Query 036298
Match_columns 368
No_of_seqs 178 out of 643
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 11:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2572 Ribosome biogenesis pr 100.0 1.6E-86 3.4E-91 655.0 18.7 312 12-356 39-401 (498)
2 KOG2573 Ribosome biogenesis pr 100.0 3E-84 6.4E-89 638.9 20.6 328 8-354 38-413 (498)
3 COG1498 SIK1 Protein implicate 100.0 3.4E-78 7.5E-83 600.2 21.8 266 70-357 66-359 (395)
4 PRK14552 C/D box methylation g 100.0 7.8E-77 1.7E-81 599.2 24.2 294 33-363 62-391 (414)
5 KOG2574 mRNA splicing factor P 100.0 1.9E-70 4.2E-75 543.6 19.0 274 72-362 59-346 (492)
6 PF01798 Nop: Putative snoRNA 100.0 2.9E-53 6.2E-58 376.8 8.6 142 212-354 1-150 (150)
7 PF08060 NOSIC: NOSIC (NUC001) 99.8 2.3E-21 5E-26 144.8 5.5 51 104-154 3-53 (53)
8 PF14918 MTBP_N: MDM2-binding 83.5 1.8 4E-05 42.3 4.9 103 18-144 87-204 (271)
9 PF08156 NOP5NT: NOP5NT (NUC12 51.8 11 0.00024 29.4 2.1 30 9-39 37-66 (67)
10 KOG2014 SMT3/SUMO-activating c 50.5 17 0.00038 36.8 3.6 58 204-263 246-304 (331)
11 KOG0989 Replication factor C, 31.4 1.7E+02 0.0037 30.1 7.2 103 26-137 208-322 (346)
12 KOG3365 NADH:ubiquinone oxidor 29.6 25 0.00055 31.7 1.0 38 117-155 46-83 (145)
13 TIGR02397 dnaX_nterm DNA polym 29.2 5.3E+02 0.011 25.0 10.2 112 7-133 177-296 (355)
14 PF15005 IZUMO: Izumo sperm-eg 26.7 1.3E+02 0.0028 27.7 5.0 17 36-52 7-23 (160)
15 TIGR03738 PRTRC_C PRTRC system 25.6 39 0.00085 26.9 1.3 17 122-138 26-42 (66)
16 PF00601 Flu_NS2: Influenza no 24.8 1E+02 0.0022 26.0 3.6 52 72-123 41-92 (94)
17 PRK14971 DNA polymerase III su 23.8 6E+02 0.013 27.9 10.3 45 8-52 182-226 (614)
18 smart00096 UTG Uteroglobin. 21.2 1.1E+02 0.0023 24.5 3.0 41 73-113 10-63 (69)
No 1
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-86 Score=655.04 Aligned_cols=312 Identities=22% Similarity=0.309 Sum_probs=290.3
Q ss_pred HHHHhhhccCCCCCCcHHHHHh------------------------hhhhcChhhhhhhhhhhhhhcCCCCCceeecccc
Q 036298 12 EKIVKSTCSSSWKPLPEDVLQK------------------------TVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHE 67 (368)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~~ 67 (368)
.+.||+.+|.+|.++.+ +|.+ ++.++|++|+. .|.+ +++++||.
T Consensus 39 ~~~~kl~~f~kf~~ta~-alea~~~l~eGkvs~~L~k~lk~~~~~etLaVaD~KLgn------~i~e--kL~~~~v~--- 106 (498)
T KOG2572|consen 39 LKMVKLVAFEKFDSTAE-ALEAVTALAEGKVSSGLEKFLKLNKKKETLAVADAKLGN------AIKE--KLSINCVH--- 106 (498)
T ss_pred HHHHHHHHHHhhhhHHH-HHHHHHHHHcCCcchhHHHHHHhhccCCeeeeccHHHhH------HHHH--hhcceeec---
Confidence 47889999999998876 5543 45677888876 6777 69999998
Q ss_pred ccccchhhhhHhHHHHHHHHHHhhchhh----------hh--------hhhcCHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 036298 68 SDNNSLNDGYQESHEDLAKYIDALKNEE----------DI--------ARCIDTD--RLIDQLESIENEIVSNHNFIRDS 127 (368)
Q Consensus 68 ~~~~~~~~~~~~~r~~~~~~i~~~~~~~----------~~--------~~~id~~--~~i~lld~IdkeIn~~~~rvrew 127 (368)
+.++++++||+|+|+..||+++...+ ++ +.+|||| |+|.|||++|+|+|+|.||||||
T Consensus 107 --~~~v~el~RgiRs~l~el~~g~~~~dl~~msLglaHslar~Klkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEw 184 (498)
T KOG2572|consen 107 --DSAVMELLRGIRSQLTELISGLNDSDLAAMSLGLAHSLARYKLKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEW 184 (498)
T ss_pred --chhHHHHHHHHHHHHHHHhccCChhhhhHHHHHHHHHHHhhhcccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77999999999999999999998766 22 2379999 99999999999999999999999
Q ss_pred hhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccccccCcchhhhccCCccchhhhhhhhcccccccCCCCCCH
Q 036298 128 YRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPE 207 (368)
