Query 036298
Match_columns 368
No_of_seqs 178 out of 643
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icx_A PRE mRNA splicing prote 100.0 1.7E-84 5.8E-89 617.0 18.1 236 100-357 2-247 (255)
2 3pla_A NOP5, PRE mRNA splicing 100.0 1.7E-84 5.8E-89 646.1 16.1 288 33-357 61-380 (388)
3 2ozb_B U4/U6 small nuclear rib 100.0 1.8E-82 6.1E-87 605.5 20.1 232 105-353 22-260 (260)
4 2nnw_A NOP5/NOP56 related prot 100.0 9.4E-80 3.2E-84 611.5 18.4 281 34-352 71-376 (376)
5 1nt2_B Conserved hypothetical 100.0 1.8E-59 6E-64 445.5 10.7 203 69-353 35-257 (258)
6 3gqu_A NOP5P protein; RNA bind 100.0 3.8E-49 1.3E-53 353.1 5.2 133 225-361 17-160 (169)
7 3id6_A NOP5, PRE mRNA splicing 100.0 2.2E-41 7.4E-46 323.8 11.2 178 33-243 61-263 (268)
8 4fbj_A CIF, hypothetical prote 62.1 3.7 0.00013 38.3 2.4 50 259-308 99-165 (261)
9 2a1j_A DNA repair endonuclease 44.0 11 0.00038 27.7 2.0 34 249-283 12-46 (63)
10 3efy_A CIF (cell cycle inhibit 36.3 13 0.00044 33.3 1.5 43 266-308 44-98 (195)
11 4f8c_A Cycle inhibiting factor 29.1 19 0.00066 33.7 1.5 22 287-308 171-192 (275)
12 2a1j_B DNA excision repair pro 25.7 33 0.0011 26.5 2.1 28 249-277 40-67 (91)
13 3eir_A Putative ATP/GTP bindin 25.0 26 0.00088 32.8 1.5 52 266-319 142-205 (281)
14 1kft_A UVRC, excinuclease ABC 24.0 31 0.0011 25.7 1.6 28 249-277 32-59 (78)
15 1z00_A DNA excision repair pro 23.5 29 0.001 26.5 1.4 28 249-277 27-54 (89)
16 1x2i_A HEF helicase/nuclease; 22.6 42 0.0014 24.2 2.0 27 249-276 22-48 (75)
17 1pd3_A Nonstructural protein N 21.6 98 0.0034 22.7 3.7 48 73-120 11-58 (58)
No 1
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.7e-84 Score=616.98 Aligned_cols=236 Identities=24% Similarity=0.277 Sum_probs=214.0
Q ss_pred hcCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccccccCcchhh
Q 036298 100 CIDTD--RLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRL 177 (368)
Q Consensus 100 ~id~~--~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L 177 (368)
++|+| |+|.++|+||+|||.||||||||||||||||+++|+||++|+++|+.+||+ .|++..+ |
T Consensus 2 k~D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig~~-------~~~~~~~-------l 67 (255)
T 3icx_A 2 KRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDR-------GFLTIDS-------L 67 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTCSG-------GGCCHHH-------H
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHcCC-------CCCChhh-------H
Confidence 35666 999999999999999999999999999999999999999999999999999 9998877 8
Q ss_pred hcc-CCccchhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHH
Q 036298 178 KED-LSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAA 256 (368)
Q Consensus 178 ~~i-L~~~~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaA 256 (368)
+++ ++ ++++++|++ +|++|||++||++|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+. |||
T Consensus 68 ~~l~l~-~~~~~~i~~---aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~-vaA 142 (255)
T 3icx_A 68 KELGFN-EQRINRILD---AAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPA-LGA 142 (255)
T ss_dssp HTTTCC-HHHHHHHHH---HHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHH-HHH
T ss_pred HHccCC-HHHHHHHHH---HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccH-HHH
Confidence 888 77 889998877 999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHhCchhhhhcCCchhhhhhcccccCCC-------CCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccC
Q 036298 257 KLMAAAGALTNLANMPASEIEVLGRQKSDNI-------SFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKR 329 (368)
Q Consensus 257 rLIs~AGsL~~LAk~PAstIQiLGAeKalf~-------tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~ 329 (368)
|||++||||.+||||||||||+|||||++|. ||||||||||++|+++|+++||||+|+||+||+||||||+|+
T Consensus 143 rLIs~AGgL~~LAk~PAstIqiLGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~~~rgkiaR~LAaK~aLAARiD~~~ 222 (255)
T 3icx_A 143 RLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFS 222 (255)
T ss_dssp HHHHHHSSHHHHTTSCHHHHTTCC-------------------GGGGSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999983 999999999999999999999999999999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 036298 330 GDVSGSAGRALRDEILGTIEYEIRPPKT 357 (368)
Q Consensus 330 ~~~~g~~G~~lr~~Ie~ki~kl~epP~~ 357 (368)
++ .+|.+||++|++||++|++|...
