BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036300
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 80 EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKN-LQSLVLLEKGLTGKLPIEPSK 138
E+P S L+ SL +L+ SN +P KN LQ L L G TGK+P S
Sbjct: 355 ELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYN 198
L L L+ N ++G IP+S+G L+KL L N L G + +N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGL---VGSIEEMVSLKEMVVSNNPIFG 250
+L +IP + N N+ ++ L +N G + +G +E + LK +SNN G
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK---LSNNSFSG 525
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%)
Query: 104 LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL 163
L GTIP+S+ L L+ L L L G++P E + L L L N + G+IP+ +
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 164 TKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLRSNN 223
T L LS N L+G + S N+ IP E+G+ ++ +LDL +N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 224 FLGGLVGSI 232
F G + ++
Sbjct: 547 FNGTIPAAM 555
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 104 LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL 163
L G IP I + L L L ++G +P E L L L L+ N+++G+IP ++ L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 164 TKLLIFDLSRNNLSG 178
T L DLS NNLSG
Sbjct: 701 TMLTEIDLSNNNLSG 715
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 24/106 (22%)
Query: 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKI 204
L ++ N ++G IP IG + L I +L N++SGS I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS------------------------I 669
Query: 205 PKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
P E+G+L + LDL SN G + ++ + L E+ +SNN + G
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVN-LRRLALAGNQINGQIPA 158
S+ + +G IP LK+LQ L L E TG++P S + L L L+GN G +P
Sbjct: 252 SSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 159 SIGGLTKLLIFDLSRNNLSGSM-XXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLH-NVTF 216
G + L LS NN SG + S+N ++P+ + NL ++
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 217 LDLRSNNFLGGLVGSIEE--MVSLKEMVVSNNPIFG 250
LDL SNNF G ++ ++ + +L+E+ + NN G
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%)
Query: 128 LTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXX 187
L+G +P E + L L L N I+G IP +G L L I DLS N L G +
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 188 XXXXXXXXSYNNLQEKIPK 206
S NNL IP+
Sbjct: 701 TMLTEIDLSNNNLSGPIPE 719
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPAS 159
SN RL G IP I L+NL L L +G +P E +L L L N NG IPA+
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 160 I 160
+
Sbjct: 555 M 555
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 97 EFGSNPRLI----------GTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146
E GS P L G+IP + L+ L L L L G++P S L L +
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 147 LAGNQINGQIP 157
L+ N ++G IP
Sbjct: 708 LSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 80 EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKN-LQSLVLLEKGLTGKLPIEPSK 138
E+P S L+ SL +L+ SN +P KN LQ L L G TGK+P S
Sbjct: 358 ELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYN 198
L L L+ N ++G IP+S+G L+KL L N L G + +N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGL---VGSIEEMVSLKEMVVSNNPIFG 250
+L +IP + N N+ ++ L +N G + +G +E + LK +SNN G
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK---LSNNSFSG 528
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%)
Query: 104 LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL 163
L GTIP+S+ L L+ L L L G++P E + L L L N + G+IP+ +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 164 TKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLRSNN 223
T L LS N L+G + S N+ IP E+G+ ++ +LDL +N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 224 FLGGLVGSI 232
F G + ++
Sbjct: 550 FNGTIPAAM 558
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 104 LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL 163
L G IP I + L L L ++G +P E L L L L+ N+++G+IP ++ L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 164 TKLLIFDLSRNNLSG 178
T L DLS NNLSG
Sbjct: 704 TMLTEIDLSNNNLSG 718
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 24/106 (22%)
Query: 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKI 204
L ++ N ++G IP IG + L I +L N++SGS I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS------------------------I 672
Query: 205 PKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
P E+G+L + LDL SN G + ++ + L E+ +SNN + G
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVN-LRRLALAGNQINGQIPA 158
S+ + +G IP LK+LQ L L E TG++P S + L L L+GN G +P
Sbjct: 255 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 159 SIGGLTKLLIFDLSRNNLSGSM-XXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLH-NVTF 216
