [details] [associations]
symbol:prpf31 "PRP31 pre-mRNA processing factor 31
homolog (yeast)" species:7955 "Danio rerio" [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;IMP] [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=IEA] [GO:0060041 "retina
development in camera-type eye" evidence=IMP] [GO:0071339 "MLL1
complex" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR027105 Pfam:PF01798
ZFIN:ZDB-GENE-040426-1561 GO:GO:0005681 GO:GO:0003723 GO:GO:0060041
GO:GO:0000398 GO:GO:0071339 eggNOG:COG1498 InterPro:IPR012976
InterPro:IPR002687 Pfam:PF08060 SMART:SM00931 PROSITE:PS51358
EMBL:BC055531 IPI:IPI00508030 RefSeq:NP_956798.1 UniGene:Dr.76439
ProteinModelPortal:Q7SXM7 SMR:Q7SXM7 STRING:Q7SXM7 PRIDE:Q7SXM7
Ensembl:ENSDART00000137029 GeneID:393476 KEGG:dre:393476 CTD:26121
GeneTree:ENSGT00550000075069 HOGENOM:HOG000202033
HOVERGEN:HBG082193 InParanoid:Q7SXM7 KO:K12844 OMA:VESDPEY
OrthoDB:EOG4W6NW1 NextBio:20814506 ArrayExpress:Q7SXM7 Bgee:Q7SXM7
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 Uniprot:Q7SXM7
Length = 508
Score = 228 (85.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 74/296 (25%), Positives = 131/296 (44%)
Query: 77 YQESHEDLAKYIDALKNEEDIARCIDTD---RLI---DQLE-SIENEIVSNHNFIRDSYR 129
+ E + ++ Y+ + +++ ++ D RLI + L I+NE+ H F+RD Y
Sbjct: 71 FAEIMDKISHYVGNQRKNSEVSGPVEADPEYRLIVAANNLTVEIDNELNIIHKFVRDKYS 130
Query: 130 SKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRL 189
+F +LE L+P L Y K + G LE+ C+ E L +
Sbjct: 131 KRFPELESLVPNALDYIRTVKEL---GNNLEK-------------CKNNETLQQILTNAT 174
Query: 190 VKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVV 249
+ V + + L +D LQ +ACD + L+ K +++ + S++ +APNL +V
Sbjct: 175 IMVVSVTASTTQGTMLGDDELQRLEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIV 234
Query: 250 GSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SDNISFYEGYLESTEMFQA 302
G+ TNL+ MPA + +LG Q+ S ++ + GY+ ++ Q
Sbjct: 235 GASTAAKIMGVAGGL-TNLSKMPACNLMLLGAQRRTLSGFSSTSLLPHTGYIYHCDVVQT 293
Query: 303 TTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTK 358
+R +A +L++ K A+ VD G G L++EI + PP K
Sbjct: 294 LPPDLRRKAARLVSAKCTLASRVDSFHESADGKVGYDLKEEIERKFDKWQEPPPVK 349
>UNIPROTKB|Q5U5C5 [details] [associations]
symbol:prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31"
species:8355 "Xenopus laevis" [GO:0071339 "MLL1 complex"
evidence=ISS] InterPro:IPR027105 Pfam:PF01798 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 GO:GO:0071339
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
PROSITE:PS51358 CTD:26121 HOVERGEN:HBG082193 KO:K12844
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 EMBL:BC084759
RefSeq:NP_001088437.1 UniGene:Xl.48511 ProteinModelPortal:Q5U5C5
SMR:Q5U5C5 GeneID:495301 KEGG:xla:495301 Xenbase:XB-GENE-865857
Uniprot:Q5U5C5
Length = 498
Score = 224 (83.9 bits), Expect = 3.9e-16, P = 3.9e-16
Identities = 66/253 (26%), Positives = 114/253 (45%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 102 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNNLDK----------- 147
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L ++ L+ +ACD + L+ K +++
Sbjct: 148 --CKNNENLQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYE 205
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKSDNISF--- 289
+ S++ +APNL +VG+ TNL+ MPA + +LG Q+ F
Sbjct: 206 YVESRMSFIAPNLSIIVGASTAAKIMGIAGGL-TNLSKMPACNVMLLGAQRKTLTGFSST 264
Query: 290 ----YEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
+ GY+ +E+ Q+ + +A +L++ K A+ VD + G G L++EI
Sbjct: 265 SVLPHTGYIYHSEIVQSLPSDLHRKAARLVSAKCTLASRVDSFHENPEGKIGYDLKEEIE 324
Query: 346 GTIEYEIRPPKTK 358
+ PP K
Sbjct: 325 RKFDKWQEPPPVK 337
>UNIPROTKB|Q6NVP6 [details] [associations]
symbol:prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0071339 "MLL1
complex" evidence=ISS] InterPro:IPR027105 Pfam:PF01798
GO:GO:0005681 GO:GO:0003723 GO:GO:0060041 GO:GO:0000398
GO:GO:0071339 eggNOG:COG1498 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08060 SMART:SM00931 PROSITE:PS51358 CTD:26121
GeneTree:ENSGT00550000075069 HOVERGEN:HBG082193 KO:K12844
OrthoDB:EOG4W6NW1 InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785
HOGENOM:HOG000207983 EMBL:BC067959 RefSeq:NP_998859.1
UniGene:Str.66282 ProteinModelPortal:Q6NVP6 SMR:Q6NVP6
STRING:Q6NVP6 Ensembl:ENSXETT00000023852 GeneID:407890
KEGG:xtr:407890 Xenbase:XB-GENE-489336 InParanoid:Q6NVP6
OMA:ESTEGKX Bgee:Q6NVP6 Uniprot:Q6NVP6
Length = 498
Score = 223 (83.6 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 66/253 (26%), Positives = 115/253 (45%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 102 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNNLDK----------- 147
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L ++ L+ +ACD + L+ K +++
Sbjct: 148 --CKNNENLQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYE 205
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SD 285
+ S++ +APNL +VG+ TNL+ MPA + +LG Q+ S
Sbjct: 206 YVESRMSFIAPNLSIIVGASTAAKIMGIAGGL-TNLSKMPACNVMLLGAQRKTLSGFSST 264
Query: 286 NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
++ + GY+ +++ Q+ + +A +L++ K AA VD G G L++EI
Sbjct: 265 SVLPHTGYIYHSDIVQSLPPDLHRKAARLVSAKCTLAARVDSFHESSEGKVGYDLKEEIE 324
Query: 346 GTIEYEIRPPKTK 358
+ PP K
Sbjct: 325 RKFDKWQEPPPVK 337
>UNIPROTKB|E7EVX8 [details] [associations]
symbol:PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31"
species:9606 "Homo sapiens" [GO:0000244 "assembly of spliceosomal
tri-snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] InterPro:IPR027105 Pfam:PF01798 EMBL:AC012314
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 HGNC:HGNC:15446
IPI:IPI00657721 ProteinModelPortal:E7EVX8 SMR:E7EVX8 PRIDE:E7EVX8
