Query 036300
Match_columns 269
No_of_seqs 353 out of 2850
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-37 1.3E-41 264.4 18.1 255 2-269 4-275 (313)
2 4eco_A Uncharacterized protein 100.0 1E-33 3.4E-38 264.9 15.6 221 3-248 29-365 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2.9E-33 1E-37 268.1 19.0 238 3-269 268-626 (876)
4 4fcg_A Uncharacterized protein 100.0 5E-33 1.7E-37 240.3 14.8 256 3-269 26-308 (328)
5 3rgz_A Protein brassinosteroid 100.0 1.3E-32 4.6E-37 262.4 17.5 246 3-268 11-275 (768)
6 2o6q_A Variable lymphocyte rec 100.0 2.6E-28 8.8E-33 205.1 19.0 210 29-269 3-212 (270)
7 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-27 4.4E-32 202.2 20.1 200 66-269 32-232 (285)
8 3rgz_A Protein brassinosteroid 99.9 2.7E-27 9.1E-32 225.8 17.8 201 64-269 440-711 (768)
9 2z66_A Variable lymphocyte rec 99.9 2.1E-27 7E-32 202.8 12.9 232 29-269 5-255 (306)
10 4fcg_A Uncharacterized protein 99.9 6.2E-27 2.1E-31 202.2 14.5 194 67-269 82-284 (328)
11 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-27 4.1E-32 205.3 9.9 204 58-269 93-298 (313)
12 3m19_A Variable lymphocyte rec 99.9 3.6E-26 1.2E-30 189.9 16.8 169 78-252 26-194 (251)
13 2z80_A TOLL-like receptor 2, v 99.9 4E-26 1.4E-30 198.8 14.4 198 67-269 77-308 (353)
14 3zyi_A Leucine-rich repeat-con 99.9 2.5E-25 8.6E-30 200.0 19.9 196 68-269 77-297 (452)
15 3v47_A TOLL-like receptor 5B a 99.9 7.1E-26 2.4E-30 203.2 15.6 129 49-179 31-169 (455)
16 2z62_A TOLL-like receptor 4, v 99.9 1.2E-25 4E-30 189.2 15.9 198 67-269 29-231 (276)
17 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-25 1.1E-29 187.3 18.6 185 78-269 23-208 (285)
18 3zyj_A Leucine-rich repeat-con 99.9 4.2E-25 1.4E-29 197.8 19.1 196 68-269 90-286 (440)
19 3o6n_A APL1; leucine-rich repe 99.9 2.8E-25 9.5E-30 195.9 17.6 132 67-201 46-178 (390)
20 3oja_B Anopheles plasmodium-re 99.9 2.9E-25 1E-29 206.2 18.6 197 67-268 52-307 (597)
21 2ft3_A Biglycan; proteoglycan, 99.9 6.8E-25 2.3E-29 189.4 19.5 196 66-269 54-271 (332)
22 1xku_A Decorin; proteoglycan, 99.9 1.4E-24 4.9E-29 187.1 20.6 195 67-269 53-270 (330)
23 2xwt_C Thyrotropin receptor; s 99.9 3.2E-25 1.1E-29 182.8 15.3 207 50-269 18-233 (239)
24 1p9a_G Platelet glycoprotein I 99.9 1.1E-24 3.8E-29 184.9 18.6 171 91-268 31-201 (290)
25 2o6q_A Variable lymphocyte rec 99.9 1.6E-24 5.6E-29 181.8 18.9 199 37-248 19-217 (270)
26 2id5_A Lingo-1, leucine rich r 99.9 9.8E-25 3.3E-29 197.2 17.3 199 67-269 33-255 (477)
27 2z66_A Variable lymphocyte rec 99.9 1.1E-24 3.9E-29 185.8 16.5 199 66-269 28-230 (306)
28 3zyj_A Leucine-rich repeat-con 99.9 2.1E-24 7.2E-29 193.3 18.3 207 55-269 55-262 (440)
29 3v47_A TOLL-like receptor 5B a 99.9 2.8E-24 9.5E-29 192.8 18.1 123 145-269 280-402 (455)
30 2z81_A CD282 antigen, TOLL-lik 99.9 3.5E-25 1.2E-29 203.2 10.7 225 29-269 2-230 (549)
31 2id5_A Lingo-1, leucine rich r 99.9 4.3E-24 1.5E-28 193.0 16.8 184 79-269 24-207 (477)
32 2o6s_A Variable lymphocyte rec 99.9 2.5E-24 8.4E-29 173.8 13.6 163 90-262 27-189 (208)
33 3m19_A Variable lymphocyte rec 99.9 1.7E-23 5.7E-28 173.8 18.3 173 91-269 14-186 (251)
34 3rfs_A Internalin B, repeat mo 99.9 2.7E-23 9.3E-28 174.6 19.3 161 90-254 62-222 (272)
35 3t6q_A CD180 antigen; protein- 99.9 1.2E-23 4.2E-28 195.2 17.7 136 65-202 56-193 (606)
36 2z80_A TOLL-like receptor 2, v 99.9 9.9E-25 3.4E-29 189.9 9.5 205 28-248 27-234 (353)
37 3rfs_A Internalin B, repeat mo 99.9 3.4E-23 1.2E-27 174.0 18.5 173 90-269 40-212 (272)
38 2z62_A TOLL-like receptor 4, v 99.9 9.8E-24 3.3E-28 177.5 15.2 183 79-269 20-207 (276)
39 3o6n_A APL1; leucine-rich repe 99.9 2.4E-23 8.1E-28 183.5 17.6 113 64-178 67-179 (390)
40 3t6q_A CD180 antigen; protein- 99.9 2.9E-23 1E-27 192.6 18.1 175 91-269 376-554 (606)
41 3oja_B Anopheles plasmodium-re 99.9 2.5E-23 8.6E-28 193.2 17.5 199 65-269 74-331 (597)
42 1ziw_A TOLL-like receptor 3; i 99.9 2.8E-23 9.5E-28 195.3 17.7 143 64-208 47-191 (680)
43 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-23 5.8E-28 194.2 15.6 198 65-269 349-552 (606)
44 1xku_A Decorin; proteoglycan, 99.9 6.5E-23 2.2E-27 176.7 18.1 230 19-258 19-283 (330)
45 1wwl_A Monocyte differentiatio 99.9 3.1E-24 1.1E-28 183.9 9.6 170 91-269 95-303 (312)
46 3vq2_A TLR4, TOLL-like recepto 99.9 5.9E-24 2E-28 197.3 12.2 198 66-267 32-234 (606)
47 3zyi_A Leucine-rich repeat-con 99.9 5.3E-23 1.8E-27 184.8 17.5 183 78-269 66-273 (452)
48 1p9a_G Platelet glycoprotein I 99.9 1.8E-22 6.1E-27 171.3 19.3 177 66-248 31-207 (290)
49 4eco_A Uncharacterized protein 99.9 1E-24 3.6E-29 203.9 5.5 44 108-151 239-284 (636)
50 2ft3_A Biglycan; proteoglycan, 99.9 8.5E-23 2.9E-27 176.2 15.5 182 78-269 45-248 (332)
51 2xwt_C Thyrotropin receptor; s 99.9 2E-23 6.9E-28 172.0 11.0 181 78-269 23-212 (239)
52 3j0a_A TOLL-like receptor 5; m 99.9 7.7E-23 2.6E-27 196.9 16.9 117 63-181 45-165 (844)
53 1wwl_A Monocyte differentiatio 99.9 2.6E-23 8.8E-28 178.1 11.7 194 68-269 45-260 (312)
54 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-22 1E-26 184.6 19.4 106 66-176 52-158 (562)
55 3e6j_A Variable lymphocyte rec 99.9 2.3E-22 7.9E-27 164.8 16.4 145 79-229 32-176 (229)
56 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-22 6.5E-27 184.0 17.3 84 185-269 321-406 (520)
57 1ziw_A TOLL-like receptor 3; i 99.9 3.3E-22 1.1E-26 188.0 18.8 187 78-268 393-615 (680)
58 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-22 3.7E-27 188.9 13.7 170 79-255 44-218 (635)
59 3oja_A Leucine-rich immune mol 99.9 1.3E-22 4.6E-27 183.9 13.2 193 67-269 35-244 (487)
60 3j0a_A TOLL-like receptor 5; m 99.9 3.6E-22 1.2E-26 192.2 16.9 181 71-254 29-221 (844)
61 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4.3E-26 167.4 18.3 163 90-269 62-224 (308)
62 4ecn_A Leucine-rich repeat pro 99.9 5.1E-23 1.7E-27 197.4 9.6 179 81-269 440-651 (876)
63 2z63_A TOLL-like receptor 4, v 99.9 2.7E-22 9.4E-27 184.5 14.1 177 67-246 29-210 (570)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-22 1.1E-26 171.6 13.3 195 65-269 33-244 (317)
65 2xot_A Amphoterin-induced prot 99.9 5E-22 1.7E-26 173.5 14.6 166 78-248 30-201 (361)
66 2z63_A TOLL-like receptor 4, v 99.9 3.9E-22 1.4E-26 183.5 14.1 182 79-268 20-206 (570)
67 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-21 6.4E-26 177.4 18.2 196 65-269 275-475 (520)
68 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-22 8.2E-27 184.3 12.2 187 76-269 15-203 (549)
69 2v9t_B SLIT homolog 2 protein 99.9 1.7E-21 5.7E-26 158.7 15.5 144 78-226 23-166 (220)
70 4glp_A Monocyte differentiatio 99.9 2.4E-22 8.3E-27 171.9 10.0 170 91-269 117-301 (310)
71 2v9t_B SLIT homolog 2 protein 99.9 2.5E-21 8.4E-26 157.7 15.0 151 94-248 14-164 (220)
72 2v70_A SLIT-2, SLIT homolog 2 99.9 2.5E-21 8.7E-26 157.7 14.8 152 72-228 17-169 (220)
73 2v70_A SLIT-2, SLIT homolog 2 99.9 2.4E-21 8.3E-26 157.8 14.7 155 94-253 14-169 (220)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.4E-21 1.5E-25 176.7 17.7 130 137-269 350-504 (562)
75 4fmz_A Internalin; leucine ric 99.9 1.2E-20 4.1E-25 163.4 19.1 164 91-269 177-340 (347)
76 4ezg_A Putative uncharacterize 99.9 4.1E-21 1.4E-25 153.6 14.5 150 90-248 43-193 (197)
77 4glp_A Monocyte differentiatio 99.9 1E-21 3.5E-26 168.0 11.3 172 91-269 91-279 (310)
78 3e6j_A Variable lymphocyte rec 99.9 1.4E-20 4.7E-25 154.2 16.7 155 93-253 21-175 (229)
79 1h6t_A Internalin B; cell adhe 99.9 1.3E-20 4.6E-25 159.8 16.9 161 91-268 46-206 (291)
80 4ay9_X Follicle-stimulating ho 99.9 2.1E-21 7.3E-26 168.8 11.5 218 31-267 9-231 (350)
81 3o53_A Protein LRIM1, AGAP0063 99.9 1E-21 3.6E-26 168.5 9.0 183 77-269 21-221 (317)
82 3oja_A Leucine-rich immune mol 99.8 2.7E-21 9.1E-26 175.4 10.9 171 91-269 34-221 (487)
83 1h6u_A Internalin H; cell adhe 99.8 3.8E-20 1.3E-24 158.2 17.4 162 91-269 41-202 (308)
84 2o6s_A Variable lymphocyte rec 99.8 5.8E-20 2E-24 148.0 17.4 156 94-254 10-165 (208)
85 2xot_A Amphoterin-induced prot 99.8 1.2E-20 3.9E-25 164.9 14.0 169 94-268 21-195 (361)
86 2ast_B S-phase kinase-associat 99.8 4.9E-22 1.7E-26 171.4 5.1 196 69-269 73-279 (336)
87 1o6v_A Internalin A; bacterial 99.8 7.8E-20 2.7E-24 164.7 18.9 162 91-269 221-382 (466)
88 4fmz_A Internalin; leucine ric 99.8 2E-19 6.9E-24 155.7 19.4 185 67-269 67-272 (347)
89 3cvr_A Invasion plasmid antige 99.8 1.3E-20 4.4E-25 173.3 12.1 195 20-254 35-247 (571)
90 1o6v_A Internalin A; bacterial 99.8 1.5E-19 5.3E-24 162.8 18.9 183 67-269 178-360 (466)
91 1h6t_A Internalin B; cell adhe 99.8 3.8E-20 1.3E-24 157.0 13.9 159 74-248 54-212 (291)
92 4ezg_A Putative uncharacterize 99.8 3.2E-20 1.1E-24 148.5 12.0 148 112-269 40-188 (197)
93 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5E-24 167.7 16.8 166 67-248 44-209 (605)
94 4g8a_A TOLL-like receptor 4; l 99.8 1.9E-20 6.4E-25 173.9 10.5 190 54-248 42-236 (635)
95 1m9s_A Internalin B; cell inva 99.8 2.2E-19 7.5E-24 166.5 17.0 163 90-269 42-204 (605)
96 2ca6_A RAN GTPase-activating p 99.8 1E-21 3.4E-26 172.9 1.0 177 91-269 94-310 (386)
97 3bz5_A Internalin-J, INLJ; leu 99.8 5.1E-19 1.8E-23 159.1 18.5 162 65-248 63-245 (457)
98 2ast_B S-phase kinase-associat 99.8 8.4E-21 2.9E-25 163.6 6.3 175 91-269 70-254 (336)
99 4b8c_D Glucose-repressible alc 99.8 3E-21 1E-25 182.8 3.0 201 3-234 131-338 (727)
100 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-18 4.7E-23 156.4 18.9 170 73-269 49-240 (457)
101 2ell_A Acidic leucine-rich nuc 99.8 4.1E-19 1.4E-23 138.2 12.7 135 116-254 24-163 (168)
102 3goz_A Leucine-rich repeat-con 99.8 2.2E-20 7.4E-25 163.1 5.6 199 68-269 24-260 (362)
103 1xeu_A Internalin C; cellular 99.8 6.6E-19 2.2E-23 147.2 13.7 156 76-248 29-184 (263)
104 1xeu_A Internalin C; cellular 99.8 2E-19 6.9E-24 150.3 10.4 161 91-269 19-179 (263)
105 1w8a_A SLIT protein; signaling 99.8 9.3E-19 3.2E-23 139.4 12.9 132 94-229 11-143 (192)
106 2ell_A Acidic leucine-rich nuc 99.8 5E-19 1.7E-23 137.8 10.8 134 90-226 23-161 (168)
107 4ay9_X Follicle-stimulating ho 99.8 4.9E-19 1.7E-23 153.9 11.5 185 77-269 20-209 (350)
108 3cvr_A Invasion plasmid antige 99.8 8.1E-19 2.8E-23 161.3 12.8 171 67-269 60-237 (571)
109 2je0_A Acidic leucine-rich nuc 99.8 9.3E-19 3.2E-23 133.5 11.0 127 116-244 17-148 (149)
110 2ca6_A RAN GTPase-activating p 99.8 4.8E-20 1.6E-24 162.1 4.2 203 64-269 30-281 (386)
111 1w8a_A SLIT protein; signaling 99.8 2E-18 6.8E-23 137.5 13.0 130 71-205 13-143 (192)
112 1dce_A Protein (RAB geranylger 99.8 3.1E-21 1.1E-25 177.7 -3.8 195 65-269 348-567 (567)
113 3goz_A Leucine-rich repeat-con 99.8 2.8E-20 9.6E-25 162.4 2.4 188 77-269 10-232 (362)
114 2je0_A Acidic leucine-rich nuc 99.8 1.2E-18 4.2E-23 132.8 10.1 129 90-221 16-149 (149)
115 2wfh_A SLIT homolog 2 protein 99.8 6.8E-18 2.3E-22 134.6 13.5 128 94-226 13-140 (193)
116 1jl5_A Outer protein YOPM; leu 99.8 9.2E-19 3.1E-23 157.3 7.8 149 93-268 73-221 (454)
117 1jl5_A Outer protein YOPM; leu 99.7 3.7E-17 1.3E-21 146.9 17.0 173 67-269 92-264 (454)
118 2o6r_A Variable lymphocyte rec 99.7 2.8E-17 9.5E-22 128.9 13.8 133 93-229 9-141 (177)
119 3g06_A SSPH2 (leucine-rich rep 99.7 7.7E-17 2.6E-21 149.8 18.8 71 188-269 221-291 (622)
120 1z7x_W Ribonuclease inhibitor; 99.7 1.4E-19 4.7E-24 162.4 -0.6 174 92-268 200-404 (461)
121 2o6r_A Variable lymphocyte rec 99.7 8.5E-17 2.9E-21 126.1 14.6 125 76-205 17-141 (177)
122 2wfh_A SLIT homolog 2 protein 99.7 5.7E-17 1.9E-21 129.2 13.1 123 74-202 18-140 (193)
123 1z7x_W Ribonuclease inhibitor; 99.7 8.7E-19 3E-23 157.2 1.1 156 92-248 86-268 (461)
124 3g06_A SSPH2 (leucine-rich rep 99.7 2.3E-16 7.8E-21 146.6 17.3 174 66-269 61-268 (622)
125 1ds9_A Outer arm dynein; leuci 99.7 1.4E-19 4.8E-24 144.8 -4.4 150 91-248 18-184 (198)
126 1a9n_A U2A', U2A'; complex (nu 99.7 7.8E-17 2.7E-21 126.3 10.3 130 113-248 16-152 (176)
127 4b8c_D Glucose-repressible alc 99.7 1.7E-17 5.9E-22 157.0 5.9 121 82-208 216-336 (727)
128 1a9n_A U2A', U2A'; complex (nu 99.7 1.8E-16 6.3E-21 124.2 8.8 129 135-269 14-147 (176)
129 1ds9_A Outer arm dynein; leuci 99.6 3.3E-19 1.1E-23 142.6 -8.5 151 112-268 14-180 (198)
130 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.8E-20 131.5 11.8 102 163-268 225-327 (329)
131 1dce_A Protein (RAB geranylger 99.6 2E-15 6.8E-20 139.1 13.2 158 77-243 397-567 (567)
132 3g39_A Variable lymphocyte rec 99.6 8.7E-15 3E-19 114.1 12.7 104 94-201 12-115 (170)
133 3g39_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 115.4 11.1 109 117-228 10-118 (170)
134 2r9u_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 113.9 11.2 107 118-227 14-120 (174)
135 2r9u_A Variable lymphocyte rec 99.6 2.1E-14 7.2E-19 112.3 12.5 106 93-202 14-119 (174)
136 3un9_A NLR family member X1; l 99.5 1E-15 3.5E-20 134.0 0.5 160 88-248 69-251 (372)
137 3ogk_B Coronatine-insensitive 99.5 4E-15 1.4E-19 137.4 0.8 152 114-268 162-324 (592)
138 3ogk_B Coronatine-insensitive 99.4 2.4E-14 8.4E-19 132.1 3.0 61 91-152 164-232 (592)
139 2ifg_A High affinity nerve gro 99.4 5.1E-13 1.7E-17 115.5 10.6 106 119-227 11-118 (347)
140 3sb4_A Hypothetical leucine ri 99.4 8.5E-13 2.9E-17 113.4 11.5 174 65-243 100-328 (329)
141 2ifg_A High affinity nerve gro 99.4 8.3E-13 2.8E-17 114.1 11.2 106 94-202 11-117 (347)
142 4fdw_A Leucine rich hypothetic 99.4 7.5E-12 2.6E-16 110.5 15.5 192 65-268 179-376 (401)
143 2p1m_B Transport inhibitor res 99.4 1.4E-14 4.7E-19 133.7 -2.8 176 90-269 288-513 (594)
144 4fdw_A Leucine rich hypothetic 99.4 6.5E-12 2.2E-16 110.9 13.7 180 78-268 146-351 (401)
145 2p1m_B Transport inhibitor res 99.4 7.8E-14 2.7E-18 128.7 0.9 84 91-175 105-195 (594)
146 3un9_A NLR family member X1; l 99.4 5.7E-14 2E-18 122.9 -0.5 157 91-248 101-282 (372)
147 2ra8_A Uncharacterized protein 99.0 1.7E-10 5.9E-15 100.3 5.8 135 111-248 167-319 (362)
148 2ra8_A Uncharacterized protein 98.9 1E-09 3.4E-14 95.4 6.8 152 90-247 171-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.9 1.3E-09 4.4E-14 85.8 4.8 120 109-248 29-163 (185)
150 1io0_A Tropomodulin; LRR prote 98.8 1.2E-09 4.1E-14 86.0 1.7 89 90-178 35-137 (185)
151 3rw6_A Nuclear RNA export fact 98.8 1.6E-09 5.5E-14 89.9 1.8 63 162-226 168-234 (267)
152 4fs7_A Uncharacterized protein 98.7 1.5E-07 5.3E-12 82.5 12.9 101 160-267 293-393 (394)
153 3rw6_A Nuclear RNA export fact 98.5 1.1E-07 3.9E-12 78.8 6.8 80 186-268 168-257 (267)
154 4fs7_A Uncharacterized protein 98.5 2.9E-06 9.8E-11 74.3 13.9 191 64-269 183-373 (394)
155 4gt6_A Cell surface protein; l 98.4 5.9E-06 2E-10 72.3 15.1 103 160-268 261-363 (394)
156 3e4g_A ATP synthase subunit S, 98.4 3.2E-07 1.1E-11 71.0 5.4 84 140-223 61-150 (176)
157 3e4g_A ATP synthase subunit S, 98.4 2.5E-07 8.6E-12 71.7 4.7 93 156-248 53-151 (176)
158 4gt6_A Cell surface protein; l 98.4 6.3E-06 2.1E-10 72.1 13.8 126 134-268 259-384 (394)
159 4h09_A Hypothetical leucine ri 98.3 1.8E-05 6.2E-10 68.6 15.8 104 159-267 235-338 (379)
160 4h09_A Hypothetical leucine ri 98.3 1.4E-05 4.6E-10 69.5 13.5 147 111-264 212-358 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 2.3E-05 7.9E-10 61.7 5.4 42 112-153 37-83 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00047 1.6E-08 54.2 6.3 112 137-248 38-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00066 2.3E-08 49.7 6.3 57 167-225 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.0 0.0016 5.5E-08 47.6 6.1 33 118-150 33-65 (130)
165 2lz0_A Uncharacterized protein 66.7 11 0.00038 25.5 5.0 15 135-149 15-29 (100)
166 2lz0_A Uncharacterized protein 47.2 30 0.001 23.2 4.5 41 109-150 13-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-37 Score=264.44 Aligned_cols=255 Identities=25% Similarity=0.308 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHhcccC----CCCCCCCCCCCCCC--CCCCCceEeecCCCceEEEEEEeC--------CCCCCCccccc
Q 036300 2 ERKEKEALYSTIQGFVG----KWWNGSDLYPDPFG--RTGLQGVSCDFFHGLWHVSAISIG--------PVYDNSLVCSQ 67 (269)
Q Consensus 2 ~~~~~~~l~~~~~~~~~----~~W~~~~~~~~~C~--~~~~~gv~C~~~~~~~~v~~l~l~--------~~~~~~~~~~~ 67 (269)
.++|++||++||+++.+ ++|..+ .+||. |. ||.|+......+|+.+++. .+++....+..