G + L LS NN SG + S+N ++P+ + NL ++
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 217 LDLRSNNFLGGLVGSIEE--MVSLKEMVVSNNPIFG 250
LDL SNNF G ++ ++ + +L+E+ + NN G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%)
Query: 128 LTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXX 187
L+G +P E + L L L N I+G IP +G L L I DLS N L G +
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 188 XXXXXXXXSYNNLQEKIPK 206
S NNL IP+
Sbjct: 704 TMLTEIDLSNNNLSGPIPE 722
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPAS 159
SN RL G IP I L+NL L L +G +P E +L L L N NG IPA+
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 160 I 160
+
Sbjct: 558 M 558
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 97 EFGSNPRLI----------GTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146
E GS P L G+IP + L+ L L L L G++P S L L +
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 147 LAGNQINGQIP 157
L+ N ++G IP
Sbjct: 711 LSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 95/245 (38%), Gaps = 58/245 (23%)
Query: 75 LQSPIEIPSSNWQKLAN--SLDSLEFGSNPRLIGTIPTSI-------------------- 112
L P IPSS LAN L+ L G L+G IP +I
Sbjct: 62 LPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117
Query: 113 -DYLKNLQSLVLLE---KGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLL- 167
D+L +++LV L+ L+G LP S L NL + GN+I+G IP S G +KL
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177
Query: 168 -----------------------IFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKI 204
DLSRN L G + N+L +
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 205 PKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNL 264
K +G N+ LDLR+N G L + ++ L + VS N + G G NLQ
Sbjct: 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRF 293
Query: 265 EIWIF 269
++ +
Sbjct: 294 DVSAY 298
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 106 GTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASI-GGLT 164
++P I N Q L L + +T P L+NL+ L L NQ+ G +P + LT
Sbjct: 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 165 KLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224
+L + DL N L+ N L E +P+ I L ++T L L N
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147
Query: 225 LGGLVGSIEEMVSLKEMVVSNNP 247
G+ + + SL + NP
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGNP 170
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 115 LKNLQSLVLLEKGLTG--KLPIEPSKLVNLRRLALAGNQINGQ-IPASIGGLTKLLIFDL 171
LK LQ+L+L GL K+ + + +L L ++ N +N + +L+ +L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 172 SRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGS 231
S N L+GS+ +NN IPK++ +L + L++ SN G
Sbjct: 436 SSNMLTGSVFRCLPPKVKVLDL---HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
Query: 232 IEEMVSLKEMVVSNNPIFGGGLNGIRW 258
+ + SL+ + + +NP + GIR+
Sbjct: 493 FDRLTSLQYIWLHDNP-WDCTCPGIRY 518
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 92 SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVL----LEKGLTGKLPIEPSKLVNLRRLAL 147
SL L+ SNP L P + L +L+L L LT KL E S +++ L+L
Sbjct: 172 SLRKLDLSSNP-LKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSL 229
Query: 148 AGNQINGQIPASIGGL--TKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIP 205
A NQ+ ++ GL T L DLS NNL YNN+Q P
Sbjct: 230 ANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Query: 206 KEIGNLHNVTFLDLR 220
+ L N+ +L L+
Sbjct: 290 RSFYGLSNLRYLSLK 304
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQ 201
L RL L GN + ++PA I L+ L + DLS N L+ ++N+
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFDNMV 305
Query: 202 EKIPKEIGNLHNVTFLDLRSN 222
+P E GNL N+ FL + N
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGN 326
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXS 196
+ L NL L LA NQI+ P S GLTKL L N +S +
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELN 291
Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG----GG 252
N L++ P I NL N+T+L L NN + + + L+ + SNN +
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFSNNKVSDVSSLAN 347
Query: 253 LNGIRW 258
L I W
Sbjct: 348 LTNINW 353
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXS 196
+ L NL L LA NQI+ P S GLTKL L N +S +
Sbjct: 235 ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELN 290
Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG----GG 252
N L++ P I NL N+T+L L NN + + + L+ + SNN +
Sbjct: 291 ENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFSNNKVSDVSSLAN 346
Query: 253 LNGIRW 258
L I W
Sbjct: 347 LTNINW 352
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXS 196
S +L +L LA N+IN + GLT LL +LS+N L S
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355
Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
YN+++ + L N+ L L +N G + + SL+++ + NP
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXS 196