Ensembl:ENST00000391755 ArrayExpress:E7EVX8 Bgee:E7EVX8
Uniprot:E7EVX8
Length = 493
Score = 215 (80.7 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 68/253 (26%), Positives = 115/253 (45%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L E+ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SD 285
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+ S
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQRKTLSGFSST 265
Query: 286 NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
++ + GY+ +++ Q+ +R +A +L+A K AA VD G +DEI
Sbjct: 266 SVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEG------KDEIE 319
Query: 346 GTIEYEIRPPKTK 358
+ PP K
Sbjct: 320 RKFDKWQEPPPVK 332
>ASPGD|ASPL0000059636 [details] [associations]
symbol:AN1260 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR027105 Pfam:PF01798 EMBL:BN001308
EMBL:AACD01000017 eggNOG:COG1498 InterPro:IPR012976
InterPro:IPR002687 Pfam:PF08060 SMART:SM00931 KO:K12844
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785
HOGENOM:HOG000207983 OMA:RDHYSIR OrthoDB:EOG4ZCXDV
RefSeq:XP_658864.1 ProteinModelPortal:Q5BDX0 STRING:Q5BDX0
EnsemblFungi:CADANIAT00001363 GeneID:2877039 KEGG:ani:AN1260.2
Uniprot:Q5BDX0
Length = 521
Score = 212 (79.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 74/292 (25%), Positives = 131/292 (44%)
Query: 79 ESHEDL--AKYIDALKNEEDIARCID--TDRLIDQLE---SIENEIVSNHNFIRDSYRSK 131
E ED A ++A++ + D + + + ++ E S +E+ H +RD Y +
Sbjct: 12 EDDEDFEGADGVEAIEEDRDEEQLLQEPAKAVTNEFEVALSTADELTRLHKSLRDHYSIR 71
Query: 132 FGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYF-SLPCRLKEDLSDETQDRLV 190
F +LE L+ + YA AI GP + TSA+ +P LK L T L+
Sbjct: 72 FPELETLVTNSIDYAKTV-AILKNGPLTDIKALSTSADNMVGVP--LKSILDGPT---LM 125
Query: 191 KVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVG 250
V E +R E + E L++ MD C+R++ LD E+ L + + + +APNL +VG
Sbjct: 126 VVAVEGTTTRGRE-MTEAELKVVMDTCERILKLDRERTALTQSIQANMNQIAPNLAALVG 184
Query: 251 SXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKSDNISFY-------EGYLESTEMFQAT 303
LA +PA + G ++ D + F +G+L ++E+ Q
Sbjct: 185 PETAAQFLNQTGGLR-ELAKIPACNLGAQGSKRKDGLGFATNTSIRSQGFLYNSELIQDI 243
Query: 304 TLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPP 355
++ +A ++++ K+ A D+ + GS G L+ + +E PP
Sbjct: 244 PNDLKRQAIRIVSAKMVLAVRADVSKYSPDGSLGEDLKQQCFQRLEKLTEPP 295
>FB|FBgn0036487 [details] [associations]
symbol:Prp31 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0000244 "assembly
of spliceosomal tri-snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR027105 Pfam:PF01798 EMBL:AE014296 GO:GO:0022008
GO:GO:0071011 GO:GO:0000398 eggNOG:COG1498 InterPro:IPR012976
InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
GeneTree:ENSGT00550000075069 KO:K12844 OMA:VESDPEY
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 HSSP:O28191
EMBL:AY051928 RefSeq:NP_648756.1 UniGene:Dm.9673 SMR:Q9VUM1
STRING:Q9VUM1 EnsemblMetazoa:FBtr0075642 GeneID:39655
KEGG:dme:Dmel_CG6876 UCSC:CG6876-RA CTD:39655 FlyBase:FBgn0036487
InParanoid:Q9VUM1 OrthoDB:EOG4JWSVZ GenomeRNAi:39655 NextBio:814716
Uniprot:Q9VUM1
Length = 501
Score = 204 (76.9 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 81/342 (23%), Positives = 157/342 (45%)
Query: 28 EDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLN--DGYQESHEDLA 85
E +L + + P LM DV T+ + ++ L E N+L + Y A
Sbjct: 32 ESLLAEKLAKPAPNLM---DVDVTVQSV--RELCKLRDSERLKNTLQQIEHYASRQRTAA 86
Query: 86 KYIDALKNEEDIARCIDTDRL-IDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLH 144
+ + +++++ + +D + + +D I+NEI H F ++ Y+ +F +L+ L+ +
Sbjct: 87 EMLGSVESDPEYCLIVDANAIAVD----IDNEISIVHKFTKEKYQKRFPELDSLIVGEIE 142
Query: 145 YALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEP 204
Y L K + G L++V + E +L+ L TQ ++ V + ++
Sbjct: 143 YLLAVKEL---GNDLDQV---KNNE------KLQAIL---TQATIMIVSVTASTTQGTML 187
Query: 205 LPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXX 264
P + ++ +AC+ I L++ K +++ + S++ +APNL +VG+
Sbjct: 188 TPAEKAKID-EACEMAIELNNFKSKIYEYVESRMTFIAPNLSMIVGASTAAKLLGIAGGL 246
Query: 265 XTNLANMPASEIEVLGRQKSDNISF-------YEGYLESTEMFQATTLCMRERARQLLAE 317
+ L+ MPA ++VLG QK F + GY+ +++ Q T +R +A +L+A
Sbjct: 247 -SKLSKMPACNVQVLGAQKKTLSGFSQTQMLPHTGYVYYSQIVQDTAPDLRRKAARLVAA 305
Query: 318 KLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTKF 359
K AA VD V G G ++++ ++ PP KF
Sbjct: 306 KSVLAARVDACHESVHGEIGLRFKEDVEKKLDKLQEPPPVKF 347
>UNIPROTKB|E7EU94 [details] [associations]
symbol:PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31"
species:9606 "Homo sapiens" [GO:0000244 "assembly of spliceosomal
tri-snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] InterPro:IPR027105 Pfam:PF01798 EMBL:AC012314
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
PANTHER:PTHR13904 HGNC:HGNC:15446 IPI:IPI00657750
ProteinModelPortal:E7EU94 SMR:E7EU94 PRIDE:E7EU94
Ensembl:ENST00000447810 ArrayExpress:E7EU94 Bgee:E7EU94
Uniprot:E7EU94
Length = 261
Score = 180 (68.4 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 48/171 (28%), Positives = 81/171 (47%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L E+ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK 283
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQR 256
>UNIPROTKB|E7EN72 [details] [associations]
symbol:PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31"
species:9606 "Homo sapiens" [GO:0000244 "assembly of spliceosomal
tri-snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] InterPro:IPR027105 Pfam:PF01798 EMBL:AC012314
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
PANTHER:PTHR13904 IPI:IPI00167198 HGNC:HGNC:15446
ProteinModelPortal:E7EN72 SMR:E7EN72 PRIDE:E7EN72
Ensembl:ENST00000445811 ArrayExpress:E7EN72 Bgee:E7EN72