T Consensus 4 ~~~~~~aL~~~k~~~~~~~~l~~W~~~---~~~C~~~w~---gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 4 NPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWL---GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGTTCCTT---SCTTTTCST---TEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CHHHHHHHHHHHHhcCCcccccCCCCC---CCCCcCCCc---ceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 47899999999999976 579765 38998 87 9999865411289999983 23333344455
Q ss_pred ccccCCC--CCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300 68 CKIFKPP--LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL 145 (269)
Q Consensus 68 l~~~~~~--~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 145 (269)
+..+... .+..+.+|..+ .. +++|++|++++| .+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 78 L~~L~L~~~n~l~~~~p~~l-~~-l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAI-AK-LTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CSEEEEEEETTEESCCCGGG-GG-CTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCeeeCCCCCcccccCChhH-hc-CCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 5555554 34556777765 44 488999999988 7888888888889999999999999888888888888999999
Q ss_pred EccCCcCCCCCccccCCCC-CCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCcc
Q 036300 146 ALAGNQINGQIPASIGGLT-KLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224 (269)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 224 (269)
++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+. |+.|++++|++++..|..+..+++|++|++++|.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 9999988888888888887 888888888888877777777766 77777777777776777777777777777777777
Q ss_pred CCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 225 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++.+|. +..+++|++|++++|.+ .+.+|. .+..+++|++|++
T Consensus 234 ~~~~~~-~~~l~~L~~L~Ls~N~l-~~~~p~-~l~~l~~L~~L~L 275 (313)
T 1ogq_A 234 AFDLGK-VGLSKNLNGLDLRNNRI-YGTLPQ-GLTQLKFLHSLNV 275 (313)
T ss_dssp CCBGGG-CCCCTTCCEEECCSSCC-EECCCG-GGGGCTTCCEEEC
T ss_pred eeecCc-ccccCCCCEEECcCCcc-cCcCCh-HHhcCcCCCEEEC
Confidence 655544 56667777777777777 555654 5666777776654
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-33 Score=264.88 Aligned_cols=221 Identities=17% Similarity=0.261 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhcccCCCCCCCC-------C---CCCCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccC
Q 036300 3 RKEKEALYSTIQGFVGKWWNGSD-------L---YPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFK 72 (269)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~W~~~~-------~---~~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~ 72 (269)
.+|++||.++|+++++..|.... . ..++|.|..+.||+|+..+ +|++|++..
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~---~V~~L~L~~--------------- 90 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNG---RVTGLSLEG--------------- 90 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTC---CEEEEECTT---------------
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCC---CEEEEEecC---------------
Confidence 35999999999999876555211 1 1488999333499998764 899999931
Q ss_pred CCCCCCcccCchhHHhhcCCccEEEccCCC--------------------------------------------------
Q 036300 73 PPLQSPIEIPSSNWQKLANSLDSLEFGSNP-------------------------------------------------- 102 (269)
Q Consensus 73 ~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~-------------------------------------------------- 102 (269)
.+..|.+|+.+ .. +++|++|+|++|.
T Consensus 91 --~~l~g~lp~~l-~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 91 --FGASGRVPDAI-GQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp --SCCEEEECGGG-GG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred --cccCCcCChHH-hc-CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence 12334444433 22 2555555554441
Q ss_pred ---------------------------CceeccCccccCCCCCCEEEcccCCCCCC-----------------CCCCCC-
Q 036300 103 ---------------------------RLIGTIPTSIDYLKNLQSLVLLEKGLTGK-----------------LPIEPS- 137 (269)
Q Consensus 103 ---------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~- 137 (269)
.+.+ +|+.++++++|++|++++|.+++. +|..++
T Consensus 167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~ 245 (636)
T 4eco_A 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245 (636)
T ss_dssp HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence 1122 455555555555555555555543 555555
Q ss_pred -CCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCc-CCc-hhhhhhcCc------ccCCEEeCcCCcCCCcCch--
Q 036300 138 -KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN-LSG-SMLLTLGKL------ARLLKLDLSYNNLQEKIPK-- 206 (269)
Q Consensus 138 -~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~ls~n~l~~~~p~-- 206 (269)
++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|.
T Consensus 246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~ 324 (636)
T 4eco_A 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET 324 (636)
T ss_dssp GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred cccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence 55555555555555555555555555555555555555 554 455544443 55555555555555 4444
Q ss_pred hhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 207 EIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 207 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
.++.+++|++|++++|.++|.+| .+..+++|++|++++|.+
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc
Confidence 45555555555555555554444 444444444444444444
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-33 Score=268.11 Aligned_cols=238 Identities=21% Similarity=0.259 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCC--CCCC--CCC------CCC---CceEeecCCCceEEEEEEeCCCCCCCccccccc
Q 036300 3 RKEKEALYSTIQGFVGKWWNGSDL--YPDP--FGR------TGL---QGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCK 69 (269)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~W~~~~~--~~~~--C~~------~~~---~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~ 69 (269)
.+|++||++||+++.+.+|+.+.+ ..+| |.| ..| .||.|+..+ +|++|+|.
T Consensus 268 ~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~---~V~~L~Ls------------- 331 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNG---RVTGLSLA------------- 331 (876)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTS---CEEEEECT-------------
T ss_pred hHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCCC---CEEEEECc-------------
Confidence 469999999999999999987641 1245 999 112 499999744 89999993
Q ss_pred ccCCCCCCCcccCchhHHhhcCCccEEEc-cCCCCceec-----------------------------------------
Q 036300 70 IFKPPLQSPIEIPSSNWQKLANSLDSLEF-GSNPRLIGT----------------------------------------- 107 (269)
Q Consensus 70 ~~~~~~~~~~~lp~~~~~~l~~~L~~L~l-~~n~~l~~~----------------------------------------- 107 (269)
..+..|.+|+.+ .+ +++|++|+| ++| .+.|.
T Consensus 332 ----~~~L~G~ip~~l-~~-L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 332 ----GFGAKGRVPDAI-GQ-LTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp ----TTCCEEEECGGG-GG-CTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred ----cCCCCCcCchHH-hc-cccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 123445666554 23 366666666 444 22222
Q ss_pred -----------------------------------cCccccCCCCCCEEEcccCCCCC-----------------CCCCC
Q 036300 108 -----------------------------------IPTSIDYLKNLQSLVLLEKGLTG-----------------KLPIE 135 (269)
Q Consensus 108 -----------------------------------~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~ 135 (269)
+|+.++++++|++|+|++|.+++ .+|..
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence 56666677777777777777765 26666
Q ss_pred CC--CCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCc-CCc-hhhhhhcCcc-------cCCEEeCcCCcCCCcC
Q 036300 136 PS--KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN-LSG-SMLLTLGKLA-------RLLKLDLSYNNLQEKI 204 (269)
Q Consensus 136 ~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~ls~n~l~~~~ 204 (269)
++ ++++|++|+|++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.++ +|+.|++++|+++ .+
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 66 67777777777777666677667777777777777776 666 5666555544 6777777777776 56
Q ss_pred ch--hhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcC-CceecC
Q 036300 205 PK--EIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQN-LEIWIF 269 (269)
Q Consensus 205 p~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~-L~~L~l 269 (269)
|. .++.+++|++|++++|.++ .+| .++.+++|+.|++++|.+ . .+|. .+.++++ |+.|++
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l-~-~lp~-~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI-E-EIPE-DFCAFTDQVEGLGF 626 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCC-S-CCCT-TSCEECTTCCEEEC
T ss_pred CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcc-c-cchH-HHhhccccCCEEEC
Confidence 66 6667777777777777766 555 666666677777777766 2 5654 4556666 666654
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5e-33 Score=240.34 Aligned_cols=256 Identities=22% Similarity=0.219 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHhccc-C-----CCCCC-CCCCCCCCCCCCCCceEeecC------CCceEEEEEEe-----CCCCCCCcc
Q 036300 3 RKEKEALYSTIQGFV-G-----KWWNG-SDLYPDPFGRTGLQGVSCDFF------HGLWHVSAISI-----GPVYDNSLV 64 (269)
Q Consensus 3 ~~~~~~l~~~~~~~~-~-----~~W~~-~~~~~~~C~~~~~~gv~C~~~------~~~~~v~~l~l-----~~~~~~~~~ 64 (269)
++|++||++||+++. + ..|.. .....++|.|. |+.|+.. ....+|+.+++ ..+++....
T Consensus 26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~---g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~ 102 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT---GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR 102 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSH---HHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGG
T ss_pred chHHHHHHHHHHhccCCchhhhhhhcccccccccccccC---CcchhhhHHHHhcccccceeEEEccCCCchhcChhhhh
Confidence 468999999999884 2 34631 11125899998 9999531 00116778877 345666666
Q ss_pred cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCC------
Q 036300 65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSK------ 138 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------ 138 (269)
+..+..+....+.+..+|..+ .. +++|++|++++| .+. .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~-~~-l~~L~~L~Ls~n-~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTM-QQ-FAGLETLTLARN-PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCG-GG-GTTCSEEEEESC-CCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred CCCCCEEECCCCCccchhHHH-hc-cCCCCEEECCCC-ccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 777777777777777999876 44 499999999999 677 78999999999999999999998899988765
Q ss_pred ---CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCC
Q 036300 139 ---LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVT 215 (269)
Q Consensus 139 ---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 215 (269)
+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 999999999999999 889999999999999999999994 666799999999999999999999999999999999
Q ss_pred EEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 216 FLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 216 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+|++++|.+.+.+|..+..+++|++|++++|.+ .+.+|. .+.++++|+.+++
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~-~l~~L~~L~~l~l 308 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPS-LIAQLPANCIILV 308 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCG-GGGGSCTTCEEEC
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccH-HHhhccCceEEeC
Confidence 999999999999999999999999999999999 889996 8899999998864
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-32 Score=262.37 Aligned_cols=246 Identities=24% Similarity=0.286 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHhcccC----CCCCCCCCCCCCCCCCCCCceEeecCCCceEEEEEEeCCCC---------CCCccccccc
Q 036300 3 RKEKEALYSTIQGFVG----KWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVY---------DNSLVCSQCK 69 (269)
Q Consensus 3 ~~~~~~l~~~~~~~~~----~~W~~~~~~~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~---------~~~~~~~~l~ 69 (269)
++|++||++||+++.+ ++|..+ .|||.|. ||+|+ . + +|+.+++.... +.......+.
T Consensus 11 ~~~~~all~~k~~~~~~~~l~~W~~~---~~~C~w~---gv~C~-~-~--~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 11 YREIHQLISFKDVLPDKNLLPDWSSN---KNPCTFD---GVTCR-D-D--KVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp HHHHHHHHHHHTTCSCTTSSTTCCTT---SCGGGST---TEEEE-T-T--EEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred HHHHHHHHHHHhhCCCcccccCCCCC---CCCcCCc---ceEEC-C-C--cEEEEECCCCCcCCccCccChhHhccCccc
Confidence 6799999999999864 579755 3999998 99999 3 4 99999995321 1111122222
Q ss_pred ccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCc--cccCCCCCCEEEcccCCCCCCCCCCC-CCCCCCCEEE
Q 036300 70 IFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPT--SIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLA 146 (269)
Q Consensus 70 ~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~ 146 (269)
......+....+|+.+ .. +++|++|+|++| .+.+.+|. .++.+++|++|++++|.+.+..|..+ ..+++|++|+
T Consensus 81 ~l~~~~~~~~~l~~~~-~~-l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGF-KC-SASLTSLDLSRN-SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp EEECTTSCEEECCCCC-CC-CTTCCEEECCSS-EEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred ccCCcCCCcCCCchhh-cc-CCCCCEEECCCC-cCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 2222223333344554 33 488999999999 78888887 88899999999999998888777765 7888888999
Q ss_pred ccCCcCCCCCccc---cCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCc
Q 036300 147 LAGNQINGQIPAS---IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN 223 (269)
Q Consensus 147 L~~n~l~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 223 (269)
+++|.+++..|.. +.++++|++|++++|.+++..+. ..+++|++|++++|++.+.+|. ++.+++|++|++++|.
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc
Confidence 9888888777665 67777888888888877755443 5677777777777777776665 7777777777777777
Q ss_pred cCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 224 FLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 224 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
+++.+|..+..+++|++|++++|.+ .+.+|.. .+++|++|+
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~---~l~~L~~L~ 275 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQF-VGPIPPL---PLKSLQYLS 275 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCC-EESCCCC---CCTTCCEEE
T ss_pred CCCcccHHHhcCCCCCEEECCCCcc-cCccCcc---ccCCCCEEE
Confidence 7777777777777777777777777 5444431 445555544
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=2.6e-28 Score=205.09 Aligned_cols=210 Identities=21% Similarity=0.256 Sum_probs=129.5
Q ss_pred CCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceecc
Q 036300 29 DPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTI 108 (269)
Q Consensus 29 ~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~ 108 (269)
+.|.|. |+.|.+... ++.+++. .+.+..+|..+ .+++++|++++| .+.+..
T Consensus 3 ~~C~~~---~~~C~c~~~---~~~l~~~------------------~~~l~~ip~~~----~~~l~~L~l~~n-~l~~~~ 53 (270)
T 2o6q_A 3 ALCKKD---GGVCSCNNN---KNSVDCS------------------SKKLTAIPSNI----PADTKKLDLQSN-KLSSLP 53 (270)
T ss_dssp CCBGGG---TCSBEEETT---TTEEECT------------------TSCCSSCCSCC----CTTCSEEECCSS-CCSCCC
T ss_pred ccCCCC---CCCCEeCCC---CCEEEcc------------------CCCCCccCCCC----CCCCCEEECcCC-CCCeeC
Confidence 889997 899876542 2334431 12223344432 345667777666 555544
Q ss_pred CccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcc
Q 036300 109 PTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLA 188 (269)
Q Consensus 109 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 188 (269)
+..|..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..++
T Consensus 54 ~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133 (270)
T ss_dssp TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc
Confidence 45666667777777777766644444456666777777777766644444556666677777777766655555566666
Q ss_pred cCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 189 RLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 189 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+ ..+|...+..+++|+.|+
T Consensus 134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC--SCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC--CcCCHHHhccccCCCEEE
Confidence 777777777766654444466666677777777766655555566666677777777766 345544566666666665
Q ss_pred C
Q 036300 269 F 269 (269)
Q Consensus 269 l 269 (269)
+
T Consensus 212 l 212 (270)
T 2o6q_A 212 L 212 (270)
T ss_dssp C
T ss_pred e
Confidence 3
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.3e-27 Score=202.18 Aligned_cols=200 Identities=20% Similarity=0.150 Sum_probs=175.9
Q ss_pred ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCC-CCCCCCCCCCCCCCCCE
Q 036300 66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKG-LTGKLPIEPSKLVNLRR 144 (269)
Q Consensus 66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~ 144 (269)
.++..+....+.+..+|...|..+ ++|++|++++| .+.+..|..+..+++|++|++++|. +....|..+..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 355666666677888888777766 89999999999 7888878899999999999999997 77666888999999999
Q ss_pred EEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCcc
Q 036300 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224 (269)
Q Consensus 145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 224 (269)
|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 99999999977788899999999999999999977777789999999999999999976666789999999999999999
Q ss_pred CCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 225 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++..|..+..+++|++|++++|.+ ..++...+..+++|++|++
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCC--SCCCHHHHTTCTTCCEEEC
T ss_pred cccCHhHccCcccccEeeCCCCcC--CcCCHHHcccCcccCEEec
Confidence 988899999999999999999999 4566557889999999875
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.7e-27 Score=225.82 Aligned_cols=201 Identities=29% Similarity=0.413 Sum_probs=154.8
Q ss_pred ccccccccCCCCC-CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCC
Q 036300 64 VCSQCKIFKPPLQ-SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNL 142 (269)
Q Consensus 64 ~~~~l~~~~~~~~-~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 142 (269)
.+.++..+....+ ..+.+|..+. . +++|++|++++| .+.+.+|..+..+++|++|++++|++++.+|..++.+++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~-~-l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELM-Y-VKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGG-G-CTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCCCCEEECCCCcccCcCCHHHc-C-CCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 3444444444443 3346666542 3 477888888888 6777778788888888888888888887888888888888
Q ss_pred CEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhc-------------------------------------
Q 036300 143 RRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG------------------------------------- 185 (269)
Q Consensus 143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------- 185 (269)
++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+.