+ L NL L LA NQI+ P S GLTKL L N +S +
Sbjct: 239 ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELN 294
Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG----GG 252
N L++ P I NL N+T+L L NN + + + L+ + +NN +
Sbjct: 295 ENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSDVSSLAN 350
Query: 253 LNGIRW 258
L I W
Sbjct: 351 LTNINW 356
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL--TKLLIFDL 171
+L N+Q L LT KL +E + ++R L+L+ +Q++ + GL T L + DL
Sbjct: 201 FLNNVQ----LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 172 SRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLR 220
S NNL+ YNN+Q + L NV +L+L+
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL--TKLLIFDL 171
+L N+Q L LT KL +E + ++R L+L+ +Q++ + GL T L + DL
Sbjct: 206 FLNNVQ----LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 260
Query: 172 SRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLR 220
S NNL+ YNN+Q + L NV +L+L+
Sbjct: 261 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 309
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 84 SNWQKLANS-----LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSK 138
+WQ LA++ + + G N + TS+ K L L L L GKLP S+
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSE 352
Query: 139 LVNLRRLALAGNQINGQIPASIGGLTK 165
+ L L LA NQI +IPA+ G T+
Sbjct: 353 -IKLASLNLAYNQIT-EIPANFCGFTE 377
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL--TKLLIFDL 171
+L N+Q L LT KL +E + ++R L+L+ +Q++ + GL T L + DL
Sbjct: 211 FLNNVQ----LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 265
Query: 172 SRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLR 220
S NNL+ YNN+Q + L NV +L+L+
Sbjct: 266 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 314
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 29/64 (45%)
Query: 113 DYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS 172
D L NL+ LVL+E L KL NL L LA NQ+ LT L DLS
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 173 RNNL 176
N L
Sbjct: 166 YNQL 169
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 4/138 (2%)
Query: 112 IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL 171
I YL N++ L L L ++ +L NL L L GNQ+ LT L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 172 SRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVG 230
N L ++N LQ +PK + L N+T LDL N G
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 231 SIEEMVSLKEMVVSNNPI 248
+++ LK++ + N +
Sbjct: 176 VFDKLTQLKDLRLYQNQL 193
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXS 196
+ L NL L LA NQI+ P S GLTKL L N +S +
Sbjct: 240 ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELN 295
Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG----GG 252
N L++ P I NL N+T+L L NN + + + L+ + NN +
Sbjct: 296 ENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSLAN 351
Query: 253 LNGIRW 258
L I W
Sbjct: 352 LTNINW 357
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXS 196
+ L NL L LA NQI+ P S GLTKL L N +S +
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELN 291
Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG----GG 252
N L++ P I NL N+T+L L NN + + + L+ + NN +
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSLAN 347
Query: 253 LNGIRW 258
L I W
Sbjct: 348 LTNINW 353
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXS 196
+ L NL L LA NQI+ P S GLTKL L N +S +
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELN 291
Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG----GG 252
N L++ P I NL N+T+L L NN + + + L+ + NN +
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSLAN 347
Query: 253 LNGIRW 258
L I W
Sbjct: 348 LTNINW 353
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXS 196
+ L NL L LA NQI+ P S GLTKL L N +S +
Sbjct: 235 ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELN 290
Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG----GG 252
N L++ P I NL N+T+L L NN + + + L+ + NN +
Sbjct: 291 ENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSLAN 346
Query: 253 LNGIRW 258
L I W
Sbjct: 347 LTNINW 352
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR 173
+L L+SL L +T + S+L L L+L NQI+ +P + GLTKL LS+
Sbjct: 132 HLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 174 NNLS 177
N++S
Sbjct: 188 NHIS 191
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)
Query: 112 IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL 171
I YL N++ L L L ++ +L NL L L GNQ+ LT L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 172 SRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVG 230
N L S+ Y+N + +PK + L N+T LDL +N G
Sbjct: 117 VENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 231 SIEEMVSLKEMVVSNNPI 248
+++ LK++ +++N +
Sbjct: 176 VFDKLTQLKQLSLNDNQL 193
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR 173
+L L+SL L +T + S+L L L+L NQI+ +P + GLTKL LS+