Uniprot:E7EN72
Length = 284
Score = 182 (69.1 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 52/197 (26%), Positives = 93/197 (47%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L E+ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK-------SD 285
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+ S
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQRKTLSGFSST 265
Query: 286 NISFYEGYLESTEMFQA 302
++ + GY+ +++ Q+
Sbjct: 266 SVLPHTGYIYHSDIVQS 282
>UNIPROTKB|E7ESX0 [details] [associations]
symbol:PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31"
species:9606 "Homo sapiens" [GO:0000244 "assembly of spliceosomal
tri-snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] InterPro:IPR027105 Pfam:PF01798 EMBL:AC012314
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
PANTHER:PTHR13904 HGNC:HGNC:15446 IPI:IPI00657783
ProteinModelPortal:E7ESX0 SMR:E7ESX0 PRIDE:E7ESX0
Ensembl:ENST00000445124 ArrayExpress:E7ESX0 Bgee:E7ESX0
Uniprot:E7ESX0
Length = 276
Score = 180 (68.4 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 48/171 (28%), Positives = 81/171 (47%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L E+ L+ +ACD + L++ K +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYE 206
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQK 283
+ S++ +APNL ++G+ TNL+ MPA I +LG Q+
Sbjct: 207 YVESRMSFIAPNLSIIIGASTAAKIMGVAGGL-TNLSKMPACNIMLLGAQR 256
>POMBASE|SPBC119.13c [details] [associations]
symbol:prp31 "U4/U6 x U5 tri-snRNP complex subunit
Prp31" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007126
"meiosis" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR027105 PomBase:SPBC119.13c
Pfam:PF01798 GO:GO:0007126 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005681 GO:GO:0000244 GO:GO:0003723 GO:GO:0046540
GO:GO:0045292 eggNOG:COG1498 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08060 SMART:SM00931 PROSITE:PS51358 KO:K12844
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785
HOGENOM:HOG000207983 PIR:T39311 RefSeq:NP_595294.1
ProteinModelPortal:O42904 IntAct:O42904 STRING:O42904
EnsemblFungi:SPBC119.13c.1 GeneID:2540045 KEGG:spo:SPBC119.13c
OMA:RDHYSIR OrthoDB:EOG4ZCXDV NextBio:20801182 Uniprot:O42904
Length = 518
Score = 183 (69.5 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 81/321 (25%), Positives = 144/321 (44%)
Query: 66 HESDNNSLNDGYQESHEDLA-KYIDALKNEEDIARCIDTDRLIDQLESIEN-------EI 117
++ D ++D Q+ ++A K+ D N E+I + +++ RL D +E E I
Sbjct: 51 NDLDITKISDSAQKLPSEVANKFND---NNENIYQLLNSTRLRDIIEGTEKYKGTEKQAI 107
Query: 118 VSN------HNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYF 171
N ++ I DS S +++ + R LH L+ + P L +V + + +Y
Sbjct: 108 TGNIEDDLEYHLIVDS-NSIAMEIDDEILR-LH-RLVKEWYHDRFPELSSLV-LNAFDYC 163
Query: 172 SLPCRLKEDLSDETQDRL-------VKVFKESPISRSWEPLPEDVLQMTMDACDRVIALD 224
L DL D ++ +L V V + + +PLP+++++ + C+ + L
Sbjct: 164 KTVSSLLNDL-DNSKTKLSFLPSATVMVIATTATTTVGKPLPDEMIKNVKNCCEAIQQLG 222
Query: 225 SEKKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS 284
EK+ + + + S++ VAPNL VVGS T L PA + LG+++
Sbjct: 223 EEKQKIIEYVQSRISVVAPNLSAVVGSTTAANLIGIAGGL-TRLGKFPACNLPALGKRRL 281
Query: 285 DNISFYE-------GYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAG 337
I G+L +E+ Q T +R++A ++ A K+ AA +D GS G
Sbjct: 282 TTIGINNPAVSGDYGFLYMSEIVQKTPPDVRKQAIRMTAAKVALAARIDSIHEYPDGSFG 341
Query: 338 RALRDEILGTIEYEIRPPKTK 358
+ R E+ IE + PP K
Sbjct: 342 ISARKEVERKIEKLLEPPSQK 362
>DICTYBASE|DDB_G0289595 [details] [associations]
symbol:prpf31 "pre-mRNA processing factor 31"
species:44689 "Dictyostelium discoideum" [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISS] [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=IEA] InterPro:IPR027105
dictyBase:DDB_G0289595 Pfam:PF01798 GenomeReviews:CM000154_GR
GO:GO:0000398 GO:GO:0046540 EMBL:AAFI02000146 eggNOG:COG1498
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 OMA:RDHYSIR
RefSeq:XP_002649103.1 EnsemblProtists:DDB0304959 GeneID:8627218
KEGG:ddi:DDB_G0289595 ProtClustDB:CLSZ2735590 Uniprot:C7G068
Length = 460
Score = 178 (67.7 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 62/219 (28%), Positives = 98/219 (44%)
Query: 157 PRLEEVVDITSAEYFSLPCRLKED---LSDETQDRLVK----VFKESPISRSWEPLPEDV 209
P LE V +Y + R+K + ++ + D L K V + S + + L ++
Sbjct: 104 PELESSVQ-NPLDYINCVKRIKNENDLINVQLNDLLPKSTIMVLLVTLSSTAGKNLTQEE 162
Query: 210 LQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLA 269
L +DACD + LD KK + L S++ ++APNL ++GS LA
Sbjct: 163 LMRVIDACDMGLELDLHKKNILHYLESRMTYIAPNLSVLMGSSIASKLIGIAGSIQ-QLA 221
Query: 270 NMPASEIEVLGRQKS--------DNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKE 321
N+PA ++ LG K N F G + ++ + ++ +A + L ++
Sbjct: 222 NIPAGHLQTLGADKKALAGFSGMSNRKFQMGLISQCDIVKKAPPFLQVKALRTLTGRVSI 281
Query: 322 AASVDLKRGDVS--GSAGRALRDEILGTIEYEIRPPKTK 358
AA VD ++ D S G GR RDEIL IE PP K
Sbjct: 282 AARVDAQQ-DSSFYGETGRQYRDEILAKIEKWQEPPPQK 319
>TAIR|locus:2016134 [details] [associations]
symbol:AT1G70400 "AT1G70400" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR027105 EMBL:CP002684 InterPro:IPR012976
Pfam:PF08060 SMART:SM00931 PANTHER:PTHR13904 IPI:IPI00938699
RefSeq:NP_001154463.1 UniGene:At.50883 ProteinModelPortal:F4I5F1
SMR:F4I5F1 EnsemblPlants:AT1G70400.3 GeneID:843376
KEGG:ath:AT1G70400 ArrayExpress:F4I5F1 Uniprot:F4I5F1
Length = 274
Score = 120 (47.3 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 86 KYIDALKNEEDIAR--CIDTDRLI----DQLESIENEIVSNHNFIRDSYRSKFGDLECLL 139
+Y D ++ E+ ++ +LI L IENEIV NFIRD YR KF +LE L+
Sbjct: 25 RYADIMQQVEEALEGSVLEYKKLIVDCKQLLVDIENEIVIVQNFIRDKYRVKFQELELLV 84
Query: 140 PRPLHYALLAKAI 152
P P+ YA + K I
Sbjct: 85 PHPIDYARVVKRI 97