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 8888888888877888888888888888888877766654332
Q ss_pred ---------------------------------CcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhh
Q 036300 186 ---------------------------------KLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSI 232 (269)
Q Consensus 186 ---------------------------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 232 (269)
.+++|+.|++++|+++|.+|..++.+++|+.|+|++|.++|.+|..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence 24567888888888888888888888888888888888888888888
Q ss_pred hcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 233 EEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 233 ~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+.+++|++|++++|++ ++.+|. .+.++++|++|++
T Consensus 677 ~~L~~L~~LdLs~N~l-~g~ip~-~l~~l~~L~~L~l 711 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKL-DGRIPQ-AMSALTMLTEIDL 711 (768)
T ss_dssp GGCTTCCEEECCSSCC-EECCCG-GGGGCCCCSEEEC
T ss_pred hCCCCCCEEECCCCcc-cCcCCh-HHhCCCCCCEEEC
Confidence 8888888888888888 778886 7888888888875
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.1e-27 Score=202.81 Aligned_cols=232 Identities=18% Similarity=0.157 Sum_probs=176.1
Q ss_pred CCCCCCCCCceEeecCCC-------ceEEEEEEeC-----CCCCCC-cccccccccCCCCCCCccc---CchhHHhhcCC
Q 036300 29 DPFGRTGLQGVSCDFFHG-------LWHVSAISIG-----PVYDNS-LVCSQCKIFKPPLQSPIEI---PSSNWQKLANS 92 (269)
Q Consensus 29 ~~C~~~~~~gv~C~~~~~-------~~~v~~l~l~-----~~~~~~-~~~~~l~~~~~~~~~~~~l---p~~~~~~l~~~ 92 (269)
..|.|. +|.|...+- ..+++.+++. .++... ..+.+++.+....+.+..+ |..++ . +++
T Consensus 5 C~C~~~---~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~-~~~ 79 (306)
T 2z66_A 5 CSCSGT---EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-G-TTS 79 (306)
T ss_dssp CEEETT---EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-S-CSC
T ss_pred CeeCCC---EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-c-ccc
Confidence 346776 999975320 0134555552 233322 2444555555554544433 44433 2 377
Q ss_pred ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCC-CCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEc
Q 036300 93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP-IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL 171 (269)
Q Consensus 93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 171 (269)
|++|++++| .+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 80 L~~L~Ls~n-~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 80 LKYLDLSFN-GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCEEECCSC-SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cCEEECCCC-ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 888888888 554 466678889999999999999886544 57889999999999999998778888899999999999
Q ss_pred cCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300 172 SRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250 (269)
Q Consensus 172 ~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 250 (269)
++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+ .
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~ 236 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-M 236 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC-C
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC-c
Confidence 9999986 5788888999999999999999987788899999999999999999987777889999999999999999 5
Q ss_pred CCCCccccccCc-CCceecC
Q 036300 251 GGLNGIRWENLQ-NLEIWIF 269 (269)
Q Consensus 251 ~~~p~~~~~~l~-~L~~L~l 269 (269)
+..|. .+..++ +|++|++
T Consensus 237 ~~~~~-~~~~~~~~L~~L~L 255 (306)
T 2z66_A 237 TSKKQ-ELQHFPSSLAFLNL 255 (306)
T ss_dssp BCSSS-SCCCCCTTCCEEEC
T ss_pred ccCHH-HHHhhhccCCEEEc
Confidence 55554 677774 8998875
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.2e-27 Score=202.16 Aligned_cols=194 Identities=19% Similarity=0.253 Sum_probs=174.6
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
.+..+....+.+..+|..++. +++|++|++++| .+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFR--LSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGG--GTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ceeEEEccCCCchhcChhhhh--CCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 344455555677799998755 499999999999 677 89999999999999999999999 8899999999999999
Q ss_pred ccCCcCCCCCccccCC---------CCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEE
Q 036300 147 LAGNQINGQIPASIGG---------LTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFL 217 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 217 (269)
+++|.+.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 9999988899987654 999999999999999 788889999999999999999996 67779999999999
Q ss_pred EccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 218 DLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 218 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++++|.+.+.+|..+..+++|++|++++|.+ .+.+|. .+.++++|++|++
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~~p~-~~~~l~~L~~L~L 284 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSN-LLTLPL-DIHRLTQLEKLDL 284 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-CCBCCT-TGGGCTTCCEEEC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCc-hhhcch-hhhcCCCCCEEeC
Confidence 9999999999999999999999999999998 788886 6899999999986
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.2e-27 Score=205.30 Aligned_cols=204 Identities=26% Similarity=0.377 Sum_probs=179.1
Q ss_pred CCCCCcccccccccCCCCCCC-cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCC
Q 036300 58 VYDNSLVCSQCKIFKPPLQSP-IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP 136 (269)
Q Consensus 58 ~~~~~~~~~~l~~~~~~~~~~-~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 136 (269)
++.....+.++..+....+.+ +.+|..+ .. +++|++|++++| .+.+.+|..+..+++|++|++++|.+++.+|..+
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~-l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 169 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQ-IKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGG-GG-CTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHH-hC-CCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH
Confidence 344444555666665554544 4778765 44 499999999999 7988999999999999999999999999999999
Q ss_pred CCCC-CCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCC
Q 036300 137 SKLV-NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVT 215 (269)
Q Consensus 137 ~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 215 (269)
..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|+.|++++|++++..|. +..+++|+
T Consensus 170 ~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~ 247 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247 (313)
T ss_dssp GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCC
T ss_pred hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCC
Confidence 9998 999999999999989999999887 99999999999999999999999999999999999976665 88899999
Q ss_pred EEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 216 FLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 216 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+|++++|.+++.+|..+..+++|++|++++|++ .+.+|. ...+++|+.|++
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~ip~--~~~l~~L~~l~l 298 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQ--GGNLQRFDVSAY 298 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCSSEE-EEECCC--STTGGGSCGGGT
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcCCcc-cccCCC--CccccccChHHh
Confidence 999999999999999999999999999999999 778886 378899988865
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=3.6e-26 Score=189.92 Aligned_cols=169 Identities=22% Similarity=0.201 Sum_probs=151.0
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP 157 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 157 (269)
+.++|..+ .+.++.|++++| .+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 26 l~~~p~~~----~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 26 LDSVPSGI----PADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp CSSCCSCC----CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ccccCCCC----CCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence 34556544 478999999999 7888888889999999999999999998888889999999999999999996666
Q ss_pred cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300 158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS 237 (269)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 237 (269)
..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 78899999999999999999777777889999999999999999766668999999999999999999888889999999
Q ss_pred CCeEEccCCCCCCCC
Q 036300 238 LKEMVVSNNPIFGGG 252 (269)
Q Consensus 238 L~~L~l~~N~l~~~~ 252 (269)
|++|++++|++ ...
T Consensus 181 L~~L~l~~N~~-~c~ 194 (251)
T 3m19_A 181 LQTITLFGNQF-DCS 194 (251)
T ss_dssp CCEEECCSCCB-CTT
T ss_pred CCEEEeeCCce-eCC
Confidence 99999999999 444
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4e-26 Score=198.76 Aligned_cols=198 Identities=18% Similarity=0.166 Sum_probs=107.4
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC--CCCCCCCCCE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI--EPSKLVNLRR 144 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~ 144 (269)
++..+....+.+..++...|..+ ++|++|++++| .+.+..+..+..+++|++|++++|.+++ +|. .+..+++|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSL-GSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI 153 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCE
T ss_pred CCCEEECCCCccCccCHhhcCCC-CCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcE
Confidence 33333333344444443333333 44555555554 3433222224445555555555555442 222 3444555555
Q ss_pred EEccCCc-CCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCc
Q 036300 145 LALAGNQ-INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN 223 (269)
Q Consensus 145 L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 223 (269)
|++++|. ++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|++....+..+..+++|++|++++|.
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 5555542 332233444555555555555555554445555555555555555555543212223345667777777776
Q ss_pred cCCc-------------------------------chhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 224 FLGG-------------------------------LVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 224 l~~~-------------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+++. +|..+..+++|++|++++|.+ ..+|...+..+++|++|++
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l--~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL--KSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC--CccCHHHHhcCCCCCEEEe
Confidence 6652 455677888999999999999 4788766788999998875
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.5e-25 Score=199.96 Aligned_cols=196 Identities=21% Similarity=0.211 Sum_probs=126.7
Q ss_pred ccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEc
Q 036300 68 CKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLAL 147 (269)
Q Consensus 68 l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 147 (269)
+..+....+.+..++...|..+ ++|++|+|++| .+.+..+..|..+++|++|+|++|.+++..+..+..+++|++|++
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred ccEEECcCCcCceECHHHcCCC-CCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 3334444444455544444444 55666666666 455555555555666666666666655444444555555666665
Q ss_pred cCCcCCCCCcc-------------------------ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300 148 AGNQINGQIPA-------------------------SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202 (269)
Q Consensus 148 ~~n~l~~~~p~-------------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 202 (269)
++|.++...+. .|..+++|++|++++|.+++ +| .+..+++|+.|++++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 55555522222 35556666666666666653 23 35566777778888888877
Q ss_pred cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 203 KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 203 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+ ..+|...+..+++|+.|+|
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL--SSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--SCCCTTSSTTCTTCCEEEC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC--CccChHHhccccCCCEEEc
Confidence 7777888888888888888888877778888888888888888888 4566557778888888765
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=7.1e-26 Score=203.21 Aligned_cols=129 Identities=23% Similarity=0.305 Sum_probs=81.2
Q ss_pred EEEEEEeCC-----C-CCCCcccccccccCCCCCCC-cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEE
Q 036300 49 HVSAISIGP-----V-YDNSLVCSQCKIFKPPLQSP-IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSL 121 (269)
Q Consensus 49 ~v~~l~l~~-----~-~~~~~~~~~l~~~~~~~~~~-~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L 121 (269)
+++.+++.. + +.....+.+++.+....+.. +.+|...|.++ ++|++|++++| .+.+..|..|..+++|++|
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLDYN-QFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-TTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc-ccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence 456666631 1 22233455555555554433 47776666665 78888888888 6777777777777788888
Q ss_pred EcccCCCCCCCCCC--CCCCCCCCEEEccCCcCCCCCccc-cCCCCCCCEEEccCCcCCch
Q 036300 122 VLLEKGLTGKLPIE--PSKLVNLRRLALAGNQINGQIPAS-IGGLTKLLIFDLSRNNLSGS 179 (269)
Q Consensus 122 ~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~ 179 (269)
++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 88877777543333 666777777777777776555544 55666666666666655443
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.2e-25 Score=189.21 Aligned_cols=198 Identities=19% Similarity=0.215 Sum_probs=150.8
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
+++.+....+.+..+|...|..+ ++|++|++++| .+.+..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccc-cCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45555556666777777666665 88888888888 67776666788888888888888888877777888888888888
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCCcCCch-hhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCC----EEEccC
Q 036300 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGS-MLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVT----FLDLRS 221 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~----~L~L~~ 221 (269)
+++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 888888865555788888888888888888753 577888888888888888888876666666555555 788888
Q ss_pred CccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 222 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
|.+++..+..+. ..+|++|++++|.+ ..+|...+..+++|+.|++
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQL--KSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCC--SCCCTTTTTTCCSCCEEEC
T ss_pred CcccccCccccC-CCcccEEECCCCce--eecCHhHhcccccccEEEc
Confidence 888755444444 34788888888888 4566556778888888764
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.3e-25 Score=187.30 Aligned_cols=185 Identities=22% Similarity=0.190 Sum_probs=164.2
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCc-CCCCC
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ-INGQI 156 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~ 156 (269)
+..+|..+ .++|++|++++| .+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|. ++...
T Consensus 23 l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 23 LQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred cccCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence 34556543 478999999999 7888777789999999999999999998889999999999999999997 77555
Q ss_pred ccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCC
Q 036300 157 PASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMV 236 (269)
Q Consensus 157 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 236 (269)
|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 88899999999999999999988788899999999999999999977667789999999999999999977777899999
Q ss_pred CCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 237 SLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 237 ~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+|++|++++|.+ .+..| ..+..+++|+.|++
T Consensus 178 ~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 178 SLDRLLLHQNRV-AHVHP-HAFRDLGRLMTLYL 208 (285)
T ss_dssp TCCEEECCSSCC-CEECT-TTTTTCTTCCEEEC
T ss_pred ccCEEECCCCcc-cccCH-hHccCcccccEeeC
Confidence 999999999999 44445 47889999999975
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=4.2e-25 Score=197.83 Aligned_cols=196 Identities=23% Similarity=0.248 Sum_probs=122.0
Q ss_pred ccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEc
Q 036300 68 CKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLAL 147 (269)
Q Consensus 68 l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 147 (269)
+..+....+.+..++...|.++ ++|++|+|++| .+....+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 90 L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 90 LEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp CCEEECCSSCCCEECGGGGTTC-SSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccChhhccCC-ccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 3333333344444444444443 45555555555 344333334555555555555555555433344555555555555
Q ss_pred cCCcCCCCCc-cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300 148 AGNQINGQIP-ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 148 ~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
++|...+.++ ..|..+++|++|++++|.++ .+| .+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 5533222222 24566667777777777666 334 35667778888888888877777778888888888888888887
Q ss_pred cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 227 GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
..+..|..+++|++|++++|++ ..+|...+..+++|+.|+|
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNL--TLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCC--CCCCTTTTSSCTTCCEEEC
T ss_pred EChhhhcCCCCCCEEECCCCCC--CccChhHhccccCCCEEEc
Confidence 7777888888888888888888 4566567788888888765
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-25 Score=195.87 Aligned_cols=132 Identities=20% Similarity=0.192 Sum_probs=80.1
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
+++.+....+.++.+|..+|..+ ++|++|++++| .+.+..+..|..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l-~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHC-CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEecCCchhhCChhHhccc-ccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 33333334455566666666555 66677777666 56555555666666666666666666655555566666666666
Q ss_pred ccCCcCCCCCcc-ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCC
Q 036300 147 LAGNQINGQIPA-SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201 (269)
Q Consensus 147 L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 201 (269)
+++|.++ .+|. .|..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 6666666 3333 3456666666666666666555555666666666666666554
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.9e-25 Score=206.17 Aligned_cols=197 Identities=19% Similarity=0.147 Sum_probs=118.2
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
++..+....+.++.+|..+|..+ ++|++|++++| .+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHC-CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCCCCCcCHHHHccC-CCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 33333334455666777666665 67777777777 56665555667777777777777777665555666677777777
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcC----------------------
Q 036300 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI---------------------- 204 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~---------------------- 204 (269)
+++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 7777766333334566667777777777666665656666666666666666555321
Q ss_pred -------------------------------------chhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCC
Q 036300 205 -------------------------------------PKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247 (269)
Q Consensus 205 -------------------------------------p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 247 (269)
+..+..+++|+.|+|++|.+++..|..+..+++|++|++++|.
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 1224445556666666666665556666666666666666665
Q ss_pred CCCCCCCccccccCcCCceec
Q 036300 248 IFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 248 l~~~~~p~~~~~~l~~L~~L~ 268 (269)
+ ..+|. .+..+++|+.|+
T Consensus 290 l--~~l~~-~~~~l~~L~~L~ 307 (597)
T 3oja_B 290 L--VALNL-YGQPIPTLKVLD 307 (597)
T ss_dssp C--CEEEC-SSSCCTTCCEEE
T ss_pred C--CCCCc-ccccCCCCcEEE
Confidence 5 23433 334455555554
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=6.8e-25 Score=189.39 Aligned_cols=196 Identities=18% Similarity=0.231 Sum_probs=137.0
Q ss_pred ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300 66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL 145 (269)
Q Consensus 66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 145 (269)
..++.+....+.+..+|...|..+ ++|++|++++| .+.+..|..|..+++|++|++++|.++ .+|..+. ++|++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGL-QHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCC-CCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEE
Confidence 355566666667777777666665 88889999888 687777888888888888888888888 5665554 678888
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCCcCCc--hhhhhhcCc--------------------ccCCEEeCcCCcCCCc
Q 036300 146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG--SMLLTLGKL--------------------ARLLKLDLSYNNLQEK 203 (269)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l--------------------~~L~~L~ls~n~l~~~ 203 (269)
++++|.++...+..+..+++|++|++++|.++. ..+..+..+ ++|++|++++|++++.
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI 208 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence 888888875444567777778888877777742 333333322 3566666666666655
Q ss_pred CchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 204 IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 204 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+ ..+|. .+..+++|+.|++
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~lp~-~l~~l~~L~~L~l 271 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL--SRVPA-GLPDLKLLQVVYL 271 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC--CBCCT-TGGGCTTCCEEEC
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC--eecCh-hhhcCccCCEEEC
Confidence 556667777777777777777766666777777777777777777 36665 4667777777654
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=1.4e-24 Score=187.14 Aligned_cols=195 Identities=20% Similarity=0.286 Sum_probs=130.2
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
.++.+....+.+..+|...|..+ ++|++|++++| .+.+..|..|..+++|++|++++|.++ .+|..+. ++|++|+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCeEEECCCCcCCEeChhhhccC-CCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 45555566667777777666665 88888888888 677777888888888888888888887 5565443 5666666
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCCcCCc--hhhhhhcCcc---------------------cCCEEeCcCCcCCCc
Q 036300 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSG--SMLLTLGKLA---------------------RLLKLDLSYNNLQEK 203 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~---------------------~L~~L~ls~n~l~~~ 203 (269)
+++|.+++..+..+..+++|++|++++|.+.. ..+..+..++ +|++|++++|++++.
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 207 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCcc
Confidence 66666664444455666666666666665532 2333444443 455555555555555
Q ss_pred CchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 204 IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 204 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+ ..+|. .+..+++|++|++
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~lp~-~l~~l~~L~~L~l 270 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPG-GLADHKYIQVVYL 270 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC--SSCCT-TTTTCSSCCEEEC
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC--ccCCh-hhccCCCcCEEEC
Confidence 556677777777777777777766666677777777777777777 46664 5666777777654
No 23
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=3.2e-25 Score=182.81 Aligned_cols=207 Identities=15% Similarity=0.126 Sum_probs=168.1
Q ss_pred EEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCC-ceeccCccccCCCCCCEEEccc-CC
Q 036300 50 VSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPR-LIGTIPTSIDYLKNLQSLVLLE-KG 127 (269)
Q Consensus 50 v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~-l~~~~p~~l~~l~~L~~L~L~~-n~ 127 (269)
|..-++..+|. -..++..+....+.+..+|...|..+ ++|++|++++| . +....+..|..+++|++|++++ |.
T Consensus 18 v~c~~l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 18 VTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp EEECSCSSCCC---CCTTCCEEEEESCCCSEECTTTTTTC-TTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred eEccCccccCC---CCCcccEEEEeCCcceEECHHHccCC-CCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 33333555554 22355666666677888998777776 99999999999 6 6665556899999999999998 99
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCC---EEEccCC-cCCchhhhhhcCcccCC-EEeCcCCcCCC
Q 036300 128 LTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLL---IFDLSRN-NLSGSMLLTLGKLARLL-KLDLSYNNLQE 202 (269)
Q Consensus 128 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~ls~n~l~~ 202 (269)
+++..+..|.++++|++|++++|.++ .+|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|+++.