T Consensus 223 g~---~~G~~lre~ie~ri~kl~e~~~~ 247 (255)
T 3icx_A 223 GR---FIGDQLNEQLKKRIDEIKEKFAQ 247 (255)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHTTC--
T ss_pred Cc---ccCHHHHHHHHHHHHHHhCcccc
Confidence 64 57999999999999999999753
No 2
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=100.00 E-value=1.7e-84 Score=646.09 Aligned_cols=288 Identities=22% Similarity=0.245 Sum_probs=255.3
Q ss_pred hhhhhcChhhhhhhhhhhhhhcCCCCCceeeccccccccchhhhhHhHHHHHHHHHHhh--c--hhh----------hhh
Q 036298 33 KTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDAL--K--NEE----------DIA 98 (368)
Q Consensus 33 ~~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~--~--~~~----------~~~ 98 (368)
+++.++|++|+. +|.++ .++|... .....++++|.++.+++.++ . .++ +++
T Consensus 61 ~~l~V~d~~L~~------~i~~~---~~~~~~~------~~~~~~~~iR~~~~~~~~~~g~~~~~~d~~~~~~~l~~~~s 125 (388)
T 3pla_A 61 QEVVVENEAEVP------KLQAL---GYRVSYE------PYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYT 125 (388)
T ss_dssp SEEEESCTTTHH------HHHHT---TCEEEEC------TTCHHHHHHHHTTTTHHHHTTSSSSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECHHHHH------HHHHc---CCCeeec------CchHHHHHHHHhHHHHhHhcCCCCChHHHHHHHHHHHHHHH
Confidence 356789999997 44443 4555431 12345677888888888743 3 222 111
Q ss_pred --------hhcCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccc
Q 036298 99 --------RCIDTD--RLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSA 168 (368)
Q Consensus 99 --------~~id~~--~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~ 168 (368)
.+.|+| |+|.++|+||+|||.||||||||||||||||++||+||.+|+++|+.|||+ .|++..
T Consensus 126 r~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~hFPEL~~iV~d~~~Yak~V~~ignr-------~~~~~~ 198 (388)
T 3pla_A 126 RRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDR-------GFLTID 198 (388)
T ss_dssp HHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGTTTCCCHHHHHHHHHHTCSG-------GGCCHH
T ss_pred HHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcCCHHHHHHHHHHhcCc-------ccCChh
Confidence 256887 999999999999999999999999999999999999999999999999999 999887
Q ss_pred cccCcchhhhcc-CCccchhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhh
Q 036298 169 EYFSLPCRLKED-LSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCE 247 (368)
Q Consensus 169 d~~~L~~~L~~i-L~~~~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLta 247 (368)
+ |+++ +| ++++++|++ +|++|||++||++|+.+|..+|+++++|+++|++|.+||++||..||||||+
T Consensus 199 ~-------l~~l~l~-~~~~~~I~~---aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsa 267 (388)
T 3pla_A 199 S-------LKELGFN-EQRINRILD---AAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTA 267 (388)
T ss_dssp H-------HHTTTCC-HHHHHHHHH---HHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred h-------HhhcCCC-HHHHHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHH
Confidence 7 8888 77 889998877 9999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCC-------CCCCcceeeeccccccCChhhhhhHHHHhhhhHH
Q 036298 248 VVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDN-------ISFYEGYLESTEMFQATTLCMRERARQLLAEKLK 320 (368)
Q Consensus 248 LvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf-------~tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~a 320 (368)
|||+. ||||||+|||||.+||||||||||+|||||++| .||||||||||++|+++|+|+||||+|+||+||+
T Consensus 268 LvG~~-vaArLIs~AGgL~~LAK~PAstIQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~~ap~~~rgKiaR~LAaK~a 346 (388)
T 3pla_A 268 LVGPA-LGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLA 346 (388)
T ss_dssp HHHHH-HHHHHHHHHSSHHHHHTSCHHHHTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HhccH-HHHHHHHHcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhhCCHHHhHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999998 3999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 036298 321 EAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKT 357 (368)
Q Consensus 321 LAARiD~~~~~~~g~~G~~lr~~Ie~ki~kl~epP~~ 357 (368)
||||||+|+++ .+|.+||++|++||++|++|...