Score = 89 (36.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 180 DLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKK 228
DL ++ V + ++ LPEDVL T+DACDR + LDS +K
Sbjct: 107 DLEGLLPSAMIMVLLVTALTTKGNQLPEDVLLKTIDACDRALDLDSARK 155
>RGD|1305832 [details] [associations]
symbol:Prpf31 "PRP31 pre-mRNA processing factor 31 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=IEA;ISO] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005687 "U4 snRNP" evidence=ISO]
[GO:0015030 "Cajal body" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO] [GO:0043021 "ribonucleoprotein complex binding"
evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA;ISO] [GO:0070990 "snRNP binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR027105
Pfam:PF01798 RGD:1305832 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08060 SMART:SM00931 PANTHER:PTHR13904 EMBL:AC103574
IPI:IPI00948419 Ensembl:ENSRNOT00000064433 UCSC:RGD:1305832
ArrayExpress:F1M5K0 Uniprot:F1M5K0
Length = 195
Score = 144 (55.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 37/139 (26%), Positives = 68/139 (48%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
IENE+ H FIRD Y +F +LE L+P L Y K + G L++
Sbjct: 51 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 96
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
C+ E+L + + V + + + L ++ L+ +ACD + L++ K +++
Sbjct: 97 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYE 154
Query: 233 VLTSKVVHVAPNLCEVVGS 251
+ S++ +APNL ++G+
Sbjct: 155 YVESRMSFIAPNLSIIIGA 173
>DICTYBASE|DDB_G0285679 [details] [associations]
symbol:nol5a "NOP5 family protein" species:44689
"Dictyostelium discoideum" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0285679 Pfam:PF01798 GO:GO:0005730
GenomeReviews:CM000153_GR EMBL:AAFI02000079 GO:GO:0006364
GO:GO:0005732 eggNOG:COG1498 KO:K14564 InterPro:IPR012974
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08156 Pfam:PF08060
SMART:SM00931 PROSITE:PS51358 RefSeq:XP_638211.1
ProteinModelPortal:Q54MT2 STRING:Q54MT2 PRIDE:Q54MT2
EnsemblProtists:DDB0237576 GeneID:8625259 KEGG:ddi:DDB_G0285679
OMA:DSMVNDT ProtClustDB:CLSZ2430191 Uniprot:Q54MT2
Length = 540
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 61/248 (24%), Positives = 107/248 (43%)
Query: 110 LESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAE 169
LE ++ ++ + +R+ Y F +L ++ +H+A LAK I EE +D
Sbjct: 173 LEQLDKDLNTFFMRLREWYSWHFPELLKIIESQVHFAKLAKLIQNKKNLTEESLD----- 227
Query: 170 YFSLPCRLKEDLSDETQDRLVK-VFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKK 228
+KE L D + L K V + S + D++ + M DRVI+LD +
Sbjct: 228 ------EIKEILEDN--ESLAKDVLSAAKASMGGDISQIDLVTV-MHFADRVISLDEYRT 278
Query: 229 MLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS-DNI 287
L L K+ +APNL +VG T+LA PAS +++LG +K+
Sbjct: 279 NLTQYLAKKMQDIAPNLSALVGDRIGAKLISRAGSL-TSLAKYPASTVQILGAEKALFRA 337
Query: 288 SFYEGYLESTEM-FQATTLCM----RERARQLLAEKLKEAASVDLKRGDVSGSAGRALRD 342
G + F A+ + + R + L+ K+ A +D + + G AL+
Sbjct: 338 MKVRGKTPKYGIIFNASAVSSETKNKGRIARCLSNKISIATRIDCFSDNPTAKFGVALKQ 397
Query: 343 EILGTIEY 350
++ I++
Sbjct: 398 QVADRIKF 405
>TAIR|locus:2087755 [details] [associations]
symbol:AT3G12860 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0006606 "protein import into
nucleus" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] Pfam:PF01798 EMBL:CP002686
GO:GO:0003676 GO:GO:0030529 EMBL:AB024033 HOGENOM:HOG000196309
KO:K14564 InterPro:IPR012974 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08156 Pfam:PF08060 SMART:SM00931 OMA:QEAPQEN HSSP:O28191
IPI:IPI00527919 RefSeq:NP_187892.2 UniGene:At.53283
ProteinModelPortal:Q9LTV0 SMR:Q9LTV0 STRING:Q9LTV0 PRIDE:Q9LTV0
EnsemblPlants:AT3G12860.1 GeneID:820468 KEGG:ath:AT3G12860
TAIR:At3g12860 InParanoid:Q9LTV0 PhylomeDB:Q9LTV0
ProtClustDB:CLSN2682875 ArrayExpress:Q9LTV0 Genevestigator:Q9LTV0
Uniprot:Q9LTV0
Length = 499
Score = 140 (54.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 60/252 (23%), Positives = 111/252 (44%)
Query: 107 IDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDIT 166
I L++++ +I S +R+ Y F +L ++ YA ++K I VD +
Sbjct: 175 IFMLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYAKVSKII----------VDKS 224
Query: 167 SAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSE 226
+P L E L DE D+ +V + S + P D++ + A RV+ L
Sbjct: 225 KLSEEHIPM-LTEALGDE--DKAREVIEAGKASMGQDLSPVDLINVQTFA-QRVMDLADY 280
Query: 227 KKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS-- 284
+K L+D L +K+ +APNL ++G TNLA P+S +++LG +K+
Sbjct: 281 RKKLYDYLVTKMSDIAPNLAALIGEMVGARLISHAGSL-TNLAKCPSSTLQILGAEKALF 339
Query: 285 ------DNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGR 338
N Y G + + + + R + LA K A+ +D + + + G
Sbjct: 340 RALKTRGNTPKY-GLIFHSSFIGRASAKNKGRIARFLANKCSIASRIDCFSDNSTTAFGE 398
Query: 339 ALRDEILGTIEY 350
LR+++ +++
Sbjct: 399 KLREQVEERLDF 410
>TAIR|locus:2205270 [details] [associations]
symbol:NOP56 "homolog of nucleolar protein NOP56"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] Pfam:PF01798 EMBL:CP002684
GO:GO:0009506 GO:GO:0005618 GO:GO:0005730 UniGene:At.48973
EMBL:AC009894 HOGENOM:HOG000196309 KO:K14564 InterPro:IPR012974
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08156 Pfam:PF08060
SMART:SM00931 HSSP:O28191 ProtClustDB:CLSN2682875 EMBL:AF302492
EMBL:AY039541 EMBL:AY102151 EMBL:AY087080 IPI:IPI00548989
PIR:D96602 RefSeq:NP_176007.1 UniGene:At.22033
ProteinModelPortal:Q9SGT7 SMR:Q9SGT7 IntAct:Q9SGT7 STRING:Q9SGT7
PRIDE:Q9SGT7 EnsemblPlants:AT1G56110.1 GeneID:842063
KEGG:ath:AT1G56110 TAIR:At1g56110 InParanoid:Q9SGT7 OMA:GSHITEA
PhylomeDB:Q9SGT7 Genevestigator:Q9SGT7 Uniprot:Q9SGT7
Length = 522