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence 99766778999999999999999999 4776 88888998 9999999 99876667799999999 99999999984
Q ss_pred cCchhhcCCCCCCEEEccCCc-cCCcchhhhhcC-CCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 203 KIPKEIGNLHNVTFLDLRSNN-FLGGLVGSIEEM-VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 203 ~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+|......++|++|++++|+ +++..+..|..+ ++|++|++++|++ ..+|.. .+++|+.|++
T Consensus 171 -i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--~~l~~~---~~~~L~~L~l 233 (239)
T 2xwt_C 171 -VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSK---GLEHLKELIA 233 (239)
T ss_dssp -ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC--CCCCCT---TCTTCSEEEC
T ss_pred -cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc--ccCChh---HhccCceeec
Confidence 55444344899999999995 987777889999 9999999999999 567764 5667777654
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.1e-24 Score=184.88 Aligned_cols=171 Identities=22% Similarity=0.214 Sum_probs=92.1
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
+.+++|++++| .+.+..+..|..+++|++|++++|.+++. +.. ..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 31 ~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 45555555555 45554455555555555555555555532 221 45555555555555555 4555555555555555
Q ss_pred ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 250 (269)
+++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-- 184 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-- 184 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC--
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC--
Confidence 555555544444555555555555555555544444455555555555555555544444455555555555555555
Q ss_pred CCCCccccccCcCCceec
Q 036300 251 GGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 251 ~~~p~~~~~~l~~L~~L~ 268 (269)
..+|. .+..+++|+.|+
T Consensus 185 ~~ip~-~~~~~~~L~~l~ 201 (290)
T 1p9a_G 185 YTIPK-GFFGSHLLPFAF 201 (290)
T ss_dssp CCCCT-TTTTTCCCSEEE
T ss_pred CccCh-hhcccccCCeEE
Confidence 34444 333444555444
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.6e-24 Score=181.85 Aligned_cols=199 Identities=25% Similarity=0.279 Sum_probs=168.1
Q ss_pred CceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCC
Q 036300 37 QGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLK 116 (269)
Q Consensus 37 ~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~ 116 (269)
..|.|...+ + ..+|... ..+++.+....+.+..+|...|..+ ++|++|++++| .+....+..|..++
T Consensus 19 ~~l~~~~~~----l-----~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 19 NSVDCSSKK----L-----TAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDN-KLQTLPAGIFKELK 85 (270)
T ss_dssp TEEECTTSC----C-----SSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSS-CCSCCCTTTTSSCT
T ss_pred CEEEccCCC----C-----CccCCCC--CCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCC-ccCeeChhhhcCCC
Confidence 378897542 2 2333322 1355666666677888888777766 99999999999 67765555678999
Q ss_pred CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCc
Q 036300 117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196 (269)
Q Consensus 117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 196 (269)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 99999999999997666778999999999999999997777788999999999999999997666778999999999999
Q ss_pred CCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 197 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 9999987667789999999999999999987777899999999999999998
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=9.8e-25 Score=197.16 Aligned_cols=199 Identities=19% Similarity=0.185 Sum_probs=132.5
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
.+..+....+.+..++...|..+ ++|++|+|++| .+.+..|..|..+++|++|+|++|.+++..+..|.++++|++|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASF-PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTC-TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCCccceECHhHccCC-CCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 34455555566666666555555 77777777777 67766677777777777777777777754445567777777777
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
+++|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 77777776666667777777777777777766666666677777777777777765555556666666666666666665
Q ss_pred cchhhhhcCC------------------------CCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 227 GLVGSIEEMV------------------------SLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 227 ~~~~~~~~l~------------------------~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
..+..+..++ +|++|++++|.+ ..+|...+.++++|+.|++
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC--CSCCHHHHTTCTTCCEEEC
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc--cccCHHHhcCccccCeeEC
Confidence 4444444444 455555555666 3555456777888887764
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-24 Score=185.76 Aligned_cols=199 Identities=21% Similarity=0.231 Sum_probs=151.4
Q ss_pred ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCcee--ccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCC
Q 036300 66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIG--TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLR 143 (269)
Q Consensus 66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 143 (269)
.+++.+....+.+..+|..+|..+ ++|++|++++| .+.. ..+..+..+++|++|++++|.+. .+|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhcc-ccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCC
Confidence 355566666677778888777665 78888888888 5653 23556667888888888888887 4666677888888
Q ss_pred EEEccCCcCCCCCc-cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC-cCchhhcCCCCCCEEEccC
Q 036300 144 RLALAGNQINGQIP-ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRS 221 (269)
Q Consensus 144 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~ 221 (269)
+|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 88888888874433 467788888888888888877777778888888888888888875 4677778888888888888
Q ss_pred CccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 222 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
|.+++..|..+..+++|++|++++|.+ ..++...+..+++|++|++
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCC--SBCCSGGGTTCTTCCEEEC
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCcc--CccChhhccCcccCCEeEC
Confidence 888877777888888888888888888 4455446777888888765
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=193.31 Aligned_cols=207 Identities=23% Similarity=0.240 Sum_probs=174.9
Q ss_pred eCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC
Q 036300 55 IGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI 134 (269)
Q Consensus 55 l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 134 (269)
+..+|.... ..+..+....+.+..++...|..+ ++|++|+|++| .+.+..+..|..+++|++|+|++|.+++..+.
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 344554332 345566666678888888777776 99999999999 78887778999999999999999999966666
Q ss_pred CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCc-CCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCC
Q 036300 135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN-LSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHN 213 (269)
Q Consensus 135 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 213 (269)
.|..+++|++|++++|.++...+..|..+++|++|++++|+ +....+..|..+++|++|++++|+++. +|. +..+++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~ 208 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIK 208 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC-CTTCSS
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc-cCCCcc
Confidence 89999999999999999996666688999999999999955 443344578999999999999999984 564 788999
Q ss_pred CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 214 VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 214 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
|++|+|++|.+++..|..|..+++|++|++++|.+ ..++...+.++++|+.|+|
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI--QVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTSSTTCTTCCEEEC
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCce--eEEChhhhcCCCCCCEEEC
Confidence 99999999999988899999999999999999999 4555568999999999985
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.8e-24 Score=192.83 Aligned_cols=123 Identities=23% Similarity=0.227 Sum_probs=89.8
Q ss_pred EEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCcc
Q 036300 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224 (269)
Q Consensus 145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 224 (269)
|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++.+..|..+..+++|++|++++|++
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 33333333333455566677777777777777766677777778888888888888776677778888888888888888
Q ss_pred CCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 225 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++..|..+..+++|++|++++|++ ..+|...+..+++|++|++
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQL--KSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCC--SCCCTTTTTTCTTCCEEEC
T ss_pred cccChhhccccccccEEECCCCcc--ccCCHhHhccCCcccEEEc
Confidence 777777888888888888888888 4466556778888888765
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=3.5e-25 Score=203.20 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=168.6
Q ss_pred CCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceecc
Q 036300 29 DPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTI 108 (269)
Q Consensus 29 ~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~ 108 (269)
-.|.|. || ||.... .+..+|+... ..++.+....+.+..+++..|..+ ++|++|++++| .+.+..
T Consensus 2 ~~C~~~---~~-c~~~~~-------~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~i~~~~ 66 (549)
T 2z81_A 2 LSCDAS---GV-CDGRSR-------SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSS-RINTIE 66 (549)
T ss_dssp CEECTT---SE-EECTTS-------CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTS-CCCEEC
T ss_pred ccCCCC---ce-EECCCC-------ccccccccCC--CCccEEECcCCccCccChhhhhcC-CcccEEECCCC-CcCccC
Confidence 358897 87 987643 2334454322 456666666677777766555665 88999999988 788877
Q ss_pred CccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCC-CCccccCCCCCCCEEEccCCcCCchhh-hhhcC
Q 036300 109 PTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQING-QIPASIGGLTKLLIFDLSRNNLSGSML-LTLGK 186 (269)
Q Consensus 109 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~ 186 (269)
|..|..+++|++|++++|.+++..|..++++++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..
T Consensus 67 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 7888889999999999999887666668888999999999998875 356678888899999999888444554 57888
Q ss_pred cccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCC-C-CccccccCcCC
Q 036300 187 LARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGG-L-NGIRWENLQNL 264 (269)
Q Consensus 187 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~-p~~~~~~l~~L 264 (269)
+++|++|++++|++++..|..+..+++|++|++++|.+.......+..+++|++|++++|.+ .+. . +......+++|
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc-ccccccccchhhhhhcc
Confidence 88999999999998888888888888999999998887643333446789999999999999 332 1 22234457777
Q ss_pred ceecC
Q 036300 265 EIWIF 269 (269)
Q Consensus 265 ~~L~l 269 (269)
+.|++
T Consensus 226 ~~L~l 230 (549)
T 2z81_A 226 KKLAF 230 (549)
T ss_dssp CEEEE
T ss_pred cceec
Confidence 77753
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.3e-24 Score=192.97 Aligned_cols=184 Identities=20% Similarity=0.249 Sum_probs=165.5
Q ss_pred cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300 79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA 158 (269)
Q Consensus 79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 158 (269)
..+|..+ .+++++|++++| .+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|.++...+.
T Consensus 24 ~~ip~~~----~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 24 VAVPEGI----PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp SSCCSCC----CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CcCCCCC----CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 4455543 478999999999 78888888999999999999999999988899999999999999999999955556
Q ss_pred ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCC
Q 036300 159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSL 238 (269)
Q Consensus 159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 238 (269)
.|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 78999999999999999998888899999999999999999998888899999999999999999998888889999999
Q ss_pred CeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 239 KEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 239 ~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+.|++++|.+ ..++...+..+++|+.|++
T Consensus 179 ~~L~l~~n~i--~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 179 IVLRLRHLNI--NAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp CEEEEESCCC--CEECTTCSCSCTTCCEEEE
T ss_pred cEEeCCCCcC--cEeChhhcccCcccceeeC
Confidence 9999999999 4555567888999888864
No 32
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.5e-24 Score=173.79 Aligned_cols=163 Identities=21% Similarity=0.159 Sum_probs=139.9
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
.++|++|++++| .+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 468999999999 7887666678899999999999999996666678899999999999999996555668899999999
Q ss_pred EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF 249 (269)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 249 (269)
++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|++|+++.|.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~- 177 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH- 177 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHC-
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhC-
Confidence 999999997777778899999999999999997666668899999999999998874 456889999999999
Q ss_pred CCCCCccccccCc
Q 036300 250 GGGLNGIRWENLQ 262 (269)
Q Consensus 250 ~~~~p~~~~~~l~ 262 (269)
.+.+|. .++.++
T Consensus 178 ~g~ip~-~~~~l~ 189 (208)
T 2o6s_A 178 SGVVRN-SAGSVA 189 (208)
T ss_dssp TTTBBC-TTSSBC
T ss_pred Cceeec-cCcccc
Confidence 888886 555554
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.7e-23 Score=173.82 Aligned_cols=173 Identities=21% Similarity=0.261 Sum_probs=154.2
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
...++++++++ .+. .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 14 ~~~~~l~~~~~-~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGK-SLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTC-CCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCC-Ccc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 45678999998 555 5776665 6899999999999988888899999999999999999987778899999999999
Q ss_pred ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 250 (269)
+++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-- 167 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-- 167 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC--
Confidence 999999977778889999999999999999976667788999999999999999987777899999999999999999
Q ss_pred CCCCccccccCcCCceecC
Q 036300 251 GGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 251 ~~~p~~~~~~l~~L~~L~l 269 (269)
..++...+..+++|+.|++
T Consensus 168 ~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp SCCCTTTTTTCTTCCEEEC
T ss_pred CccCHHHHhCCCCCCEEEe
Confidence 4566567889999999875
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.7e-23 Score=174.59 Aligned_cols=161 Identities=28% Similarity=0.321 Sum_probs=137.8
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
+++|++|++++| .+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 62 l~~L~~L~l~~n-~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGN-KLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTS-CCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCC-CCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 488999999999 6765 3 478889999999999999997777778899999999999999996666678889999999
Q ss_pred EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF 249 (269)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 249 (269)
++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~- 217 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW- 217 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc-
Confidence 9999999877777788899999999999999877667778899999999999999988887888999999999999988
Q ss_pred CCCCC
Q 036300 250 GGGLN 254 (269)
Q Consensus 250 ~~~~p 254 (269)
.+..|
T Consensus 218 ~~~~~ 222 (272)
T 3rfs_A 218 DCTCP 222 (272)
T ss_dssp CCCTT
T ss_pred cccCc
Confidence 55444
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.2e-23 Score=195.20 Aligned_cols=136 Identities=20% Similarity=0.169 Sum_probs=67.5
Q ss_pred cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCE
Q 036300 65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRR 144 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 144 (269)
+.+++.+....+.+..+++..|.++ ++|++|++++| .+.+..|..|+.+++|++|++++|.+++..+..+.++++|++
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQ-HRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred CccceEEECCCCccceeChhhccCc-cccCeeeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 3334444444344444433333333 55555555555 444444555555555555555555555433444555555555
Q ss_pred EEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC--EEeCcCCcCCC
Q 036300 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL--KLDLSYNNLQE 202 (269)
Q Consensus 145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~ls~n~l~~ 202 (269)
|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+.+
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 55555555532222233355555555555555555555555555555 55555555544
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=9.9e-25 Score=189.92 Aligned_cols=205 Identities=21% Similarity=0.202 Sum_probs=162.9
Q ss_pred CCCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceec
Q 036300 28 PDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGT 107 (269)
Q Consensus 28 ~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~ 107 (269)
...|.|. |+ |+..++ .+..+|.... .++..+....+.+..+|...+..+ ++|++|++++| .+.+.
T Consensus 27 ~~~C~~~---~~-c~~~~~-------~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~ 91 (353)
T 2z80_A 27 SLSCDRN---GI-CKGSSG-------SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSN-GINTI 91 (353)
T ss_dssp CCEECTT---SE-EECCST-------TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTS-CCCEE
T ss_pred CCCCCCC---eE-eeCCCC-------Cccccccccc--ccCcEEECCCCcCcccCHHHhccC-CCCCEEECCCC-ccCcc
Confidence 3789996 77 876543 2334444322 356667777777888888766665 89999999999 78887
Q ss_pred cCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc--ccCCCCCCCEEEccCC-cCCchhhhhh
Q 036300 108 IPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA--SIGGLTKLLIFDLSRN-NLSGSMLLTL 184 (269)
Q Consensus 108 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n-~l~~~~~~~~ 184 (269)
.|..|..+++|++|++++|.+++..+..+.++++|++|++++|.++ .+|. .+..+++|++|++++| .+....+..+
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 7778999999999999999998544444888999999999999998 5554 6888999999999998 4665566788
Q ss_pred cCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 185 GKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 185 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
..+++|++|++++|++.+..|..+..+++|++|++++|.++......+..+++|++|++++|.+
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 8899999999999999888888899999999999999998755444566789999999999998
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.4e-23 Score=174.03 Aligned_cols=173 Identities=26% Similarity=0.307 Sum_probs=153.5
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
+++|+.|++++| .+.. ++ .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~-~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKS-VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCC-Cccc-cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 489999999999 5553 33 58899999999999999985 3 478999999999999999997777778999999999
Q ss_pred EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF 249 (269)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 249 (269)
++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l- 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL- 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-
Confidence 9999999977777889999999999999999987777789999999999999999988888889999999999999999
Q ss_pred CCCCCccccccCcCCceecC
Q 036300 250 GGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 250 ~~~~p~~~~~~l~~L~~L~l 269 (269)
. .++...+..+++|+.|++
T Consensus 194 ~-~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 194 K-SVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp S-CCCTTTTTTCTTCCEEEC
T ss_pred C-ccCHHHHhCCcCCCEEEc
Confidence 4 455557889999999875
No 38
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9.8e-24 Score=177.46 Aligned_cols=183 Identities=23% Similarity=0.234 Sum_probs=157.2
Q ss_pred cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300 79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA 158 (269)
Q Consensus 79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 158 (269)
.++|..+ .++|++|++++| .+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 20 ~~ip~~l----~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 20 YKIPDNL----PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp SSCCSSS----CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred cccCCCC----CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 3455543 468999999999 78887777899999999999999999977777899999999999999999977778
Q ss_pred ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCc-CchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300 159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEK-IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS 237 (269)
Q Consensus 159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 237 (269)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. +|..+..+++|++|++++|++++..+..+..+.+
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 899999999999999999977666799999999999999999873 6889999999999999999999877778877777
Q ss_pred CC----eEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 238 LK----EMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 238 L~----~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
|+ +|++++|.+ ..++...+ ...+|+.|++
T Consensus 175 L~~l~l~L~ls~n~l--~~~~~~~~-~~~~L~~L~L 207 (276)
T 2z62_A 175 MPLLNLSLDLSLNPM--NFIQPGAF-KEIRLKELAL 207 (276)
T ss_dssp CTTCCEEEECCSSCC--CEECTTSS-CSCCEEEEEC
T ss_pred ccccceeeecCCCcc--cccCcccc-CCCcccEEEC
Confidence 77 899999999 55655344 3447887764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.4e-23 Score=183.49 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=85.1
Q ss_pred ccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCC
Q 036300 64 VCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLR 143 (269)
Q Consensus 64 ~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 143 (269)
.+.+++.+....+.+..+|...|..+ ++|++|++++| .+.+..|..+..+++|++|++++|.++...+..+.++++|+
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccccCcEEECCCCcccccChhhccCC-CCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 34556666666677777777666665 88888888888 67777677788888888888888888843333467888888
Q ss_pred EEEccCCcCCCCCccccCCCCCCCEEEccCCcCCc
Q 036300 144 RLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG 178 (269)
Q Consensus 144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 178 (269)
+|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 88888888886666677888888888888887764
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=2.9e-23 Score=192.61 Aligned_cols=175 Identities=19% Similarity=0.169 Sum_probs=126.0
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
++|++|++++| .+.+..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|..+..+++|++|
T Consensus 376 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 376 SHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp TTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 66666666666 566666666666677777777777766554433 6677777777777777776666677777777777
Q ss_pred EccCCcCCch---hhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCC
Q 036300 170 DLSRNNLSGS---MLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN 246 (269)
Q Consensus 170 ~l~~n~l~~~---~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 246 (269)
++++|.+++. .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..++.| +|++++|
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 7777777652 22456777788888888888877777778888888888888888887778888888888 8888888
Q ss_pred CCCCCCCCccccccCcCCceecC
Q 036300 247 PIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 247 ~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.+ . .++...+..+++|+.|++
T Consensus 534 ~l-~-~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 534 HI-S-IILPSLLPILSQQRTINL 554 (606)
T ss_dssp CC-C-CCCGGGHHHHHTSSEEEC
T ss_pred cc-c-ccCHhhcccCCCCCEEeC
Confidence 88 4 344446777888887764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.5e-23 Score=193.15 Aligned_cols=199 Identities=19% Similarity=0.175 Sum_probs=138.3
Q ss_pred cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCE
Q 036300 65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRR 144 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 144 (269)
+..+..+....+.+..+|...|..+ ++|++|+|++| .+.+..|..|+.+++|++|+|++|.+++..+..|.++++|++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCC-CCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 4455555555566666766555554 77888888877 677766666777777888888887777444444677777777
Q ss_pred EEccCCcCCCCCccccCCCCCCCEEEccCCcCCchh--------------------------------------------
Q 036300 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSM-------------------------------------------- 180 (269)
Q Consensus 145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-------------------------------------------- 180 (269)
|++++|.+++..|..|..+++|++|++++|.+++..