Sbjct: 129 HLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 174 NNLS 177
N++S
Sbjct: 185 NHIS 188
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR 173
+L L+SL L +T + S+L L L+L NQI+ +P + GLTKL LS+
Sbjct: 152 HLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 207
Query: 174 NNLS 177
N++S
Sbjct: 208 NHIS 211
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR 173
+L L+SL L +T + S+L L L+L NQI+ +P + GLTKL LS+
Sbjct: 132 HLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 174 NNLS 177
N++S
Sbjct: 188 NHIS 191
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR 173
+L L+SL L +T + S+L L L+L NQI+ +P + GLTKL LS+
Sbjct: 130 HLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 185
Query: 174 NNLS 177
N++S
Sbjct: 186 NHIS 189
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG 178
S+L L L+L NQI+ +P + GLTKL LS+N++S
Sbjct: 148 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 187
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS 177
S+L L L+L NQI+ +P + GLTKL LS+N++S
Sbjct: 171 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS 177
S+L L L+L NQI+ +P + GLTKL LS+N++S
Sbjct: 171 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS 177
S+L L L+L NQI+ +P + GLTKL LS+N++S
Sbjct: 171 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%)
Query: 160 IGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDL 219
G L L+ +L RN L+G N ++E K LH + L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
N + GS E + SL + +++NP
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 77 SPIE-IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI- 134
+PIE IPS + ++ SL L+ G RL + + L NL+ L L G+ I
Sbjct: 117 NPIESIPSYAFNRVP-SLRRLDLGELKRLEYISEAAFEGLVNLRYLNL---GMCNLKDIP 172
Query: 135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
+ LV L L L+GN+++ P S GLT L
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 78 PIE-IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI-E 135
PIE IPS + ++ SL L+ G RL + + L NL+ L L G+ I
Sbjct: 118 PIESIPSYAFNRVP-SLRRLDLGELKRLEYISEAAFEGLVNLRYLNL---GMCNLKDIPN 173
Query: 136 PSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
+ LV L L L+GN+++ P S GLT L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 77 SPIE-IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE 135
+PIE IPS + ++ SL L+ G RL + + L NL+ L L L +
Sbjct: 146 NPIESIPSYAFNRIP-SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT 204
Query: 136 PSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
P L+ L L L+GN ++ P S GL L
Sbjct: 205 P--LIKLDELDLSGNHLSAIRPGSFQGLMHL 233
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 74/202 (36%), Gaps = 65/202 (32%)
Query: 61 NSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRL------------IGTI 108
NS+ CS K+ P P + + Q +N L SL + RL + T+
Sbjct: 19 NSVDCSSKKLTAIPSNIPADTKKLDLQ--SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 109 PTSI-DYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGNQINGQIPASIGGLTKL 166
P I LKNL++L + + L LPI +LVNL L L NQ+ P LTKL
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 167 LIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226
L YN LQ +PK
Sbjct: 136 TYLSLG------------------------YNELQS-LPK-------------------- 150
Query: 227 GLVGSIEEMVSLKEMVVSNNPI 248
G +++ SLKE+ + NN +
Sbjct: 151 ---GVFDKLTSLKELRLYNNQL 169
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 41/108 (37%)
Query: 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQ 201
LRR+ L+ NQI+ P + GL L L N ++ + N +
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 202 EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF 249
+LHN+ L L N G+ + +++ M ++ NP
Sbjct: 118 XLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 204 IPKEIGNLHNVTFLDLRSNNFLGGLVG-SIEEMVSLKEMVVSNN------PIFGGGLNGI 256
+PKE+ N ++T +DL SNN + L S M L +++S N P GL +
Sbjct: 46 VPKELSNYKHLTLIDL-SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 257 RWENLQNLEIWI 268
R +L +I +
Sbjct: 105 RLLSLHGNDISV 116
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYN 198
L +L L L GN I + GL+ L NL+ ++N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 199 NLQE-KIPKEIGNLHNVTFLDLRSN 222
+Q K+P+ NL N+ LDL SN
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 26/87 (29%)
Query: 80 EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
E+PS + L N L+S+EFGSN L + +G+ GK+P
Sbjct: 160 EMPSHLFDDLEN-LESIEFGSN------------------KLRQMPRGIFGKMP------ 194
Query: 140 VNLRRLALAGNQINGQIPASIGGLTKL 166
L++L LA NQ+ LT L
Sbjct: 195 -KLKQLNLASNQLKSVPDGIFDRLTSL 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,884,190
Number of Sequences: 62578
Number of extensions: 310343
Number of successful extensions: 715
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 123
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)