Score = 136 (52.9 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 58/252 (23%), Positives = 109/252 (43%)
Query: 107 IDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDIT 166
I L++++ +I S +R+ Y F +L ++ YA ++K I E+ + +
Sbjct: 175 IFMLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYARVSKMIDDKSKLTEDHIPM- 233
Query: 167 SAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSE 226
L E L DE D+ +V + S + P D++ + A +V+ L
Sbjct: 234 ----------LTEVLGDE--DKAKEVIEAGKASMGSDLSPLDLINVQTFA-QKVMDLADY 280
Query: 227 KKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS-- 284
+K L+D L +K+ +APNL ++G TNLA P+S +++LG +K+
Sbjct: 281 RKKLYDYLVTKMSDIAPNLAALIGEMVGARLISHAGSL-TNLAKCPSSTLQILGAEKALF 339
Query: 285 ------DNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGR 338
N Y G + + + + R + LA K A+ +D + + G
Sbjct: 340 RALKTRGNTPKY-GLIFHSSFIGRASAKNKGRIARYLANKCSIASRIDCFADGATTAFGE 398
Query: 339 ALRDEILGTIEY 350
LR+++ +E+
Sbjct: 399 KLREQVEERLEF 410
>SGD|S000003323 [details] [associations]
symbol:PRP31 "Splicing factor" species:4932 "Saccharomyces
cerevisiae" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0000387 "spliceosomal snRNP assembly" evidence=IMP;IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA;IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IPI]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR027105
SGD:S000003323 Pfam:PF01798 GO:GO:0005739 EMBL:BK006941
GO:GO:0005681 GO:GO:0003723 GO:GO:0000387 GO:GO:0046540
eggNOG:COG1498 InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060
PROSITE:PS51358 GeneTree:ENSGT00550000075069 KO:K12844
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785 OrthoDB:EOG4ZCXDV
EMBL:U31970 EMBL:Z72876 EMBL:AY723814 PIR:S64386 RefSeq:NP_011605.1
ProteinModelPortal:P49704 SMR:P49704 DIP:DIP-5355N IntAct:P49704
MINT:MINT-493013 STRING:P49704 PaxDb:P49704 EnsemblFungi:YGR091W
GeneID:852983 KEGG:sce:YGR091W CYGD:YGR091w HOGENOM:HOG000000957
OMA:HRISEAN NextBio:972794 Genevestigator:P49704 GermOnline:YGR091W
Uniprot:P49704
Length = 494
Score = 128 (50.1 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 54/229 (23%), Positives = 98/229 (42%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
I++ I HNF+ Y +F +L L+P PL Y+ + + E ++ +F
Sbjct: 105 IKSNIKLMHNFLISLYSRRFPELSSLIPSPLQYSKVISILENENYSKNESDEL----FFH 160
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
L + K L+ E L K S ++ EPL ++A + L ++ +
Sbjct: 161 LENKAK--LTREQILVLTMSMKTS--FKNKEPLDIKTRTQILEANSILENLWKLQEDIGQ 216
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKSDNISFY-- 290
+ SK+ +APN+C +VG + +P+ I +G+ K + +
Sbjct: 217 YIASKISIIAPNVCFLVGPEIAAQLIAHAGGVL-EFSRIPSCNIASIGKNKHLSHELHTL 275
Query: 291 ------EGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDL--KRGD 331
EGYL +++M Q + + ++ ++L K+ AA VD K GD
Sbjct: 276 ESGVRQEGYLFASDMIQKFPVSVHKQMLRMLCAKVSLAARVDAGQKNGD 324
>WB|WBGene00022458 [details] [associations]
symbol:prp-31 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0018996 "molting cycle,
collagen and cuticulin-based cuticle" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR027105 Pfam:PF01798
GO:GO:0009792 GO:GO:0002009 GO:GO:0016477 GO:GO:0008406
GO:GO:0018996 GO:GO:0042127 EMBL:FO080728 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 GO:GO:0001703 eggNOG:COG1498
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060 SMART:SM00931
GeneTree:ENSGT00550000075069 KO:K12844 OMA:VESDPEY
InterPro:IPR019175 PANTHER:PTHR13904 Pfam:PF09785
HOGENOM:HOG000207983 RefSeq:NP_491527.1 ProteinModelPortal:Q9N592
SMR:Q9N592 STRING:Q9N592 PaxDb:Q9N592 EnsemblMetazoa:Y110A7A.8
GeneID:172146 KEGG:cel:CELE_Y110A7A.8 UCSC:Y110A7A.8.2 CTD:172146
WormBase:Y110A7A.8 InParanoid:Q9N592 NextBio:874215 Uniprot:Q9N592
Length = 504
Score = 128 (50.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 64/326 (19%), Positives = 126/326 (38%)
Query: 47 DVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDIARCIDTD-- 104
D + + P + H+ + +D Y + L + ++E + ++ D
Sbjct: 39 DDIEEATEEPMDTTKYASVHDVAKLARSDEYLALVKQLEVELKRPQDEVKVTAPLEADPQ 98
Query: 105 -RLIDQLE----SIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRL 159
+LI +L I+NEI H F+RD Y +F +LE L+P L Y LA + G +
Sbjct: 99 YKLIVKLSHVAADIDNEINVIHKFVRDKYEKRFPELETLVPNALTY--LA-TVQLLGNEI 155
Query: 160 EEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDR 219
V +KE L V + + L + L+ MDAC+
Sbjct: 156 NSKV-------------VKEQLGGILDASTCMVVSVTVSTTQGVKLEPNELETVMDACNL 202
Query: 220 VIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXT-------NLANMP 272
L + + ++ ++ +APNL ++GS N+ +
Sbjct: 203 AAQLHVNRLEMHQLVEWRMALIAPNLVALLGSTTTAHLVSQAGGLSPLATMPSCNVQVLG 262
Query: 273 ASEIEVLGRQKSDNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDV 332
++ ++G + + + + G++ ++ Q ++ +A ++LA K+ A +D +
Sbjct: 263 KTKKNLIGFS-TVSTNPHHGFIYFHQLVQKMPPDLKNKAAKILAAKVTLVARIDAQHESS 321
Query: 333 SGSAGRALRDEILGTIEYEIRPPKTK 358
+G G + E + PP K
Sbjct: 322 NGEKGAEFLALVESKFEKMLEPPPVK 347
>FB|FBgn0026196 [details] [associations]
symbol:nop5 "nop5" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] Pfam:PF01798 GO:GO:0005730 EMBL:AE014134 GO:GO:0006364
InterPro:IPR012974 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08156 Pfam:PF08060 SMART:SM00931 KO:K14565 OMA:DAHEQLA
GeneTree:ENSGT00550000074998 FlyBase:FBgn0026196 EMBL:AY061401
EMBL:FM245448 EMBL:FM245453 RefSeq:NP_477412.1 UniGene:Dm.3320
SMR:Q9VM69 IntAct:Q9VM69 MINT:MINT-335173 STRING:Q9VM69
EnsemblMetazoa:FBtr0079369 GeneID:33966 KEGG:dme:Dmel_CG10206
UCSC:CG10206-RA CTD:33966 InParanoid:Q9VM69 GenomeRNAi:33966
NextBio:786179 Uniprot:Q9VM69
Length = 511
Score = 126 (49.4 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 33/106 (31%), Positives = 56/106 (52%)
