Query 036300
Match_columns 269
No_of_seqs 353 out of 2850
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 11:18:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.4E-32 1.6E-36 264.4 19.8 254 2-268 27-314 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.1E-24 4.6E-29 211.9 14.1 187 78-269 153-339 (968)
3 KOG4194 Membrane glycoprotein 99.8 6.7E-22 1.4E-26 174.6 0.8 190 76-269 183-372 (873)
4 KOG0617 Ras suppressor protein 99.8 2E-22 4.4E-27 153.1 -4.3 162 90-260 32-194 (264)
5 KOG4194 Membrane glycoprotein 99.8 5.8E-20 1.3E-24 162.4 5.2 189 76-268 135-347 (873)
6 KOG0444 Cytoskeletal regulator 99.8 2.1E-20 4.5E-25 166.6 -4.1 148 70-223 130-302 (1255)
7 KOG4237 Extracellular matrix p 99.7 1.3E-19 2.9E-24 153.4 -1.9 196 69-269 70-353 (498)
8 KOG0444 Cytoskeletal regulator 99.7 1.5E-19 3.3E-24 161.2 -2.3 201 57-266 94-320 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 4.8E-19 1E-23 150.5 0.4 200 61-269 223-535 (565)
10 KOG0617 Ras suppressor protein 99.7 6.8E-20 1.5E-24 139.4 -5.5 152 111-269 28-180 (264)
11 PLN03150 hypothetical protein; 99.7 7.4E-17 1.6E-21 150.8 11.9 150 2-200 370-527 (623)
12 KOG0472 Leucine-rich repeat pr 99.7 1E-19 2.2E-24 154.5 -7.5 178 77-268 125-303 (565)
13 KOG4237 Extracellular matrix p 99.6 1.3E-17 2.7E-22 141.6 -0.7 184 78-269 58-329 (498)
14 KOG0618 Serine/threonine phosp 99.6 9.6E-18 2.1E-22 155.0 -3.8 203 57-269 255-483 (1081)
15 PRK15370 E3 ubiquitin-protein 99.6 9.8E-15 2.1E-19 137.9 16.2 31 1-34 60-98 (754)
16 PLN03210 Resistant to P. syrin 99.6 2.9E-14 6.3E-19 142.1 15.5 58 91-150 657-714 (1153)
17 PLN03210 Resistant to P. syrin 99.6 6.3E-14 1.4E-18 139.7 15.1 168 91-268 634-831 (1153)
18 cd00116 LRR_RI Leucine-rich re 99.6 1.7E-15 3.7E-20 130.7 3.4 155 93-248 110-290 (319)
19 cd00116 LRR_RI Leucine-rich re 99.5 1.6E-15 3.4E-20 131.0 2.2 178 90-269 80-285 (319)
20 KOG0618 Serine/threonine phosp 99.5 5.7E-16 1.2E-20 143.5 -1.3 145 115-265 358-503 (1081)
21 PRK15370 E3 ubiquitin-protein 99.5 1.8E-14 3.9E-19 136.2 8.6 34 117-153 263-296 (754)
22 PRK15387 E3 ubiquitin-protein 99.5 8E-14 1.7E-18 131.4 10.9 34 214-248 424-457 (788)
23 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 130.5 9.3 154 91-269 282-452 (788)
24 KOG0532 Leucine-rich repeat (L 99.4 1.5E-15 3.3E-20 134.3 -6.0 171 72-255 81-251 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 1.4E-14 3.1E-19 128.2 -1.6 179 78-268 62-240 (722)
26 PLN03150 hypothetical protein; 99.4 2.4E-12 5.1E-17 120.7 9.7 107 142-248 420-527 (623)
27 PF14580 LRR_9: Leucine-rich r 99.4 8.1E-13 1.8E-17 103.5 5.0 129 112-244 15-148 (175)
28 PF14580 LRR_9: Leucine-rich r 99.3 2.5E-12 5.3E-17 100.8 6.0 122 91-218 19-146 (175)
29 COG4886 Leucine-rich repeat (L 99.3 1.4E-12 3.1E-17 116.2 4.9 167 91-268 116-283 (394)
30 COG4886 Leucine-rich repeat (L 99.2 4.8E-12 1E-16 112.8 4.5 173 71-254 121-294 (394)
31 KOG3207 Beta-tubulin folding c 99.2 1.6E-12 3.5E-17 112.1 -0.7 175 76-254 131-317 (505)
32 KOG1259 Nischarin, modulator o 99.2 4.5E-12 9.7E-17 104.9 0.6 121 140-267 284-404 (490)
33 KOG1259 Nischarin, modulator o 99.1 4.2E-12 9.2E-17 105.1 -1.3 129 114-248 282-411 (490)
34 PF13855 LRR_8: Leucine rich r 99.0 3E-10 6.4E-15 73.5 2.9 61 188-248 1-61 (61)
35 PF13855 LRR_8: Leucine rich r 99.0 4E-10 8.7E-15 72.9 3.5 57 118-174 3-59 (61)
36 KOG3207 Beta-tubulin folding c 98.9 1.3E-10 2.9E-15 100.5 -0.1 177 91-269 121-308 (505)
37 KOG1909 Ran GTPase-activating 98.8 2.1E-09 4.5E-14 90.7 1.6 110 139-248 184-310 (382)
38 KOG4658 Apoptotic ATPase [Sign 98.7 7.4E-09 1.6E-13 99.9 2.9 131 62-195 541-675 (889)
39 KOG1909 Ran GTPase-activating 98.7 7.8E-09 1.7E-13 87.3 2.7 178 90-268 91-304 (382)
40 KOG4658 Apoptotic ATPase [Sign 98.7 6.3E-09 1.4E-13 100.4 2.2 128 91-219 545-675 (889)
41 KOG1859 Leucine-rich repeat pr 98.6 1.1E-09 2.3E-14 100.4 -4.6 101 142-248 166-266 (1096)
42 KOG2120 SCF ubiquitin ligase, 98.6 6.9E-10 1.5E-14 91.9 -5.5 177 91-269 185-370 (419)
43 KOG1859 Leucine-rich repeat pr 98.6 4.5E-10 9.7E-15 102.8 -8.5 125 117-248 165-291 (1096)
44 KOG0531 Protein phosphatase 1, 98.6 7.6E-09 1.7E-13 92.8 -0.8 104 91-201 95-199 (414)
45 KOG2982 Uncharacterized conser 98.5 6.3E-08 1.4E-12 80.5 3.9 181 86-268 66-285 (418)
46 PF08263 LRRNT_2: Leucine rich 98.5 1.4E-07 3E-12 56.2 3.9 36 3-42 2-43 (43)
47 KOG4579 Leucine-rich repeat (L 98.4 1.7E-08 3.6E-13 74.7 -2.2 133 116-254 27-163 (177)
48 KOG4579 Leucine-rich repeat (L 98.4 7.5E-09 1.6E-13 76.5 -4.4 133 91-229 27-163 (177)
49 KOG0531 Protein phosphatase 1, 98.4 5.7E-08 1.2E-12 87.2 -0.7 148 91-248 72-220 (414)
50 PF12799 LRR_4: Leucine Rich r 98.1 3.2E-06 7E-11 50.5 3.8 36 212-248 1-36 (44)
51 PF12799 LRR_4: Leucine Rich r 98.1 3.3E-06 7.1E-11 50.5 3.7 35 142-177 3-37 (44)
52 KOG1644 U2-associated snRNP A' 98.1 5.2E-06 1.1E-10 65.5 5.6 106 140-247 42-151 (233)
53 KOG2120 SCF ubiquitin ligase, 98.1 2.2E-07 4.7E-12 77.4 -3.4 156 90-248 209-375 (419)
54 KOG3665 ZYG-1-like serine/thre 98.0 2.2E-06 4.8E-11 81.1 2.2 151 91-243 122-282 (699)
55 KOG1644 U2-associated snRNP A' 98.0 1E-05 2.2E-10 63.9 5.0 127 93-224 21-152 (233)
56 PRK15386 type III secretion pr 98.0 2.7E-05 5.8E-10 68.8 7.7 112 90-222 71-187 (426)
57 PRK15386 type III secretion pr 97.9 4.4E-05 9.6E-10 67.4 8.7 134 90-247 51-188 (426)
58 KOG3665 ZYG-1-like serine/thre 97.9 2.6E-06 5.6E-11 80.6 0.6 147 116-265 122-278 (699)
59 KOG2982 Uncharacterized conser 97.9 1.4E-06 3.1E-11 72.6 -1.3 176 91-268 45-255 (418)
60 PF13306 LRR_5: Leucine rich r 97.8 8.9E-05 1.9E-09 55.0 7.7 126 81-214 3-128 (129)
61 KOG2739 Leucine-rich acidic nu 97.8 6E-06 1.3E-10 67.6 1.1 61 114-176 41-103 (260)
62 PF13306 LRR_5: Leucine rich r 97.8 7.5E-05 1.6E-09 55.4 6.5 84 111-197 7-90 (129)
63 COG5238 RNA1 Ran GTPase-activa 97.8 3.7E-05 8.1E-10 63.6 5.0 157 90-248 91-284 (388)
64 COG5238 RNA1 Ran GTPase-activa 97.8 1.9E-05 4.2E-10 65.2 3.2 156 91-248 58-254 (388)
65 KOG2739 Leucine-rich acidic nu 97.6 4.7E-05 1E-09 62.4 2.7 110 132-244 35-151 (260)
66 KOG2123 Uncharacterized conser 97.2 2.3E-05 4.9E-10 65.0 -3.2 82 139-224 18-100 (388)
67 KOG2123 Uncharacterized conser 96.9 4.4E-05 9.6E-10 63.3 -4.4 98 91-194 19-123 (388)
68 KOG1947 Leucine rich repeat pr 95.9 0.00083 1.8E-08 61.1 -2.5 174 90-264 187-389 (482)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.0042 9E-08 30.9 1.1 18 214-232 2-19 (22)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0039 8.4E-08 31.0 0.7 11 143-153 3-13 (22)
71 KOG1947 Leucine rich repeat pr 95.1 0.0074 1.6E-07 54.9 0.8 13 235-247 294-306 (482)
72 KOG0473 Leucine-rich repeat pr 95.0 0.00045 9.8E-09 56.1 -6.5 94 79-177 31-124 (326)
73 KOG4308 LRR-containing protein 94.9 0.00038 8.2E-09 63.4 -8.3 132 117-248 145-302 (478)
74 PF13504 LRR_7: Leucine rich r 93.8 0.041 8.9E-07 25.4 1.3 9 143-151 4-12 (17)
75 KOG0473 Leucine-rich repeat pr 93.6 0.0012 2.7E-08 53.6 -6.8 85 112-199 38-122 (326)
76 KOG4341 F-box protein containi 93.4 0.028 6E-07 49.6 0.6 129 139-268 293-432 (483)
77 KOG3864 Uncharacterized conser 92.8 0.042 9E-07 43.8 0.7 79 142-220 103-184 (221)
78 KOG4341 F-box protein containi 91.8 0.051 1.1E-06 48.0 0.1 131 137-267 317-457 (483)
79 smart00369 LRR_TYP Leucine-ric 91.8 0.16 3.4E-06 26.1 2.0 18 236-255 2-19 (26)
80 smart00370 LRR Leucine-rich re 91.8 0.16 3.4E-06 26.1 2.0 18 236-255 2-19 (26)
81 smart00370 LRR Leucine-rich re 91.0 0.24 5.2E-06 25.4 2.2 16 212-227 2-17 (26)
82 smart00369 LRR_TYP Leucine-ric 91.0 0.24 5.2E-06 25.4 2.2 16 212-227 2-17 (26)
83 PF13516 LRR_6: Leucine Rich r 90.8 0.09 1.9E-06 26.5 0.4 18 212-229 2-19 (24)
84 KOG3864 Uncharacterized conser 90.6 0.058 1.3E-06 43.0 -0.7 81 117-197 102-185 (221)
85 KOG4308 LRR-containing protein 89.8 0.0063 1.4E-07 55.5 -7.6 155 93-248 146-330 (478)
86 smart00365 LRR_SD22 Leucine-ri 79.2 1.9 4.1E-05 22.3 1.8 14 212-225 2-15 (26)
87 KOG3763 mRNA export factor TAP 77.7 1.4 3E-05 40.6 1.8 63 162-226 216-284 (585)
88 smart00364 LRR_BAC Leucine-ric 77.5 1.7 3.6E-05 22.5 1.3 13 117-129 3-15 (26)
89 smart00368 LRR_RI Leucine rich 72.4 3.4 7.3E-05 21.6 1.8 15 212-226 2-16 (28)
90 KOG3763 mRNA export factor TAP 69.1 4.2 9.2E-05 37.5 2.7 62 185-248 215-282 (585)
91 smart00367 LRR_CC Leucine-rich 61.5 5.3 0.00011 20.3 1.2 15 91-105 2-16 (26)
92 TIGR00864 PCC polycystin catio 31.8 37 0.0008 37.9 2.7 32 170-201 1-32 (2740)
93 PF05725 FNIP: FNIP Repeat; I 26.8 1.2E+02 0.0025 17.5 3.2 9 91-99 12-20 (44)
94 TIGR00864 PCC polycystin catio 23.3 54 0.0012 36.7 2.1 32 122-153 1-32 (2740)
95 KOG4242 Predicted myosin-I-bin 22.6 85 0.0018 28.9 2.9 16 237-253 355-370 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.4e-32 Score=264.42 Aligned_cols=254 Identities=31% Similarity=0.431 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHHhcccC-----CCCCCCCCCCCCCCCCCCCceEeecCCCceEEEEEEeCC------CCCCCcccccccc
Q 036300 2 ERKEKEALYSTIQGFVG-----KWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGP------VYDNSLVCSQCKI 70 (269)
Q Consensus 2 ~~~~~~~l~~~~~~~~~-----~~W~~~~~~~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~------~~~~~~~~~~l~~ 70 (269)
.++|++||++|++++.+ .+|+.. .++|.|. ||+|+..+ +|+.|++.. +++.....+.+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~---~~~c~w~---gv~c~~~~---~v~~L~L~~~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQ---GITCNNSS---RVVSIDLSGKNISGKISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC---CCCCcCc---ceecCCCC---cEEEEEecCCCccccCChHHhCCCCCCE
Confidence 46899999999999864 468655 3899998 99998654 899999842 2222223445555
Q ss_pred cCCCCC-CCcccCchhHHhhcCCccEEEccCCCCceeccC----------------------ccccCCCCCCEEEcccCC
Q 036300 71 FKPPLQ-SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP----------------------TSIDYLKNLQSLVLLEKG 127 (269)
Q Consensus 71 ~~~~~~-~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p----------------------~~l~~l~~L~~L~L~~n~ 127 (269)
+....+ +.|.+|..++..+ ++|++|++++| .+.+.+| ..++.+++|++|++++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l-~~L~~L~Ls~n-~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTS-SSLRYLNLSNN-NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccC-CCCCEEECcCC-ccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 554443 3467887776444 66777776666 5555444 444444444444444444
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchh
Q 036300 128 LTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKE 207 (269)
Q Consensus 128 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 207 (269)
+.+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|++|++++|++.+.+|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 44444444444444555555444444444444444555555555555554444545555555555555555555445555
Q ss_pred hcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 208 IGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 208 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
++++++|++|++++|.+++.+|..+..+++|++|++++|.+ .+.+|. .+.++++|+.|+
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~-~~~~l~~L~~L~ 314 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPE-LVIQLQNLEILH 314 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee-ccCCCh-hHcCCCCCcEEE
Confidence 55555555555555555555555555555555555555555 444443 445555555554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.1e-24 Score=211.90 Aligned_cols=187 Identities=33% Similarity=0.487 Sum_probs=174.2
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP 157 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 157 (269)
.+.+|..+ ..+ ++|++|++++| .+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|
T Consensus 153 ~~~~p~~~-~~l-~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 153 SGEIPNDI-GSF-SSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred cccCChHH-hcC-CCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 35677665 444 89999999999 7889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300 158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS 237 (269)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 237 (269)
..+..+++|++|++++|.+++.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 238 LKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 238 L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
|++|++++|.+ .+.+|. .+..+++|+.|++
T Consensus 310 L~~L~l~~n~~-~~~~~~-~~~~l~~L~~L~L 339 (968)
T PLN00113 310 LEILHLFSNNF-TGKIPV-ALTSLPRLQVLQL 339 (968)
T ss_pred CcEEECCCCcc-CCcCCh-hHhcCCCCCEEEC
Confidence 99999999999 777775 7889999999875
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=6.7e-22 Score=174.55 Aligned_cols=190 Identities=26% Similarity=0.243 Sum_probs=105.8
Q ss_pred CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300 76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ 155 (269)
Q Consensus 76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 155 (269)
|.++.+-..-|..+ .+|..|.|++| +++..-+..|.+|++|+.|+|..|++...-...|.++++|+.|.|..|.+...