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 777777777666666777777777777777665321
Q ss_pred ---------------hhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccC
Q 036300 181 ---------------LLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSN 245 (269)
Q Consensus 181 ---------------~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 245 (269)
+..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|++|++++
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence 1235566778888888888887777778888888888888888774 455566677777888887
Q ss_pred CCCCCCCCCccccccCcCCceecC
Q 036300 246 NPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 246 N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
|.+ ..+|. .+..+++|++|++
T Consensus 311 N~l--~~i~~-~~~~l~~L~~L~L 331 (597)
T 3oja_B 311 NHL--LHVER-NQPQFDRLENLYL 331 (597)
T ss_dssp SCC--CCCGG-GHHHHTTCSEEEC
T ss_pred CCC--CccCc-ccccCCCCCEEEC
Confidence 777 35664 4566666666654
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=2.8e-23 Score=195.33 Aligned_cols=143 Identities=23% Similarity=0.184 Sum_probs=103.8
Q ss_pred ccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCC
Q 036300 64 VCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLR 143 (269)
Q Consensus 64 ~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 143 (269)
.+.+++.+....+.+..+++..|.++ ++|++|++++| .+.+..+..|+.+++|++|++++|.+++..|..|+++++|+
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 45556666666566666666666665 78888888888 56654444678888888888888888766667788888888
Q ss_pred EEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhc--CcccCCEEeCcCCcCCCcCchhh
Q 036300 144 RLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG--KLARLLKLDLSYNNLQEKIPKEI 208 (269)
Q Consensus 144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~ls~n~l~~~~p~~~ 208 (269)
+|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|+.|++++|++++..|..+
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh
Confidence 888888888777777777888888888888888766666554 44778888888888776555443
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.7e-23 Score=194.23 Aligned_cols=198 Identities=20% Similarity=0.164 Sum_probs=164.5
Q ss_pred cccccccCCCCCCCccc---CchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCC-CCCCCCC
Q 036300 65 CSQCKIFKPPLQSPIEI---PSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP-IEPSKLV 140 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~l---p~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~ 140 (269)
+.++..+....+.+..+ |..+ .. +++|++|++++| .+.+ +|..+..+++|+.|++++|.+.+..| ..+..++
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~-~~-~~~L~~L~L~~n-~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSD-LG-TNSLRHLDLSFN-GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHH-HC-CSCCCEEECCSC-SEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred CCCCCEEECcCCccCCCcchhhhh-cc-CCcccEeECCCC-cccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 33444444444554444 4443 44 488999999998 5555 66788899999999999999987777 6788999
Q ss_pred CCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEc
Q 036300 141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219 (269)
Q Consensus 141 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 219 (269)
+|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|..+..+++|++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 99999999999998888889999999999999999987 36888899999999999999999888888999999999999
Q ss_pred cCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCc-CCceecC
Q 036300 220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQ-NLEIWIF 269 (269)
Q Consensus 220 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~-~L~~L~l 269 (269)
++|++++..|..+..+++|++|++++|++ ..+|. .+..++ +|++|++
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l--~~~p~-~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRI--ETSKG-ILQHFPKSLAFFNL 552 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCC--CCEES-CGGGSCTTCCEEEC
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcC--cccCH-hHhhhcccCcEEEc
Confidence 99999988899999999999999999999 47886 477886 5888875
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=6.5e-23 Score=176.74 Aligned_cols=230 Identities=15% Similarity=0.150 Sum_probs=133.0
Q ss_pred CCCCCCCCCCCCCCCCCCCceEeecCCC-------ceEEEEEEeC-----CCCCC-CcccccccccCCCCCCCcccCchh
Q 036300 19 KWWNGSDLYPDPFGRTGLQGVSCDFFHG-------LWHVSAISIG-----PVYDN-SLVCSQCKIFKPPLQSPIEIPSSN 85 (269)
Q Consensus 19 ~~W~~~~~~~~~C~~~~~~gv~C~~~~~-------~~~v~~l~l~-----~~~~~-~~~~~~l~~~~~~~~~~~~lp~~~ 85 (269)
..|....+.+..|.+. .+.|...+- ...++.+++. .+++. ...+.+++.+....+.+..+++..
T Consensus 19 ~~~~~~cp~~c~c~l~---~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 19 EPMGPVCPFRCQCHLR---VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ---CCCCCTTCEEETT---EEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred ccccCCCCCCCcCCCe---EEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 4565554434556676 788853210 0134556652 22221 223445555555545455553333
Q ss_pred HHhhcCCccEEEccCCC--------------------CceeccCccccCCCCCCEEEcccCCCCC--CCCCCCCCCCCCC
Q 036300 86 WQKLANSLDSLEFGSNP--------------------RLIGTIPTSIDYLKNLQSLVLLEKGLTG--KLPIEPSKLVNLR 143 (269)
Q Consensus 86 ~~~l~~~L~~L~l~~n~--------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~ 143 (269)
|..+ ++|++|++++|. .+.+..+..+..+++|++|++++|.+.. ..+..+.++++|+
T Consensus 96 ~~~l-~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 96 FAPL-VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTTC-TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred hcCC-CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 3333 555555555551 2333223345566666666666666642 4455566666777
Q ss_pred EEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCc
Q 036300 144 RLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN 223 (269)
Q Consensus 144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 223 (269)
+|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.
T Consensus 175 ~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 175 YIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred EEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 7777776666 4454332 567777777777766666677777777777777777776656667777777777777777
Q ss_pred cCCcchhhhhcCCCCCeEEccCCCCCCCCCCcccc
Q 036300 224 FLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRW 258 (269)
Q Consensus 224 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~ 258 (269)
++ .+|..+..+++|++|++++|++ ..++...|
T Consensus 252 l~-~lp~~l~~l~~L~~L~l~~N~i--~~~~~~~f 283 (330)
T 1xku_A 252 LV-KVPGGLADHKYIQVVYLHNNNI--SAIGSNDF 283 (330)
T ss_dssp CS-SCCTTTTTCSSCCEEECCSSCC--CCCCTTSS
T ss_pred Cc-cCChhhccCCCcCEEECCCCcC--CccChhhc
Confidence 76 5666677777777777777777 44443333
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=3.1e-24 Score=183.87 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=80.6
Q ss_pred CCccEEEccCCCCceeccCccc--cCCCCCCEEEcccCCCCCCCCCCCCCC-----CCCCEEEccCCcCCCCCccccCCC
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSI--DYLKNLQSLVLLEKGLTGKLPIEPSKL-----VNLRRLALAGNQINGQIPASIGGL 163 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l 163 (269)
++|++|++++| .+.+.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..+..+
T Consensus 95 ~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 45555555555 4554455443 4555555555555555533 4444433 455555555555544333444555
Q ss_pred CCCCEEEccCCcCCch--hhhhh--cCc---------------------------ccCCEEeCcCCcCCCcCc-hhhcCC
Q 036300 164 TKLLIFDLSRNNLSGS--MLLTL--GKL---------------------------ARLLKLDLSYNNLQEKIP-KEIGNL 211 (269)
Q Consensus 164 ~~L~~L~l~~n~l~~~--~~~~~--~~l---------------------------~~L~~L~ls~n~l~~~~p-~~~~~l 211 (269)
++|++|++++|++.+. .+..+ ..+ ++|++|++++|++++..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555544432 12222 344 455555555555544332 223334
Q ss_pred CCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++|++|++++|.++ .+|..+. ++|++|++++|++ ..+|. +..+++|++|++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l--~~~p~--~~~l~~L~~L~L 303 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL--DRNPS--PDELPQVGNLSL 303 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC--CSCCC--TTTSCEEEEEEC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC--CCChh--HhhCCCCCEEec
Confidence 45555555555554 3343333 4555555555555 22232 455555555543
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=5.9e-24 Score=197.30 Aligned_cols=198 Identities=19% Similarity=0.207 Sum_probs=131.9
Q ss_pred ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300 66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL 145 (269)
Q Consensus 66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 145 (269)
..++.+....+.+..+|...|.++ ++|++|++++| .+.+..|..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCC-ccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 344555555566666666555555 77777777777 6766666677777777777777777776667777777777777
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC----CEEEcc
Q 036300 146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV----TFLDLR 220 (269)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L----~~L~L~ 220 (269)
++++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|++++..|..++.+++| .+|+++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 777777775555667777777777777777764 457777777777777777777776666655554444 367777
Q ss_pred CCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300 221 SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW 267 (269)
Q Consensus 221 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L 267 (269)
+|.+++..+..+... +|++|++++|.+ .+......+.++++|+.+
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~l 234 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFN-SSNIMKTCLQNLAGLHVH 234 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCS-CHHHHHHHHHTTTTCEEE
T ss_pred CCCcceeCcccccCc-eeeeeeccCCcc-chhHHHHHhccccccccc
Confidence 777775544444443 777777777777 322222345555555543
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=5.3e-23 Score=184.80 Aligned_cols=183 Identities=20% Similarity=0.202 Sum_probs=144.0
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP 157 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 157 (269)
+.++|..+ .+++++|+|++| .+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.++...+
T Consensus 66 l~~iP~~~----~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 66 LSEVPQGI----PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CSSCCSCC----CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred cCccCCCC----CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh
Confidence 44566544 478999999999 7998888999999999999999999998888899999999999999999996666
Q ss_pred cccCCCCCCCEEEccCCcCCchhhhhhc-------------------------CcccCCEEeCcCCcCCCcCchhhcCCC
Q 036300 158 ASIGGLTKLLIFDLSRNNLSGSMLLTLG-------------------------KLARLLKLDLSYNNLQEKIPKEIGNLH 212 (269)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~-------------------------~l~~L~~L~ls~n~l~~~~p~~~~~l~ 212 (269)
..|..+++|++|++++|.++...+..|. .+++|++|++++|++++ +| .+..++
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~ 218 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLV 218 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCT
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccc
Confidence 6789999999999999998854443444 44555555555565553 33 355667
Q ss_pred CCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 213 NVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 213 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+|++|++++|.+++..|..|..+++|++|++++|.+ ..++...+..+++|+.|+|
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV--SLIERNAFDGLASLVELNL 273 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEEC
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcC--ceECHHHhcCCCCCCEEEC
Confidence 777777777777777777888888888888888888 3444446778888888765
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.8e-22 Score=171.26 Aligned_cols=177 Identities=21% Similarity=0.171 Sum_probs=155.6
Q ss_pred ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300 66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL 145 (269)
Q Consensus 66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 145 (269)
..+..+....+.++.++...|..+ ++|++|++++| .+.+..+ ...+++|++|++++|.++ .+|..+..+++|++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL 105 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCC-ccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEE
Confidence 455666667777888887777776 99999999999 6776433 378999999999999999 788899999999999
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccC
Q 036300 146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFL 225 (269)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 225 (269)
++++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 99999999666678999999999999999999777777889999999999999999765566788999999999999998
Q ss_pred CcchhhhhcCCCCCeEEccCCCC
Q 036300 226 GGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 226 ~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
.+|..+....+|+.+++++|++
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCB
T ss_pred -ccChhhcccccCCeEEeCCCCc
Confidence 6777888889999999999998
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1e-24 Score=203.87 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=19.6
Q ss_pred cCcccc--CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCc
Q 036300 108 IPTSID--YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151 (269)
Q Consensus 108 ~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 151 (269)
+|+.++ ++++|++|++++|.+.+.+|..++++++|++|++++|+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 444444 44444444444444444444444444444444444444
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=8.5e-23 Score=176.22 Aligned_cols=182 Identities=16% Similarity=0.191 Sum_probs=150.5
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP 157 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 157 (269)
+..+|..+ .++|++|++++| .+.+..|..|..+++|++|++++|.+++..|..+.++++|++|++++|.++ .+|
T Consensus 45 l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~ 118 (332)
T 2ft3_A 45 LKAVPKEI----SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP 118 (332)
T ss_dssp CSSCCSCC----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCC
T ss_pred ccccCCCC----CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccC
Confidence 34566554 378999999999 788877889999999999999999999888899999999999999999999 777
Q ss_pred cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC--cCchhhcCC--------------------CCCC
Q 036300 158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE--KIPKEIGNL--------------------HNVT 215 (269)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~l--------------------~~L~ 215 (269)
..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++. ..|..+..+ ++|+
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~ 196 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCS
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCC
Confidence 6655 899999999999997767779999999999999999853 444444433 4677
Q ss_pred EEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 216 FLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 216 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+|++++|.+++..+..+..+++|++|++++|.+ ..++...+..+++|++|++
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC--CCCCTTGGGGCTTCCEEEC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcC--CcCChhHhhCCCCCCEEEC
Confidence 777777777777777888889999999999998 4454447888899988875
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=2e-23 Score=171.98 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=153.8
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCC-CCCCCCCCCCCCCCCCEEEccC-CcCCCC
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKG-LTGKLPIEPSKLVNLRRLALAG-NQINGQ 155 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~ 155 (269)
+.++|. + .++|++|++++| .+.+..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |.++..
T Consensus 23 l~~ip~-~----~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQRIPS-L----PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CSSCCC-C----CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccccCC-C----CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 345555 2 468999999999 7887777789999999999999997 8866666899999999999999 999965
Q ss_pred CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC---EEeCcCC-cCCCcCchhhcCCCCCC-EEEccCCccCCcchh
Q 036300 156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL---KLDLSYN-NLQEKIPKEIGNLHNVT-FLDLRSNNFLGGLVG 230 (269)
Q Consensus 156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~~~ 230 (269)
.+..|..+++|++|++++|.+++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ +|++++|+++...+.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 56788999999999999999985 665 88888888 9999999 99876667799999999 999999999944444
Q ss_pred hhhcCCCCCeEEccCCC-CCCCCCCccccccC-cCCceecC
Q 036300 231 SIEEMVSLKEMVVSNNP-IFGGGLNGIRWENL-QNLEIWIF 269 (269)
Q Consensus 231 ~~~~l~~L~~L~l~~N~-l~~~~~p~~~~~~l-~~L~~L~l 269 (269)
.+.. ++|++|++++|+ + ..++...+..+ ++|+.|++
T Consensus 175 ~~~~-~~L~~L~L~~n~~l--~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYL--TVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp TTTT-CEEEEEECTTCTTC--CEECTTTTTTCSBCCSEEEC
T ss_pred hcCC-CCCCEEEcCCCCCc--ccCCHHHhhccccCCcEEEC
Confidence 4554 899999999995 8 57776688899 99999875
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=7.7e-23 Score=196.90 Aligned_cols=117 Identities=26% Similarity=0.301 Sum_probs=86.7
Q ss_pred cccccccccCCCCC-CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCC--CCCC
Q 036300 63 LVCSQCKIFKPPLQ-SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE--PSKL 139 (269)
Q Consensus 63 ~~~~~l~~~~~~~~-~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l 139 (269)
..+.++..+..+.+ ..+.+++..|.++ ++|++|+|++| .+.+..|..|..+++|++|++++|.+++..|.. +.++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 34455555555544 6677866666665 88888888888 788877888888888888888888888766554 7888
Q ss_pred CCCCEEEccCCcCCCCCc-cccCCCCCCCEEEccCCcCCchhh
Q 036300 140 VNLRRLALAGNQINGQIP-ASIGGLTKLLIFDLSRNNLSGSML 181 (269)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~ 181 (269)
++|++|++++|.+++..+ ..|.++++|++|++++|.+++..+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 888888888888875544 467788888888888887755433
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2.6e-23 Score=178.14 Aligned_cols=194 Identities=16% Similarity=0.126 Sum_probs=158.0
Q ss_pred ccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCc-eeccCcccc-------CCCCCCEEEcccCCCCCCCCCCC--C
Q 036300 68 CKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRL-IGTIPTSID-------YLKNLQSLVLLEKGLTGKLPIEP--S 137 (269)
Q Consensus 68 l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~~--~ 137 (269)
+..+....+.. .+|..+.. .|++|++++| .+ ...+|..+. .+++|++|++++|.+++.+|..+ .
T Consensus 45 L~~l~l~~n~l-~~p~~~~~----~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTD----IIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHH----HHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred ceeEeeccccc-ccHHHHHH----HHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 33333333445 78887644 3899999999 67 456776665 78999999999999999999886 8
Q ss_pred CCCCCCEEEccCCcCCCCCccccCCC-----CCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCc--Cchhh--
Q 036300 138 KLVNLRRLALAGNQINGQIPASIGGL-----TKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEK--IPKEI-- 208 (269)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~--~p~~~-- 208 (269)
.+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. .|..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 999999999999999966 8777766 8999999999999988889999999999999999998765 34444
Q ss_pred cCCCCCCEEEccCCccCC---cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 209 GNLHNVTFLDLRSNNFLG---GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 209 ~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
..+++|++|++++|++++ .....+..+++|++|++++|.+ .+..|...+..+++|++|++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL-RDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC-CSSCCCSCCCCCTTCCEEEC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC-CcccchhhhhhcCCCCEEEC
Confidence 789999999999999984 2224556889999999999999 66555446777899998875
No 54
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=2.9e-22 Score=184.60 Aligned_cols=106 Identities=22% Similarity=0.252 Sum_probs=65.5
Q ss_pred ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300 66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL 145 (269)
Q Consensus 66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 145 (269)
.+++.+....+.+..+|...|..+ ++|++|++++| .+.+..|..|..+++|++|++++|.++ .+|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred CCcCEEECCCCCccccChhhhccC-CCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence 445555555566666666555554 67777777777 566666666777777777777777666 45544 56666666
Q ss_pred EccCCcCCC-CCccccCCCCCCCEEEccCCcC
Q 036300 146 ALAGNQING-QIPASIGGLTKLLIFDLSRNNL 176 (269)
Q Consensus 146 ~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l 176 (269)
++++|.+++ .+|..|.++++|++|++++|.+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 666666653 2335555566665555555544
No 55
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.89 E-value=2.3e-22 Score=164.81 Aligned_cols=145 Identities=22% Similarity=0.181 Sum_probs=127.7
Q ss_pred cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300 79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA 158 (269)
Q Consensus 79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 158 (269)
+++|..+ .++|++|++++| .+.+..|..|..+++|++|+|++|+++...+..|..+++|++|+|++|.+++..+.
T Consensus 32 ~~ip~~~----~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 32 ASVPAGI----PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp SSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCC----CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 4455543 478999999999 79888888999999999999999999865556789999999999999999966666
Q ss_pred ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300 159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 229 (269)
.|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....+
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7899999999999999999 778889999999999999999997666778999999999999999986543
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=183.97 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=66.8
Q ss_pred cCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC--cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCc
Q 036300 185 GKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG--GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQ 262 (269)
Q Consensus 185 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~ 262 (269)
..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+ .+.+|...+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l-~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC-BCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC-CcccccchhccCc
Confidence 456778888888888887778888888888888888888886 5567788888888899988888 5557765677778
Q ss_pred CCceecC
Q 036300 263 NLEIWIF 269 (269)
Q Consensus 263 ~L~~L~l 269 (269)
+|+.|++
T Consensus 400 ~L~~L~L 406 (520)
T 2z7x_B 400 SLLSLNM 406 (520)
T ss_dssp TCCEEEC
T ss_pred cCCEEEC
Confidence 8887764
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=3.3e-22 Score=187.95 Aligned_cols=187 Identities=26% Similarity=0.265 Sum_probs=86.5
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccC-ccccCCCCCCEEEcccCCCCCCC------------------------
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP-TSIDYLKNLQSLVLLEKGLTGKL------------------------ 132 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~------------------------ 132 (269)
+..+++..|..+ ++|++|++++| .+.+.+| ..+..+++|++|++++|.+.+..
T Consensus 393 l~~~~~~~~~~l-~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 393 ISKIESDAFSWL-GHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp CCEECTTTTTTC-TTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CCeEChhhhhCC-CCCCEEeCCCC-cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence 333333333333 55666666655 4554444 34555555555555555554433
Q ss_pred --CCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhh--------hhhcCcccCCEEeCcCCcCCC
Q 036300 133 --PIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSML--------LTLGKLARLLKLDLSYNNLQE 202 (269)
Q Consensus 133 --p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~ls~n~l~~ 202 (269)
|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|+++.