T Consensus 347 LAARiD~~~g~---~~G~~lreeie~ri~kl~e~~~~ 380 (388)
T 3pla_A 347 IAARVDAFSGR---FIGDQLNEQLKKRIDEIKEKFAQ 380 (388)
T ss_dssp HHHHHHHTCCC---CCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHhhcccCCc---ccCHHHHHHHHHHHHHHhCcccc
Confidence 99999999864 57999999999999999999754
No 3
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=100.00 E-value=1.8e-82 Score=605.48 Aligned_cols=232 Identities=31% Similarity=0.475 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccccccCcchhhhccCCcc
Q 036298 105 RLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDE 184 (368)
Q Consensus 105 ~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L~~iL~~~ 184 (368)
|+|.++|+||+|||.|||||||||+||||||++||+||.+|+++|+.|||+ .|++..+ +.|+++|+ +
T Consensus 22 qa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~-------~~~~~~~-----~~L~~iL~-~ 88 (260)
T 2ozb_B 22 DANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNS-------LDKCKNN-----ENLQQILT-N 88 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTC-------GGGCTTC-----TTGGGTSC-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCc-------hhhccch-----HHHHHHcC-H
Confidence 899999999999999999999999999999999999999999999999999 7765322 23999999 7
Q ss_pred chhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhCc
Q 036298 185 TQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGA 264 (368)
Q Consensus 185 ~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AGs 264 (368)
+++++|++ +|++|||.++|++|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+. +|||||+||||
T Consensus 89 ~~~~~i~~---aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~-vaArLI~~AGs 164 (260)
T 2ozb_B 89 ATIMVVSV---TASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGAS-TAAKIMGVAGG 164 (260)
T ss_dssp HHHHHHHH---HHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH-HHHHHHHHHTS
T ss_pred HHHHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcH-HHHHHHHHhCC
Confidence 89999987 999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhhcCCchhhhhhcccccCC-------CCCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCchh
Q 036298 265 LTNLANMPASEIEVLGRQKSDN-------ISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAG 337 (368)
Q Consensus 265 L~~LAk~PAstIQiLGAeKalf-------~tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~~G 337 (368)
|.+||||||||||+|||||++| .+||||+||||++||++|+++||||+|+||+||+||||||+|+++++|++|
T Consensus 165 L~~Lak~PastiqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~~~~~~~~~~G 244 (260)
T 2ozb_B 165 LTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVG 244 (260)
T ss_dssp HHHHHTSCHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHH
T ss_pred HHHHhhCCcHHHHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 9999999999999999999998 399999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 036298 338 RALRDEILGTIEYEIR 353 (368)
Q Consensus 338 ~~lr~~Ie~ki~kl~e 353 (368)
.++|++|++||++|+|
T Consensus 245 ~~lr~~ie~rl~~~~e 260 (260)
T 2ozb_B 245 YELKDEIERKFDKWQE 260 (260)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999986
No 4
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=100.00 E-value=9.4e-80 Score=611.51 Aligned_cols=281 Identities=22% Similarity=0.258 Sum_probs=239.2
Q ss_pred hhhhcChhhhhhhhhhhhhhcCCCCCceeeccccccccchhhhhHhHHHHHHHHH--------Hhhchhhhh------hh
Q 036298 34 TVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYI--------DALKNEEDI------AR 99 (368)
Q Consensus 34 ~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i--------~~~~~~~~~------~~ 99 (368)
++.++|++|+. +|.+ ++++|...+ +..+.+++ |.++++|+ .++....+- ..