T Consensus 183 N~It~l~~~~F~~l-nsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 183 NRITTLETGHFDSL-NSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred cccccccccccccc-chheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 34444444444443 34444444444 33333333444455555555555554422233445555555555555555433
Q ss_pred CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcC
Q 036300 156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEM 235 (269)
Q Consensus 156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 235 (269)
-...|..+.++++|++..|+++..-..++.++.+|+.|++|+|.+...-++.+...++|++|+|++|.|+...++.|..+
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH
Confidence 33455566666666666666665445556666677777777776666666666666677777777777766666666666
Q ss_pred CCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 236 VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 236 ~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
..|++|+|+.|.+ +.+....|..+++|+.|||
T Consensus 341 ~~Le~LnLs~Nsi--~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 341 SQLEELNLSHNSI--DHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred HHhhhhcccccch--HHHHhhHHHHhhhhhhhcC
Confidence 6666666666666 4454445555555555553
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.82 E-value=2e-22 Score=153.13 Aligned_cols=162 Identities=30% Similarity=0.482 Sum_probs=145.9
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
+.+++.|.+++| ++ ..+|+.++.+.+|+.|++.+|++. .+|.+++.+++|+.|++.-|++. .+|..|+.+|.|+.|
T Consensus 32 ~s~ITrLtLSHN-Kl-~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KL-TVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccC-ce-eecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 377899999999 44 457889999999999999999999 89999999999999999999998 899999999999999
Q ss_pred EccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 170 DLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 170 ~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
++++|++.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|++.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 999999863 67888889999999999999998 68889999999999999999987 7899999999999999999999
Q ss_pred CCCCCCcccccc
Q 036300 249 FGGGLNGIRWEN 260 (269)
Q Consensus 249 ~~~~~p~~~~~~ 260 (269)
..+|+ .+++
T Consensus 186 --~vlpp-el~~ 194 (264)
T KOG0617|consen 186 --TVLPP-ELAN 194 (264)
T ss_pred --eecCh-hhhh
Confidence 66775 3443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=5.8e-20 Score=162.41 Aligned_cols=189 Identities=26% Similarity=0.192 Sum_probs=102.7
Q ss_pred CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300 76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ 155 (269)
Q Consensus 76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 155 (269)
|.+.++..+..+.+ +.|++|||+.| .+...--+.|..-.++++|+|++|.|+..-...|.++.+|.+|.|+.|+++..
T Consensus 135 N~I~sv~se~L~~l-~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 135 NLISSVTSEELSAL-PALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred cccccccHHHHHhH-hhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 44455555444433 55666666666 34332223455555666666666666655555666666666666666666633
Q ss_pred CccccCCCCCCCEEEccCCcCCchhhhh------------------------hcCcccCCEEeCcCCcCCCcCchhhcCC
Q 036300 156 IPASIGGLTKLLIFDLSRNNLSGSMLLT------------------------LGKLARLLKLDLSYNNLQEKIPKEIGNL 211 (269)
Q Consensus 156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~L~ls~n~l~~~~p~~~~~l 211 (269)
.+..|.++++|+.|++..|++.-.-... |..+.++++|+|+.|++...-..++.++
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 3345555666666666666554221222 3334444444444454443333444555
Q ss_pred CCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
++|+.|+|+.|.|...-++.+...++|+.|+|++|++ ..+++..|..+..|+.|+
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i--~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI--TRLDEGSFRVLSQLEELN 347 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEecccccc--ccCChhHHHHHHHhhhhc
Confidence 5666666666666555555555566666666666666 444444555555555554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=2.1e-20 Score=166.58 Aligned_cols=148 Identities=28% Similarity=0.416 Sum_probs=86.8
Q ss_pred ccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCC-------------------
Q 036300 70 IFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTG------------------- 130 (269)
Q Consensus 70 ~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------------- 130 (269)
.+..+.|.+-+||...|.++ ..|-.|||++| + ...+|+.+..+..|+.|.|++|.+..
T Consensus 130 VLNLS~N~IetIPn~lfinL-tDLLfLDLS~N-r-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINL-TDLLFLDLSNN-R-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred EEEcccCccccCCchHHHhh-HhHhhhccccc-h-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 34445577778888887776 77888888888 3 34567777777777777777776541
Q ss_pred ------CCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcC
Q 036300 131 ------KLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI 204 (269)
Q Consensus 131 ------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 204 (269)
.+|.++-++.+|..+|++.|.+. .+|+.+-++++|+.|++++|.++ .+....+.+.+|++|++|.|+++ .+
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~L 283 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VL 283 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cc
Confidence 24555555666666666666666 66666666666666666666655 33333333444444444444444 23
Q ss_pred chhhcCCCCCCEEEccCCc
Q 036300 205 PKEIGNLHNVTFLDLRSNN 223 (269)
Q Consensus 205 p~~~~~l~~L~~L~L~~N~ 223 (269)
|..+.++++|+.|.+.+|+
T Consensus 284 P~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred hHHHhhhHHHHHHHhccCc
Confidence 4444444444444433333
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=1.3e-19 Score=153.44 Aligned_cols=196 Identities=22% Similarity=0.230 Sum_probs=142.4
Q ss_pred cccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEccc-CCCCCCCCCCCCCCCCCCEEE-
Q 036300 69 KIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLE-KGLTGKLPIEPSKLVNLRRLA- 146 (269)
Q Consensus 69 ~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~- 146 (269)
..+....|.+.+||+..|+.+ ++|++|||++| .|+..-|.+|..++.|..|.+.+ |+|+......|.++..|+.|.
T Consensus 70 veirLdqN~I~~iP~~aF~~l-~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTL-HRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eEEEeccCCcccCChhhccch-hhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 344555689999999999998 99999999999 79888899999999988887766 888844334565555555444
Q ss_pred -----------------------ccCCcCCCCCcc-ccCCCCCCCEEEccCCcCC-------------------------
Q 036300 147 -----------------------LAGNQINGQIPA-SIGGLTKLLIFDLSRNNLS------------------------- 177 (269)
Q Consensus 147 -----------------------L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~------------------------- 177 (269)
+.+|.+. .++. .|..+.+++++.+..|.+-
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 4444444 3332 4555555555555554410
Q ss_pred ------------------------------------chhh-hhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEcc
Q 036300 178 ------------------------------------GSML-LTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLR 220 (269)
Q Consensus 178 ------------------------------------~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 220 (269)
+..| ..|..+++|+.|++++|++++.-+.+|.+..++++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 0011 246677888889999998888778888888888999998
Q ss_pred CCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 221 SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 221 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.|++...-...|.++..|+.|+|.+|+| +...| ..|..+.+|..|.+
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~i-t~~~~-~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQI-TTVAP-GAFQTLFSLSTLNL 353 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCee-EEEec-ccccccceeeeeeh
Confidence 8888766667888889999999999998 44444 37777777777653
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=1.5e-19 Score=161.16 Aligned_cols=201 Identities=27% Similarity=0.336 Sum_probs=110.7
Q ss_pred CCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCc-cccCCCCCCEEEcccCCCCCCCCCC
Q 036300 57 PVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPT-SIDYLKNLQSLVLLEKGLTGKLPIE 135 (269)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~ 135 (269)
.+|+..+....++.+..+.|.+.++|.+. ...+++-+|+|++| ++ ..+|. -|.++..|-.|+|++|++. .+|..
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~L--E~AKn~iVLNLS~N-~I-etIPn~lfinLtDLLfLDLS~NrLe-~LPPQ 168 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNL--EYAKNSIVLNLSYN-NI-ETIPNSLFINLTDLLFLDLSNNRLE-MLPPQ 168 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhh--hhhcCcEEEEcccC-cc-ccCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence 34444455555555555556666666554 22355666666666 33 33443 3445666666666666665 55555
Q ss_pred CCCCCCCCEEEccCCcCC-------------------------CCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300 136 PSKLVNLRRLALAGNQIN-------------------------GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL 190 (269)
Q Consensus 136 ~~~l~~L~~L~L~~n~l~-------------------------~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 190 (269)
+..+..|++|+|++|.+. ..+|.++..+.+|..++++.|.+. .+|..+.++++|
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L 247 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL 247 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh
Confidence 666666666666665432 123344444445555555555554 455555556666
Q ss_pred CEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCce
Q 036300 191 LKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266 (269)
Q Consensus 191 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~ 266 (269)
+.|+||+|+++. +.-..+.+.+|++|+++.|+++ .+|.++..+++|+.|.+.+|+++-..+|+ .++++..|+.
T Consensus 248 rrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Lev 320 (1255)
T KOG0444|consen 248 RRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEV 320 (1255)
T ss_pred heeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHH
Confidence 666666666552 3334445555666666666665 55666666666666666666664455554 4555555544
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=4.8e-19 Score=150.52 Aligned_cols=200 Identities=27% Similarity=0.371 Sum_probs=134.7
Q ss_pred CCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCC
Q 036300 61 NSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLV 140 (269)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 140 (269)
...+|..+..+..+.+++..+|++....+ +++.+||++.|+ ..++|..+..+.+|++||+++|.++ .+|.+++++
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L-~~l~vLDLRdNk--lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl- 297 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPAEHLKHL-NSLLVLDLRDNK--LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL- 297 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHHHHhccc-ccceeeeccccc--cccCchHHHHhhhhhhhcccCCccc-cCCcccccc-
Confidence 45678788888888888999999887666 889999999994 4568888888999999999999998 677788887
Q ss_pred CCCEEEccCCcCCC----------------------------------------------------------------CC
Q 036300 141 NLRRLALAGNQING----------------------------------------------------------------QI 156 (269)
Q Consensus 141 ~L~~L~L~~n~l~~----------------------------------------------------------------~~ 156 (269)
.|+.|-+.+|.+.. .+
T Consensus 298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V 377 (565)
T KOG0472|consen 298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV 377 (565)
T ss_pred eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC
Confidence 77777776665421 01
Q ss_pred ccccCCCC---CCCEEEccCCcCC-----------------------chhhhhhcCcccCCEEeCcCCcCCCcCchhhcC
Q 036300 157 PASIGGLT---KLLIFDLSRNNLS-----------------------GSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210 (269)
Q Consensus 157 p~~l~~l~---~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 210 (269)
|+...... -.+..+++.|++. +.+|..+..+++|..|++++|-+. .+|..++.