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 550 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence 3444444444444444444443333344444445555555544442211 113444455555555555543
Q ss_pred cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccc-cCcCCceec
Q 036300 203 KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWE-NLQNLEIWI 268 (269)
Q Consensus 203 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~-~l~~L~~L~ 268 (269)
..+..|..+++|++|++++|++++..+..|..+++|++|++++|++ ..++...+. .+++|+.|+
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI--TSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC--CBCCHHHHHHHHTTCSEEE
T ss_pred CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC--CccChhHhcccccccCEEE
Confidence 2223344555555555555555544444444455555555555555 223322333 344444443
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.1e-22 Score=188.93 Aligned_cols=170 Identities=25% Similarity=0.266 Sum_probs=144.3
Q ss_pred cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300 79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA 158 (269)
Q Consensus 79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 158 (269)
.+||..+ ++++++|||++| .+.+..+..|..+++|++|+|++|++++..+.+|.++++|++|+|++|++++..+.
T Consensus 44 ~~vP~~l----p~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 44 YKIPDNL----PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp SSCCSSS----CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CccCCCC----CcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 4556543 578999999999 78887777899999999999999999977777899999999999999999965567
Q ss_pred ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC-cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300 159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS 237 (269)
Q Consensus 159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 237 (269)
.|.++++|++|++++|++++..+..|+.+++|++|++++|++++ ..|..++.+++|++|++++|++++..+..+..+.+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 78999999999999999997666779999999999999999976 46788889999999999999999888877766544
Q ss_pred C----CeEEccCCCCCCCCCCc
Q 036300 238 L----KEMVVSNNPIFGGGLNG 255 (269)
Q Consensus 238 L----~~L~l~~N~l~~~~~p~ 255 (269)
+ ..++++.|.+ ..++.
T Consensus 199 l~~~~~~~~ls~n~l--~~i~~ 218 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPM--NFIQP 218 (635)
T ss_dssp CTTCCCEEECTTCCC--CEECT
T ss_pred hhhhhhhhhcccCcc--cccCc
Confidence 4 4688888988 44443
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.3e-22 Score=183.90 Aligned_cols=193 Identities=20% Similarity=0.177 Sum_probs=143.5
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC------------
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI------------ 134 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------ 134 (269)
++..+....+.+..+|+..|..+ ++|++|+|++| .+.+..| +..+++|++|++++|.+++..+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 45555555566666666555555 77888888877 6666544 67777777777777766532110
Q ss_pred ----CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhc-CcccCCEEeCcCCcCCCcCchhhc
Q 036300 135 ----EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG-KLARLLKLDLSYNNLQEKIPKEIG 209 (269)
Q Consensus 135 ----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~ 209 (269)
....+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. |. ..
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~ 188 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QV 188 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cc
Confidence 012356788888888888877777888888999999999999887777775 688999999999998864 33 34
Q ss_pred CCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 210 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.+++|++|+|++|.+++.. ..+..+++|+.|++++|.+ ..+|. .+..+++|+.|++
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l--~~lp~-~l~~l~~L~~L~l 244 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKL--VLIEK-ALRFSQNLEHFDL 244 (487)
T ss_dssp CCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCC--CEECT-TCCCCTTCCEEEC
T ss_pred cCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcC--cccch-hhccCCCCCEEEc
Confidence 6889999999999998644 4588899999999999999 45775 5778888988875
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=3.6e-22 Score=192.24 Aligned_cols=181 Identities=23% Similarity=0.237 Sum_probs=94.0
Q ss_pred cCCCCCCCcccCchhHHhhcCCccEEEccCCCCceecc-CccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccC
Q 036300 71 FKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTI-PTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG 149 (269)
Q Consensus 71 ~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 149 (269)
+..+.+.+..+++..|..+ ++|++|++++| ...+.+ |..|..+++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus 29 LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFL-EQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp EEEESCCCCEECSSSCSSC-CSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred EECCCCcCCccChhHCccc-ccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 3333344444443333443 55555555555 333333 44555555555555555555555555555555555555555
Q ss_pred CcCCCCCccc--cCCCCCCCEEEccCCcCCchhh-hhhcCcccCCEEeCcCCcCCCcCchhhcCC--CCCCEEEccCCcc
Q 036300 150 NQINGQIPAS--IGGLTKLLIFDLSRNNLSGSML-LTLGKLARLLKLDLSYNNLQEKIPKEIGNL--HNVTFLDLRSNNF 224 (269)
Q Consensus 150 n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l--~~L~~L~L~~N~l 224 (269)
|.+++.+|.. +..+++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|++++|.+
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence 5555444433 5555555555555555554332 345555555555555555555555555444 5555555555555
Q ss_pred CCcchhhhhcCCC------CCeEEccCCCCCCCCCC
Q 036300 225 LGGLVGSIEEMVS------LKEMVVSNNPIFGGGLN 254 (269)
Q Consensus 225 ~~~~~~~~~~l~~------L~~L~l~~N~l~~~~~p 254 (269)
.+..|..+..+.+ |++|++++|.+ .+.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~ 221 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGW-TVDIT 221 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCS-STTTT
T ss_pred ccccccchhhcCCccccCceeEEecCCCcC-chhHH
Confidence 5544444443333 55666666655 44444
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.2e-21 Score=167.41 Aligned_cols=163 Identities=23% Similarity=0.330 Sum_probs=121.1
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
+++|++|++++| .+.+. +. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|
T Consensus 62 l~~L~~L~L~~n-~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 62 LNNLIGLELKDN-QITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVL 134 (308)
T ss_dssp CTTCCEEECCSS-CCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred cCCCCEEEccCC-cCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEE
Confidence 378888888888 56553 33 7788888888888888774 33 57788888888888888874 443 7788888888
Q ss_pred EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF 249 (269)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 249 (269)
++++|.+++..+ +..+++|+.|++++|++++ ++. +..+++|+.|++++|.+++..+ +..+++|++|++++|++
T Consensus 135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l- 207 (308)
T 1h6u_A 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI- 207 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCC-
T ss_pred ECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCcc-
Confidence 888888875433 7777888888888888875 343 7788888888888888875443 77788888888888888
Q ss_pred CCCCCccccccCcCCceecC
Q 036300 250 GGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 250 ~~~~p~~~~~~l~~L~~L~l 269 (269)
..++ .+..+++|+.|++
T Consensus 208 -~~~~--~l~~l~~L~~L~l 224 (308)
T 1h6u_A 208 -SDVS--PLANTSNLFIVTL 224 (308)
T ss_dssp -CBCG--GGTTCTTCCEEEE
T ss_pred -Cccc--cccCCCCCCEEEc
Confidence 4444 2677888887764
No 62
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=5.1e-23 Score=197.38 Aligned_cols=179 Identities=22% Similarity=0.249 Sum_probs=151.9
Q ss_pred cCchhHHhhcCCccEEEccCCCCcee-----------------ccCcccc--CCCCCCEEEcccCCCCCCCCCCCCCCCC
Q 036300 81 IPSSNWQKLANSLDSLEFGSNPRLIG-----------------TIPTSID--YLKNLQSLVLLEKGLTGKLPIEPSKLVN 141 (269)
Q Consensus 81 lp~~~~~~l~~~L~~L~l~~n~~l~~-----------------~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 141 (269)
||..+ .++ ++|++|+|++| .+.+ .+|+.++ .+++|++|+|++|.+.+.+|..++++++
T Consensus 440 IP~~l-~~L-~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAI-QRL-TKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp ECGGG-GGC-TTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred hhHHH-hcC-CCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 89875 444 99999999999 7888 3898887 9999999999999999999999999999
Q ss_pred CCEEEccCCc-CCC-CCccccCCC-------CCCCEEEccCCcCCchhhh--hhcCcccCCEEeCcCCcCCCcCchhhcC
Q 036300 142 LRRLALAGNQ-ING-QIPASIGGL-------TKLLIFDLSRNNLSGSMLL--TLGKLARLLKLDLSYNNLQEKIPKEIGN 210 (269)
Q Consensus 142 L~~L~L~~n~-l~~-~~p~~l~~l-------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 210 (269)
|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .+..+++|+.|++++|+++ .+| .++.
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~ 593 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT 593 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC
Confidence 9999999998 887 788765544 49999999999998 7887 8999999999999999998 678 7889
Q ss_pred CCCCCEEEccCCccCCcchhhhhcCCC-CCeEEccCCCCCCCCCCccccccCcC--CceecC
Q 036300 211 LHNVTFLDLRSNNFLGGLVGSIEEMVS-LKEMVVSNNPIFGGGLNGIRWENLQN--LEIWIF 269 (269)
Q Consensus 211 l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~p~~~~~~l~~--L~~L~l 269 (269)
+++|+.|++++|.++ .+|..+..+++ |++|++++|.+ ..+|. .+..++. |+.|++
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L--~~lp~-~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL--KYIPN-IFNAKSVYVMGSVDF 651 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC--CSCCS-CCCTTCSSCEEEEEC
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC--CcCch-hhhccccCCCCEEEC
Confidence 999999999999998 78888888888 99999999998 37774 4544433 666553
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=184.53 Aligned_cols=177 Identities=20% Similarity=0.230 Sum_probs=121.5
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
.++.+..+.+.+..++...|.++ ++|++|++++| .+.+..+..|..+++|++|++++|.+++..|..|.++++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCC-CCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 34445555555666666555554 77777777777 56666666677777777777777777766666777777777777
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC----CEEEccC
Q 036300 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV----TFLDLRS 221 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L----~~L~L~~ 221 (269)
+++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|++++..+..++.+++| +.|++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 77777774433457777777777777777765 356777777777777777777776666666666666 6777777
Q ss_pred CccCCcchhhhhcCCCCCeEEccCC
Q 036300 222 NNFLGGLVGSIEEMVSLKEMVVSNN 246 (269)
Q Consensus 222 N~l~~~~~~~~~~l~~L~~L~l~~N 246 (269)
|.+++..+..+... +|++|++++|
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCceecCHHHhccC-cceeEecccc
Confidence 77776666555544 5677766666
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=3.3e-22 Score=171.56 Aligned_cols=195 Identities=20% Similarity=0.183 Sum_probs=146.0
Q ss_pred cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC-C--------
Q 036300 65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI-E-------- 135 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~-------- 135 (269)
+.++..+....+.+..++...|..+ ++|++|++++| .+.+..+ +..+++|++|++++|.+++..+. .
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred CCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence 3455666666667777776666665 88888888888 6766543 77888888888888776632110 0
Q ss_pred -------CCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhh-cCcccCCEEeCcCCcCCCcCchh
Q 036300 136 -------PSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTL-GKLARLLKLDLSYNNLQEKIPKE 207 (269)
Q Consensus 136 -------~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~p~~ 207 (269)
...+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +.
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~- 186 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG- 186 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-
T ss_pred CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-
Confidence 1235678888888888886666678888899999999999887766666 4678899999999988854 33
Q ss_pred hcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 208 IGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 208 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
...+++|++|++++|++++ +|..+..+++|++|++++|.+ ..+|. .+..+++|+.|++
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l--~~l~~-~~~~l~~L~~L~l 244 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL--VLIEK-ALRFSQNLEHFDL 244 (317)
T ss_dssp CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC--CEECT-TCCCCTTCCEEEC
T ss_pred ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcc--cchhh-HhhcCCCCCEEEc
Confidence 3458899999999999985 445588899999999999999 46775 6788899998875
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.88 E-value=5e-22 Score=173.51 Aligned_cols=166 Identities=23% Similarity=0.219 Sum_probs=144.3
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCcccc-CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQI 156 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 156 (269)
+..+|..+ .+.++.|+|++| .+.+..+..+. .+++|++|+|++|.+++..+..|.++++|++|+|++|+++...
T Consensus 30 l~~iP~~~----~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 104 (361)
T 2xot_A 30 LPNVPQSL----PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD 104 (361)
T ss_dssp CSSCCSSC----CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cCccCccC----CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC
Confidence 44566544 467999999999 78887777787 9999999999999999877788999999999999999999666
Q ss_pred ccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhh---cCCCCCCEEEccCCccCCcchhhhh
Q 036300 157 PASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI---GNLHNVTFLDLRSNNFLGGLVGSIE 233 (269)
Q Consensus 157 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~~~~~~ 233 (269)
+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+ ..+++|+.|+|++|+|++..+..+.
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 184 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH
T ss_pred HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh
Confidence 6788999999999999999998888899999999999999999997444444 5789999999999999987778888
Q ss_pred cCCC--CCeEEccCCCC
Q 036300 234 EMVS--LKEMVVSNNPI 248 (269)
Q Consensus 234 ~l~~--L~~L~l~~N~l 248 (269)
.++. ++.|++++|++
T Consensus 185 ~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HSCHHHHTTEECCSSCE
T ss_pred hccHhhcceEEecCCCc
Confidence 8887 48999999998
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=3.9e-22 Score=183.48 Aligned_cols=182 Identities=24% Similarity=0.257 Sum_probs=157.1
Q ss_pred cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300 79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA 158 (269)
Q Consensus 79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 158 (269)
.+||..+ .+++++|++++| .+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..|.
T Consensus 20 ~~ip~~l----~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 20 YKIPDNL----PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp SSCCSSS----CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred cccCCCc----cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence 4456543 478999999999 78888788999999999999999999987788899999999999999999977778
Q ss_pred ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC-cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300 159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS 237 (269)
Q Consensus 159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 237 (269)
.|..+++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 99999999999999999986655578999999999999999987 47899999999999999999999888888888888
Q ss_pred C----CeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 238 L----KEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 238 L----~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
| +.+++++|.+ ..++...+..+ +|+.|+
T Consensus 175 L~~~~~~L~l~~n~l--~~~~~~~~~~~-~L~~L~ 206 (570)
T 2z63_A 175 MPLLNLSLDLSLNPM--NFIQPGAFKEI-RLHKLT 206 (570)
T ss_dssp CTTCCCEEECTTCCC--CEECTTTTTTC-EEEEEE
T ss_pred cchhhhhcccCCCCc--eecCHHHhccC-cceeEe
Confidence 8 8999999999 44444455443 566553
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=177.37 Aligned_cols=196 Identities=19% Similarity=0.220 Sum_probs=154.8
Q ss_pred cccccccCCCCCCCcccCchhHHhhc--CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCC
Q 036300 65 CSQCKIFKPPLQSPIEIPSSNWQKLA--NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNL 142 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~lp~~~~~~l~--~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 142 (269)
+..+..+....+.. .+|...+..+. .+|+.|++++| .+.... .+..+++|++|++++|.+++..|..+..+++|
T Consensus 275 l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 350 (520)
T 2z7x_B 275 LKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGT-RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350 (520)
T ss_dssp CCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESS-CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred CceeEeccccccce-ecchhhhhcccccCceeEEEcCCC-cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC
Confidence 33333333333444 67743332221 45899999998 554421 12688999999999999998889999999999
Q ss_pred CEEEccCCcCCC--CCccccCCCCCCCEEEccCCcCCchhhh-hhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEc
Q 036300 143 RRLALAGNQING--QIPASIGGLTKLLIFDLSRNNLSGSMLL-TLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219 (269)
Q Consensus 143 ~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 219 (269)
++|++++|++++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|++
T Consensus 351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L 428 (520)
T 2z7x_B 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL 428 (520)
T ss_dssp CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence 999999999985 4567789999999999999999975665 478889999999999999887776554 78999999
Q ss_pred cCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 220 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++|+++ .+|..+..+++|++|++++|++ ..+|...+..+++|++|++
T Consensus 429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 429 HSNKIK-SIPKQVVKLEALQELNVASNQL--KSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CSSCCC-CCCGGGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC
T ss_pred CCCccc-ccchhhhcCCCCCEEECCCCcC--CccCHHHhccCCcccEEEC
Confidence 999998 7777777999999999999999 4688756888999998875
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=2.4e-22 Score=184.29 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=142.8
Q ss_pred CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300 76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ 155 (269)
Q Consensus 76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 155 (269)
+.+.+||..+ .++|++|++++| .+.+..|..|..+++|++|++++|++++..|..|.++++|++|++++|.+++.
T Consensus 15 ~~l~~ip~~~----~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 15 RSFTSIPSGL----TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp SCCSSCCSCC----CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CccccccccC----CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 4455677654 367888888888 67777777788888888888888888877777888888888888888888866
Q ss_pred CccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCc-hhhcCCCCCCEEEccCCccCCcchhhhh
Q 036300 156 IPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIP-KEIGNLHNVTFLDLRSNNFLGGLVGSIE 233 (269)
Q Consensus 156 ~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 233 (269)
.|..|..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+.
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 66668888888888888888875 345667788888888888887444444 5677888888888888888877888888
Q ss_pred cCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 234 EMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 234 ~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.+++|++|++++|.+ ..+|...+..+++|++|++
T Consensus 170 ~l~~L~~L~l~~n~~--~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 170 SIRDIHHLTLHLSES--AFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCSEEEEEEEECSBS--TTHHHHHHHSTTTBSEEEE
T ss_pred ccccCceEecccCcc--cccchhhHhhcccccEEEc
Confidence 888888888888887 5566545556777777753
No 69
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=1.7e-21 Score=158.74 Aligned_cols=144 Identities=22% Similarity=0.266 Sum_probs=127.5
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP 157 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 157 (269)
+.+||..+ .++|+.|++++| .+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+
T Consensus 23 l~~iP~~l----~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 97 (220)
T 2v9t_B 23 LTEIPTNL----PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97 (220)
T ss_dssp CSSCCSSC----CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred cCcCCCcc----CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH
Confidence 34455544 478999999999 7888777789999999999999999998889999999999999999999995545
Q ss_pred cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300 158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.+..
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 567899999999999999998888899999999999999999998777779999999999999999865
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=171.85 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=101.6
Q ss_pred CCccEEEccCCCCceeccC----ccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC--Cc--cccCC
Q 036300 91 NSLDSLEFGSNPRLIGTIP----TSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ--IP--ASIGG 162 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p--~~l~~ 162 (269)
++|++|++++| .+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++ ..+..
T Consensus 117 ~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 117 LALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp BCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 55666666666 4544333 2233456666666666666655555666666666666666665431 11 12245
Q ss_pred CCCCCEEEccCCcCCchhhh----hhcCcccCCEEeCcCCcCCCcCchhhcCC---CCCCEEEccCCccCCcchhhhhcC
Q 036300 163 LTKLLIFDLSRNNLSGSMLL----TLGKLARLLKLDLSYNNLQEKIPKEIGNL---HNVTFLDLRSNNFLGGLVGSIEEM 235 (269)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~ls~n~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l 235 (269)
+++|++|++++|+++. ++. .+..+++|++|++++|++.+..|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 196 l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-- 271 (310)
T 4glp_A 196 FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-- 271 (310)
T ss_dssp SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--
T ss_pred CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--
Confidence 6666666666666652 222 23566777777777777776656555555 57777777777777 4555443
Q ss_pred CCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 236 VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 236 ~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++|++|++++|++ ..+|. +..+++|+.|++
T Consensus 272 ~~L~~L~Ls~N~l--~~~~~--~~~l~~L~~L~L 301 (310)
T 4glp_A 272 AKLRVLDLSSNRL--NRAPQ--PDELPEVDNLTL 301 (310)
T ss_dssp SCCSCEECCSCCC--CSCCC--TTSCCCCSCEEC
T ss_pred CCCCEEECCCCcC--CCCch--hhhCCCccEEEC
Confidence 6777777777777 33442 456677777664
No 71
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=2.5e-21 Score=157.74 Aligned_cols=151 Identities=23% Similarity=0.298 Sum_probs=136.8
Q ss_pred cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 036300 94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR 173 (269)
Q Consensus 94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (269)
+.++.+++ .+. .+|..+. ++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~-~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGK-GLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTS-CCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCC-CcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888 454 4676554 7899999999999977777899999999999999999977789999999999999999
Q ss_pred CcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 174 NNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 174 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
|.++...+..|..+++|++|++++|++++..|..|..+++|++|+|++|.+++..+..+..+++|++|++++|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999966666788999999999999999988888999999999999999999988888899999999999999998
No 72
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=2.5e-21 Score=157.66 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=122.2
Q ss_pred CCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccC-ccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC
Q 036300 72 KPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP-TSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150 (269)
Q Consensus 72 ~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (269)
....+.+++||..+ .+.+++|++++| .+.+..+ ..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 17 ~~s~n~l~~iP~~~----~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 17 DCSNQKLNKIPEHI----PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp ECCSSCCSSCCSCC----CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeCCCCcccCccCC----CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 33445566777755 456788999888 6777644 35788888999999999888777778888888999999999
Q ss_pred cCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcc
Q 036300 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228 (269)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 228 (269)
.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+....