T Consensus 71 ~l~v~d~~l~~------~i~~---~~~~~~~~~---~~~~~~~~---R~~~~~l~~~d~~~~~~~l~h~~sr~Kvk~~~~ 135 (376)
T 2nnw_A 71 EFVFEHPELSR------RAKE---LGFSATTEF---PNIAGERL---RSNPEEFLGENWFEEYYKVGVALTRMRIQEQSG 135 (376)
T ss_dssp CEEESSHHHHH------HHHT---TTCCEEECT---TCHHHHHH---HHCTHHHHCSSHHHHHHHHHHHHHHHHSCCCCS
T ss_pred EEEEcCHHHHH------HHHh---cCCceeeec---CcHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHHhhhccCCC
Confidence 35567777775 4444 345554322 44666666 55555555 222211100 11
Q ss_pred hcCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccccccCcchhh
Q 036298 100 CIDTD--RLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRL 177 (368)
Q Consensus 100 ~id~~--~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L 177 (368)
++|.+ |+|.++|+||+|||.+||||||||+||||||++||+||.+|+++|+.+||+ .+++..+ |
T Consensus 136 k~D~~Iiqai~llddlDkeIn~~~~rlrewY~~~FPEL~~lV~d~~~Y~k~V~~ig~~-------~~l~~~~-------L 201 (376)
T 2nnw_A 136 ARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHR-------DNINEEV-------L 201 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHTCSG-------GGCCSHH-------H
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHhhcCCHHHHHHHHHHhCCc-------cccCHhh-------H
Confidence 35666 999999999999999999999999999999999999999999999999999 8887766 9
Q ss_pred hcc-CCccchhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHH
Q 036298 178 KED-LSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAA 256 (368)
Q Consensus 178 ~~i-L~~~~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaA 256 (368)
+++ |+ ++++++|++ +|++|||.++|++|+++|..+|+++++|+++|++|.+||++||..||||||+|||+. +||
T Consensus 202 ~~i~l~-~~~~~~I~~---aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLvG~~-vaA 276 (376)
T 2nnw_A 202 RELGLS-EEKIKKILE---AKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAK-LAA 276 (376)
T ss_dssp HHTTCC-HHHHHHHHH---HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHH-HHH
T ss_pred HHcCCC-HHHHHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhChH-HHH
Confidence 999 99 889999987 999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHhCchhhhhcCCchhhhhhcccccCCC-------CCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccC
Q 036298 257 KLMAAAGALTNLANMPASEIEVLGRQKSDNI-------SFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKR 329 (368)
Q Consensus 257 rLIs~AGsL~~LAk~PAstIQiLGAeKalf~-------tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~ 329 (368)
|||++||||.+||||||||||+|||||++|. |||||+||||++||++||++||||+|+||+|||||||||+|+
T Consensus 277 rLIs~AGgL~~LAK~PAstIQiLGAeKalf~~lkt~~~tPk~G~Iy~s~~V~~ap~~~kgKiaR~LAaK~aLAARiD~~~ 356 (376)
T 2nnw_A 277 RLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS 356 (376)
T ss_dssp HHHHHHTSHHHHHHSCHHHHHTTTCC-------------CCCCGGGGSHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHhhCChHHHHHhccchhhHHHhccCCCCCCceEEeCCHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999993 999999999999999999999999999999999999999995
Q ss_pred CCCCCch-hHHHHHHHHHHHHHhc
Q 036298 330 GDVSGSA-GRALRDEILGTIEYEI 352 (368)
Q Consensus 330 ~~~~g~~-G~~lr~~Ie~ki~kl~ 352 (368)
+ .+ |.++|++|++||+++.
T Consensus 357 g----~~~G~~lre~ie~rl~~ik 376 (376)
T 2nnw_A 357 G----EYIAEELKKELEARIREIK 376 (376)
T ss_dssp C----CCCHHHHHHHHHHHHHHHC
T ss_pred C----cccCHHHHHHHHHHHHHhC
Confidence 4 45 9999999999999873
No 5
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=100.00 E-value=1.8e-59 Score=445.51 Aligned_cols=203 Identities=24% Similarity=0.284 Sum_probs=173.7
Q ss_pred cccchhhhhHhHHHHHHHHHHhhchhhh---h---hhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCC
Q 036298 69 DNNSLNDGYQESHEDLAKYIDALKNEED---I---ARCIDTD--RLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLP 140 (368)
Q Consensus 69 ~~~~~~~~~~~~r~~~~~~i~~~~~~~~---~---~~~id~~--~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~ 140 (368)
....+..||....++|.+++.++.-.-+ + ..+.|++ |+|.++|+||+|||.|||||||||+|
T Consensus 35 ~~~~~~~g~~~~~~~y~~~l~~~~~~~sr~kvk~~~~~~D~~Iiqai~lld~idkein~~~~rvrewY~~---------- 104 (258)
T 1nt2_B 35 PFNVSEVGAKALGKDYYRILRKTALAVSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAV---------- 104 (258)