Q Consensus 128 Y~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L~~iL~~~~~~~~v~v~~~aA~~S~G~~Lse 207 (368)
||||||||.+||.||+.|+++|+.+|+| .+....| |+++|| ++.+..+ .++|..|||+++++
T Consensus 185 YGwHFPEL~kii~dn~~Yak~vk~mG~r-------~~~a~~d-------~sEil~-eeiE~~~---k~aAeiSMgteis~ 246 (498)
T KOG2572|consen 185 YGWHFPELAKIIQDNYAYAKLVKAMGVR-------CNAASLD-------FSEILP-EEIEAEL---KEAAEISMGTEISD 246 (498)
T ss_pred HhhhhHHHHHHHHhhHHHHHHHHHHhHh-------hhhhccc-------HHhhch-HHHHHHH---HhhhhhhhcccccH
Confidence 9999999999999999999999999999 8999888 999999 7788777 45999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCC-
Q 036298 208 DVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDN- 286 (368)
Q Consensus 208 ~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf- 286 (368)
.|+.+|..+|++|+++.+||.+|.+||++||..||||||+|||+. ||||||+|||||.||||+|+||||+||||||||
T Consensus 247 ~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGEl-VGaRlIshaGSL~nLaK~p~StIQilGAEKALFr 325 (498)
T KOG2572|consen 247 SDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGEL-VGARLISHAGSLFNLAKAPASTIQILGAEKALFR 325 (498)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHhhhhHHHHhhCChhHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred ------CCCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 036298 287 ------ISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPK 356 (368)
Q Consensus 287 ------~tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~~G~~lr~~Ie~ki~kl~epP~ 356 (368)
.|||||+|||+++|+++||+++|||+|.||+|++||+|+|+++++.+|.+|.+.|.++|+||+.+++.-.
T Consensus 326 ALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~klE~rlr~lE~r~l 401 (498)
T KOG2572|consen 326 ALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLEGRDL 401 (498)
T ss_pred HHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhhhccCc
Confidence 3999999999999999999999999999999999999999999999999999999999999999986543
No 2
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-84 Score=638.93 Aligned_cols=328 Identities=23% Similarity=0.294 Sum_probs=295.2
Q ss_pred HHHHHHHHhhhccCCCCCCcH--------------HHHHh-------hhhhcChhhhhhhhhhhhhhcCCCCCceeeccc
Q 036298 8 RSQFEKIVKSTCSSSWKPLPE--------------DVLQK-------TVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRH 66 (368)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-------~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~ 66 (368)
-+.|-+||.++.|-.|++.-. |+|.. -+.+|+.+|+-|...|++-.+...-+|.|.+
T Consensus 38 ~~kf~~vv~l~sf~pFk~a~~ALen~n~iSeG~~~edLr~fLe~nlpK~kkkk~sLgi~d~kLg~~i~E~~~~i~c~~-- 115 (498)
T KOG2573|consen 38 LSKFTQVVQLASFAPFKGAADALENANAISEGVVHEDLRSFLELNLPKVKKKKVSLGIGDSKLGISIKEAFPKIPCQS-- 115 (498)
T ss_pred HHHHHhHhhhhccCCcccHHHHHHhccccccccccHHHHHHHHhhChhhhcCceeeccCcchhhhHHHhhccCccccc--
Confidence 356999999999999987543 22321 2378999999999999999888777899988
Q ss_pred cccccchhhhhHhHHHHHHHHHHhhchhh----------hhhh--------hcCHH--HHHHHHHHHHHHHHHHHHHHHH
Q 036298 67 ESDNNSLNDGYQESHEDLAKYIDALKNEE----------DIAR--------CIDTD--RLIDQLESIENEIVSNHNFIRD 126 (368)
Q Consensus 67 ~~~~~~~~~~~~~~r~~~~~~i~~~~~~~----------~~~~--------~id~~--~~i~lld~IdkeIn~~~~rvre 126 (368)
+..+.+++||+|.||.+|+.++...+ +.+| .+|.| |+|.+||++|||||+|+|||||
T Consensus 116 ---~~~~~ellRGvR~hf~kl~K~L~~~d~~kaqLGLghsYSRaKVkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirE 192 (498)
T KOG2573|consen 116 ---NEVVQELLRGVRKHFDKLMKGLDPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIRE 192 (498)