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence 11000000 1233344444332 123444555666777777776665 46666666
Q ss_pred CCCCCEEEccCCccC-----------------------CcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300 211 LHNVTFLDLRSNNFL-----------------------GGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW 267 (269)
Q Consensus 211 l~~L~~L~L~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L 267 (269)
+..|+.|+++.|+|. ...+..+.+|.+|+.||+.+|.+ ..+|+ .+++|.+|+.|
T Consensus 457 lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl--q~IPp-~LgnmtnL~hL 533 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL--QQIPP-ILGNMTNLRHL 533 (565)
T ss_pred hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch--hhCCh-hhccccceeEE
Confidence 666777777766653 12233366678888888888888 77776 78888888887
Q ss_pred cC
Q 036300 268 IF 269 (269)
Q Consensus 268 ~l 269 (269)
++
T Consensus 534 eL 535 (565)
T KOG0472|consen 534 EL 535 (565)
T ss_pred Ee
Confidence 64
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=6.8e-20 Score=139.44 Aligned_cols=152 Identities=29% Similarity=0.408 Sum_probs=138.3
Q ss_pred cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300 111 SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL 190 (269)
Q Consensus 111 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 190 (269)
.+..+.+++.|.+++|.++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3456788899999999999 78889999999999999999999 89999999999999999999998 889999999999
Q ss_pred CEEeCcCCcCCC-cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 191 LKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 191 ~~L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+.||+++|++.. .+|..|..++.|+.|.|+.|.+. .+|..++++++|+.|.+..|.+ -.+|. .++.+..|+.|.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl--l~lpk-eig~lt~lrelhi 180 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL--LSLPK-EIGDLTRLRELHI 180 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch--hhCcH-HHHHHHHHHHHhc
Confidence 999999999875 57888999999999999999997 7889999999999999999999 77886 7788888877653
No 11
>PLN03150 hypothetical protein; Provisional
Probab=99.71 E-value=7.4e-17 Score=150.79 Aligned_cols=150 Identities=33% Similarity=0.499 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHhcccC---CCCCCCCCCCCCCC--CCCCCceEeecCC--CceEEEEEEeCCCCCCCcccccccccCCC
Q 036300 2 ERKEKEALYSTIQGFVG---KWWNGSDLYPDPFG--RTGLQGVSCDFFH--GLWHVSAISIGPVYDNSLVCSQCKIFKPP 74 (269)
Q Consensus 2 ~~~~~~~l~~~~~~~~~---~~W~~~~~~~~~C~--~~~~~gv~C~~~~--~~~~v~~l~l~~~~~~~~~~~~l~~~~~~ 74 (269)
.++|++||.++|+++.. .+|.+ ++|. +..|.||.|.... +.++
T Consensus 370 ~~~~~~aL~~~k~~~~~~~~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~------------------------- 419 (623)
T PLN03150 370 LLEEVSALQTLKSSLGLPLRFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWF------------------------- 419 (623)
T ss_pred CchHHHHHHHHHHhcCCcccCCCCC-----CCCCCcccccccceeeccCCCCceE-------------------------
Confidence 46799999999999865 37854 5662 1234599996322 1112
Q ss_pred CCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCC
Q 036300 75 LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQING 154 (269)
Q Consensus 75 ~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 154 (269)
++.|+|++| .+.+.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|++++
T Consensus 420 ------------------v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg 480 (623)
T PLN03150 420 ------------------IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480 (623)
T ss_pred ------------------EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC
Confidence 445555555 5555666666666666666666666666666666666666666666666666
Q ss_pred CCccccCCCCCCCEEEccCCcCCchhhhhhcCc-ccCCEEeCcCCcC
Q 036300 155 QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKL-ARLLKLDLSYNNL 200 (269)
Q Consensus 155 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l 200 (269)
.+|..+..+++|++|++++|.+++.+|..+... .++..+++.+|..
T Consensus 481 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 666666666666666666666666666555432 3445555555543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=1e-19 Score=154.53 Aligned_cols=178 Identities=26% Similarity=0.377 Sum_probs=124.1
Q ss_pred CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC
Q 036300 77 SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQI 156 (269)
Q Consensus 77 ~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 156 (269)
...++|++++. +..++.++..+| .+ ..+|+.+..+.+|..+++.+|.+. ..|+..-+++.|+.+|...|-++ .+
T Consensus 125 ~~~el~~~i~~--~~~l~dl~~~~N-~i-~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 125 ELKELPDSIGR--LLDLEDLDATNN-QI-SSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred ceeecCchHHH--Hhhhhhhhcccc-cc-ccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cC
Confidence 34444444433 234444444444 22 234445555555555555555555 33333334667777777777776 77
Q ss_pred ccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhc-CCCCCCEEEccCCccCCcchhhhhcC
Q 036300 157 PASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG-NLHNVTFLDLRSNNFLGGLVGSIEEM 235 (269)
Q Consensus 157 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l 235 (269)
|..++.+.+|+.|++.+|++. .+| .|..+..|.+++++.|++. .+|.... ++.++..|||+.|+++ ..|..+.-+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 888888888888888888887 666 6778888888888888887 5665554 8899999999999998 788888889
Q ss_pred CCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 236 VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 236 ~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
.+|.+||+++|.+ ..+|. .++++ .|+.|.
T Consensus 275 rsL~rLDlSNN~i--s~Lp~-sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 275 RSLERLDLSNNDI--SSLPY-SLGNL-HLKFLA 303 (565)
T ss_pred hhhhhhcccCCcc--ccCCc-ccccc-eeeehh
Confidence 9999999999999 66775 78887 777664
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=1.3e-17 Score=141.60 Aligned_cols=184 Identities=24% Similarity=0.305 Sum_probs=141.0
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccC-CcCCCCC
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG-NQINGQI 156 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~ 156 (269)
+.+||.++ ++....++|..| .|....+.+|+.+++|+.|+|++|+|+.+.|.+|.++++|..|-+.+ |+|+ .+
T Consensus 58 L~eVP~~L----P~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l 131 (498)
T KOG4237|consen 58 LTEVPANL----PPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DL 131 (498)
T ss_pred cccCcccC----CCcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hh
Confidence 34566654 678899999999 78777777999999999999999999999999999999988887776 8888 44
Q ss_pred c-cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCC----------------------------------
Q 036300 157 P-ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ---------------------------------- 201 (269)
Q Consensus 157 p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~---------------------------------- 201 (269)
| ..|.++.+|+.|.+.-|.+.-.....|..++++..|.+.+|.+.
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 4 45666666666666666555444444444444444444443322
Q ss_pred ---------------------------------------------------CcCc-hhhcCCCCCCEEEccCCccCCcch
Q 036300 202 ---------------------------------------------------EKIP-KEIGNLHNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 202 ---------------------------------------------------~~~p-~~~~~l~~L~~L~L~~N~l~~~~~ 229 (269)
+..| ..|..+++|+.|+|++|++++..+
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 1112 357788999999999999999889
Q ss_pred hhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 230 GSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 230 ~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.+|.+...+++|.|..|++ ..+....|.++..|+.|+|
T Consensus 292 ~aFe~~a~l~eL~L~~N~l--~~v~~~~f~~ls~L~tL~L 329 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKL--EFVSSGMFQGLSGLKTLSL 329 (498)
T ss_pred hhhcchhhhhhhhcCcchH--HHHHHHhhhccccceeeee
Confidence 9999999999999999999 6677678999999998865
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=9.6e-18 Score=155.05 Aligned_cols=203 Identities=25% Similarity=0.282 Sum_probs=133.9
Q ss_pred CCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCC
Q 036300 57 PVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP 136 (269)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 136 (269)
.+|+....|.+++.++...+.+..+|..++. ..+|+.|....| .+. -+|+....++.|++|+|..|.+. .+|+.+
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~--~~~L~~l~~~~n-el~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~ 329 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPLRISR--ITSLVSLSAAYN-ELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNF 329 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHHHHhh--hhhHHHHHhhhh-hhh-hCCCcccccceeeeeeehhcccc-ccchHH
Confidence 4555667777888888887777888887765 367777777777 443 36666777888888888888776 344321
Q ss_pred --------------------------CCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300 137 --------------------------SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL 190 (269)
Q Consensus 137 --------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 190 (269)
..++.|+.|++.+|.+++..-..+.++++|+.|+|++|++.......+.++..|
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL 409 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh
Confidence 012335666777777776655566677777777777777764444556677777
Q ss_pred CEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 191 LKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 191 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+.|+||+|+++ .+|..+..++.|++|..-+|.+. ..| .+..++.|+.+|++.|.+....+|. .. ..|+|++||+
T Consensus 410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~-~~-p~p~LkyLdl 483 (1081)
T KOG0618|consen 410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE-AL-PSPNLKYLDL 483 (1081)
T ss_pred HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh-hC-CCcccceeec
Confidence 77777777776 46666666666666666666665 445 6666777777777777774444443 22 2266777664
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=9.8e-15 Score=137.89 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHhcccC--------CCCCCCCCCCCCCCCC
Q 036300 1 MERKEKEALYSTIQGFVG--------KWWNGSDLYPDPFGRT 34 (269)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~--------~~W~~~~~~~~~C~~~ 34 (269)
|.++|...+++..+.+.- .+|.+.+ ++|.-.
T Consensus 60 ~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~---~fc~~~ 98 (754)
T PRK15370 60 ASPEEIKSKFECLRMLAFPAYADNIQYSRGGAD---QYCILS 98 (754)
T ss_pred CCHHHHHHHHHHHHHhcCCchhhccccccCCCC---cccccC
Confidence 457888999998888864 3477764 899654
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=2.9e-14 Score=142.06 Aligned_cols=58 Identities=29% Similarity=0.433 Sum_probs=31.9
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (269)
++|+.|+|++| .....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus 657 ~~Le~L~L~~c-~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 657 TNLETLKLSDC-SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CcccEEEecCC-CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 56666666666 3445566666666666666666654333455433 3444444444444
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=6.3e-14 Score=139.70 Aligned_cols=168 Identities=22% Similarity=0.209 Sum_probs=84.8
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
++|+.|+|+++ .....+| .++.+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|++|+
T Consensus 634 ~~Lk~L~Ls~~-~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGS-KNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCC-CCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 45555555554 2233344 24455555555555554444555555555555555555543333444433 445555555
Q ss_pred ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhh------------------------------cCCCCCCEEEcc
Q 036300 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI------------------------------GNLHNVTFLDLR 220 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~------------------------------~~l~~L~~L~L~ 220 (269)
+++|.....+|.. ..+|+.|++++|.+. .+|..+ ...++|+.|+++
T Consensus 711 Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 711 LSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 5554332222221 234444555555443 223211 112356666676
Q ss_pred CCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 221 SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 221 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
+|.....+|..++++++|+.|++++|.. -+.+|.. . ++++|+.|+
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~-L~~LP~~-~-~L~sL~~L~ 831 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCIN-LETLPTG-I-NLESLESLD 831 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCC-cCeeCCC-C-CccccCEEE
Confidence 6665556777777777777777777643 2555542 2 455555554
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=1.7e-15 Score=130.75 Aligned_cols=155 Identities=26% Similarity=0.313 Sum_probs=84.4
Q ss_pred ccEEEccCCCCcee----ccCccccCC-CCCCEEEcccCCCCCC----CCCCCCCCCCCCEEEccCCcCCCC----Cccc
Q 036300 93 LDSLEFGSNPRLIG----TIPTSIDYL-KNLQSLVLLEKGLTGK----LPIEPSKLVNLRRLALAGNQINGQ----IPAS 159 (269)
Q Consensus 93 L~~L~l~~n~~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~ 159 (269)
|++|++++| .+.+ .+...+..+ ++|+.|++++|.+++. ++..+..+.+|++|++++|.+++. ++..
T Consensus 110 L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 110 LQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 666666666 4442 222334455 6666666666666532 222344555666666666666532 2223
Q ss_pred cCCCCCCCEEEccCCcCCchh----hhhhcCcccCCEEeCcCCcCCCcCchhhc-----CCCCCCEEEccCCccCC----
Q 036300 160 IGGLTKLLIFDLSRNNLSGSM----LLTLGKLARLLKLDLSYNNLQEKIPKEIG-----NLHNVTFLDLRSNNFLG---- 226 (269)
Q Consensus 160 l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~---- 226 (269)
+..+++|++|++++|.+++.. ...+..+++|++|++++|.+++.....+. ..+.|++|++++|.++.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 344456666666666665332 23344556667777766666542222221 12566677777666652
Q ss_pred cchhhhhcCCCCCeEEccCCCC
Q 036300 227 GLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~N~l 248 (269)
.+...+..+++|+++++++|.+
T Consensus 269 ~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 269 DLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHhcCCCccEEECCCCCC
Confidence 2334445556667777777766
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=1.6e-15 Score=130.97 Aligned_cols=178 Identities=22% Similarity=0.281 Sum_probs=130.0
Q ss_pred cCCccEEEccCCCCceeccCccccCCCC---CCEEEcccCCCCC----CCCCCCCCC-CCCCEEEccCCcCCCC----Cc
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKN---LQSLVLLEKGLTG----KLPIEPSKL-VNLRRLALAGNQINGQ----IP 157 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~----~p 157 (269)
+++|+.|++++| .+.+..+..+..+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++
T Consensus 80 ~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDN-ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCC-CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 479999999999 676555555555555 9999999999873 223345566 8999999999999843 33
Q ss_pred cccCCCCCCCEEEccCCcCCch----hhhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCcch
Q 036300 158 ASIGGLTKLLIFDLSRNNLSGS----MLLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~ 229 (269)
..+..+++|++|++++|.+++. ++..+...++|+.|++++|.+.+. ++..+..+++|++|++++|.+++...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 4566778999999999999843 344556667999999999998753 33456678899999999999986444
Q ss_pred hhhhc-----CCCCCeEEccCCCCCCC---CCCccccccCcCCceecC
Q 036300 230 GSIEE-----MVSLKEMVVSNNPIFGG---GLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 230 ~~~~~-----l~~L~~L~l~~N~l~~~---~~p~~~~~~l~~L~~L~l 269 (269)
..+.. .+.|++|++++|.++.. .+. ..+..+++|+++++
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~~~~~L~~l~l 285 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLA-EVLAEKESLLELDL 285 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHH-HHHhcCCCccEEEC
Confidence 33332 37999999999999211 122 24455677887764
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=5.7e-16 Score=143.47 Aligned_cols=145 Identities=28% Similarity=0.294 Sum_probs=107.5
Q ss_pred CCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc-ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEE
Q 036300 115 LKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA-SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKL 193 (269)
Q Consensus 115 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 193 (269)
++.|+.|++.+|.++......+.++++|++|+|++|++. .+|. .+.+++.|++|++++|+++ .+|..+.+++.|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 345777888888888777777888888888888888888 6664 5678888888888888888 778888888888888
Q ss_pred eCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCc
Q 036300 194 DLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265 (269)
Q Consensus 194 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~ 265 (269)
....|++. .+| .+..++.|+.+|++.|.++...-......++|++||++||.- ..+....+..++++.