T ss_dssp SSCHHHHHHTTSCSTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHTT----------
T ss_pred HHHHHHhheeCCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------
Confidence 3567888888888888888877764221 1 1245666 99999999999999999999999997
Q ss_pred CcHHHHHHHHHHhccCCCcccccccccccccCcchhhhccCCccchhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHH
Q 036298 141 RPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRV 220 (368)
Q Consensus 141 d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L~~iL~~~~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~v 220 (368)
+. + +||+ .+|+++
T Consensus 105 --------------~~------S----------------------------------------~ise-------~~~~~v 117 (258)
T 1nt2_B 105 --------------KE------S----------------------------------------EITE-------KFEKKI 117 (258)
T ss_dssp --------------CC------C----------------------------------------TTHH-------HHHHHH
T ss_pred --------------CC------C----------------------------------------cCCH-------HHHHHH
Confidence 20 1 2222 789999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCC------------CC
Q 036298 221 IALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDN------------IS 288 (368)
Q Consensus 221 i~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf------------~t 288 (368)
++|+++|++|.+||++||..||||||+|||+. ||||||+|||||.+||||||||||+|||||++| .+
T Consensus 118 ~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~-vaArLI~~AGgL~~LAk~PAstIqiLGAeKalf~~l~~~~t~~~~~~ 196 (258)
T 1nt2_B 118 RELRELRRDVEREIEEVMEKIAPNMTELVGAK-VAAKLLERAGSMERLVRLPASKIQVIGAEKSLYKAFARMKKGKKAKI 196 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHH-HHHHHHHHHCSHHHHHTCCHHHHTTSSCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHhCcH-HHHHHHHHhCCHHHHhhCCHHHHHHhccchHHHhhhhccccccCCCC
Confidence 99999999999999999999999999999999 999999999999999999999999999999886 17
Q ss_pred CCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCchhHHHHHHHHHHHHHhcC
Q 036298 289 FYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIR 353 (368)
Q Consensus 289 pk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~~G~~lr~~Ie~ki~kl~e 353 (368)
|||||||||++||++|+++||||+|+||+||+||||||+|+ |.+|.++|++|++||++|+|
T Consensus 197 pk~G~Iy~s~~V~~ap~~~rgK~aR~LAaK~aLAARiD~~~----g~~G~~lre~ie~rl~k~~e 257 (258)
T 1nt2_B 197 PKHGIIFLHPFIRTLPKAKRGKMARFLAAKLAIAAKIDYFR----GEIDESLYESIRRRYEELRR 257 (258)
T ss_dssp --CCGGGGSHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHHT----CSCCTHHHHHHHHHHHHCC-
T ss_pred CCcceEecCHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhC----CcccHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999996 46899999999999999987
No 6
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=100.00 E-value=3.8e-49 Score=353.08 Aligned_cols=133 Identities=31% Similarity=0.377 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCCC-------CCCcceeeec
Q 036298 225 SEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDNI-------SFYEGYLEST 297 (368)
Q Consensus 225 ~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf~-------tpk~GlIy~s 297 (368)
..|..|.+||++||..||||||+|||+. ||||||+|||||.+||||||||||+|||||++|. +|||||||||
T Consensus 17 ~~~~~L~~Yl~srM~~iAPNLsaLvG~~-vaArLI~~AGgL~~LAK~PAsnIqvLGAeKalf~~l~t~~~~pk~G~Iy~s 95 (169)
T 3gqu_A 17 IGAGGLEDYIDKAMDDVAPNLKALVGAK-LGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQY 95 (169)
T ss_dssp ---CCHHHHHHHHHHHHCHHHHHHHCHH-HHHHHHHHHTSHHHHHTCCSHHHHTSCC----------------CCGGGGS
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHhChH-HHHHHHHHhCCHHHHhhCCHHHHHHHhhhhHHHHHHhcCCCCCCCCEEEeC
Confidence 3588999999999999999999999999 9999999999999999999999999999999983 8999999999
Q ss_pred cccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCchhHHHHHHHHHHHHHhc----CCCCCcccc
Q 036298 298 EMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEI----RPPKTKFQL 361 (368)
Q Consensus 298 ~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~~G~~lr~~Ie~ki~kl~----epP~~k~~k 361 (368)
++|+++|+++||||+|+||+||+||||||+|+++ .+|.++|++|++||++|+ +||+.|..+
T Consensus 96 ~lV~~~p~~~rgK~aR~LAaK~aLAARiD~~~g~---~~G~~lreeie~riekl~e~~~~pp~~~~~~ 160 (169)
T 3gqu_A 96 PAINRSPWWQRGKIARALAGKLAIAARVDYFSGE---YIAEELKKELEARIKEIKEKYPRPPKRRKEE 160 (169)