T ss_pred ---chhHHHHHHHHHHHHHHHHccCCCccHHHHHhcccchhhhhheeecccccchHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 88999999999999999999998655 1122 35777 9999999999999999999999
Q ss_pred HhhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccccccCcchhhhccCCccchhhhhhhhcccccccCCCCCC
Q 036298 127 SYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLP 206 (368)
Q Consensus 127 wY~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L~~iL~~~~~~~~v~v~~~aA~~S~G~~Ls 206 (368)
|||||||||.+||+||+.|+++|++|+++ ..++... +++.+..+-.|.+....| ++++..|||++||
T Consensus 193 wYswhFPEL~kiv~DNy~ya~~~~~i~dk-------~~l~ed~---~~~~~e~l~~d~~ka~~I---iea~k~SMG~diS 259 (498)
T KOG2573|consen 193 WYSWHFPELVKIVPDNYKYAKVVKFIVDK-------EKLNEDG---LHELLEDLGVDSEKAQEI---IEAAKNSMGQDIS 259 (498)
T ss_pred HHhhccHHHHHhccchHHHHHHHHHHhch-------hhccccc---hhHHHHHhcCcHHHHHHH---HHHHhhccCCCCC
Confidence 99999999999999999999999999999 7776544 666454444356666665 6799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCC
Q 036298 207 EDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDN 286 (368)
Q Consensus 207 e~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf 286 (368)
+.||.||..|+++|.+|.+||++|.+||..+|+.|||||++|+|+. ||||||+|||||+||||+||||+||||||||||
T Consensus 260 ~~Dl~Ni~~fa~rV~~l~eyRk~L~~YL~~KMs~vAPnLa~LIGe~-vgARLIShAGsLtNLaK~PASTvQIlGAEKALF 338 (498)
T KOG2573|consen 260 PADLENIRKFAERVSDLAEYRKQLSDYLKDKMSSVAPNLAALIGEV-VGARLISHAGSLTNLAKYPASTVQILGAEKALF 338 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH-HHHHHHHhccccchhhhCcchHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred -------CCCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCchhHHHHHHHHHHHHHhcCC
Q 036298 287 -------ISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRP 354 (368)
Q Consensus 287 -------~tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~~G~~lr~~Ie~ki~kl~ep 354 (368)
+|||||+||||++|++|..++||+|+|+||+||+||+|||||++.+++.||..+|++||+||+.+...
T Consensus 339 RALKtrgnTPKYGLIyhSsfigrA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe~Lr~qVEeRL~fy~tg 413 (498)
T KOG2573|consen 339 RALKTRGNTPKYGLIYHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGEKLREQVEERLEFYETG 413 (498)
T ss_pred HHHHhcCCCCCceeEeecchhhhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHHHHHHHHHHHHHhhhcC
Confidence 49999999999999999999999999999999999999999999999999999999999999999843
No 3
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-78 Score=600.25 Aligned_cols=266 Identities=28% Similarity=0.355 Sum_probs=233.1
Q ss_pred ccchhhhhHhHHHHHHHHHHhhchhhh-----------hhh--------hcCHH--HHHHHHHHHHHHHHHHHHHHHHHh
Q 036298 70 NNSLNDGYQESHEDLAKYIDALKNEED-----------IAR--------CIDTD--RLIDQLESIENEIVSNHNFIRDSY 128 (368)
Q Consensus 70 ~~~~~~~~~~~r~~~~~~i~~~~~~~~-----------~~~--------~id~~--~~i~lld~IdkeIn~~~~rvrewY 128 (368)
+....+..++.+.++..+.... +++ +.+ +.|.+ |+|+++|+||++||.+|||+||||
T Consensus 66 ~~~~~~~r~~~~~~~~~l~~~~--~~d~~~~~~~~~~~~sr~kv~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY 143 (395)
T COG1498 66 SEVGEDLRENAEEALGELSSSD--EDDYYRMLLGLGHELSRIKVREEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWY 143 (395)
T ss_pred cHHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677776666553222 221 111 33555 999999999999999999999999
Q ss_pred hcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccccccCcchhhhccCCccchhhhhhhhcccccccCCCCCCHH
Q 036298 129 RSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPED 208 (368)
Q Consensus 129 ~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L~~iL~~~~~~~~v~v~~~aA~~S~G~~Lse~ 208 (368)
|||||||++||+||.+|+++|..+|++ .+++... +.+ |...+|+ ..+.| .++|.+|||.++++.