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~--l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR--LVFDHKTLKVLKSLS 503 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc--cccchhhhHHhhhhh
Confidence 88888887 467 678888888888888888753322222237888888888874 333323344444443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=1.8e-14 Score=136.16 Aligned_cols=34 Identities=35% Similarity=0.434 Sum_probs=14.7
Q ss_pred CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 036300 117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQIN 153 (269)
Q Consensus 117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 153 (269)
+|+.|++++|.++ .+|..+. ++|+.|++++|+++
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 3444444444444 2333322 24444444444444
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=8e-14 Score=131.39 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=16.8
Q ss_pred CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 214 VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 214 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
|+.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 344444444444 3444455555555555555555
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.1e-13 Score=130.48 Aligned_cols=154 Identities=22% Similarity=0.202 Sum_probs=105.2
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCC---CC--------------CCCCCCEEEccCCcCC
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE---PS--------------KLVNLRRLALAGNQIN 153 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---~~--------------~l~~L~~L~L~~n~l~ 153 (269)
..|+.|++++| .+.. +|. .+++|+.|++++|.+++ +|.. +. ...+|++|++++|+++
T Consensus 282 ~~L~~L~Ls~N-~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 282 SGLCKLWIFGN-QLTS-LPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA 355 (788)
T ss_pred hhcCEEECcCC-cccc-ccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC
Confidence 44556666666 3432 333 13456666666666653 2221 10 1136888888888888
Q ss_pred CCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhh
Q 036300 154 GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIE 233 (269)
Q Consensus 154 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 233 (269)
.+|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.++. +|...
T Consensus 356 -~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~- 421 (788)
T PRK15387 356 -SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP- 421 (788)
T ss_pred -CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch-
Confidence 56653 346778888888887 45543 3579999999999985 5653 3679999999999984 56433
Q ss_pred cCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 234 EMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 234 ~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.+|+.|++++|++ ..+|. .+.++++|+.|+|
T Consensus 422 --~~L~~L~Ls~NqL--t~LP~-sl~~L~~L~~LdL 452 (788)
T PRK15387 422 --SGLLSLSVYRNQL--TRLPE-SLIHLSSETTVNL 452 (788)
T ss_pred --hhhhhhhhccCcc--cccCh-HHhhccCCCeEEC
Confidence 4678899999999 57886 6888999988875
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.44 E-value=1.5e-15 Score=134.31 Aligned_cols=171 Identities=29% Similarity=0.391 Sum_probs=147.4
Q ss_pred CCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCc
Q 036300 72 KPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151 (269)
Q Consensus 72 ~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 151 (269)
....+...++|.++-. +..|+.+.++.| .+ -.+|..+..+..|++|+|+.|++. .+|..+..|+ |+.|-+++|+
T Consensus 81 DlsrNR~~elp~~~~~--f~~Le~liLy~n-~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 81 DLSRNRFSELPEEACA--FVSLESLILYHN-CI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hccccccccCchHHHH--HHHHHHHHHHhc-cc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 3444778889988633 367899999888 44 458889999999999999999999 7888887775 8999999999
Q ss_pred CCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhh
Q 036300 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGS 231 (269)
Q Consensus 152 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 231 (269)
++ .+|+.++..+.|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++ .+|-.
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 99 88999998999999999999998 78888999999999999999998 478888854 5899999999998 88999
Q ss_pred hhcCCCCCeEEccCCCCCCCCCCc
Q 036300 232 IEEMVSLKEMVVSNNPIFGGGLNG 255 (269)
Q Consensus 232 ~~~l~~L~~L~l~~N~l~~~~~p~ 255 (269)
|.+|+.|++|-|.+|++ ..-|+
T Consensus 230 fr~m~~Lq~l~LenNPL--qSPPA 251 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPL--QSPPA 251 (722)
T ss_pred hhhhhhheeeeeccCCC--CCChH
Confidence 99999999999999999 44443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.41 E-value=1.4e-14 Score=128.21 Aligned_cols=179 Identities=24% Similarity=0.351 Sum_probs=132.4
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP 157 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 157 (269)
...+|...+.--+..-...|++.|+ ..++|..+..+..|+.+.+..|.+. .+|..+.++..|.+++|+.|+++ .+|
T Consensus 62 lk~fpr~a~~~~ltdt~~aDlsrNR--~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp 137 (722)
T KOG0532|consen 62 LKEFPRGAASYDLTDTVFADLSRNR--FSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLP 137 (722)
T ss_pred hhcCCCccccccccchhhhhccccc--cccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCC
Confidence 3444443332113455667788883 3457777777778888888888887 77888888888888888888888 777
Q ss_pred cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300 158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS 237 (269)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 237 (269)
..++.|+ |+.|.+++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.++.|++. .+|+.+.. -.
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-Lp 212 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LP 212 (722)
T ss_pred hhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cc
Confidence 7777775 788888888887 77777777788888888888887 46777888888888888888877 45556663 45
Q ss_pred CCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 238 LKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 238 L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
|..||++.|++ ..+|. .|.+|+.|++|-
T Consensus 213 Li~lDfScNki--s~iPv-~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 213 LIRLDFSCNKI--SYLPV-DFRKMRHLQVLQ 240 (722)
T ss_pred eeeeecccCce--eecch-hhhhhhhheeee
Confidence 77888888888 77776 677888887764
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=2.4e-12 Score=120.67 Aligned_cols=107 Identities=28% Similarity=0.490 Sum_probs=97.4
Q ss_pred CCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccC
Q 036300 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221 (269)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 221 (269)
++.|+|++|.+++.+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|++++.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhhhhcC-CCCCeEEccCCCC
Q 036300 222 NNFLGGLVGSIEEM-VSLKEMVVSNNPI 248 (269)
Q Consensus 222 N~l~~~~~~~~~~l-~~L~~L~l~~N~l 248 (269)
|.+++.+|..+... .++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 99999999888764 4677899999986
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=8.1e-13 Score=103.51 Aligned_cols=129 Identities=25% Similarity=0.251 Sum_probs=49.7
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCCC-CCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300 112 IDYLKNLQSLVLLEKGLTGKLPIEPS-KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL 190 (269)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 190 (269)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++...+.....+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3445578899999998883 3 3455 5788999999999988 554 47778889999999999884333222457889
Q ss_pred CEEeCcCCcCCCcC-chhhcCCCCCCEEEccCCccCCc---chhhhhcCCCCCeEEcc
Q 036300 191 LKLDLSYNNLQEKI-PKEIGNLHNVTFLDLRSNNFLGG---LVGSIEEMVSLKEMVVS 244 (269)
Q Consensus 191 ~~L~ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~ 244 (269)
+.|++++|++...- -..+..+++|+.|++.+|.++.. -...+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999999887521 24567788888999988888743 12356778888887653
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=2.5e-12 Score=100.81 Aligned_cols=122 Identities=30% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCccEEEccCCCCceeccCcccc-CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccc-CCCCCCCE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASI-GGLTKLLI 168 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~ 168 (269)
..+++|+|++| .+.. + +.++ .+.+|+.|++++|.++ .+. .+..++.|++|++++|+++ .+.+.+ ..+++|++
T Consensus 19 ~~~~~L~L~~n-~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGN-QIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccc-cccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 34566666666 3433 2 2344 4566666666666666 232 3555666666666666666 343333 34666666
Q ss_pred EEccCCcCCchh-hhhhcCcccCCEEeCcCCcCCCcC---chhhcCCCCCCEEE
Q 036300 169 FDLSRNNLSGSM-LLTLGKLARLLKLDLSYNNLQEKI---PKEIGNLHNVTFLD 218 (269)
Q Consensus 169 L~l~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~---p~~~~~l~~L~~L~ 218 (269)
|++++|++...- -..+..+++|+.|++.+|.+.... ...+..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 666666664311 134455666666666666665321 11234566666665
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=1.4e-12 Score=116.15 Aligned_cols=167 Identities=32% Similarity=0.456 Sum_probs=97.1
Q ss_pred CCccEEEccCCCCceeccCccccCCC-CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLK-NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
+.++.|++.+| .+ ..+++....++ +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......+.|+.|
T Consensus 116 ~~l~~L~l~~n-~i-~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNN-NI-TDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCc-cc-ccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 45667777666 33 33455555553 6777777777766 45555667777777777777776 555544466667777
Q ss_pred EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF 249 (269)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 249 (269)
++++|+++ .+|........|+++.+++|+.. ..+..+..+.++..+.+.+|++. ..+..++.++++++|++++|.+
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i- 267 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI- 267 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccc-
Confidence 77777766 44554444455666666666433 23444555555555555555554 2244555555566666666666
Q ss_pred CCCCCccccccCcCCceec
Q 036300 250 GGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 250 ~~~~p~~~~~~l~~L~~L~ 268 (269)
..++. +..+.+|+.|+
T Consensus 268 -~~i~~--~~~~~~l~~L~ 283 (394)
T COG4886 268 -SSISS--LGSLTNLRELD 283 (394)
T ss_pred -ccccc--ccccCccCEEe
Confidence 33432 44555555544
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=4.8e-12 Score=112.76 Aligned_cols=173 Identities=32% Similarity=0.504 Sum_probs=140.6
Q ss_pred cCCCCCCCcccCchhHHhhcC-CccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccC
Q 036300 71 FKPPLQSPIEIPSSNWQKLAN-SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG 149 (269)
Q Consensus 71 ~~~~~~~~~~lp~~~~~~l~~-~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 149 (269)
+....+.+..||... .+.. +|+.|++++| .+ ..+|..+..+++|+.|++++|++. .+|...+.++.|+.|++++
T Consensus 121 L~l~~n~i~~i~~~~--~~~~~nL~~L~l~~N-~i-~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 121 LDLDNNNITDIPPLI--GLLKSNLKELDLSDN-KI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred EecCCcccccCcccc--ccchhhccccccccc-ch-hhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccC
Confidence 333446677888765 2343 8999999999 44 446667899999999999999999 6777766899999999999
Q ss_pred CcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 229 (269)
|+++ .+|........|+++.+++|.+. ..+..+.++..+..+.+..|++.. ++..++.++++++|++++|.++.. +
T Consensus 196 N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i-~ 271 (394)
T COG4886 196 NKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI-S 271 (394)
T ss_pred Cccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccc-c
Confidence 9999 78876666677999999999654 566778888999999999999874 467788999999999999999844 3
Q ss_pred hhhhcCCCCCeEEccCCCCCCCCCC
Q 036300 230 GSIEEMVSLKEMVVSNNPIFGGGLN 254 (269)
Q Consensus 230 ~~~~~l~~L~~L~l~~N~l~~~~~p 254 (269)
. ++.+.+++.|++++|.+ ....+
T Consensus 272 ~-~~~~~~l~~L~~s~n~~-~~~~~ 294 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSL-SNALP 294 (394)
T ss_pred c-ccccCccCEEeccCccc-cccch
Confidence 3 88899999999999988 44333
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-12 Score=112.11 Aligned_cols=175 Identities=19% Similarity=0.203 Sum_probs=122.4
Q ss_pred CCCcccCchhHHhhcCCccEEEccCCCCceec--cCccccCCCCCCEEEcccCCCCCCCCCC-CCCCCCCCEEEccCCcC
Q 036300 76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGT--IPTSIDYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALAGNQI 152 (269)
Q Consensus 76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l 152 (269)
..++..+..-..+.+++++.|||+.| -+... +-....+||+|+.|+++.|++.-..... -..+++|+.|.++.|.+
T Consensus 131 ~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl 209 (505)
T KOG3207|consen 131 YRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL 209 (505)
T ss_pred ccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC
Confidence 33444443222334699999999999 55542 3445678999999999999987322222 23578899999999999
Q ss_pred CCC-CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc--hhhcCCCCCCEEEccCCccCCc-c
Q 036300 153 NGQ-IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP--KEIGNLHNVTFLDLRSNNFLGG-L 228 (269)
Q Consensus 153 ~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~-~ 228 (269)
+.. +...+..+|+|+.|++..|.....-......+..|+.|+|++|++-+ .+ ...+.++.|+.|+++.+.+... .