Query: 180 DLSDETQDRLVKVFKESP-ISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKV 238
DLSD + + + KE+ IS E EDVL + CD +I+++ + L+D L +++
Sbjct: 222 DLSDILPEDVEEKVKEAAEISMGTEISEEDVLNIQC-LCDEIISINDYRTHLYDYLKARM 280
Query: 239 VHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS 284
+ +APNL +VG NLA P+S +++LG +K+
Sbjct: 281 MAMAPNLTVLVGDTVGARLIAHAGSLI-NLAKHPSSTVQILGAEKA 325
>GENEDB_PFALCIPARUM|PFD0450c [details] [associations]
symbol:PFD0450c "pre-mrna splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR027105 Pfam:PF01798 GO:GO:0008380
GO:GO:0005681 EMBL:AL844503 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08060 SMART:SM00931 KO:K12844 InterPro:IPR019175
PANTHER:PTHR13904 Pfam:PF09785 HOGENOM:HOG000207983
RefSeq:XP_002808648.1 EnsemblProtists:PFD0450c:mRNA GeneID:812409
KEGG:pfa:PFD0450c EuPathDB:PlasmoDB:PF3D7_0409100
ProtClustDB:CLSZ2433500 Uniprot:C0H4A0
Length = 534
Score = 125 (49.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 66/291 (22%), Positives = 119/291 (40%)
Query: 88 IDALKNEEDIARC--IDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHY 145
I+ L E+D + ID D+ + + N NF D K +E +L
Sbjct: 113 IEVLLKEKDSNKINNIDNDKFNNNNNN-NNSSSDEDNFYDDVMIEKC--METILKIDTEI 169
Query: 146 ALLAKAI----STAGPRLEEVVDITSAEYFSLPCRLKE-------DLSDETQDRLVKVFK 194
+ K + ST P L+ +V + EY S+ +++ D SD + V
Sbjct: 170 LNIHKYVKDIYSTKFPELDSIV-YSPVEYISVVNKIRNEVDLKNIDFSDILPNTTVMAIT 228
Query: 195 ESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSXXX 254
+ + LP+++L+ + C+ I L+ + ++ L SK+ ++APN+ ++GS
Sbjct: 229 VASSMTTGICLPDNLLKNCISFCNEGIQLNEYRNIILLYLESKMFYLAPNVTMLLGSSLT 288
Query: 255 XXXXXXXXXXXTNLANMPASEIEVLGRQKSD-----NI--SFYEGYLESTEMFQATTLCM 307
NL+ + + + V+ K N+ + G L +E+ Q+
Sbjct: 289 ARLISAVGSLK-NLSIISSQNLIVIASTKKSLFGLSNVHKTLGIGILCCSEIVQSVPDAY 347
Query: 308 RERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTK 358
+++A LLA K AA +D + G G LR I+ + PP K
Sbjct: 348 KKKAISLLASKCSLAARIDYFKKYKEGQYGLLLRQYIISHLIKLQEPPPLK 398
Score = 39 (18.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 70 NNSLNDGYQESHEDLAKYIDALKNEE 95
NN + D + +E++ I+ NE+
Sbjct: 37 NNRMEDEDNDDYEEIVDAIEEFLNEK 62
>UNIPROTKB|C0H4A0 [details] [associations]
symbol:PFD0450c "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR027105 Pfam:PF01798 GO:GO:0008380 GO:GO:0005681
EMBL:AL844503 InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08060
SMART:SM00931 KO:K12844 InterPro:IPR019175 PANTHER:PTHR13904
Pfam:PF09785 HOGENOM:HOG000207983 RefSeq:XP_002808648.1
EnsemblProtists:PFD0450c:mRNA GeneID:812409 KEGG:pfa:PFD0450c
EuPathDB:PlasmoDB:PF3D7_0409100 ProtClustDB:CLSZ2433500
Uniprot:C0H4A0
Length = 534
Score = 125 (49.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 66/291 (22%), Positives = 119/291 (40%)
Query: 88 IDALKNEEDIARC--IDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHY 145
I+ L E+D + ID D+ + + N NF D K +E +L
Sbjct: 113 IEVLLKEKDSNKINNIDNDKFNNNNNN-NNSSSDEDNFYDDVMIEKC--METILKIDTEI 169
Query: 146 ALLAKAI----STAGPRLEEVVDITSAEYFSLPCRLKE-------DLSDETQDRLVKVFK 194
+ K + ST P L+ +V + EY S+ +++ D SD + V
Sbjct: 170 LNIHKYVKDIYSTKFPELDSIV-YSPVEYISVVNKIRNEVDLKNIDFSDILPNTTVMAIT 228
Query: 195 ESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSXXX 254
+ + LP+++L+ + C+ I L+ + ++ L SK+ ++APN+ ++GS
Sbjct: 229 VASSMTTGICLPDNLLKNCISFCNEGIQLNEYRNIILLYLESKMFYLAPNVTMLLGSSLT 288
Query: 255 XXXXXXXXXXXTNLANMPASEIEVLGRQKSD-----NI--SFYEGYLESTEMFQATTLCM 307
NL+ + + + V+ K N+ + G L +E+ Q+
Sbjct: 289 ARLISAVGSLK-NLSIISSQNLIVIASTKKSLFGLSNVHKTLGIGILCCSEIVQSVPDAY 347
Query: 308 RERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTK 358
+++A LLA K AA +D + G G LR I+ + PP K
Sbjct: 348 KKKAISLLASKCSLAARIDYFKKYKEGQYGLLLRQYIISHLIKLQEPPPLK 398
Score = 39 (18.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 70 NNSLNDGYQESHEDLAKYIDALKNEE 95
NN + D + +E++ I+ NE+
Sbjct: 37 NNRMEDEDNDDYEEIVDAIEEFLNEK 62
>ASPGD|ASPL0000040023 [details] [associations]
symbol:AN10352 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0032040
"small-subunit processome" evidence=IEA] [GO:0031428 "box C/D
snoRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006364 "rRNA processing" evidence=IEA]
Pfam:PF01798 EMBL:BN001306 GO:GO:0030686 GO:GO:0006364
GO:GO:0032040 GO:GO:0031428 HOGENOM:HOG000196309 InterPro:IPR012974
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08156 Pfam:PF08060
SMART:SM00931 OMA:QEAPQEN EnsemblFungi:CADANIAT00010009
Uniprot:C8VIQ3
Length = 510
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 62/280 (22%), Positives = 110/280 (39%)
Query: 94 EEDIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAIS 153
+ D I ++DQL+ N +R+ Y F +L ++ YA LA I
Sbjct: 168 QRDDNHIIQAIAILDQLDKAINTFSMR---VREWYSWHFPELIKIVSDNQRYAQLALFI- 223
Query: 154 TAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMT 213
++ +T + +++D + ++ K S + + E ++
Sbjct: 224 ------KDKKTLTDENLHDIAALVEDD--EGVAQSIIDAAKRS----MGQDISESDMENV 271
Query: 214 MDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPA 273
+ RV++L +K L L SK+ VAPNL ++G TNL+ PA
Sbjct: 272 ISFAQRVVSLSKYRKSLHSYLVSKMNVVAPNLAALIGDIVGARLISHAGSL-TNLSKYPA 330
Query: 274 SEIEVLGRQKS--------DNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASV 325
S +++LG +K+ N Y G L + + R + LA K A+ +
Sbjct: 331 STVQILGAEKALFRALKTKGNTPKY-GLLYHSSFIGRAGPKNKGRISRFLANKCSIASRI 389
Query: 326 DLKRGDVSGSAGRALRDEILGTIE-YEIRPPKTKFQLRRK 364
D + G AL+ ++ +E Y P TK ++ K
Sbjct: 390 DNFSDTPTTKYGDALKKQVEERLEFYATGAPPTKNEVAMK 429
>TAIR|locus:2181211 [details] [associations]
symbol:AT5G27120 "AT5G27120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