T Consensus 144 ~~hFPEL~~lv~~~~~Y~~~V~~~g~~-------~~~~~~~---~~~-l~~~~~~--~~~~i---~~aA~~SmG~~~~~~ 207 (395)
T COG1498 144 GWHFPELSSLVPDNEQYAKLVSALGNR-------ENINKES---LKD-LGFALPD--IAIKI---AEAAKDSMGADLSEE 207 (395)
T ss_pred hhcCcchhhhcccHHHHHHHHHHHcch-------hccchhh---HHH-Hhhhcch--HHHHH---HHHhhcccccCCChh
Confidence 999999999999999999999999999 7777664 111 5555662 34444 558999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCC--
Q 036298 209 VLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDN-- 286 (368)
Q Consensus 209 dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf-- 286 (368)
|+.+|..+|+.+.+|+++|++|.+||+++|+.||||||+|||+. +|||||+|||||.+||||||||||+||||||||
T Consensus 208 Di~~i~~~ae~i~~L~~~R~~l~~Yi~~~M~~vAPNlt~LVG~~-lgARLIs~AGgL~~LAk~PASTIQvLGAEKALFra 286 (395)
T COG1498 208 DIDNIRELAEIILELYELREQLEEYIESKMSEIAPNLTALVGPV-LGARLISHAGGLTRLAKMPASTIQVLGAEKALFRA 286 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHhHH-HHHHHHHHhcCHHHHHhCccchhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred -----CCCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 036298 287 -----ISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKT 357 (368)
Q Consensus 287 -----~tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~~G~~lr~~Ie~ki~kl~epP~~ 357 (368)
+|||||+|||||+|+++|+|+||||||+||+|||||||||+|++++++ ..||++|++|++++.++|+.
T Consensus 287 L~~~~~~PK~GvIy~~p~I~~sp~~~rGkiAR~LAaK~AIAARiD~~s~~~~~---~~lr~ele~Ri~~i~~~~~~ 359 (395)
T COG1498 287 LKTGAKTPKYGVIYQSPLIQKSPPWQRGKIARALAAKLAIAARIDAFSGEPDG---ISLREELEKRIEKLKEKPPK 359 (395)
T ss_pred HhCCCCCCCceeEeeChhhccCCHHHhhHHHHHHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHhccCCC
Confidence 499999999999999999999999999999999999999999999887 89999999999999977533
No 4
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=7.8e-77 Score=599.20 Aligned_cols=294 Identities=26% Similarity=0.286 Sum_probs=263.1
Q ss_pred hhhhhcChhhhhhhhhhhhhhcCCCCCceeeccccccccchhhhhHhHHHHHHHHHHhh--c-hhhhh------------
Q 036298 33 KTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDAL--K-NEEDI------------ 97 (368)
Q Consensus 33 ~~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~--~-~~~~~------------ 97 (368)
.++.++|++|...++. +.+.|+. ....+++|++|.++.+++.++ . .+.+.
T Consensus 62 ~~l~v~d~~l~~~l~~---------~~~~~~~------~~~~~~~r~iR~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~s 126 (414)
T PRK14552 62 DEVVVENEEESRKLQE---------LGYRVTV------EPPNKIGEFLRENLPELGVEYGFFEDEEEFYEKLHEWSVELT 126 (414)
T ss_pred ceEEEecHHHHHHHHH---------cCCeeEe------ccHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHhHHHH
Confidence 3466788888875443 4466654 255889999999999999764 2 12211
Q ss_pred -------hhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccc
Q 036298 98 -------ARCIDTD--RLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSA 168 (368)
Q Consensus 98 -------~~~id~~--~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~ 168 (368)
.++.|++ |+|.++|+||+|||.|||||||||+||||||+++++||.+|+++|+.++++ .+++..