T ss_dssp HHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHTCC---CCCTTHHHHHHHHHHHCCCSCCC--------
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHHHHHhcCCCCCCCccc
Confidence 9999999999999999999999999999999864 579999999999999766 566555443
No 7
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.2e-41 Score=323.76 Aligned_cols=178 Identities=17% Similarity=0.155 Sum_probs=150.1
Q ss_pred hhhhhcChhhhhhhhhhhhhhcCCCCCceeeccccccccchhhhhHhHHHHHHHHHHhh--c--hhh----------hhh
Q 036298 33 KTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDAL--K--NEE----------DIA 98 (368)
Q Consensus 33 ~~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~--~--~~~----------~~~ 98 (368)
+++.++||+|+. +|.++ .++|... .....+|++|.|+.+++.++ . .++ +++
T Consensus 61 ~~l~V~D~kL~~------~i~~~---gi~~~~~------~~~~~~~~iR~~~~~l~~~~G~~~~~~d~~~~~lgl~hs~s 125 (268)
T 3id6_A 61 QEVVVENEAEVP------KLQAL---GYRVSYE------PYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYT 125 (268)
T ss_dssp SEEEESCTTHHH------HHTTT---TCEEEEC------TTCHHHHHHHHTTTHHHHHTTSCSSHHHHHHHHHHHHHHHH
T ss_pred CeEEEeChHHHH------HHHhc---CCCcccC------CcHHHHHHHHHhHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 357799999997 55553 4666531 24567888889999998743 3 222 111
Q ss_pred --------hhcCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccc
Q 036298 99 --------RCIDTD--RLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSA 168 (368)
Q Consensus 99 --------~~id~~--~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~ 168 (368)
.+.|+| |+|.++|+||||||.||||||||||||||||++||+||.+||++|+.+||| .|++..
T Consensus 126 R~Klk~~~~k~D~mIIQai~llDdlDkeiN~~~mRvREWY~~hFPEL~kiV~d~~~Yak~V~~ig~r-------~~l~~~ 198 (268)
T 3id6_A 126 RRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDR-------GFLTID 198 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCCHHHHHHHHHHHCST-------TSCCHH
T ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHhccCHHHHHHHHHHhCCc-------ccCCcc
Confidence 256887 999999999999999999999999999999999999999999999999999 999887
Q ss_pred cccCcchhhhcc-CCccchhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccC
Q 036298 169 EYFSLPCRLKED-LSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAP 243 (368)
Q Consensus 169 d~~~L~~~L~~i-L~~~~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAP 243 (368)
+ |+++ || +++++.|+. +|++|||++||++|+.+|..+|++|++|+++|++|.+||++||..+|-
T Consensus 199 ~-------l~~i~l~-~~~~~~I~~---aA~~SmG~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~~~ 263 (268)
T 3id6_A 199 S-------LKELGFN-EQRINRILD---AAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAH 263 (268)
T ss_dssp H-------HGGGTCC-HHHHHHHHH---HHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred c-------HhhcCCC-HHHHHHHHH---HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 8998 88 889999976 999999999999999999999999999999999999999999999874
No 8
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=62.08 E-value=3.7 Score=38.34 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=35.9
Q ss_pred HHHhCch------hhhhcCCchhhhhhcccccC----C-------CCCCcceeeeccccccCChhhh
Q 036298 259 MAAAGAL------TNLANMPASEIEVLGRQKSD----N-------ISFYEGYLESTEMFQATTLCMR 308 (368)
Q Consensus 259 Is~AGsL------~~LAk~PAstIQiLGAeKal----f-------~tpk~GlIy~s~lV~~ap~~~r 308 (368)
++++|+| +.|+.+|||.=-|+=-+-.- | ..++.||||||+|=+.+-|.+|
T Consensus 99 ~~Qt~~l~~~~faE~l~~L~s~kNyV~~VNDgrLGH~flIDiPa~~~~r~ayiyQSDLG~Galp~lr 165 (261)
T 4fbj_A 99 MAQTGKIDGNEFAESVDQLSSAKNYVALVNDRRLGHMFLIDIPSNDQETVGYIYQSDLGQGALPPLK 165 (261)
T ss_dssp HHHHSCBCHHHHHHHGGGSCTTCEEEEEEEETTTTEEEEEEECCCSSCCEEEEECCBCSCSSSCCBC
T ss_pred hhhhcccchHHHHHHHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCcceEEEecccCCCCCccee
Confidence 5678888 67889999875544322222 2 2589999999999998877654
No 9
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=44.00 E-value=11 Score=27.71 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=28.7
Q ss_pred hccHHHHHHHHHHhCchhhhhcCCchhh-hhhcccc
Q 036298 249 VGSGIIAAKLMAAAGALTNLANMPASEI-EVLGRQK 283 (368)
Q Consensus 249 vG~~~vaArLIs~AGsL~~LAk~PAstI-QiLGAeK 283 (368)
||+. -..+|+.|.||+.++..++--.+ +++|.+.