Pfam:PF01798 GO:GO:0009506 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0005730 GO:GO:0042254 EMBL:AF007271 eggNOG:COG1498
InterPro:IPR012974 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08156 Pfam:PF08060 SMART:SM00931 PROSITE:PS51358 KO:K14565
HOGENOM:HOG000196310 OMA:DLRTTPK EMBL:AF302490 EMBL:AY074281
EMBL:AY096684 EMBL:BT002060 IPI:IPI00520435 PIR:T01807
RefSeq:NP_198064.1 UniGene:At.10285 UniGene:At.55031
ProteinModelPortal:O04658 SMR:O04658 STRING:O04658 PaxDb:O04658
PRIDE:O04658 EnsemblPlants:AT5G27120.1 GeneID:832770
KEGG:ath:AT5G27120 TAIR:At5g27120 InParanoid:O04658
PhylomeDB:O04658 ProtClustDB:CLSN2684456 Genevestigator:O04658
Uniprot:O04658
Length = 533
Score = 121 (47.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 33/108 (30%), Positives = 53/108 (49%)
Query: 178 KEDLSDETQDRLVKVFKESP-ISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTS 236
K D S+ D + KE+ IS E D+L + + CD+V++L + L+D L S
Sbjct: 217 KLDFSEILADEIEAELKEAAVISMGTEVSDLDLLHIR-ELCDQVLSLAEYRAQLYDYLKS 275
Query: 237 KVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS 284
++ +APNL +VG NLA P S +++LG +K+
Sbjct: 276 RMNTIAPNLTALVGELVGARLISHGGSLL-NLAKQPGSTVQILGAEKA 322
Score = 42 (19.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 73 LNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIE 114
LN+G + EDL K + + + D+ + E++E
Sbjct: 17 LNEGKLSNVEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALE 58
>WB|WBGene00020915 [details] [associations]
symbol:nol-5 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040019 "positive
regulation of embryonic development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] Pfam:PF01798
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040035 GO:GO:0040019 GO:GO:0040027
eggNOG:COG1498 InterPro:IPR012974 InterPro:IPR012976
InterPro:IPR002687 Pfam:PF08156 Pfam:PF08060 SMART:SM00931
KO:K14565 HOGENOM:HOG000196310 OMA:DAHEQLA
GeneTree:ENSGT00550000074998 EMBL:FO081759 PIR:T32941
RefSeq:NP_491134.1 HSSP:O28191 ProteinModelPortal:O45012 SMR:O45012
STRING:O45012 PaxDb:O45012 EnsemblMetazoa:W01B11.3.1
EnsemblMetazoa:W01B11.3.2 EnsemblMetazoa:W01B11.3.3 GeneID:171901
KEGG:cel:CELE_W01B11.3 UCSC:W01B11.3 CTD:171901 WormBase:W01B11.3
InParanoid:O45012 NextBio:873175 Uniprot:O45012
Length = 487
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 84/347 (24%), Positives = 142/347 (40%)
Query: 30 VLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDL-AKYI 88
+L+ +VD + +L G L L K + + H+S N L G + EDL A++
Sbjct: 75 LLKSSVDETE-KLAVGDAKLGNLIK---EKLSLNCVHDSSINELMRGVRAHIEDLLAEHK 130
Query: 89 DALKNEE-DIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPR--PLHY 145
+ + +A + ++ E I+ IV + + D + + + H+
Sbjct: 131 EEMNAMNLAVAHSLARYKVKFNPEKIDTMIVQAVSLL-DDLDKELNNYVMRVREWYGWHF 189
Query: 146 ALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLV-KVFKESPISRSWEP 204
L K I + I A C + DLS + L KV +++ IS +
Sbjct: 190 PELGKTIQDH----QAYAKIIKAIGMRQNC-INTDLSSILPEELEEKVKEDAEISMGTDI 244
Query: 205 LPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXX 264
D++ + CD+VI L + + LFD L +++ +APNL ++G
Sbjct: 245 SDIDLIHIK-GLCDQVIELSAYRAQLFDYLKNRMTALAPNLTVLLGELVGARLISHAGSL 303
Query: 265 XTNLANMPASEIEVLGRQKS--------DNISFYEGYLESTEMF-QATTLCMRERARQLL 315
+LA PAS I++LG +K+ + Y G + ++ QA + AR+L
Sbjct: 304 -VSLAKAPASTIQILGAEKALFRALKTKKDTPKY-GLIYHAQLITQAPPKVKGKMARKLA 361
Query: 316 AEKLKEAASVD-LKRGDVSGSAG---RALRDEILGTIEYEIRPPKTK 358
A K A +D L + G RA + +L T E E P K K
Sbjct: 362 A-KCSLATRIDALSDESATNEIGIECRAALENVLRT-ESERGPSKNK 406
>POMBASE|SPBC646.10c [details] [associations]
symbol:SPBC646.10c "U3 snoRNP protein Nop56 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO;IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISO]
Pfam:PF01798 PomBase:SPBC646.10c GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0006364 GO:GO:0030532 GO:GO:0005732
eggNOG:COG1498 HOGENOM:HOG000196309 KO:K14564 InterPro:IPR012974
InterPro:IPR012976 InterPro:IPR002687 Pfam:PF08156 Pfam:PF08060
SMART:SM00931 PROSITE:PS51358 PIR:T40586 RefSeq:NP_595368.1
ProteinModelPortal:O94514 IntAct:O94514 STRING:O94514
EnsemblFungi:SPBC646.10c.1 GeneID:2541087 KEGG:spo:SPBC646.10c
OMA:QQLHEYI OrthoDB:EOG42FWS6 NextBio:20802200 Uniprot:O94514
Length = 497
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 51/214 (23%), Positives = 92/214 (42%)
Query: 144 HYALLAKAISTAGPRLEEVVDITSA-EYFSLPCRLKEDLS---DETQDRLVKVFKESPIS 199
H+ L+K + G + V +T + ++ + DL+ D+ +D + +S
Sbjct: 198 HFPELSKIV---GDNYKYAVIVTLVGDKTTINDEMLHDLAAVVDDDKDIAQSIINAGKVS 254
Query: 200 RSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXX 259
+ + E L+ + +RVI L + +K L + L K+ VAPNL E++G
Sbjct: 255 MG-QDISEIDLENILSFAERVIKLSNYRKQLHNYLVQKMNVVAPNLAELIGEMVGARLIS 313
Query: 260 XXXXXXTNLANMPASEIEVLGRQKS--------DNISFYEGYLESTEMFQATTLCMRERA 311
TNL+ PAS +++LG +K+ N Y G + + + R
Sbjct: 314 HAGSL-TNLSKCPASTVQILGAEKALFRALKTRGNTPKY-GIIYHSSFIGKAGAKNKGRI 371
Query: 312 RQLLAEKLKEAASVDLKRGDVSGSA-GRALRDEI 344
+ LA K A+ +D D +A G+ LR ++
Sbjct: 372 SRFLANKCSIASRID-NFSDAPTTAFGQVLRRQV 404
>SGD|S000004187 [details] [associations]
symbol:NOP56 "Nucleolar protein component of the box C/D
snoRNP complexes" species:4932 "Saccharomyces cerevisiae"
[GO:0032040 "small-subunit processome" evidence=IDA] [GO:0031428
"box C/D snoRNP complex" evidence=IDA;IPI] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0000154 "rRNA modification"
evidence=TAS] [GO:0030686 "90S preribosome" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] SGD:S000004187
Pfam:PF01798 EMBL:BK006945 GO:GO:0030686 GO:GO:0032040 EMBL:U14913
GO:GO:0000154 GO:GO:0031428 eggNOG:COG1498 HOGENOM:HOG000196309
KO:K14564 InterPro:IPR012974 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08156 Pfam:PF08060 SMART:SM00931 PROSITE:PS51358 OMA:QEAPQEN