T Consensus 210 s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~ 288 (505)
T KOG3207|consen 210 SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAE 288 (505)
T ss_pred CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcC
Confidence 843 23345678999999999995322222334456789999999998874 33 4467889999999999988752 2
Q ss_pred hhh-----hhcCCCCCeEEccCCCCCCCCCC
Q 036300 229 VGS-----IEEMVSLKEMVVSNNPIFGGGLN 254 (269)
Q Consensus 229 ~~~-----~~~l~~L~~L~l~~N~l~~~~~p 254 (269)
|+. ...+++|++|++..|++ .+.+
T Consensus 289 ~d~~s~~kt~~f~kL~~L~i~~N~I--~~w~ 317 (505)
T KOG3207|consen 289 PDVESLDKTHTFPKLEYLNISENNI--RDWR 317 (505)
T ss_pred CCccchhhhcccccceeeecccCcc--cccc
Confidence 322 34578999999999999 4444
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=4.5e-12 Score=104.94 Aligned_cols=121 Identities=31% Similarity=0.278 Sum_probs=69.1
Q ss_pred CCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEc
Q 036300 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219 (269)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 219 (269)
+.|+++||++|.|+ .+.++..-+|.++.|++++|.+.. +. .+..+++|+.||+|+|.++. +..+-.++-+++.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 34666777777776 566666666777777777777652 22 25566677777777776653 3333334556666666
Q ss_pred cCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300 220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW 267 (269)
Q Consensus 220 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L 267 (269)
++|.+.. ...+..+-+|..||+++|+| ..--....++++|.|+.+
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETL 404 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccch-hhHHHhcccccccHHHHH
Confidence 6666532 22344555666666666666 222122245555555544
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=4.2e-12 Score=105.08 Aligned_cols=129 Identities=26% Similarity=0.343 Sum_probs=103.6
Q ss_pred CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEE
Q 036300 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKL 193 (269)
Q Consensus 114 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 193 (269)
..+.|+.+||++|.|+ .+.++..-+++++.|++++|.++ .+.. ++.+++|+.|++++|.++ .+..+-.++.++++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3457888999999988 77888888899999999999988 4443 788899999999999887 445555577888999
Q ss_pred eCcCCcCCCcCchhhcCCCCCCEEEccCCccCC-cchhhhhcCCCCCeEEccCCCC
Q 036300 194 DLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG-GLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 194 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l 248 (269)
.+++|.+.. + ..+.++-+|..||+++|+|.. ..-..+++++-|+.+.+.+|++
T Consensus 358 ~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 999998864 2 456777889999999999874 2234678889999999999998
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=3e-10 Score=73.54 Aligned_cols=61 Identities=34% Similarity=0.431 Sum_probs=38.1
Q ss_pred ccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 188 ARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 188 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
++|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3456666666666654445566666666666666666655556666666666666666653
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=4e-10 Score=72.91 Aligned_cols=57 Identities=37% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCC
Q 036300 118 LQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRN 174 (269)
Q Consensus 118 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 174 (269)
|++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444222233444444444444444443222233444444444444444
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.3e-10 Score=100.45 Aligned_cols=177 Identities=19% Similarity=0.162 Sum_probs=126.5
Q ss_pred CCccEEEccCCCCceeccC--ccccCCCCCCEEEcccCCCCCCCC--CCCCCCCCCCEEEccCCcCCCCCccc-cCCCCC
Q 036300 91 NSLDSLEFGSNPRLIGTIP--TSIDYLKNLQSLVLLEKGLTGKLP--IEPSKLVNLRRLALAGNQINGQIPAS-IGGLTK 165 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~ 165 (269)
..|+.+.|.++ .+. ..+ .-...|++++.|+|+.|-+....+ .-...+++|+.|+++.|.+.-..... -..++.
T Consensus 121 kkL~~IsLdn~-~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 121 KKLREISLDNY-RVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HhhhheeecCc-ccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 67889999887 333 233 245678999999999997764222 22467899999999999986322221 135678
Q ss_pred CCEEEccCCcCCch-hhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcc-hhhhhcCCCCCeEEc
Q 036300 166 LLIFDLSRNNLSGS-MLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL-VGSIEEMVSLKEMVV 243 (269)
Q Consensus 166 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l 243 (269)
|+.|.++.|.++.. +......+|+|+.|++.+|...........-+..|+.|||++|++.... -...+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 99999999999853 3344567899999999999532222233445678999999999987532 246788999999999
Q ss_pred cCCCCCCCCCCcc----ccccCcCCceecC
Q 036300 244 SNNPIFGGGLNGI----RWENLQNLEIWIF 269 (269)
Q Consensus 244 ~~N~l~~~~~p~~----~~~~l~~L~~L~l 269 (269)
+.+.+++-..|+. ....+++|++|++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i 308 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNI 308 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeec
Confidence 9999955555541 1367888888864
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.77 E-value=2.1e-09 Score=90.70 Aligned_cols=110 Identities=18% Similarity=0.268 Sum_probs=59.9
Q ss_pred CCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCCcCCch----hhhhhcCcccCCEEeCcCCcCCCcCchhh--
Q 036300 139 LVNLRRLALAGNQINGQ----IPASIGGLTKLLIFDLSRNNLSGS----MLLTLGKLARLLKLDLSYNNLQEKIPKEI-- 208 (269)
Q Consensus 139 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-- 208 (269)
.+.|+.+.+..|.|... +...+..+++|+.|++.+|.++.. +...+..++.|+.|++++|.+...-...+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 34455555555544311 123345566666666666666532 23345556666777777766654332222
Q ss_pred ---cCCCCCCEEEccCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300 209 ---GNLHNVTFLDLRSNNFLGG----LVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 209 ---~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l 248 (269)
...++|+.|.+.+|.|+.. +...+...+.|..|+|++|.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2356677777777766642 222344456677777777776
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=7.4e-09 Score=99.94 Aligned_cols=131 Identities=27% Similarity=0.329 Sum_probs=94.2
Q ss_pred CcccccccccCCCCCC--CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCC
Q 036300 62 SLVCSQCKIFKPPLQS--PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139 (269)
Q Consensus 62 ~~~~~~l~~~~~~~~~--~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 139 (269)
...|..+.++-...+. ...++..+|..+ +.|++|||++| .-.+.+|..++.|-+|++|+++++.+. .+|..+.++
T Consensus 541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m-~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~L 617 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLLEISGEFFRSL-PLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNL 617 (889)
T ss_pred CCCCCccceEEEeecchhhhhcCHHHHhhC-cceEEEECCCC-CccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHH
Confidence 3455555554444443 678888888776 88999999988 566778999999999999999999988 789899999
Q ss_pred CCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCC--chhhhhhcCcccCCEEeC
Q 036300 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS--GSMLLTLGKLARLLKLDL 195 (269)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l 195 (269)
.+|.+|++..+.....+|.....+++|++|.+...... ...-..+.++.+|+.+..
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99999999888765556666677889999888765422 222233444455554444
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=7.8e-09 Score=87.32 Aligned_cols=178 Identities=17% Similarity=0.155 Sum_probs=122.8
Q ss_pred cCCccEEEccCCCCceeccCc----cccCCCCCCEEEcccCCCCCCC-------------CCCCCCCCCCCEEEccCCcC
Q 036300 90 ANSLDSLEFGSNPRLIGTIPT----SIDYLKNLQSLVLLEKGLTGKL-------------PIEPSKLVNLRRLALAGNQI 152 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~-------------p~~~~~l~~L~~L~L~~n~l 152 (269)
++.|++|+||.| .+....++ -+..+..|++|+|.+|++...- -....+-++|+++...+|++
T Consensus 91 ~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 368999999999 66655444 3456788999999999886211 11234557899999999988
Q ss_pred CCC----CccccCCCCCCCEEEccCCcCCc----hhhhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEcc
Q 036300 153 NGQ----IPASIGGLTKLLIFDLSRNNLSG----SMLLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLR 220 (269)
Q Consensus 153 ~~~----~p~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~ 220 (269)
... +...|...+.|+.+.+..|.+.. .+...+..+++|+.||+.+|-|+.. +...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 632 23456777899999999998852 2345677889999999999988743 34556788899999999
Q ss_pred CCccCCcchh----hh-hcCCCCCeEEccCCCCCCCCCCc--cccccCcCCceec
Q 036300 221 SNNFLGGLVG----SI-EEMVSLKEMVVSNNPIFGGGLNG--IRWENLQNLEIWI 268 (269)
Q Consensus 221 ~N~l~~~~~~----~~-~~l~~L~~L~l~~N~l~~~~~p~--~~~~~l~~L~~L~ 268 (269)
.|.+...-.. .+ ...++|+.+.+.+|.++.+..-. ..+...|.|+.|+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 9988753322 22 23688999999999883332111 1233355555554
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=6.3e-09 Score=100.41 Aligned_cols=128 Identities=28% Similarity=0.339 Sum_probs=96.2
Q ss_pred CCccEEEccCCCC-ceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 91 NSLDSLEFGSNPR-LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 91 ~~L~~L~l~~n~~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
+.|++|-+..|.. +.......|..|+.|+.|||++|.-.+.+|..++++-+|++|+++++.++ .+|..+.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 5788888888821 33333345788999999999988877789999999999999999999998 899999999999999
Q ss_pred EccCCcCCchhhhhhcCcccCCEEeCcCCcCC--CcCchhhcCCCCCCEEEc
Q 036300 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ--EKIPKEIGNLHNVTFLDL 219 (269)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~L 219 (269)
++..+.....+|.....+.+|++|.+..-... ...-..+..+.+|+.+..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99988765556666667899999988765422 122233445555555554
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=1.1e-09 Score=100.36 Aligned_cols=101 Identities=29% Similarity=0.351 Sum_probs=47.5
Q ss_pred CCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccC
Q 036300 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221 (269)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 221 (269)
|.+.+.+.|.++ .+..++.-++.|+.|++++|+++... .+..++.|++||+++|++. .+|..-..-.+|+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 444455555554 44444555555555555555554221 4445555555555555554 2332111111255555555
Q ss_pred CccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 222 NNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 222 N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
|.++.. ..+.++.+|+.||+++|-+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhh
Confidence 554421 2344455555555555544
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.9e-10 Score=91.94 Aligned_cols=177 Identities=16% Similarity=0.121 Sum_probs=119.9
Q ss_pred CCccEEEccCCCCcee-ccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCc-CCCC-CccccCCCCCCC
Q 036300 91 NSLDSLEFGSNPRLIG-TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ-INGQ-IPASIGGLTKLL 167 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~ 167 (269)
..|++|||++. .++- .+...++++.+|+.|.+.++++.+.+-..+..-.+|+.|+++.+. ++.. +--.+.+|+.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 56899999987 5543 344467788999999999999988777778888999999999875 4411 112357888999
Q ss_pred EEEccCCcCCchhh-hhhcC-cccCCEEeCcCCcCC---CcCchhhcCCCCCCEEEccCCc-cCCcchhhhhcCCCCCeE
Q 036300 168 IFDLSRNNLSGSML-LTLGK-LARLLKLDLSYNNLQ---EKIPKEIGNLHNVTFLDLRSNN-FLGGLVGSIEEMVSLKEM 241 (269)
Q Consensus 168 ~L~l~~n~l~~~~~-~~~~~-l~~L~~L~ls~n~l~---~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 241 (269)
.|+++.|.+....- ..+.. -++|+.|+++++.-. ..+..-...+++|.+|||+.|. ++......|.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 99999997764322 11211 156777888876321 1222233577888888888763 555555667778888888
Q ss_pred EccCCCCCCCCCCccccccCcCCceecC
Q 036300 242 VVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 242 ~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.++.|.......- ..+...|.|.+|++
T Consensus 344 SlsRCY~i~p~~~-~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 344 SLSRCYDIIPETL-LELNSKPSLVYLDV 370 (419)
T ss_pred ehhhhcCCChHHe-eeeccCcceEEEEe
Confidence 8888864111111 25677788887763
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=4.5e-10 Score=102.76 Aligned_cols=125 Identities=25% Similarity=0.257 Sum_probs=83.9
Q ss_pred CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhh-hhcCcccCCEEeC
Q 036300 117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLL-TLGKLARLLKLDL 195 (269)
Q Consensus 117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l 195 (269)
+|...++++|.+. ....++.-++.|+.|+|++|+++ ... .+..+++|++||+++|.+. .+|. ....+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 3555566666666 55566667777888888888877 333 6677888888888888877 3343 222333 778888
Q ss_pred cCCcCCCcCchhhcCCCCCCEEEccCCccCC-cchhhhhcCCCCCeEEccCCCC
Q 036300 196 SYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG-GLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 196 s~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l 248 (269)
++|.++.. ..+.++.+|+.||++.|-+.+ .-...+..+..|+.|.|.||++
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88877632 446777788888888887765 2223455566777788888877
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=7.6e-09 Score=92.83 Aligned_cols=104 Identities=33% Similarity=0.380 Sum_probs=57.7
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
..|+.|++.+| .+.. +...+..+++|++|++++|.|+... .+..++.|+.|++.+|.++ .+. .+..++.|+.++
T Consensus 95 ~~l~~l~l~~n-~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDN-KIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLD 168 (414)
T ss_pred cceeeeecccc-chhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhccc
Confidence 56666666666 3433 2222555666666666666666322 2445555666666666665 332 234466666666
Q ss_pred ccCCcCCchhh-hhhcCcccCCEEeCcCCcCC
Q 036300 171 LSRNNLSGSML-LTLGKLARLLKLDLSYNNLQ 201 (269)
Q Consensus 171 l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~ 201 (269)
+++|.+....+ . ...+.+++.+++.+|.+.