T Consensus 12 IG~k-r~~~LL~~Fgs~~~i~~As~eeL~~vig~~~ 46 (63)
T 2a1j_A 12 VNAK-NCRSLMHHVKNIAELAALSQDELTSILGNAA 46 (63)
T ss_dssp CCHH-HHHHHHHHCSSHHHHHTCCHHHHHHHHSCHH
T ss_pred CCHH-HHHHHHHHcCCHHHHHHCCHHHHHHHcCchH
Confidence 6888 89999999999999999998777 4566554
No 10
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=36.26 E-value=13 Score=33.27 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=27.8
Q ss_pred hhhhcCCchhhhhhcccccC----C--------CCCCcceeeeccccccCChhhh
Q 036298 266 TNLANMPASEIEVLGRQKSD----N--------ISFYEGYLESTEMFQATTLCMR 308 (368)
Q Consensus 266 ~~LAk~PAstIQiLGAeKal----f--------~tpk~GlIy~s~lV~~ap~~~r 308 (368)
+.|+.+|||+=-|+=-+-.- | +.++.||||||+|=+.+-|.+|
T Consensus 44 E~l~~l~s~knyV~~VNDgrLGH~fliDiP~~~n~~r~ayiyQSDLG~galp~lr 98 (195)
T 3efy_A 44 ERLSCMPECKSFVLRVNDGALGHAYIVDIPKGENSCRPAFLYQSDLGEGVTRKLR 98 (195)
T ss_dssp HHHHTCCTTSEEEEEEEETTTTEEEEEEECSCCSTTCEEEEECCBCSSSSSCCBC
T ss_pred HHHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCcccccee
Confidence 45667777754443222211 1 3788999999999998876553
No 11
>4f8c_A Cycle inhibiting factor; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.95A {Yersinia pseudotuberculosis}
Probab=29.09 E-value=19 Score=33.70 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=18.4
Q ss_pred CCCCcceeeeccccccCChhhh
Q 036298 287 ISFYEGYLESTEMFQATTLCMR 308 (368)
Q Consensus 287 ~tpk~GlIy~s~lV~~ap~~~r 308 (368)
+.++.||||||+|=+.+-|.+|
T Consensus 171 n~~r~ayiyQSDLG~Galp~lr 192 (275)
T 4f8c_A 171 NPSRDAFLYQSDLGEGVTREVR 192 (275)
T ss_dssp SSSCEEEEECCBCCCSSSCCBC
T ss_pred CCCcceEEEecccCCCCCccee
Confidence 3689999999999998877654
No 12
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=25.66 E-value=33 Score=26.45 Aligned_cols=28 Identities=18% Similarity=0.308 Sum_probs=23.8
Q ss_pred hccHHHHHHHHHHhCchhhhhcCCchhhh
Q 036298 249 VGSGIIAAKLMAAAGALTNLANMPASEIE 277 (368)
Q Consensus 249 vG~~~vaArLIs~AGsL~~LAk~PAstIQ 277 (368)
||+. .|.+|+.+.|++.+|...+...++
T Consensus 40 IG~~-~A~~Ll~~fgs~~~l~~as~~eL~ 67 (91)
T 2a1j_B 40 VNKT-DSQTLLTTFGSLEQLIAASREDLA 67 (91)
T ss_dssp CCHH-HHHHHHHHHSSHHHHHSCCHHHHH
T ss_pred CCHH-HHHHHHHHCCCHHHHHhCCHHHHH
Confidence 6888 999999999999999887766554
No 13
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=25.01 E-value=26 Score=32.82 Aligned_cols=52 Identities=6% Similarity=0.057 Sum_probs=30.5
Q ss_pred hhhhcCCchhhhhhcccccC----C--------CCCCcceeeeccccccCChhhhhhHHHHhhhhH
Q 036298 266 TNLANMPASEIEVLGRQKSD----N--------ISFYEGYLESTEMFQATTLCMRERARQLLAEKL 319 (368)
Q Consensus 266 ~~LAk~PAstIQiLGAeKal----f--------~tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~ 319 (368)
+.|+.+|||+=-|+=-+-.- | +.++.||||||+|=+.+-|.+| ++--+..|.