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 888666677888888888888888888777888888888888888888888877888888888888888888887643
No 73
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=2.4e-21 Score=157.76 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=130.9
Q ss_pred cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCC-CCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300 94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP-IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS 172 (269)
Q Consensus 94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (269)
+.+++++| .+. .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n-~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQ-KLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSS-CCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCC-Ccc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 47899888 554 4676554 457899999999987644 457889999999999999986666688999999999999
Q ss_pred CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCC
Q 036300 173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGG 252 (269)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 252 (269)
+|.+++..+..|..+++|++|++++|++++..|..+..+++|++|+|++|.+++..|..|..+++|++|++++|++ ...
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF-NCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE-ECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC-cCC
Confidence 9999887778888999999999999999988788888999999999999999988888999999999999999998 444
Q ss_pred C
Q 036300 253 L 253 (269)
Q Consensus 253 ~ 253 (269)
.
T Consensus 169 c 169 (220)
T 2v70_A 169 C 169 (220)
T ss_dssp G
T ss_pred C
Confidence 3
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=4.4e-21 Score=176.71 Aligned_cols=130 Identities=20% Similarity=0.292 Sum_probs=76.4
Q ss_pred CCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCc--hhhhhhcCcccCCEEeCcCCcCCCcCch-hhcCCCC
Q 036300 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG--SMLLTLGKLARLLKLDLSYNNLQEKIPK-EIGNLHN 213 (269)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~ 213 (269)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 455666777777777766666666777777777777777765 3345566667777777777776653443 2334444
Q ss_pred ----------------------CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 214 ----------------------VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 214 ----------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
|++|++++|+++ .+|..+..+++|++|++++|++ ..+|...+..+++|+.|++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL--KSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC--CCCCTTSTTTCTTCCCEEC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC--CCCCHHHHhcCCCCCEEEe
Confidence 444444444444 3344444556666666666666 3455433556666665543
No 75
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.2e-20 Score=163.44 Aligned_cols=164 Identities=20% Similarity=0.312 Sum_probs=127.1
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
++|++|++++| .+.+. +. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 177 ~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~ 249 (347)
T 4fmz_A 177 TDLYSLSLNYN-QIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLE 249 (347)
T ss_dssp TTCSEEECTTS-CCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred CCCCEEEccCC-ccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEE
Confidence 56666666666 44432 22 5566666666666666663322 6778888999999998884 444 78889999999
Q ss_pred ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 250 (269)
+++|.+++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++ .
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~ 324 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-T 324 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-C
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-c
Confidence 999988853 4578889999999999999863 4588899999999999999988889999999999999999999 4
Q ss_pred CCCCccccccCcCCceecC
Q 036300 251 GGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 251 ~~~p~~~~~~l~~L~~L~l 269 (269)
+ ++. +..+++|++|++
T Consensus 325 ~-~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 325 D-IRP--LASLSKMDSADF 340 (347)
T ss_dssp C-CGG--GGGCTTCSEESS
T ss_pred c-ccC--hhhhhccceeeh
Confidence 4 443 778999999875
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.86 E-value=4.1e-21 Score=153.65 Aligned_cols=150 Identities=24% Similarity=0.389 Sum_probs=131.3
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
+++|++|++++| .+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n-~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANI-NVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESS-CCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCC-Ccc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 388999999999 666 566 6899999999999999776 33478899999999999999997788889999999999
Q ss_pred EccCCcCCchhhhhhcCcccCCEEeCcCCc-CCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNN-LQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 999999998888999999999999999998 65 466 68899999999999999986 34 788999999999999998
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=167.95 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=145.5
Q ss_pred CCccEEEccCCCCceeccCccc--cCCCCCCEEEcccCCCCCCCC----CCCCCCCCCCEEEccCCcCCCCCccccCCCC
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSI--DYLKNLQSLVLLEKGLTGKLP----IEPSKLVNLRRLALAGNQINGQIPASIGGLT 164 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 164 (269)
++|++|++++| .+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+..++
T Consensus 91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 67999999999 7999999888 899999999999999997555 3456799999999999999977788999999
Q ss_pred CCCEEEccCCcCCch--hh--hhhcCcccCCEEeCcCCcCCCcCch----hhcCCCCCCEEEccCCccCCcchhhhhcC-
Q 036300 165 KLLIFDLSRNNLSGS--ML--LTLGKLARLLKLDLSYNNLQEKIPK----EIGNLHNVTFLDLRSNNFLGGLVGSIEEM- 235 (269)
Q Consensus 165 ~L~~L~l~~n~l~~~--~~--~~~~~l~~L~~L~ls~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l- 235 (269)
+|++|++++|++.+. ++ ..+..+++|++|++++|+++. ++. .+..+++|++|+|++|.+++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999998753 22 234688999999999999974 333 25788999999999999998878777776
Q ss_pred --CCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 236 --VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 236 --~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++|++|++++|.+ ..+|.. + .++|+.|++
T Consensus 249 ~~~~L~~L~Ls~N~l--~~lp~~-~--~~~L~~L~L 279 (310)
T 4glp_A 249 WSSALNSLNLSFAGL--EQVPKG-L--PAKLRVLDL 279 (310)
T ss_dssp CCTTCCCEECCSSCC--CSCCSC-C--CSCCSCEEC
T ss_pred CcCcCCEEECCCCCC--Cchhhh-h--cCCCCEEEC
Confidence 6999999999999 478863 3 278888875
No 78
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1.4e-20 Score=154.24 Aligned_cols=155 Identities=26% Similarity=0.347 Sum_probs=137.0
Q ss_pred ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300 93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS 172 (269)
Q Consensus 93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (269)
-+.++.+++ .+ ..+|..+. ++|++|++++|.+++..|..+..+++|++|++++|+++...+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~-~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSK-RH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTS-CC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCC-Cc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 457888888 44 55776554 899999999999998889999999999999999999985555677999999999999
Q ss_pred CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCC
Q 036300 173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGG 252 (269)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 252 (269)
+|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|++ ...
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW-DCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB-CTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc-cCC
Confidence 99999777777899999999999999999 6888899999999999999999987778899999999999999999 544
Q ss_pred C
Q 036300 253 L 253 (269)
Q Consensus 253 ~ 253 (269)
.
T Consensus 175 c 175 (229)
T 3e6j_A 175 C 175 (229)
T ss_dssp B
T ss_pred c
Confidence 3
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=1.3e-20 Score=159.77 Aligned_cols=161 Identities=27% Similarity=0.371 Sum_probs=71.2
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
++|++|++++| .+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus 46 ~~L~~L~l~~~-~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred CcccEEEccCC-Cccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 44445555444 3322 22 24444445555555554443222 4444445555555554442 22 244444455555
Q ss_pred ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 250 (269)
+++|.+++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i-- 190 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-- 190 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC--
Confidence 555444432 2344444455555555444432 234444445555555554443322 44444455555555544
Q ss_pred CCCCccccccCcCCceec
Q 036300 251 GGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 251 ~~~p~~~~~~l~~L~~L~ 268 (269)
..++ .+..+++|+.|+
T Consensus 191 ~~l~--~l~~l~~L~~L~ 206 (291)
T 1h6t_A 191 SDLR--ALAGLKNLDVLE 206 (291)
T ss_dssp CBCG--GGTTCTTCSEEE
T ss_pred CCCh--hhccCCCCCEEE
Confidence 2233 244444444443
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=2.1e-21 Score=168.81 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=152.8
Q ss_pred CCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCc
Q 036300 31 FGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPT 110 (269)
Q Consensus 31 C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~ 110 (269)
|.+. .|.|...+ +.++|.+. ..+++.+....+.+.+||...|.++ ++|++|+|++| .+.+.+|.
T Consensus 9 C~~~---~v~C~~~~---------Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~N-~i~~~i~~ 72 (350)
T 4ay9_X 9 CSNR---VFLCQESK---------VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQN-DVLEVIEA 72 (350)
T ss_dssp EETT---EEEEESTT---------CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTC-TTCCEEEEECC-TTCCEECT
T ss_pred eeCC---EEEecCCC---------CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCC-CCCCEEECcCC-CCCCccCh
Confidence 5555 78887532 33444432 2345666666688889999888876 89999999999 67676664
Q ss_pred -cccCCCCCCE-EEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC-CcCCchhhhhhcCc
Q 036300 111 -SIDYLKNLQS-LVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR-NNLSGSMLLTLGKL 187 (269)
Q Consensus 111 -~l~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l 187 (269)
.|..++++++ +.+.+|+++...|..|..+++|++|++++|+++...+..+....++..+++.+ +.+....+..|..+
T Consensus 73 ~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence 6788888775 56677889877788899999999999999999855555556666777777765 45554444455555
Q ss_pred c-cCCEEeCcCCcCCCcCchhhcCCCCCCEEEccC-CccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCc
Q 036300 188 A-RLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS-NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265 (269)
Q Consensus 188 ~-~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~ 265 (269)
. .++.|++++|+++. +|.......+|+++++++ |.++...+..|..+++|++|++++|++ ..+|...+.++++|+
T Consensus 153 ~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l--~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 153 SFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLENLKKLR 229 (350)
T ss_dssp BSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC--CCCCSSSCTTCCEEE
T ss_pred chhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc--CccChhhhccchHhh
Confidence 3 57888888888874 454445566788888875 555544445678888888888888888 566665555555554
Q ss_pred ee
Q 036300 266 IW 267 (269)
Q Consensus 266 ~L 267 (269)
.+
T Consensus 230 ~l 231 (350)
T 4ay9_X 230 AR 231 (350)
T ss_dssp CT
T ss_pred hc
Confidence 43
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1e-21 Score=168.47 Aligned_cols=183 Identities=19% Similarity=0.153 Sum_probs=141.2
Q ss_pred CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC
Q 036300 77 SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQI 156 (269)
Q Consensus 77 ~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 156 (269)
...+++..++... ++|++|++++| .+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +
T Consensus 21 ~l~~~~~~~~~~~-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l 95 (317)
T 3o53_A 21 SLKQALASLRQSA-WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-L 95 (317)
T ss_dssp THHHHHHHHHTTG-GGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-E
T ss_pred chhhhHHHHhccC-CCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-c
Confidence 3444555555543 78999999999 7888777899999999999999999986554 8888999999998888763 2
Q ss_pred cc-----------------ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhh-cCCCCCCEEE
Q 036300 157 PA-----------------SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLD 218 (269)
Q Consensus 157 p~-----------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~ 218 (269)
+. ....+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 96 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 96 LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp EECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred cCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 21 01235677888888888887667778888889999999998887666655 3678899999
Q ss_pred ccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 219 LRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 219 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+++|.+++. + ....+++|++|++++|.+ ..+|. .+..+++|+.|++
T Consensus 176 L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l--~~l~~-~~~~l~~L~~L~L 221 (317)
T 3o53_A 176 LQYNFIYDV-K-GQVVFAKLKTLDLSSNKL--AFMGP-EFQSAAGVTWISL 221 (317)
T ss_dssp CTTSCCCEE-E-CCCCCTTCCEEECCSSCC--CEECG-GGGGGTTCSEEEC
T ss_pred CCCCcCccc-c-cccccccCCEEECCCCcC--Ccchh-hhcccCcccEEEC
Confidence 999988854 3 233478899999999999 55665 4788899998875
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.7e-21 Score=175.39 Aligned_cols=171 Identities=19% Similarity=0.161 Sum_probs=137.9
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc------------
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA------------ 158 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~------------ 158 (269)
++|++|+|++| .+.+..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+.
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 48999999999 7888878899999999999999999997655 88888998888888877632110
Q ss_pred ----ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhc-CCCCCCEEEccCCccCCcchhhhh
Q 036300 159 ----SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG-NLHNVTFLDLRSNNFLGGLVGSIE 233 (269)
Q Consensus 159 ----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~ 233 (269)
....+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..+ ..
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~ 188 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QV 188 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cc
Confidence 012356788888888888877787888889999999999999887777775 78899999999999886532 33
Q ss_pred cCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 234 EMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 234 ~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.+++|++|++++|.+ ..+|. .+..+++|+.|++
T Consensus 189 ~l~~L~~L~Ls~N~l--~~~~~-~~~~l~~L~~L~L 221 (487)
T 3oja_A 189 VFAKLKTLDLSSNKL--AFMGP-EFQSAAGVTWISL 221 (487)
T ss_dssp CCTTCCEEECCSSCC--CEECG-GGGGGTTCSEEEC
T ss_pred cCCCCCEEECCCCCC--CCCCH-hHcCCCCccEEEe
Confidence 588999999999999 45665 4888899998875
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.8e-20 Score=158.17 Aligned_cols=162 Identities=22% Similarity=0.354 Sum_probs=140.7
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
++|++|++++| .+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++ .++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~-~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCC-CccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEE
Confidence 89999999999 6655 55 68899999999999999995 444 999999999999999998 455 689999999999
Q ss_pred ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 250 (269)
+++|.+++. +. +..+++|+.|++++|++++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 114 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l-- 185 (308)
T 1h6u_A 114 LTSTQITDV-TP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI-- 185 (308)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--
T ss_pred CCCCCCCCc-hh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc--
Confidence 999999864 43 88999999999999999864 43 8899999999999999986444 89999999999999999
Q ss_pred CCCCccccccCcCCceecC
Q 036300 251 GGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 251 ~~~p~~~~~~l~~L~~L~l 269 (269)
..++. +..+++|++|++
T Consensus 186 ~~~~~--l~~l~~L~~L~L 202 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHL 202 (308)
T ss_dssp CCCGG--GGGCTTCCEEEC
T ss_pred CcChh--hcCCCCCCEEEc
Confidence 45553 788999999875
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.8e-20 Score=148.04 Aligned_cols=156 Identities=24% Similarity=0.232 Sum_probs=133.7
Q ss_pred cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 036300 94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR 173 (269)
Q Consensus 94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (269)
+.++.+++ .+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~-~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQ-GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSS-CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 56777777 444 356544 46899999999999976666789999999999999999965556678999999999999
Q ss_pred CcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCC
Q 036300 174 NNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGL 253 (269)
Q Consensus 174 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 253 (269)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++ .+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~~~~ 164 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-DCTC 164 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-CCCT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-ecCC
Confidence 999977677789999999999999999987667789999999999999999987777799999999999999998 5544
Q ss_pred C
Q 036300 254 N 254 (269)
Q Consensus 254 p 254 (269)
|
T Consensus 165 ~ 165 (208)
T 2o6s_A 165 P 165 (208)
T ss_dssp T
T ss_pred C
Confidence 3
No 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.2e-20 Score=164.87 Aligned_cols=169 Identities=21% Similarity=0.156 Sum_probs=143.2
Q ss_pred cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCC-CCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300 94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS-KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS 172 (269)
Q Consensus 94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (269)
+.++++++ .+.. +|..+. +.++.|+|++|.+++..+..+. ++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~-~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57899888 5554 776554 5689999999999977777777 99999999999999997667789999999999999
Q ss_pred CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhh---hcCCCCCeEEccCCCCC
Q 036300 173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSI---EEMVSLKEMVVSNNPIF 249 (269)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~ 249 (269)
+|+++...+..|..+++|+.|++++|++.+..|..|..+++|++|+|++|.+++..+..+ ..+++|++|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l- 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL- 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-
Confidence 999997777789999999999999999998888899999999999999999997655555 6799999999999999
Q ss_pred CCCCCccccccCcCC--ceec
Q 036300 250 GGGLNGIRWENLQNL--EIWI 268 (269)
Q Consensus 250 ~~~~p~~~~~~l~~L--~~L~ 268 (269)
..+|...+..++.+ +.|+
T Consensus 176 -~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 176 -KKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp -CCCCHHHHHHSCHHHHTTEE
T ss_pred -CccCHHHhhhccHhhcceEE
Confidence 56776567666653 4444
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.9e-22 Score=171.36 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=145.3
Q ss_pred cccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceec-cCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEc
Q 036300 69 KIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGT-IPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLAL 147 (269)
Q Consensus 69 ~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 147 (269)
..+....+.++..+..++. +++|++|++++| .+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 73 ~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAEHFS--PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp SEEECTTCEECSCCCSCCC--CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred eEEEcCCccccccchhhcc--CCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 3333333434444444432 478899999888 66655 7777888889999999998888777777888888999999
Q ss_pred cCC-cCCCC-CccccCCCCCCCEEEccCC-cCCch-hhhhhcCcc-cCCEEeCcCC--cCC-CcCchhhcCCCCCCEEEc
Q 036300 148 AGN-QINGQ-IPASIGGLTKLLIFDLSRN-NLSGS-MLLTLGKLA-RLLKLDLSYN--NLQ-EKIPKEIGNLHNVTFLDL 219 (269)
Q Consensus 148 ~~n-~l~~~-~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~ls~n--~l~-~~~p~~~~~l~~L~~L~L 219 (269)
++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 988 57642 5666778888999999988 88754 567777888 8999999888 455 345667778888999999
Q ss_pred cCCc-cCCcchhhhhcCCCCCeEEccCCC-CCCCCCCccccccCcCCceecC
Q 036300 220 RSNN-FLGGLVGSIEEMVSLKEMVVSNNP-IFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 220 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++|. +++..+..+..+++|++|++++|. + ..... ..+.++++|++|++
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~l~~~~~L~~L~l 279 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI-IPETL-LELGEIPTLKTLQV 279 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTC-CGGGG-GGGGGCTTCCEEEC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC-CHHHH-HHHhcCCCCCEEec
Confidence 9888 777777788888899999998884 4 22211 25677888888875
No 87
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=7.8e-20 Score=164.74 Aligned_cols=162 Identities=25% Similarity=0.353 Sum_probs=91.2
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
++|++|++++| .+.+. +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|++|+
T Consensus 221 ~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 221 TNLDELSLNGN-QLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLE 293 (466)
T ss_dssp TTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEE
T ss_pred CCCCEEECCCC-Ccccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEE
Confidence 44455555444 33321 234455555555555555553322 55556666666666666532 22 55566666666
Q ss_pred ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 250 (269)
+++|++++..+ +..+++|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|++|++++|++ .
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l-~ 366 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI-S 366 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC-C
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc-C
Confidence 66666654333 5556666666666666665433 55666666666666666643 3566667777777777776 3
Q ss_pred CCCCccccccCcCCceecC
Q 036300 251 GGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 251 ~~~p~~~~~~l~~L~~L~l 269 (269)
+..| +..+++|+.|++
T Consensus 367 ~~~~---~~~l~~L~~L~l 382 (466)
T 1o6v_A 367 DLTP---LANLTRITQLGL 382 (466)
T ss_dssp BCGG---GTTCTTCCEEEC
T ss_pred ccch---hhcCCCCCEEec
Confidence 3333 556666666653
No 88
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=2e-19 Score=155.69 Aligned_cols=185 Identities=19% Similarity=0.299 Sum_probs=96.1
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCC--------------
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKL-------------- 132 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-------------- 132 (269)
+++.+....+.+..+|. +..+ ++|++|++++| .+.+ ++ .+..+++|++|++++|.+.+..