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 66666653322 1 345556666666666554
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=6.3e-08 Score=80.49 Aligned_cols=181 Identities=20% Similarity=0.259 Sum_probs=120.8
Q ss_pred HHhhcCCccEEEccCCCCcee--ccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC-CccccCC
Q 036300 86 WQKLANSLDSLEFGSNPRLIG--TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ-IPASIGG 162 (269)
Q Consensus 86 ~~~l~~~L~~L~l~~n~~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~ 162 (269)
|...+..++.+||.+| .++. ++...+.+||.|+.|+++.|.+...+...-....+|++|-|.+..+... ....+..
T Consensus 66 ~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 4455689999999999 6764 4556678999999999999998854443324667899999999887644 3345577
Q ss_pred CCCCCEEEccCCcCCchh----------hh-------------------hhcCcccCCEEeCcCCcCCCcC-chhhcCCC
Q 036300 163 LTKLLIFDLSRNNLSGSM----------LL-------------------TLGKLARLLKLDLSYNNLQEKI-PKEIGNLH 212 (269)
Q Consensus 163 l~~L~~L~l~~n~l~~~~----------~~-------------------~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~ 212 (269)
+|.++.|+++.|.+.... |. .-.-++++..+-+..|.+...- -+.+..++
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 888999999888543110 00 0012355555556666554321 13345667
Q ss_pred CCCEEEccCCccCCc-chhhhhcCCCCCeEEccCCCCCCCCCCc-----cccccCcCCceec
Q 036300 213 NVTFLDLRSNNFLGG-LVGSIEEMVSLKEMVVSNNPIFGGGLNG-----IRWENLQNLEIWI 268 (269)
Q Consensus 213 ~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~p~-----~~~~~l~~L~~L~ 268 (269)
.+..|+|+.|+|-.. --+.+.+++.|+.|.+..|++ .+.+.. -.++.+++++.|+
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl-~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL-SDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcc-cccccCCcceEEEEeeccceEEec
Confidence 777888888888652 235677888999999999988 444332 1455666666553
No 46
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.52 E-value=1.4e-07 Score=56.23 Aligned_cols=36 Identities=31% Similarity=0.623 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcccC------CCCCCCCCCCCCCCCCCCCceEee
Q 036300 3 RKEKEALYSTIQGFVG------KWWNGSDLYPDPFGRTGLQGVSCD 42 (269)
Q Consensus 3 ~~~~~~l~~~~~~~~~------~~W~~~~~~~~~C~~~~~~gv~C~ 42 (269)
++|++||++||.++.. .+|+... ..+||.|. ||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~---GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWS---GVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCST---TEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeec---cEEeC
Confidence 6899999999999984 5798763 24999998 99996
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=1.7e-08 Score=74.75 Aligned_cols=133 Identities=22% Similarity=0.268 Sum_probs=95.1
Q ss_pred CCCCEEEcccCCCCCCCCCC---CCCCCCCCEEEccCCcCCCCCccccC-CCCCCCEEEccCCcCCchhhhhhcCcccCC
Q 036300 116 KNLQSLVLLEKGLTGKLPIE---PSKLVNLRRLALAGNQINGQIPASIG-GLTKLLIFDLSRNNLSGSMLLTLGKLARLL 191 (269)
Q Consensus 116 ~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 191 (269)
..+..++|+.|++. .+++. +.....|+.++|++|.+. .+|..|. .++.+++|++++|.++ .+|..+..++.|+
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 34667788888776 34443 445566777899999998 6776664 4568889999999998 6777788899999
Q ss_pred EEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCC
Q 036300 192 KLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLN 254 (269)
Q Consensus 192 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p 254 (269)
.++++.|.+. ..|+.+..+.++..|+..+|.+. .+|..+---...-..++.++++ .+.-+
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl-~~~~~ 163 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPL-GDETK 163 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcc-cccCc
Confidence 9999999887 46777777888888888888776 4444432223333445567777 55544
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=7.5e-09 Score=76.55 Aligned_cols=133 Identities=21% Similarity=0.247 Sum_probs=97.1
Q ss_pred CCccEEEccCCCCceeccCc---cccCCCCCCEEEcccCCCCCCCCCCCC-CCCCCCEEEccCCcCCCCCccccCCCCCC
Q 036300 91 NSLDSLEFGSNPRLIGTIPT---SIDYLKNLQSLVLLEKGLTGKLPIEPS-KLVNLRRLALAGNQINGQIPASIGGLTKL 166 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 166 (269)
..+..++|+.|. + ..+++ .+.....|+..+|++|.+. ..|..|. ..+.+++|++++|.++ .+|..+..++.|
T Consensus 27 kE~h~ldLssc~-l-m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aL 102 (177)
T KOG4579|consen 27 KELHFLDLSSCQ-L-MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPAL 102 (177)
T ss_pred HHhhhcccccch-h-hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHh
Confidence 456778888883 3 33444 3445566777799999998 5666554 4558899999999999 889889999999
Q ss_pred CEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300 167 LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 167 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 229 (269)
+.|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+..-...-..++.++.+.+..+
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 99999999998 66777777889999999999887 455444333333444455666665444
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=5.7e-08 Score=87.23 Aligned_cols=148 Identities=30% Similarity=0.343 Sum_probs=109.2
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
..++.+.++.| .+.. +-..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.|+.. . .+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n-~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i-~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQN-LIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL-E-GLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchh-hhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc-c-chhhccchhhhe
Confidence 66778888888 4443 3345778899999999999998 3443377889999999999999833 2 356777799999
Q ss_pred ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc-hhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP-KEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
+++|.++. ...+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.+
T Consensus 147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 99999873 2334557889999999999885433 1 46788899999999988632 2334445555568888887
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=3.2e-06 Score=50.48 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=22.1
Q ss_pred CCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
++|++|++++|+|+ .+|..++++++|++|++++|++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 35666677777666 3454566677777777777766
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=3.3e-06 Score=50.46 Aligned_cols=35 Identities=37% Similarity=0.615 Sum_probs=13.5
Q ss_pred CCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCC
Q 036300 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS 177 (269)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 177 (269)
|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444 33333344444444444444433
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=5.2e-06 Score=65.55 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcC-chhhcCCCCCCEEE
Q 036300 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI-PKEIGNLHNVTFLD 218 (269)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~ 218 (269)
.+...+||++|.+. .++ .|..++.|.+|.+++|+++...|.--..+++|+.|.+.+|++.... -..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45677888888776 333 4667778888888888887555544445577888888887765311 12345677777777
Q ss_pred ccCCccCCcc---hhhhhcCCCCCeEEccCCC
Q 036300 219 LRSNNFLGGL---VGSIEEMVSLKEMVVSNNP 247 (269)
Q Consensus 219 L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~ 247 (269)
+-+|.++..- ...+..+++|+.||.+.-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 7777765421 2345567777777766543
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.2e-07 Score=77.40 Aligned_cols=156 Identities=21% Similarity=0.142 Sum_probs=112.2
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccC-CCCCC-CCCCCCCCCCCCEEEccCCcCCCCCcc-ccCC-CCC
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEK-GLTGK-LPIEPSKLVNLRRLALAGNQINGQIPA-SIGG-LTK 165 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~-l~~ 165 (269)
+..|+.|.+.++ .+.+.+...+++-.+|+.|+++.+ +++.. ..--+.+++.|..|+++.|.++...-. .+.. -++
T Consensus 209 C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 209 CSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 688999999999 798888889999999999999986 33311 111257889999999999987633221 2222 256
Q ss_pred CCEEEccCCcCC---chhhhhhcCcccCCEEeCcCCc-CCCcCchhhcCCCCCCEEEccCCccCCcchh---hhhcCCCC
Q 036300 166 LLIFDLSRNNLS---GSMLLTLGKLARLLKLDLSYNN-LQEKIPKEIGNLHNVTFLDLRSNNFLGGLVG---SIEEMVSL 238 (269)
Q Consensus 166 L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L 238 (269)
|+.|+++++.-. ..+.--...+++|..|||++|. ++......|.+++.|++|.++.|.. .+|. .+...+.|
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcce
Confidence 888899887421 1333345678999999999884 4444445677889999999999863 4454 34667899
Q ss_pred CeEEccCCCC
Q 036300 239 KEMVVSNNPI 248 (269)
Q Consensus 239 ~~L~l~~N~l 248 (269)
.+|++-++-=
T Consensus 366 ~yLdv~g~vs 375 (419)
T KOG2120|consen 366 VYLDVFGCVS 375 (419)
T ss_pred EEEEeccccC
Confidence 9999877643
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=2.2e-06 Score=81.10 Aligned_cols=151 Identities=20% Similarity=0.321 Sum_probs=102.7
Q ss_pred CCccEEEccCCCCceeccCcccc-CCCCCCEEEcccCCCCCC-CCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEKGLTGK-LPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLI 168 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 168 (269)
.+|++||+++...+...-|..++ .+|.|+.|.+.+-.+... .-....++++|..||+++++++ .+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 67899999887444444444444 579999999988766522 2233467889999999999988 43 56788899999
Q ss_pred EEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcC--c----hhhcCCCCCCEEEccCCccCCcchhhh-hcCCCCCe
Q 036300 169 FDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKI--P----KEIGNLHNVTFLDLRSNNFLGGLVGSI-EEMVSLKE 240 (269)
Q Consensus 169 L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~--p----~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~ 240 (269)
|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+...+-+.+ ...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9888877753 22345668899999999987655321 1 112357889999999888776544433 34455655
Q ss_pred EEc
Q 036300 241 MVV 243 (269)
Q Consensus 241 L~l 243 (269)
+.+
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=1e-05 Score=63.88 Aligned_cols=127 Identities=21% Similarity=0.166 Sum_probs=90.6
Q ss_pred ccEEEccCCCCceeccCcccc-CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEc
Q 036300 93 LDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL 171 (269)
Q Consensus 93 L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 171 (269)
=+.+++++.+ +.. -..++ .+.+...++|++|.+. .+ ..|..++.|.+|.+.+|+|+..-|.--..+++|..|.+
T Consensus 21 e~e~~LR~lk-ip~--ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLK-IPV--IENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccc-ccc--hhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 4667777762 211 11222 2457788999999987 33 35778999999999999999555554456788999999
Q ss_pred cCCcCCchh-hhhhcCcccCCEEeCcCCcCCCcC---chhhcCCCCCCEEEccCCcc
Q 036300 172 SRNNLSGSM-LLTLGKLARLLKLDLSYNNLQEKI---PKEIGNLHNVTFLDLRSNNF 224 (269)
Q Consensus 172 ~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~---p~~~~~l~~L~~L~L~~N~l 224 (269)
.+|++.... -..+..+++|++|.+-+|.++..- --.+..+++|+.||.+.=..
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999986321 123567899999999999887421 12356889999999876543
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=2.7e-05 Score=68.79 Aligned_cols=112 Identities=19% Similarity=0.297 Sum_probs=56.3
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccC-CCCCCCCCCCCCCCCCCEEEccCCcCC--CCCccccCCCCCC
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEK-GLTGKLPIEPSKLVNLRRLALAGNQIN--GQIPASIGGLTKL 166 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L 166 (269)
+.+|++|.+++|.. ...+|..+. ++|++|++++| .+. .+|. +|+.|++..+... +.+|. +|
T Consensus 71 P~sLtsL~Lsnc~n-LtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPs------sL 134 (426)
T PRK15386 71 PNELTEITIENCNN-LTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPN------GL 134 (426)
T ss_pred CCCCcEEEccCCCC-cccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcc------hH
Confidence 45677777777633 344554332 46777777776 333 4443 3555666555432 12332 34
Q ss_pred CEEEccCCcCC--chhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCC
Q 036300 167 LIFDLSRNNLS--GSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSN 222 (269)
Q Consensus 167 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N 222 (269)
+.|.+.+++.. ...|.. -.++|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 135 k~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 135 TSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred hheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 55555432211 011111 1146777777776654 2343332 46777776655
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=4.4e-05 Score=67.43 Aligned_cols=134 Identities=14% Similarity=0.187 Sum_probs=86.6
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC-cCCCCCccccCCCCCCCE
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN-QINGQIPASIGGLTKLLI 168 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~ 168 (269)
++.++.|++++| .+.. +|. + .++|+.|.++++.--..+|..+ .++|+.|++++| .+. .+|. .|+.
T Consensus 51 ~~~l~~L~Is~c-~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDC-DIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred hcCCCEEEeCCC-CCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccce
Confidence 488999999999 5544 452 2 2469999999854434667655 368999999998 554 5664 4777
Q ss_pred EEccCCcCCchhhhhhcCc-ccCCEEeCcCCcCC--CcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccC
Q 036300 169 FDLSRNNLSGSMLLTLGKL-ARLLKLDLSYNNLQ--EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSN 245 (269)
Q Consensus 169 L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 245 (269)
|++..+.... +..+ ++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+. .+|++|.++.