T Consensus 127 r~klk~~~~~~D~~iiqai~~ld~ldk~in~~~~RLrewY~~~FPEL~~iv~d~~~Y~~iV~~i~~~-------~~i~~~ 199 (414)
T PRK14552 127 RRKLRSAAQKRDKLAIQAIRAIDDIDKTINLFSERLREWYSLHFPELDELVKKHEEYVKLVSELGDR-------ENYTRE 199 (414)
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHhhcCChHHHHHHHHHcCCh-------hhhhhh
Confidence 1256887 999999999999999999999999999999999999999999999999999 888765
Q ss_pred cccCcchhhhcc-CCccchhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhh
Q 036298 169 EYFSLPCRLKED-LSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCE 247 (368)
Q Consensus 169 d~~~L~~~L~~i-L~~~~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLta 247 (368)
+ |.++ ++ +++++.|.+ +|++|||.++++.|+.+|..+|++|++|+++|++|.+||+++|..+|||||+
T Consensus 200 ~-------l~~i~l~-~eka~~I~~---aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~iAPNLta 268 (414)
T PRK14552 200 K-------LKKLGLP-ENKARKIAE---AAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLETVMKEVAPNLTA 268 (414)
T ss_pred H-------HHhccCC-HHHHHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 5 8887 88 888998866 9999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCC-------CCCCcceeeeccccccCChhhhhhHHHHhhhhHH
Q 036298 248 VVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDN-------ISFYEGYLESTEMFQATTLCMRERARQLLAEKLK 320 (368)
Q Consensus 248 LvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf-------~tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~a 320 (368)
|||+. +|||||++||||.+||+|||||||+|||||++| .||||||||||++|+++|+|+||||+|+||+|||
T Consensus 269 LVG~~-lAArLIa~AGsL~~Lak~PastIqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgkiaR~lA~K~a 347 (414)
T PRK14552 269 LVGPS-LGARLISLAGGLEELAKMPASTIQVLGAEKALFRHLRTGAKPPKHGVIFQYPAIHGSPWWQRGKIARALAAKLA 347 (414)
T ss_pred HHhhH-HHHHHHHHhCCHHHHhhCCchHHHHhchhhHHHHHhccCCCCCCceEEEcCHHHhhCCHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999998 3999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCchhHHHHHHHHHHHH----HhcCCCCCcccccc
Q 036298 321 EAASVDLKRGDVSGSAGRALRDEILGTIE----YEIRPPKTKFQLRR 363 (368)
Q Consensus 321 LAARiD~~~~~~~g~~G~~lr~~Ie~ki~----kl~epP~~k~~k~~ 363 (368)
||||||+|++. .+|.++|++|++||+ +|++|||.|+.+++
T Consensus 348 lAARiD~~~~~---~~G~~l~~~l~~ri~~i~~k~~~Pp~~k~~~~~ 391 (414)
T PRK14552 348 IAARVDYFSGR---YIGDELKEELNKRIEEIKEKYPKPPKKKREEKK 391 (414)
T ss_pred HHHHhhhcCCc---cchHHHHHHHHHHHHHHHHhcCCCCCCCcCCCC
Confidence 99999999863 799999999999999 56999999876543
No 5
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=100.00 E-value=1.9e-70 Score=543.65 Aligned_cols=274 Identities=31% Similarity=0.507 Sum_probs=250.4
Q ss_pred chhhhhHhHHHHHHHHHHhhchhhhhhhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHH
Q 036298 72 SLNDGYQESHEDLAKYIDALKNEEDIARCIDTD-------RLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLH 144 (368)
Q Consensus 72 ~~~~~~~~~r~~~~~~i~~~~~~~~~~~~id~~-------~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~ 144 (368)
.-...|+.|.++.+.|+........+-..+..| ..+.++.+||+||+.+|+|+|+||+.+||||+++|++|++
T Consensus 59 ~~S~r~~~im~q~E~~l~k~~d~~~i~~~~E~dpeykLIVd~n~iavdI~nEI~ivH~FikdkY~~RFpELeSLVp~~ld 138 (492)
T KOG2574|consen 59 AKSSRYRDIMQQTEEYLGKQVDAKEILGPVEADPEYKLIVDCNQIAVDIENEIVIVHNFIKDKYSKRFPELESLVPNPLD 138 (492)
T ss_pred HhccHHHHHHHHHHHHhcccchHHHhcCccccCcceeeeechhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHhhccCHHH
Confidence 344578999999999987766543333333211 3466689999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcccccccccccccCcchhhhccCCccchhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHH
Q 036298 145 YALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALD 224 (368)
Q Consensus 145 Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L~~iL~~~~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~vi~L~ 224 (368)
|+++|+.+||+ .|...++ +.+..+|| .+++|+|+| +|++|.|..++++++++|.++|+++.+|+
T Consensus 139 Y~~~Vk~LgNe-------lD~~~~~-----l~~~~~L~-~atIMVvsv---TasTT~G~~Lp~d~~~~v~eAc~~a~~L~ 202 (492)
T KOG2574|consen 139 YAKVVKELGNE-------LDLKKVD-----LELQAILP-SATIMVVSV---TASTTQGNKLPEDELEQVLEACEMAEQLN 202 (492)
T ss_pred HHHHHHHHhhh-------HHHHHhh-----hhhhccCc-cceEEEEEE---EeeeccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 7777766 22555999 999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCC-------CCCCcceeeec
Q 036298 225 SEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDN-------ISFYEGYLEST 297 (368)
Q Consensus 225 ~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf-------~tpk~GlIy~s 297 (368)
..|..|.+||++||..||||||++||+. +||+||++||||.+|++|||||||+||+.|.++ ..|+|||||+|
T Consensus 203 ~~k~ki~eyVeSrms~IAPNLs~ivGs~-taA~Lig~AGGls~Lsk~PaCNv~vlGk~kk~l~gfst~~~~~~~Gyly~s 281 (492)
T KOG2574|consen 203 KLKEKIYEYVESRMSFIAPNLSAIVGST-TAAKLIGIAGGLSELSKMPACNVQVLGKQKKTLIGFSTTSSLPHTGYLYAS 281 (492)
T ss_pred HHHHHHHHHHHHHhhhccchhHhhhcHH-HHHHHHHhhcCchhhccCCcchhhhhhccchhccccccccccCccceeeHH
Confidence 9999999999999999999999999999 999999999999999999999999999999995 28999999999
Q ss_pred cccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCchhHHHHHHHHHHHHHhcCCCCCccccc
Q 036298 298 EMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTKFQLR 362 (368)
Q Consensus 298 ~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~~G~~lr~~Ie~ki~kl~epP~~k~~k~ 362 (368)
++||+.||++|+|++||+|||++||||||+++++++|.+|.+||++|++|++||+||||.|.+|.