GeneTree:ENSGT00550000075068 OrthoDB:EOG42FWS6 EMBL:U20237
PIR:S48550 RefSeq:NP_013298.1 ProteinModelPortal:Q12460 SMR:Q12460
DIP:DIP-4405N IntAct:Q12460 MINT:MINT-525679 STRING:Q12460
PaxDb:Q12460 PeptideAtlas:Q12460 EnsemblFungi:YLR197W GeneID:850894
KEGG:sce:YLR197W CYGD:YLR197w NextBio:967272 Genevestigator:Q12460
GermOnline:YLR197W Uniprot:Q12460
Length = 504
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 63/265 (23%), Positives = 106/265 (40%)
Query: 106 LIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDI 165
L+DQL+ N +++ Y F +L L+P +A L I ++ +
Sbjct: 180 LLDQLDKDINTFAMR---VKEWYGWHFPELAKLVPDNYTFAKLVLFI-------KDKASL 229
Query: 166 TSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDS 225
L L ED S Q +V + IS + D+ + + A RV +L
Sbjct: 230 NDDSLHDLAALLNED-SGIAQ----RVIDNARISMGQDISETDMENVCVFA-QRVASLAD 283
Query: 226 EKKMLFDVLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS- 284
++ L+D L K+ VAPNL E++G TNL+ AS +++LG +K+
Sbjct: 284 YRRQLYDYLCEKMHTVAPNLSELIGEVIGARLISHAGSL-TNLSKQAASTVQILGAEKAL 342
Query: 285 -------DNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAG 337
N Y G + + + + R + LA K A+ +D + S G
Sbjct: 343 FRALKTKGNTPKY-GLIYHSGFISKASAKNKGRISRYLANKCSMASRIDNYSEEPSNVFG 401
Query: 338 RALRDEILGTIE-YEIRPPKTKFQL 361
L+ ++ +E Y P K +L
Sbjct: 402 SVLKKQVEQRLEFYNTGKPTLKNEL 426
>UNIPROTKB|E1BUS2 [details] [associations]
symbol:NOP58 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0015030
"Cajal body" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0070761 "pre-snoRNP complex" evidence=IEA]
Pfam:PF01798 GO:GO:0005737 GO:GO:0030515 GO:GO:0015030
GO:GO:0070761 GO:GO:0005732 InterPro:IPR012974 InterPro:IPR012976
InterPro:IPR002687 Pfam:PF08156 Pfam:PF08060 SMART:SM00931
KO:K14565 CTD:51602 OMA:DAHEQLA GeneTree:ENSGT00550000074998
EMBL:AADN02019867 EMBL:AADN02019868 IPI:IPI00582637
RefSeq:XP_421942.1 UniGene:Gga.12235 PRIDE:E1BUS2
Ensembl:ENSGALT00000013776 GeneID:424087 KEGG:gga:424087
NextBio:20826466 Uniprot:E1BUS2
Length = 527
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 180 DLSDETQDRLVKVFKESP-ISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKV 238
D+SD + + + K + IS E ED+ + + CD+VI + + L+D L +++
Sbjct: 222 DVSDILPEEIEEDVKAAAEISMGTEVSEEDINNI-IHLCDQVIEISEYRTQLYDYLKNRM 280
Query: 239 VHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS 284
+ +APNL +VG NLA PAS +++LG +K+
Sbjct: 281 MAIAPNLTVMVGELVGARLIAHAGSLL-NLAKHPASTVQILGAEKA 325
>UNIPROTKB|G4N2E5 [details] [associations]
symbol:MGG_07915 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0000154 "rRNA modification"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0030490 "maturation of SSU-rRNA" evidence=ISS] [GO:0031428 "box
C/D snoRNP complex" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] Pfam:PF01798 EMBL:CM001233 GO:GO:0030686
GO:GO:0032040 GO:GO:0030490 GO:GO:0000154 GO:GO:0031428 KO:K14564
InterPro:IPR012974 InterPro:IPR012976 InterPro:IPR002687
Pfam:PF08156 Pfam:PF08060 SMART:SM00931 RefSeq:XP_003713157.1
ProteinModelPortal:G4N2E5 EnsemblFungi:MGG_07915T0 GeneID:2683842
KEGG:mgr:MGG_07915 Uniprot:G4N2E5
Length = 514
Score = 118 (46.6 bits), Expect = 0.00048, P = 0.00048
Identities = 42/176 (23%), Positives = 76/176 (43%)
Query: 183 DETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVA 242
DE D+ + + +S + + E ++M V + + +K+L + L SK+ VA
Sbjct: 245 DEDGDKAQAIIDAAKVSMG-QDISEPDVEMVKSFATSVSKMAAYRKVLAESLDSKMGIVA 303
Query: 243 PNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS--------DNISFYEGYL 294
PNL ++G+ TNL+ PAS +++LG +K+ N Y G +
Sbjct: 304 PNLQCILGTPVAARLISHAGSL-TNLSKYPASTLQILGAEKALFRALKTKGNTPKY-GLI 361
Query: 295 ESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEY 350
+ + + R + LA K A+ +D S G ALR ++ +E+
Sbjct: 362 YQSSFISRASARQKGRISRFLANKCSIASRIDNFSEQPSSRFGEALRQQLEDRLEF 417
>TAIR|locus:2096214 [details] [associations]
symbol:AT3G05060 "AT3G05060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006164 "purine nucleotide biosynthetic process"
evidence=RCA] [GO:0009165 "nucleotide biosynthetic process"
evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] Pfam:PF01798 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020 GO:GO:0042254
EMBL:AC009177 eggNOG:COG1498 InterPro:IPR012974 InterPro:IPR012976
InterPro:IPR002687 Pfam:PF08156 Pfam:PF08060 SMART:SM00931
PROSITE:PS51358 KO:K14565 HOGENOM:HOG000196310 OMA:DAHEQLA
ProtClustDB:CLSN2684456 EMBL:AF302491 EMBL:AF412080 IPI:IPI00543036
RefSeq:NP_187157.1 UniGene:At.16937 ProteinModelPortal:Q9MAB3
SMR:Q9MAB3 STRING:Q9MAB3 PaxDb:Q9MAB3 PRIDE:Q9MAB3
EnsemblPlants:AT3G05060.1 GeneID:819668 KEGG:ath:AT3G05060
TAIR:At3g05060 InParanoid:Q9MAB3 PhylomeDB:Q9MAB3
Genevestigator:Q9MAB3 Uniprot:Q9MAB3
Length = 533
Score = 116 (45.9 bits), Expect = 0.00083, P = 0.00083
Identities = 31/108 (28%), Positives = 53/108 (49%)
Query: 178 KEDLSDETQDRLVKVFKESP-ISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTS 236
K D S+ D + K++ IS E D+L + + CD+V++L + L+D L S
Sbjct: 218 KLDFSEILADEIEADLKDAAVISMGTEVSDLDLLHIR-ELCDQVLSLSEYRAQLYDYLKS 276
Query: 237 KVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKS 284
++ +APNL +VG NL+ P S +++LG +K+
Sbjct: 277 RMNTIAPNLTALVGELVGARLISHGGSLL-NLSKQPGSTVQILGAEKA 323
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 368 354 0.00079 117 3 11 22 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 612 (65 KB)
Total size of DFA: 223 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.55u 0.23s 32.78t Elapsed: 00:00:02
Total cpu time: 32.56u 0.23s 32.79t Elapsed: 00:00:02
Start: Sat May 11 09:04:01 2013 End: Sat May 11 09:04:03 2013