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 7887765531 1222 35677777543311 111211 1258999999998865 3444444 6889999987
Q ss_pred CC
Q 036300 246 NP 247 (269)
Q Consensus 246 N~ 247 (269)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 74
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=2.6e-06 Score=80.62 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=101.9
Q ss_pred CCCCEEEcccCCCCC-CCCCCC-CCCCCCCEEEccCCcCCC-CCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCE
Q 036300 116 KNLQSLVLLEKGLTG-KLPIEP-SKLVNLRRLALAGNQING-QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLK 192 (269)
Q Consensus 116 ~~L~~L~L~~n~l~~-~~p~~~-~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 192 (269)
.+|++|++++...-. ..|..+ .-+|+|+.|.+++-.+.. .+-....++|+|..||+++.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 578999998865431 122223 347899999999877642 2334557889999999999999843 67888999999
Q ss_pred EeCcCCcCCC-cCchhhcCCCCCCEEEccCCccCCcc--h----hhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCc
Q 036300 193 LDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGL--V----GSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265 (269)
Q Consensus 193 L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~--~----~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~ 265 (269)
|.+.+=.+.. ..-..+..+++|+.||+|..+..... . +.-..+++|+.||.+++.+ ...+-...+..-|+|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi-~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI-NEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch-hHHHHHHHHHhCccHh
Confidence 9888766653 22245778999999999987755322 1 1224589999999999988 5554443444444444
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=1.4e-06 Score=72.63 Aligned_cols=176 Identities=17% Similarity=0.113 Sum_probs=109.9
Q ss_pred CCccEEEccCCCCceecc-Cccc-cCCCCCCEEEcccCCCCC--CCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCC
Q 036300 91 NSLDSLEFGSNPRLIGTI-PTSI-DYLKNLQSLVLLEKGLTG--KLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~-p~~l-~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 166 (269)
+.++.|.+.++ .+-..- -..| ...+.++.++|..|.++. ++..-+.+++.|++|+++.|++...+...-....+|
T Consensus 45 ra~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 45 RALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred cchhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 44556666665 332211 1122 245789999999999984 233345789999999999999874333221466789
Q ss_pred CEEEccCCcCCch-hhhhhcCcccCCEEeCcCCcCCCc--Cchhh---------------------------cCCCCCCE
Q 036300 167 LIFDLSRNNLSGS-MLLTLGKLARLLKLDLSYNNLQEK--IPKEI---------------------------GNLHNVTF 216 (269)
Q Consensus 167 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~--~p~~~---------------------------~~l~~L~~ 216 (269)
++|-+.+..+... ....+..+|.++.|+++.|.+... -.... .-++++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 9999988877643 334566788888998888843310 00000 12355666
Q ss_pred EEccCCccCCcch-hhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 217 LDLRSNNFLGGLV-GSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 217 L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
+.+..|.+...-. +....++.+.-|+|+.|+| ...-..+.+.+++.|..|+
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-dswasvD~Ln~f~~l~dlR 255 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-DSWASVDALNGFPQLVDLR 255 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhccccc-ccHHHHHHHcCCchhheee
Confidence 6666665543221 2344567777888999988 5544445677777777665
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.84 E-value=8.9e-05 Score=55.00 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=51.1
Q ss_pred cCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccc
Q 036300 81 IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASI 160 (269)
Q Consensus 81 lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 160 (269)
|+...|... .+|+.+.+... +...-...|..+++|+.+.+..+ +.......|.++++|+.+.+.+ .+...-...|
T Consensus 3 i~~~~F~~~-~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNC-SNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT--TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred ECHHHHhCC-CCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence 444444442 56777777533 33333445666667777777664 4433444566666677777754 3331223345
Q ss_pred CCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC
Q 036300 161 GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV 214 (269)
Q Consensus 161 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 214 (269)
..+++|+.+.+..+ +.......|.+. .|+.+.+.. .+.......|.++++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55666666666554 432333445554 566665554 2222233444444443
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.83 E-value=6e-06 Score=67.59 Aligned_cols=61 Identities=26% Similarity=0.407 Sum_probs=25.0
Q ss_pred CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC--cCCCCCccccCCCCCCCEEEccCCcC
Q 036300 114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN--QINGQIPASIGGLTKLLIFDLSRNNL 176 (269)
Q Consensus 114 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~l~~n~l 176 (269)
.+..|+.|.+.+.+++. -..+-.+++|+.|.++.| ++++.++-....+|+|+++++++|++
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33444444444444431 112333444444444444 33333333333334444444444444
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.79 E-value=7.5e-05 Score=55.41 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=32.4
Q ss_pred cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300 111 SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL 190 (269)
Q Consensus 111 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 190 (269)
.|..+++|+.+.+.. .+.......|.++++|+.+.+.++ +...-...|..+++|+.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455555666666553 344333444555555666665553 3312223445554555555543 2221222334444444
Q ss_pred CEEeCcC
Q 036300 191 LKLDLSY 197 (269)
Q Consensus 191 ~~L~ls~ 197 (269)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 4444433
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.78 E-value=3.7e-05 Score=63.56 Aligned_cols=157 Identities=16% Similarity=0.111 Sum_probs=82.0
Q ss_pred cCCccEEEccCCCCceeccCcc----ccCCCCCCEEEcccCCCCCCCCCCC-------------CCCCCCCEEEccCCcC
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTS----IDYLKNLQSLVLLEKGLTGKLPIEP-------------SKLVNLRRLALAGNQI 152 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~~-------------~~l~~L~~L~L~~n~l 152 (269)
|++|+.++||.| .+....|+. +++-+.|.+|.+++|++.-....-+ .+-+.|+++....|++
T Consensus 91 cp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 91 CPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred CCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 467777777777 565555543 4455667777777776652111111 2345566666666665
Q ss_pred CCCCcc-----ccCCCCCCCEEEccCCcCCchh-----hhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEE
Q 036300 153 NGQIPA-----SIGGLTKLLIFDLSRNNLSGSM-----LLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLD 218 (269)
Q Consensus 153 ~~~~p~-----~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ 218 (269)
. ..+. .+..-..|+++.+..|.|.-.. -..+..+.+|+.||+.+|-++-. +...+..++.|+.|.
T Consensus 170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 170 E-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred c-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 4 2221 1222245666666666654211 11223446666666666665532 223344556666666
Q ss_pred ccCCccCCcchh----hh--hcCCCCCeEEccCCCC
Q 036300 219 LRSNNFLGGLVG----SI--EEMVSLKEMVVSNNPI 248 (269)
Q Consensus 219 L~~N~l~~~~~~----~~--~~l~~L~~L~l~~N~l 248 (269)
+..|-++..-.. .| ...++|..|-..+|.+
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 666655432111 11 1235566666666655
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.77 E-value=1.9e-05 Score=65.21 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=105.6
Q ss_pred CCccEEEccCCCCcee----ccC-------ccccCCCCCCEEEcccCCCCCCCCCC----CCCCCCCCEEEccCCcCCCC
Q 036300 91 NSLDSLEFGSNPRLIG----TIP-------TSIDYLKNLQSLVLLEKGLTGKLPIE----PSKLVNLRRLALAGNQINGQ 155 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~----~~p-------~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~ 155 (269)
++|+..+++.- ++| .++ +.+.+||+|+..+||.|.+....|.. ++.-+.|++|.+++|.+.-.
T Consensus 58 ~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 58 RNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred cceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 56666666653 232 222 34667899999999999888666654 45667899999999987511
Q ss_pred ----Cc---------cccCCCCCCCEEEccCCcCCchh----hhhhcCcccCCEEeCcCCcCCCcC-----chhhcCCCC
Q 036300 156 ----IP---------ASIGGLTKLLIFDLSRNNLSGSM----LLTLGKLARLLKLDLSYNNLQEKI-----PKEIGNLHN 213 (269)
Q Consensus 156 ----~p---------~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~~~-----p~~~~~l~~ 213 (269)
+. ....+-|.|+++....|++..-. ...+.....|+++.+..|.+.-.. -..+..+.+
T Consensus 136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~ 215 (388)
T COG5238 136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHS 215 (388)
T ss_pred chhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCc
Confidence 11 11245578999999999885221 122333457889999999876321 123456789
Q ss_pred CCEEEccCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300 214 VTFLDLRSNNFLGG----LVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 214 L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l 248 (269)
|+.||++.|-++.. ....+..++.|+.|.+..|-+
T Consensus 216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred ceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 99999999988753 334556678899999999888
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.57 E-value=4.7e-05 Score=62.43 Aligned_cols=110 Identities=24% Similarity=0.249 Sum_probs=74.7
Q ss_pred CCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCC--cCCchhhhhhcCcccCCEEeCcCCcCCC--cCchh
Q 036300 132 LPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRN--NLSGSMLLTLGKLARLLKLDLSYNNLQE--KIPKE 207 (269)
Q Consensus 132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~ 207 (269)
+..-.-.+..|+.+.+.+..++ .+ ..+-.+++|++|.++.| ++.+.++.....+++|+++++++|++.. .+ ..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RP 111 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-ch
Confidence 3333445566777777777776 22 24567789999999999 5665555555667999999999998863 11 22
Q ss_pred hcCCCCCCEEEccCCccCCc---chhhhhcCCCCCeEEcc
Q 036300 208 IGNLHNVTFLDLRSNNFLGG---LVGSIEEMVSLKEMVVS 244 (269)
Q Consensus 208 ~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~ 244 (269)
+..+.+|..|++.+|..+.. --..|.-+++|++||-.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 45677788899988876652 12355667788777543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=2.3e-05 Score=65.01 Aligned_cols=82 Identities=24% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc-hhhcCCCCCCEE
Q 036300 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP-KEIGNLHNVTFL 217 (269)
Q Consensus 139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L 217 (269)
+.+.+.|+..+|.+++. .....++.|++|.|+-|+++..-| +..+.+|++|+|..|.|.+.-. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34445555555555521 122445555666666665553222 3345555555555555543111 223455555555
Q ss_pred EccCCcc
Q 036300 218 DLRSNNF 224 (269)
Q Consensus 218 ~L~~N~l 224 (269)
.|..|.=
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 5555543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=4.4e-05 Score=63.33 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=63.9
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc--ccCCCCCCCE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA--SIGGLTKLLI 168 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~ 168 (269)
.+++.|++-+| .+.+. ....+|+.|+.|.|+-|.|+..- .+..|++|++|+|..|.|. .+.+ -+.++|+|+.
T Consensus 19 ~~vkKLNcwg~-~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCC-CccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 45677777777 55543 23457788888888888877433 3667788888888888777 3333 3467778888
Q ss_pred EEccCCcCCchhhh-----hhcCcccCCEEe
Q 036300 169 FDLSRNNLSGSMLL-----TLGKLARLLKLD 194 (269)
Q Consensus 169 L~l~~n~l~~~~~~-----~~~~l~~L~~L~ 194 (269)
|.|..|...+..+. .+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88877766554432 344556666654
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.93 E-value=0.00083 Score=61.08 Aligned_cols=174 Identities=19% Similarity=0.105 Sum_probs=102.3
Q ss_pred cCCccEEEccCCCCceec-cCccccCCCCCCEEEcccC-CCCCCCC----CCCCCCCCCCEEEccCCc-CCCCCccccC-
Q 036300 90 ANSLDSLEFGSNPRLIGT-IPTSIDYLKNLQSLVLLEK-GLTGKLP----IEPSKLVNLRRLALAGNQ-INGQIPASIG- 161 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~p~~l~- 161 (269)
.+.|+.|.+..+..+... +-+....+++|+.|+++++ ......+ .....+.+|+.++++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 477888888887433331 2345567788999998873 2211111 234556888899998887 5543333333
Q ss_pred CCCCCCEEEccCCc-CCchh-hhhhcCcccCCEEeCcCCcCCCc--CchhhcCCCCCCEEEccCCc----cC--------
Q 036300 162 GLTKLLIFDLSRNN-LSGSM-LLTLGKLARLLKLDLSYNNLQEK--IPKEIGNLHNVTFLDLRSNN----FL-------- 225 (269)
Q Consensus 162 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~L~~N~----l~-------- 225 (269)
.+++|++|.+.++. +++.. ......++.|++|+++++..... +.....++++++.|.+.... ++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 37889999877776 55432 23345678899999998865321 22223345555554433222 11
Q ss_pred -----CcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCC
Q 036300 226 -----GGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNL 264 (269)
Q Consensus 226 -----~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L 264 (269)
......+..+++++.+.+..+.. ....-...+..++.|
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGI-SDLGLELSLRGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhc-cCcchHHHhcCCccc
Confidence 11122445678888888888875 333212366677776
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.0042 Score=30.93 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=8.3
Q ss_pred CCEEEccCCccCCcchhhh
Q 036300 214 VTFLDLRSNNFLGGLVGSI 232 (269)
Q Consensus 214 L~~L~L~~N~l~~~~~~~~ 232 (269)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555544 344333
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.78 E-value=0.0039 Score=31.05 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=4.3
Q ss_pred CEEEccCCcCC
Q 036300 143 RRLALAGNQIN 153 (269)
Q Consensus 143 ~~L~L~~n~l~ 153 (269)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33334433333
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.14 E-value=0.0074 Score=54.86 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=6.0
Q ss_pred CCCCCeEEccCCC
Q 036300 235 MVSLKEMVVSNNP 247 (269)
Q Consensus 235 l~~L~~L~l~~N~ 247 (269)
++.|++|+++++.
T Consensus 294 ~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 294 CPSLRELDLSGCH 306 (482)
T ss_pred cCcccEEeeecCc
Confidence 4444444444443
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.02 E-value=0.00045 Score=56.06 Aligned_cols=94 Identities=20% Similarity=0.225 Sum_probs=75.9
Q ss_pred cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300 79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA 158 (269)
Q Consensus 79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 158 (269)
.+||......+ ...+.||++.| .+.. .-..|+-++.|..|+++.|++. .+|..++....++.+++..|..+ ..|.
T Consensus 31 s~~~v~ei~~~-kr~tvld~~s~-r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~ 105 (326)
T KOG0473|consen 31 SEIPVREIASF-KRVTVLDLSSN-RLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK 105 (326)
T ss_pred cccchhhhhcc-ceeeeehhhhh-HHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence 44554333444 77899999998 4443 4456778888999999999988 78889998899999999999998 8899
Q ss_pred ccCCCCCCCEEEccCCcCC
Q 036300 159 SIGGLTKLLIFDLSRNNLS 177 (269)
Q Consensus 159 ~l~~l~~L~~L~l~~n~l~ 177 (269)
++...+.+++++...+.+.