T Consensus 282 ~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~evekK~eKl~EpPpvk~~Ka 346 (492)
T KOG2574|consen 282 DIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVEKKIEKLQEPPPVKQTKA 346 (492)
T ss_pred hHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998873
No 6
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=2.9e-53 Score=376.78 Aligned_cols=142 Identities=38% Similarity=0.543 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCC-----
Q 036298 212 MTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDN----- 286 (368)
Q Consensus 212 ~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf----- 286 (368)
||.++|+++++|+++|+.|.+||++||..||||||+|||+. ||||||++||||.+||+|||||||+|||||++|
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~-vaA~Li~~aGgL~~Lak~Pasniq~lGaeK~~~~~l~~ 79 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSS-VAARLISHAGGLENLAKMPASNIQVLGAEKALFRGLKT 79 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH-HHHHHHHHHTSHHHHHTS-HHHHTTSTCHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcH-HHHHHHHHcccHHHHHhCCHhhHHHHHhHHHHhHHhcc
Confidence 68999999999999999999999999999999999999999 999999999999999999999999999999998
Q ss_pred --CCCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCc-hhHHHHHHHHHHHHHhcCC
Q 036298 287 --ISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGS-AGRALRDEILGTIEYEIRP 354 (368)
Q Consensus 287 --~tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~-~G~~lr~~Ie~ki~kl~ep 354 (368)
.+|||||||||++|+++|+++||||+|+||+||+||||||+|+++++++ ||.+||++|++||++|+|.
T Consensus 80 ~~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~re~i~~ki~k~~e~ 150 (150)
T PF01798_consen 80 KAKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLREEIEKKIEKLQEK 150 (150)
T ss_dssp T-SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999999999999999999999999999995 9999999999999999984
No 7
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.84 E-value=2.3e-21 Score=144.75 Aligned_cols=51 Identities=33% Similarity=0.522 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhc
Q 036298 104 DRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAIST 154 (368)
Q Consensus 104 ~~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign 154 (368)
.|+++++++||+|||.+|||+|||||||||||+++++||.+|+++|+.|||
T Consensus 3 i~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 3 IQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 488999999999999999999999999999999999999999999999997
No 8
>PF14918 MTBP_N: MDM2-binding
Probab=83.50 E-value=1.8 Score=42.25 Aligned_cols=103 Identities=25% Similarity=0.382 Sum_probs=55.4
Q ss_pred hccCCCCCCc--------HHHHHhhhhhcChhhhhhhhhhhhhhcCCCCCceeeccccccccchhhhhHhHHHHHHHHHH
Q 036298 18 TCSSSWKPLP--------EDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYID 89 (368)
Q Consensus 18 ~~~~~~~~~~--------~~~~~~~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~ 89 (368)
-|||.|+++- ||.+|..+-.|= ++++.....|-+-.+ ..++-++|.++-+-+-.|-+
T Consensus 87 fCSSDWeei~~~~qk~~~Ee~lqt~ieecl----------sa~~~~eeeD~nsrE-----slSla~l~ee~Ae~LHqLsD 151 (271)
T PF14918_consen 87 FCSSDWEEIHFDSQKDDIEESLQTNIEECL----------SALQCFEEEDSNSRE-----SLSLAELYEEAAENLHQLSD 151 (271)
T ss_pred hhhccHhhhCchhhhcchhhhhhhhHHHHH----------HHhcccccccccccc-----CccHHHHHHHHHHHHHHHhh
Confidence 4999999987 888888877662 233331111211111 33677888888776666655
Q ss_pred hhchhh-hhhh----hc--CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHH
Q 036298 90 ALKNEE-DIAR----CI--DTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLH 144 (368)
Q Consensus 90 ~~~~~~-~~~~----~i--d~~~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~ 144 (368)
++-.+. .+-. +. |+..+-+.|.-| ---+++||||+-|- .|++++.+
T Consensus 152 kLP~pgramldVil~~s~~d~pklkDcLp~i-----GALKhl~eWhsAki----ti~t~~~~ 204 (271)
T PF14918_consen 152 KLPAPGRAMLDVILLPSEEDSPKLKDCLPLI-----GALKHLREWHSAKI----TIATSHCE 204 (271)
T ss_pred cCCCCCceeEEEEEecCCCCCccHHHHHHHH-----HHHHHHHHhhhceE----EEeccccc
Confidence 555443 0000 01 121111111111 12378999999874 46666654