T Consensus 142 E~l~~L~s~KNyV~~VNDgrLGH~flIDiPa~~~~~r~ayiYQSDLG~Galp~lr--~eDWmt~rg 205 (281)
T 3eir_A 142 EHVNTLDSHKNYVVIVNDGRLGHKFLIDLPALTQGPRTAYIIQSDLGGGALPAVR--VEDWISRRG 205 (281)
T ss_dssp HHHTTSCTTSEEEEEEEETTTTEEEEEEECCC----CCBEEECCBCCSSSSCCBC--HHHHHHHHT
T ss_pred HHHhhhhcccCEEEEEcCCCcceeEEEeccCCCCCCcceEEEecccCCCcCccee--HHHHHhhcC
Confidence 45677887764443222221 2 2689999999999998877654 343444433
No 14
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=24.03 E-value=31 Score=25.73 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=23.7
Q ss_pred hccHHHHHHHHHHhCchhhhhcCCchhhh
Q 036298 249 VGSGIIAAKLMAAAGALTNLANMPASEIE 277 (368)
Q Consensus 249 vG~~~vaArLIs~AGsL~~LAk~PAstIQ 277 (368)
||+. .|.+|+.+.|++.++...+...++
T Consensus 32 IG~~-~A~~Ll~~fgsl~~l~~a~~eeL~ 59 (78)
T 1kft_A 32 VGPK-RRQMLLKYMGGLQGLRNASVEEIA 59 (78)
T ss_dssp CSSS-HHHHHHHHHSCHHHHHHCCHHHHT
T ss_pred CCHH-HHHHHHHHcCCHHHHHHCCHHHHH
Confidence 7899 999999999999998887766554
No 15
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=23.47 E-value=29 Score=26.49 Aligned_cols=28 Identities=18% Similarity=0.308 Sum_probs=24.1
Q ss_pred hccHHHHHHHHHHhCchhhhhcCCchhhh
Q 036298 249 VGSGIIAAKLMAAAGALTNLANMPASEIE 277 (368)
Q Consensus 249 vG~~~vaArLIs~AGsL~~LAk~PAstIQ 277 (368)
||+. .|-+|+.+.|++.++...+...++
T Consensus 27 IG~~-~A~~Ll~~fgsl~~l~~a~~~eL~ 54 (89)
T 1z00_A 27 VNKT-DSQTLLTTFGSLEQLIAASREDLA 54 (89)
T ss_dssp CCHH-HHHHHHHHTCBHHHHHHCCHHHHH
T ss_pred CCHH-HHHHHHHHCCCHHHHHhCCHHHHH
Confidence 6888 999999999999999888776654
No 16
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=22.63 E-value=42 Score=24.22 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=22.5
Q ss_pred hccHHHHHHHHHHhCchhhhhcCCchhh
Q 036298 249 VGSGIIAAKLMAAAGALTNLANMPASEI 276 (368)
Q Consensus 249 vG~~~vaArLIs~AGsL~~LAk~PAstI 276 (368)
||+. +|.+|+.+.|++.+|...+...+
T Consensus 22 iG~~-~a~~Ll~~fgs~~~l~~a~~~~L 48 (75)
T 1x2i_A 22 VSAT-LARRLLKHFGSVERVFTASVAEL 48 (75)
T ss_dssp CCHH-HHHHHHHHHCSHHHHHHCCHHHH
T ss_pred CCHH-HHHHHHHHcCCHHHHHhCCHHHH
Confidence 6888 99999999999999887765544
No 17
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=21.60 E-value=98 Score=22.67 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=32.4
Q ss_pred hhhhhHhHHHHHHHHHHhhchhhhhhhhcCHHHHHHHHHHHHHHHHHH
Q 036298 73 LNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSN 120 (368)
Q Consensus 73 ~~~~~~~~r~~~~~~i~~~~~~~~~~~~id~~~~i~lld~IdkeIn~~ 120 (368)
++.-|.+||--++..=+.++..++--..|.-||+..|+-+++.||.+|
T Consensus 11 L~qKFEeIRwlIeE~Rh~Lk~TensfeQItfmqalQLlleveqeirtf 58 (58)
T 1pd3_A 11 LGQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQLLLEVEQEIRTF 58 (58)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344577777666655556665443334567789999999999998753
Done!