T Consensus 106 s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccccCCcchhhhccCcch
Confidence 9999999999999998865
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.88 E-value=0.00038 Score=63.41 Aligned_cols=132 Identities=28% Similarity=0.317 Sum_probs=64.1
Q ss_pred CCCEEEcccCCCCCC----CCCCCCCCCCCCEEEccCCcCCC----CCcccc----CCCCCCCEEEccCCcCCchh----
Q 036300 117 NLQSLVLLEKGLTGK----LPIEPSKLVNLRRLALAGNQING----QIPASI----GGLTKLLIFDLSRNNLSGSM---- 180 (269)
Q Consensus 117 ~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l----~~l~~L~~L~l~~n~l~~~~---- 180 (269)
.+++|.+..|.+++. +...+.....++.++++.|.+.. .++..+ ....++++|.+++|.++...
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 344444444444432 12223334556666666665521 111222 23455666666666655211
Q ss_pred hhhhcCccc-CCEEeCcCCcCCCc----CchhhcCC-CCCCEEEccCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300 181 LLTLGKLAR-LLKLDLSYNNLQEK----IPKEIGNL-HNVTFLDLRSNNFLGG----LVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 181 ~~~~~~l~~-L~~L~ls~n~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l 248 (269)
...+...+. +..+++..|.+.+. ..+.+... ..++.++++.|.|+.. ..+.+..++.++++.++.|++
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 122333333 45566666665532 12223333 4566777777776652 333445556666777777766
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.84 E-value=0.041 Score=25.41 Aligned_cols=9 Identities=44% Similarity=0.704 Sum_probs=3.0
Q ss_pred CEEEccCCc
Q 036300 143 RRLALAGNQ 151 (269)
Q Consensus 143 ~~L~L~~n~ 151 (269)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.59 E-value=0.0012 Score=53.61 Aligned_cols=85 Identities=25% Similarity=0.168 Sum_probs=43.5
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC
Q 036300 112 IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL 191 (269)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 191 (269)
+......+.||++.|++. .+...|+-++.|..|+++.|++. .+|..+.....+..+++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344455555555555554 33334444555555555555555 45555555545555555555544 4455555555555
Q ss_pred EEeCcCCc
Q 036300 192 KLDLSYNN 199 (269)
Q Consensus 192 ~L~ls~n~ 199 (269)
++++..|.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55555544
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.40 E-value=0.028 Score=49.56 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=70.8
Q ss_pred CCCCCEEEccCCcCCCCCc-ccc-CCCCCCCEEEccCCc-CCchhhhhh-cCcccCCEEeCcCCcCCC--cCchhhcCCC
Q 036300 139 LVNLRRLALAGNQINGQIP-ASI-GGLTKLLIFDLSRNN-LSGSMLLTL-GKLARLLKLDLSYNNLQE--KIPKEIGNLH 212 (269)
Q Consensus 139 l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~ls~n~l~~--~~p~~~~~l~ 212 (269)
+..|++++.+++...+..+ ..+ .+.++|+++.++.++ ++..-...+ .+++.|+.+++..+.... .+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4455666666554321211 122 456777888777775 332211222 345667777777664321 1222234677
Q ss_pred CCCEEEccCCcc-CCcc----hhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 213 NVTFLDLRSNNF-LGGL----VGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 213 ~L~~L~L~~N~l-~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
.|+.+.++++.. ++.- ...-..+..|..+.+++++.+.+.... .+..+++|+.++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~ 432 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIE 432 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceee
Confidence 888888887753 3220 112234567778888888774554443 666777777654
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=0.042 Score=43.85 Aligned_cols=79 Identities=19% Similarity=0.144 Sum_probs=32.7
Q ss_pred CCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCch-hhhhhc-CcccCCEEeCcCC-cCCCcCchhhcCCCCCCEEE
Q 036300 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGS-MLLTLG-KLARLLKLDLSYN-NLQEKIPKEIGNLHNVTFLD 218 (269)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~-~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L~ 218 (269)
++.+|-++..|...--+.+.+++.++.|.+.+|.--+. --..++ -.++|+.|++++| ++++.--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44555555554433333444455555555554432111 001111 1244555555544 34333333344444444444
Q ss_pred cc
Q 036300 219 LR 220 (269)
Q Consensus 219 L~ 220 (269)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.81 E-value=0.051 Score=47.96 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=85.5
Q ss_pred CCCCCCCEEEccCCc-CCCCCcccc-CCCCCCCEEEccCCcCCc--hhhhhhcCcccCCEEeCcCCcCCCcC-----chh
Q 036300 137 SKLVNLRRLALAGNQ-INGQIPASI-GGLTKLLIFDLSRNNLSG--SMLLTLGKLARLLKLDLSYNNLQEKI-----PKE 207 (269)
Q Consensus 137 ~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~-----p~~ 207 (269)
.+..+|+++-+..++ |+..--..+ .+++.|+.+++..+.... .+...-.+++.|+.+.++.+...... ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 567899999999987 332211222 567889999998886532 23333357789999999987543221 122
Q ss_pred hcCCCCCCEEEccCCccC-CcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300 208 IGNLHNVTFLDLRSNNFL-GGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW 267 (269)
Q Consensus 208 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L 267 (269)
-.....|+.+-|+++..+ ....+.+..+++|+.+++-+++-.+.+--.....++|+++..
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 245677899999998754 355567788899999999888652333222244567776643
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.78 E-value=0.16 Score=26.11 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=9.8
Q ss_pred CCCCeEEccCCCCCCCCCCc
Q 036300 236 VSLKEMVVSNNPIFGGGLNG 255 (269)
Q Consensus 236 ~~L~~L~l~~N~l~~~~~p~ 255 (269)
++|++|++++|++ ..+|.
T Consensus 2 ~~L~~L~L~~N~l--~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQL--SSLPP 19 (26)
T ss_pred CCCCEEECCCCcC--CcCCH
Confidence 4555555666655 44444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.78 E-value=0.16 Score=26.11 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=9.8
Q ss_pred CCCCeEEccCCCCCCCCCCc
Q 036300 236 VSLKEMVVSNNPIFGGGLNG 255 (269)
Q Consensus 236 ~~L~~L~l~~N~l~~~~~p~ 255 (269)
++|++|++++|++ ..+|.
T Consensus 2 ~~L~~L~L~~N~l--~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQL--SSLPP 19 (26)
T ss_pred CCCCEEECCCCcC--CcCCH
Confidence 4555555666655 44444
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.97 E-value=0.24 Score=25.37 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=9.4
Q ss_pred CCCCEEEccCCccCCc
Q 036300 212 HNVTFLDLRSNNFLGG 227 (269)
Q Consensus 212 ~~L~~L~L~~N~l~~~ 227 (269)
++|++|+|++|.++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666533
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.97 E-value=0.24 Score=25.37 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=9.4
Q ss_pred CCCCEEEccCCccCCc
Q 036300 212 HNVTFLDLRSNNFLGG 227 (269)
Q Consensus 212 ~~L~~L~L~~N~l~~~ 227 (269)
++|++|+|++|.++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666533
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.76 E-value=0.09 Score=26.49 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=8.4
Q ss_pred CCCCEEEccCCccCCcch
Q 036300 212 HNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~ 229 (269)
++|++|+|++|+|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455566666665554333
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.56 E-value=0.058 Score=43.04 Aligned_cols=81 Identities=20% Similarity=0.158 Sum_probs=40.9
Q ss_pred CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC-cccc-CCCCCCCEEEccCC-cCCchhhhhhcCcccCCEE
Q 036300 117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQI-PASI-GGLTKLLIFDLSRN-NLSGSMLLTLGKLARLLKL 193 (269)
Q Consensus 117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 193 (269)
.++.++-+++.|..+--+.+.+++.++.|.+.+|.--+.. -+.+ .-.++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3555666666655544455556666666666655422110 0111 12355666666655 3444444455555666655
Q ss_pred eCcC
Q 036300 194 DLSY 197 (269)
Q Consensus 194 ~ls~ 197 (269)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.84 E-value=0.0063 Score=55.53 Aligned_cols=155 Identities=25% Similarity=0.269 Sum_probs=99.2
Q ss_pred ccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCCC----CCCCCC----CCCCCCCEEEccCCcCCCC----C
Q 036300 93 LDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLTG----KLPIEP----SKLVNLRRLALAGNQINGQ----I 156 (269)
Q Consensus 93 L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~----~~l~~L~~L~L~~n~l~~~----~ 156 (269)
+++|++..| .+++. +.+.+.....++.++++.|.+.. .++..+ ....++++|.+.+|.++.. +
T Consensus 146 l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 146 LQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 455666666 45443 44456667889999999998852 122233 3477899999999988722 1
Q ss_pred ccccCCCCC-CCEEEccCCcCCch----hhhhhcCc-ccCCEEeCcCCcCCCcC----chhhcCCCCCCEEEccCCccCC
Q 036300 157 PASIGGLTK-LLIFDLSRNNLSGS----MLLTLGKL-ARLLKLDLSYNNLQEKI----PKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 157 p~~l~~l~~-L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
...+...+. +..|++..|.+.+. ....+..+ ..++.++++.|.+...- .+.+..++.++++.++.|.+..
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 223444555 66789999988754 23345555 67899999999998643 3445677789999999998875
Q ss_pred cc----hhhhhcCCCCCeEEccCCCC
Q 036300 227 GL----VGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 227 ~~----~~~~~~l~~L~~L~l~~N~l 248 (269)
.. -........+..+-+.++..
T Consensus 305 ~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 305 YGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred HHHHHHHHHhhhcccchhhhccccCc
Confidence 22 12223334444555554443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.16 E-value=1.9 Score=22.30 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=7.5
Q ss_pred CCCCEEEccCCccC
Q 036300 212 HNVTFLDLRSNNFL 225 (269)
Q Consensus 212 ~~L~~L~L~~N~l~ 225 (269)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.70 E-value=1.4 Score=40.55 Aligned_cols=63 Identities=24% Similarity=0.227 Sum_probs=30.9
Q ss_pred CCCCCCEEEccCCcCCch--hhhhhcCcccCCEEeCcCC--cCCCcCchhhc--CCCCCCEEEccCCccCC
Q 036300 162 GLTKLLIFDLSRNNLSGS--MLLTLGKLARLLKLDLSYN--NLQEKIPKEIG--NLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls~n--~l~~~~p~~~~--~l~~L~~L~L~~N~l~~ 226 (269)
+.+.+..+.+++|++... +..--...|+|..|+|++| .+.. ..++. +...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 445566666666665421 1112223466666666666 3321 11222 22345666666666643
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.49 E-value=1.7 Score=22.49 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=6.3
Q ss_pred CCCEEEcccCCCC
Q 036300 117 NLQSLVLLEKGLT 129 (269)
Q Consensus 117 ~L~~L~L~~n~l~ 129 (269)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555444
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.37 E-value=3.4 Score=21.58 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=9.5
Q ss_pred CCCCEEEccCCccCC
Q 036300 212 HNVTFLDLRSNNFLG 226 (269)
Q Consensus 212 ~~L~~L~L~~N~l~~ 226 (269)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456677777776653
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.10 E-value=4.2 Score=37.54 Aligned_cols=62 Identities=24% Similarity=0.370 Sum_probs=37.5
Q ss_pred cCcccCCEEeCcCCcCCCc--CchhhcCCCCCCEEEccCC--ccCCcchhhhhc--CCCCCeEEccCCCC
Q 036300 185 GKLARLLKLDLSYNNLQEK--IPKEIGNLHNVTFLDLRSN--NFLGGLVGSIEE--MVSLKEMVVSNNPI 248 (269)
Q Consensus 185 ~~l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~--l~~L~~L~l~~N~l 248 (269)
.+.+.+..+.|++|++... +...-...++|..|+|++| .+.. ..++.. ...|++|-+.||++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcc
Confidence 4567777778888876531 2222345677888888888 3332 122222 24567788888887
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.48 E-value=5.3 Score=20.26 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=8.8
Q ss_pred CCccEEEccCCCCce
Q 036300 91 NSLDSLEFGSNPRLI 105 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~ 105 (269)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666664343
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.82 E-value=37 Score=37.90 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=24.3
Q ss_pred EccCCcCCchhhhhhcCcccCCEEeCcCCcCC
Q 036300 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201 (269)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 201 (269)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788887665667777888888888888765
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.81 E-value=1.2e+02 Score=17.47 Aligned_cols=9 Identities=67% Similarity=0.914 Sum_probs=6.0
Q ss_pred CCccEEEcc
Q 036300 91 NSLDSLEFG 99 (269)
Q Consensus 91 ~~L~~L~l~ 99 (269)
+++++|.+.
T Consensus 12 ~~l~~L~~g 20 (44)
T PF05725_consen 12 SSLKSLIFG 20 (44)
T ss_pred CCCeEEEEC
Confidence 566777773
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.33 E-value=54 Score=36.73 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=25.4
Q ss_pred EcccCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 036300 122 VLLEKGLTGKLPIEPSKLVNLRRLALAGNQIN 153 (269)
Q Consensus 122 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 153 (269)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888555557788888999999988775
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.64 E-value=85 Score=28.91 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=10.4
Q ss_pred CCCeEEccCCCCCCCCC
Q 036300 237 SLKEMVVSNNPIFGGGL 253 (269)
Q Consensus 237 ~L~~L~l~~N~l~~~~~ 253 (269)
.+++|.+..|.+ .++.
T Consensus 355 R~q~l~~rdnnl-dgeg 370 (553)
T KOG4242|consen 355 RVQVLLQRDNNL-DGEG 370 (553)
T ss_pred eeeEeecccccc-cccc
Confidence 467777777776 5544
Done!