No 9
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=51.79 E-value=11 Score=29.44 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=24.2
Q ss_pred HHHHHHHhhhccCCCCCCcHHHHHhhhhhcC
Q 036298 9 SQFEKIVKSTCSSSWKPLPEDVLQKTVDSCD 39 (368)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 39 (368)
..|.|+||+++|+.|+.+.+ +|+.+...++
T Consensus 37 ~~f~k~vkL~aF~pF~s~~~-ALe~~~aise 66 (67)
T PF08156_consen 37 EKFSKIVKLKAFSPFKSAEE-ALENANAISE 66 (67)
T ss_pred HHHhhhhhhhhccCCCCHHH-HHHHHHHhhc
Confidence 56999999999999998765 8887765443
No 10
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=50.47 E-value=17 Score=36.76 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhC
Q 036298 204 PLPEDVLQMTMDACDRVIA-LDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAG 263 (368)
Q Consensus 204 ~Lse~dl~~I~~~~~~vi~-L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AG 263 (368)
+.+++|++.+...-+.++. ..-....+.+|+...-..+|| .||+||-. +|...|-.-+
T Consensus 246 ~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~P-v~AvVGGi-vaQevIk~is 304 (331)
T KOG2014|consen 246 ETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAP-VCAVVGGI-LAQEVIKAIS 304 (331)
T ss_pred cccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCc-hhhhhhhH-hHHHHHHHhh
Confidence 6779999999888777776 666667777899999999999 99999999 9988876544
No 11
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=31.43 E-value=1.7e+02 Score=30.06 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=59.0
Q ss_pred CcHHHHHhhhhhcChhhhhhhhhhhhhhcCCCCCceeeccccccccchhhhhHhH--HHHHHHHHHhhchhh--------
Q 036298 26 LPEDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQES--HEDLAKYIDALKNEE-------- 95 (368)
Q Consensus 26 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~i~~~~~~~-------- 95 (368)
...|++.--+..||.+|+.+.-.|-..+.+++ .|. +..+.+...|. .+.+..|+.-....+
T Consensus 208 ~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk-~It--------~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~ 278 (346)
T KOG0989|consen 208 IDDDALKLIAKISDGDLRRAITTLQSLSLLGK-RIT--------TSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRV 278 (346)
T ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHHhhccCc-ccc--------hHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHH
Confidence 34456667788899999998887777776432 222 12333333322 222333332111111
Q ss_pred --hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Q 036298 96 --DIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLEC 137 (368)
Q Consensus 96 --~~~~~id~~~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~s 137 (368)
-+....++.|++..+.+.=.++-.++...++-|+|+|-+.++
T Consensus 279 Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~ 322 (346)
T KOG0989|consen 279 REIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDK 322 (346)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccc
Confidence 112256777777776555444447778888888888888765
No 12
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=29.56 E-value=25 Score=31.72 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhcc
Q 036298 117 IVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTA 155 (368)
Q Consensus 117 In~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign~ 155 (368)
.+..|.|+++||+..-|+++.| ++|..|=+-+.-|-|.
T Consensus 46 ~~~~~~rl~~ly~kil~~~eqI-pkn~ayRk~Tesit~~ 83 (145)
T KOG3365|consen 46 CENPHERLRDLYTKILDVLEQI-PKNAAYRKYTESITNQ 83 (145)
T ss_pred cCCHHHHHHHHHHHhHHHHHHc-chhhhhhHHHHHHHHH
Confidence 4678999999999999999976 9999999988877776
No 13
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=29.15 E-value=5.3e+02 Score=25.04 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhhccCCCCCCcHHHHHhhhhhcChhhhhhhhhhhhhhcCCCCCceeeccccccccchhhhhHh-HHHHHH
Q 036298 7 ERSQFEKIVKSTCSSSWKPLPEDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQE-SHEDLA 85 (368)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~ 85 (368)
...+..++++..|...=.+.++++++.-+..++.+++.....+....-...-. ++. ..+.+.+.. .+..+.
T Consensus 177 ~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~---it~-----~~v~~~~~~~~~~~i~ 248 (355)
T TIGR02397 177 PLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGN---ITY-----EDVNELLGLVDDEKLI 248 (355)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCC---CCH-----HHHHHHhCCCCHHHHH
Confidence 34555666666555443456777888777777777776655554332211101 110 011111110 112233
Q ss_pred HHHHhhchhhhhhhhcCHHHHHHHHHHHHH-------HHHHHHHHHHHHhhcccC
Q 036298 86 KYIDALKNEEDIARCIDTDRLIDQLESIEN-------EIVSNHNFIRDSYRSKFG 133 (368)
Q Consensus 86 ~~i~~~~~~~~~~~~id~~~~i~lld~Idk-------eIn~~~~rvrewY~~hFP 133 (368)
.++..+.. =|..+++.+++++.+ =+..+..++|+++.++..
T Consensus 249 ~l~~ai~~-------~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~ 296 (355)
T TIGR02397 249 ELLEAILN-------KDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKT 296 (355)
T ss_pred HHHHHHHc-------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 33333321 144555555655544 377788899999988874
No 14
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=26.69 E-value=1.3e+02 Score=27.70 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.8
Q ss_pred hhcChhhhhhhhhhhhh
Q 036298 36 DSCDPRLMAGADVLSTL 52 (368)
Q Consensus 36 ~~~d~~l~~~~~~~~~~ 52 (368)
++|||+..++++.|..-
T Consensus 7 L~CDp~v~eal~~L~~~ 23 (160)
T PF15005_consen 7 LQCDPSVVEALKSLRHD 23 (160)
T ss_pred eeCCHHHHHHHHHHHHH
Confidence 68999999999888765
No 15
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=25.59 E-value=39 Score=26.86 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=14.1
Q ss_pred HHHHHHhhcccCccccc
Q 036298 122 NFIRDSYRSKFGDLECL 138 (368)
Q Consensus 122 ~rvrewY~~hFPEL~si 138 (368)
..||+.|+-.||||-+-
T Consensus 26 e~V~dfYs~~YPeLttA 42 (66)
T TIGR03738 26 EQVRDFYSAQYPELLNA 42 (66)
T ss_pred HHHHHHHhccCchheee
Confidence 35799999999999753
No 16
>PF00601 Flu_NS2: Influenza non-structural protein (NS2); InterPro: IPR000968 The Influenza A virus belongs to the class of ssRNA negative-strand viruses. Nonstructural protein 2 (NS2) may play a role in promoting normal replication of the genomic RNAs by preventing the replication of short-length RNA species []. NS1 and NS2 proteins are produced from the same gene by alternative splicing.; GO: 0006405 RNA export from nucleus, 0042025 host cell nucleus; PDB: 1PD3_B.
Probab=24.81 E-value=1e+02 Score=26.01 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=30.3
Q ss_pred chhhhhHhHHHHHHHHHHhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 036298 72 SLNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSNHNF 123 (368)
Q Consensus 72 ~~~~~~~~~r~~~~~~i~~~~~~~~~~~~id~~~~i~lld~IdkeIn~~~~r 123 (368)
.+...|..||--++..=+.++..++.-..|.-|||..++-+++.||..|+-.
T Consensus 41 qL~qkfe~IrwlI~e~r~~l~~tensf~qItfmqaLqlLlEve~eirtfSfQ 92 (94)
T PF00601_consen 41 QLGQKFEEIRWLIEEHRHRLKITENSFEQITFMQALQLLLEVEQEIRTFSFQ 92 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHC----TTSHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455666666555544344444333445667789999999999999988643
No 17
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.81 E-value=6e+02 Score=27.94 Aligned_cols=45 Identities=7% Similarity=0.082 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhccCCCCCCcHHHHHhhhhhcChhhhhhhhhhhhh
Q 036298 8 RSQFEKIVKSTCSSSWKPLPEDVLQKTVDSCDPRLMAGADVLSTL 52 (368)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 52 (368)
..+..+.++.-|.....+...++++.-+..||.+++.++..|...
T Consensus 182 ~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl 226 (614)
T PRK14971 182 VADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQV 226 (614)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344445555444444555666677777788888888776666443
No 18
>smart00096 UTG Uteroglobin.
Probab=21.25 E-value=1.1e+02 Score=24.47 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=26.9
Q ss_pred hhhhhHhHHHHHHHHHHhhchhh-------hhhhhcCHH------HHHHHHHHH
Q 036298 73 LNDGYQESHEDLAKYIDALKNEE-------DIARCIDTD------RLIDQLESI 113 (368)
Q Consensus 73 ~~~~~~~~r~~~~~~i~~~~~~~-------~~~~~id~~------~~i~lld~I 113 (368)
+...|-|.-+.|..++..+.... ++.+|+|++ ++.++++.|
T Consensus 10 v~~fl~gt~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~kI 63 (69)
T smart00096 10 IELLLLGTPSSYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEKI 63 (69)
T ss_pred HHHHHcCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44567777777888887776544 456688775 455555554
Done!