T Consensus 67 ~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~L~~n-~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP--LSNL-VKLTNLYIGTN-KITD-IS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLG 140 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSS-CCCC-CG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECT
T ss_pred CccEEEccCCccccchh--hhcC-CcCCEEEccCC-cccC-ch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECC
Confidence 33333333344444444 2232 55555555555 3333 22 3455555555555555554211
Q ss_pred -------CCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc
Q 036300 133 -------PIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP 205 (269)
Q Consensus 133 -------p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 205 (269)
+..+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 216 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCcccccchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch
Confidence 1124444444444444444442 221 4455555555555555543222 4455555555555555553222
Q ss_pred hhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 206 KEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 206 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+ ..++ .+..+++|++|++
T Consensus 217 --~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l--~~~~--~~~~l~~L~~L~l 272 (347)
T 4fmz_A 217 --VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDIN--AVKDLTKLKMLNV 272 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--CCCG--GGTTCTTCCEEEC
T ss_pred --hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc--CCCh--hHhcCCCcCEEEc
Confidence 5666777777777777764433 66777777777777777 3343 4667777777764
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.3e-20 Score=173.31 Aligned_cols=195 Identities=23% Similarity=0.301 Sum_probs=114.8
Q ss_pred CCCCCCCCCCCC-----CCCCCCce-EeecCCCceEEEEEEeC-----CCCCCCcccccccccCCCCCCCcccCchhHHh
Q 036300 20 WWNGSDLYPDPF-----GRTGLQGV-SCDFFHGLWHVSAISIG-----PVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQK 88 (269)
Q Consensus 20 ~W~~~~~~~~~C-----~~~~~~gv-~C~~~~~~~~v~~l~l~-----~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~ 88 (269)
+|... .++| .|. |+ .|... +++.+++. .+|... +.++..+....|.+..|| ..
T Consensus 35 ~W~~~---~~~~~~~~~~~~---~l~~C~~~----~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip-~~--- 98 (571)
T 3cvr_A 35 KWEKQ---ALPGENRNEAVS---LLKECLIN----QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP-EL--- 98 (571)
T ss_dssp HHHTT---CCTTCCHHHHHH---HHHHHHHT----TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC-CC---
T ss_pred HHhcc---CCccccccchhh---hccccccC----CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc-cc---
Confidence 47554 3788 465 88 67643 46677763 223222 134445555555556666 22
Q ss_pred hcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCE
Q 036300 89 LANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLI 168 (269)
Q Consensus 89 l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 168 (269)
+++|++|++++| .+.+ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++
T Consensus 99 -l~~L~~L~Ls~N-~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~ 164 (571)
T 3cvr_A 99 -PASLEYLDACDN-RLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV 164 (571)
T ss_dssp -CTTCCEEECCSS-CCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred -cCCCCEEEccCC-CCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence 366667777666 5555 555 443 66677777776664 454 45666777777776663 554 4566677
Q ss_pred EEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC-------CEEEccCCccCCcchhhhhcCCCCCeE
Q 036300 169 FDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV-------TFLDLRSNNFLGGLVGSIEEMVSLKEM 241 (269)
Q Consensus 169 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L 241 (269)
|++++|.+++ +|. +. ++|+.|++++|+++ .+|. +.. +| +.|+|++|.|+ .+|..+..+++|++|
T Consensus 165 L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 165 LSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp EECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred EECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 7777776664 444 43 66777777777666 3454 433 55 66777777666 455556666777777
Q ss_pred EccCCCCCCCCCC
Q 036300 242 VVSNNPIFGGGLN 254 (269)
Q Consensus 242 ~l~~N~l~~~~~p 254 (269)
++++|++ .+.+|
T Consensus 236 ~L~~N~l-~~~~p 247 (571)
T 3cvr_A 236 ILEDNPL-SSRIR 247 (571)
T ss_dssp ECCSSSC-CHHHH
T ss_pred EeeCCcC-CCcCH
Confidence 7777776 44444
No 90
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=1.5e-19 Score=162.80 Aligned_cols=183 Identities=30% Similarity=0.376 Sum_probs=129.0
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
++..+....+....++. +..+ ++|++|++++| .+.+..| ++.+++|++|++++|.+++ + ..+..+++|++|+
T Consensus 178 ~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 178 TLERLDISSNKVSDISV--LAKL-TNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLD 249 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GGGC-TTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred CCCEEECcCCcCCCChh--hccC-CCCCEEEecCC-ccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEE
Confidence 34444444444455543 2333 67777777777 5555433 5667777777777777764 2 3567778888888
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
+++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+.. . +..+++|+.|++++|++++
T Consensus 250 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS-P-ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG-G-GGGCTTCSEEECCSSCCSC
T ss_pred CCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch-h-hcCCCCCCEEECcCCcCCC
Confidence 88888874433 7778888888888888875443 777888888888888887643 3 6788888888888888887
Q ss_pred cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 227 GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
..| +..+++|++|++++|++ ..++ .+.++++|+.|++
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l--~~~~--~l~~l~~L~~L~l 360 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKV--SDVS--SLANLTNINWLSA 360 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCC--CCCG--GGTTCTTCCEEEC
T ss_pred chh--hccCccCCEeECCCCcc--CCch--hhccCCCCCEEeC
Confidence 655 67888888888888888 3343 5778888888865
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=3.8e-20 Score=156.96 Aligned_cols=159 Identities=23% Similarity=0.303 Sum_probs=134.7
Q ss_pred CCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 036300 74 PLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQIN 153 (269)
Q Consensus 74 ~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 153 (269)
..+.+..+|. +.. +++|++|++++| .+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.++
T Consensus 54 ~~~~i~~~~~--~~~-l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 54 NNSDIKSVQG--IQY-LPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp TTSCCCCCTT--GGG-CTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC
T ss_pred cCCCcccChh--Hhc-CCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC
Confidence 3344455554 334 499999999999 6776443 8999999999999999985 44 4899999999999999999
Q ss_pred CCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhh
Q 036300 154 GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIE 233 (269)
Q Consensus 154 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 233 (269)
+ + ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|++|++++|.+++ ++ .+.
T Consensus 126 ~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~ 197 (291)
T 1h6t_A 126 D-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALA 197 (291)
T ss_dssp C-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGT
T ss_pred C-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhc
Confidence 4 4 4688999999999999999865 578899999999999999997543 8999999999999999985 44 489
Q ss_pred cCCCCCeEEccCCCC
Q 036300 234 EMVSLKEMVVSNNPI 248 (269)
Q Consensus 234 ~l~~L~~L~l~~N~l 248 (269)
.+++|+.|++++|++
T Consensus 198 ~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 198 GLKNLDVLELFSQEC 212 (291)
T ss_dssp TCTTCSEEEEEEEEE
T ss_pred cCCCCCEEECcCCcc
Confidence 999999999999998
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=3.2e-20 Score=148.46 Aligned_cols=148 Identities=18% Similarity=0.274 Sum_probs=131.8
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC
Q 036300 112 IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL 191 (269)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 191 (269)
...+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 477889999999999999 667 7899999999999999776 44 4788999999999999999987888899999999
Q ss_pred EEeCcCCcCCCcCchhhcCCCCCCEEEccCCc-cCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 192 KLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN-FLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 192 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+|++++|++++..|..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+ ..++ .+..+++|+.|++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i--~~~~--~l~~l~~L~~L~l 188 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV--HDYR--GIEDFPKLNQLYA 188 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC--CCCT--TGGGCSSCCEEEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC--cChH--HhccCCCCCEEEe
Confidence 99999999998788899999999999999998 65 555 789999999999999999 4455 5788999999874
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.5e-19 Score=167.68 Aligned_cols=166 Identities=22% Similarity=0.271 Sum_probs=127.1
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
.+..+....+.+..+|. +.. +++|+.|+|++| .+.+..+ +..+++|+.|+|++|.+.+ +| .+..+++|++|+
T Consensus 44 ~L~~L~l~~n~i~~l~~--l~~-l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQG--IQY-LPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TCCCCBCTTCCCCCCTT--GGG-CTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCEEECcCCCCCCChH--Hcc-CCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 34444455555666663 334 488888888888 6766443 7888888888888888874 33 688888888888
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
|++|.+++ ++ .+..+++|+.|++++|.+++. ..+..+++|+.|+|++|++.+..| +..+++|+.|+|++|.+++
T Consensus 116 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 88888884 43 577888888888888888854 567788888888888888886544 7888888888888888875
Q ss_pred cchhhhhcCCCCCeEEccCCCC
Q 036300 227 GLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~N~l 248 (269)
. ..+..+++|+.|+|++|++
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEE
T ss_pred C--hHHccCCCCCEEEccCCcC
Confidence 3 3578888888888888888
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.9e-20 Score=173.89 Aligned_cols=190 Identities=19% Similarity=0.184 Sum_probs=153.8
Q ss_pred EeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCC
Q 036300 54 SIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP 133 (269)
Q Consensus 54 ~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 133 (269)
++..+|.+.- ..++.+..+.|.+..||+..|.++ ++|++|+|++| .+.+..+.+|..+++|++|+|++|++++..+
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 4555665321 346677777889999999888887 99999999999 7888777789999999999999999997666
Q ss_pred CCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCC
Q 036300 134 IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLH 212 (269)
Q Consensus 134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 212 (269)
..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 789999999999999999996666679999999999999999975 4578889999999999999999987777766544
Q ss_pred C----CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 213 N----VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 213 ~----L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
+ ...++++.|.++...+..+. ...+..+++.+|..
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFD 236 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCS
T ss_pred hhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccc
Confidence 3 35788999988754444433 34556677777755
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=2.2e-19 Score=166.49 Aligned_cols=163 Identities=27% Similarity=0.373 Sum_probs=140.0
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
+++|+.|++++| .+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.++ .+| .+..+++|++|
T Consensus 42 L~~L~~L~l~~n-~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTC-CCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEE
T ss_pred CCCCCEEECcCC-CCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEE
Confidence 389999999999 5654 44 58899999999999999996444 889999999999999998 445 68899999999
Q ss_pred EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF 249 (269)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 249 (269)
++++|.+++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i- 187 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI- 187 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC-
Confidence 9999999853 4588899999999999999864 568899999999999999997666 88999999999999999
Q ss_pred CCCCCccccccCcCCceecC
Q 036300 250 GGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 250 ~~~~p~~~~~~l~~L~~L~l 269 (269)
..++ .+..+++|+.|+|
T Consensus 188 -~~l~--~l~~l~~L~~L~L 204 (605)
T 1m9s_A 188 -SDLR--ALAGLKNLDVLEL 204 (605)
T ss_dssp -CBCG--GGTTCTTCSEEEC
T ss_pred -CCCh--HHccCCCCCEEEc
Confidence 4455 5888999999875
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1e-21 Score=172.88 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=119.1
Q ss_pred CCccEEEccCCCCcee----ccCccccCCCCCCEEEcccCCCCCCCCCCC----CCC---------CCCCEEEccCCcCC
Q 036300 91 NSLDSLEFGSNPRLIG----TIPTSIDYLKNLQSLVLLEKGLTGKLPIEP----SKL---------VNLRRLALAGNQIN 153 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l---------~~L~~L~L~~n~l~ 153 (269)
++|++|+|++| .+.+ .+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|++++|+++
T Consensus 94 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 94 PKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 77888888888 6666 366677777888888888887764322222 233 77888888888776
Q ss_pred -CCCc---cccCCCCCCCEEEccCCcCCc-----hhhhhhcCcccCCEEeCcCCcCC----CcCchhhcCCCCCCEEEcc
Q 036300 154 -GQIP---ASIGGLTKLLIFDLSRNNLSG-----SMLLTLGKLARLLKLDLSYNNLQ----EKIPKEIGNLHNVTFLDLR 220 (269)
Q Consensus 154 -~~~p---~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~ls~n~l~----~~~p~~~~~l~~L~~L~L~ 220 (269)
+.++ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ..+|..+..+++|++|+|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 3344 355667778888888887763 23336667777888888887775 4466667777778888888
Q ss_pred CCccCCc----chhhhhc--CCCCCeEEccCCCCCCC----CCCccccccCcCCceecC
Q 036300 221 SNNFLGG----LVGSIEE--MVSLKEMVVSNNPIFGG----GLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 221 ~N~l~~~----~~~~~~~--l~~L~~L~l~~N~l~~~----~~p~~~~~~l~~L~~L~l 269 (269)
+|.+++. ++..+.. +++|++|++++|.+ .+ .+|.....++++|++|++
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i-~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC-BHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC-CHHHHHHHHHHHHhcCCCceEEEc
Confidence 8877754 4555533 77788888888877 33 255433356777777764
No 97
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=5.1e-19 Score=159.12 Aligned_cols=162 Identities=22% Similarity=0.225 Sum_probs=83.5
Q ss_pred cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCE
Q 036300 65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRR 144 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 144 (269)
+.+++.+....+.+..+| +.. +++|++|++++| .+.+. + ++.+++|++|++++|.+++ +| ++.+++|++
T Consensus 63 l~~L~~L~Ls~n~l~~~~---~~~-l~~L~~L~Ls~N-~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD---LSQ-NTNLTYLACDSN-KLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp CTTCSEEECCSSCCSCCC---CTT-CTTCSEEECCSS-CCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred cCCCCEEEccCCcCCeEc---ccc-CCCCCEEECcCC-CCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence 334444444444444444 222 255555555555 44442 2 5555555555555555553 22 455555555
Q ss_pred EEccCCcCCC---------------------CCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCc
Q 036300 145 LALAGNQING---------------------QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEK 203 (269)
Q Consensus 145 L~L~~n~l~~---------------------~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 203 (269)
|++++|.+++ .+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|++++.
T Consensus 132 L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp EECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred EECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 5555555553 22 23444455555555555543 22 44555555555555555542
Q ss_pred CchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300 204 IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 204 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 248 (269)
.++.+++|++|++++|++++ +| +..+++|++|++++|++
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred ---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 25555666666666666664 33 55566666666666666
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=8.4e-21 Score=163.58 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=152.2
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCC-CCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGK-LPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (269)
+.++.|++++| .+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 78999999999 67776554 66899999999999998865 77778999999999999999998888889999999999
Q ss_pred EccCC-cCCch-hhhhhcCcccCCEEeCcCC-cCCCc-CchhhcCCC-CCCEEEccCC--ccC-CcchhhhhcCCCCCeE
Q 036300 170 DLSRN-NLSGS-MLLTLGKLARLLKLDLSYN-NLQEK-IPKEIGNLH-NVTFLDLRSN--NFL-GGLVGSIEEMVSLKEM 241 (269)
Q Consensus 170 ~l~~n-~l~~~-~~~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~l~~L~~L 241 (269)
++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 99999 68763 6777889999999999999 88864 577788999 9999999999 566 4677888999999999
Q ss_pred EccCCC-CCCCCCCccccccCcCCceecC
Q 036300 242 VVSNNP-IFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 242 ~l~~N~-l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++++|. + ++..+. .+.++++|++|++
T Consensus 228 ~l~~~~~l-~~~~~~-~l~~l~~L~~L~l 254 (336)
T 2ast_B 228 DLSDSVML-KNDCFQ-EFFQLNYLQHLSL 254 (336)
T ss_dssp ECTTCTTC-CGGGGG-GGGGCTTCCEEEC
T ss_pred eCCCCCcC-CHHHHH-HHhCCCCCCEeeC
Confidence 999999 6 555554 7889999999975
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.81 E-value=3e-21 Score=182.76 Aligned_cols=201 Identities=23% Similarity=0.203 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCC----CCCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCC
Q 036300 3 RKEKEALYSTIQGFVGKWWNGSDLY----PDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSP 78 (269)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~W~~~~~~----~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~ 78 (269)
+.++++|++++.+..+..|+....+ ...+.|. ++.+... +++.+++.. +..
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~----~~~~l~L~~------------------n~~ 185 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTAT---NSAVSTP----LTPKIELFA------------------NGK 185 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccccCC---CceecCC----ccceEEeeC------------------CCC
Confidence 5688999999999877555543221 1344565 7777653 566666610 001
Q ss_pred cccCchhHHhh---cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300 79 IEIPSSNWQKL---ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ 155 (269)
Q Consensus 79 ~~lp~~~~~~l---~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 155 (269)
..+|...+..+ -..+..+++..| .+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .
T Consensus 186 ~~~~~~~l~~l~Ls~~~i~~~~~~~n-~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~ 261 (727)
T 4b8c_D 186 DEANQALLQHKKLSQYSIDEDDDIEN-RMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-E 261 (727)
T ss_dssp --------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-C
T ss_pred CcchhhHhhcCccCcccccCcccccc-cee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-c
Confidence 11111111000 011222223333 222 33556666777777777777766 56666666777777777777776 6
Q ss_pred CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhc
Q 036300 156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEE 234 (269)
Q Consensus 156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 234 (269)
+|..|..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..
T Consensus 262 lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 6666777777777777777776 55666777777777777777765 45666777777777777777777666665543
No 100
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=1.4e-18 Score=156.35 Aligned_cols=170 Identities=19% Similarity=0.205 Sum_probs=116.2
Q ss_pred CCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 036300 73 PPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQI 152 (269)
Q Consensus 73 ~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 152 (269)
...+.+..+| . +..+ ++|++|++++| .+.+. | ++.+++|++|++++|.+++. + ++.+++|++|++++|.+
T Consensus 49 Ls~n~l~~~~-~-l~~l-~~L~~L~Ls~n-~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 49 CHNSSITDMT-G-IEKL-TGLTKLICTSN-NITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp CCSSCCCCCT-T-GGGC-TTCSEEECCSS-CCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCC
T ss_pred ccCCCcccCh-h-hccc-CCCCEEEccCC-cCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcC
Confidence 3334445566 2 3444 99999999999 67774 4 88999999999999999963 4 88999999999999999
Q ss_pred CCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCC----------------------cCCCcCchhhcC
Q 036300 153 NGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN----------------------NLQEKIPKEIGN 210 (269)
Q Consensus 153 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n----------------------~l~~~~p~~~~~ 210 (269)
++ +| +..+++|++|++++|.+++. + ++.+++|++|++++| ++++ +| +..
T Consensus 119 ~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 119 TK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp SC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred Ce-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--ccc
Confidence 95 55 88899999999999998863 2 445555555555555 4443 22 444
Q ss_pred CCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 211 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+++|+.|++++|.+++. .++.+++|++|++++|++ .+ +| +..+++|++|++
T Consensus 190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l-~~-ip---~~~l~~L~~L~l 240 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL-TE-ID---VTPLTQLTYFDC 240 (457)
T ss_dssp CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC-SC-CC---CTTCTTCSEEEC
T ss_pred CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc-cc-cC---ccccCCCCEEEe
Confidence 45555555555555533 255566666666666666 22 44 456666666653
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.80 E-value=4.1e-19 Score=138.20 Aligned_cols=135 Identities=22% Similarity=0.193 Sum_probs=81.0
Q ss_pred CCCCEEEcccCCCC-CCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEe
Q 036300 116 KNLQSLVLLEKGLT-GKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD 194 (269)
Q Consensus 116 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 194 (269)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555555 44555555555666666666655532 4455566666666666666554555555566666666
Q ss_pred CcCCcCCCcC-chhhcCCCCCCEEEccCCccCCcch---hhhhcCCCCCeEEccCCCCCCCCCC
Q 036300 195 LSYNNLQEKI-PKEIGNLHNVTFLDLRSNNFLGGLV---GSIEEMVSLKEMVVSNNPIFGGGLN 254 (269)
Q Consensus 195 ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~p 254 (269)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+ .++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED--QEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS--CBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh--hhcc
Confidence 6666666421 1456666777777777777665443 3666777777777777776 4444
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=2.2e-20 Score=163.11 Aligned_cols=199 Identities=20% Similarity=0.183 Sum_probs=131.5
Q ss_pred ccccCCCCCCCcccCc----hhHHhhcC-CccEEEccCCCCceeccCccccCC-----CCCCEEEcccCCCCCCCCCCC-
Q 036300 68 CKIFKPPLQSPIEIPS----SNWQKLAN-SLDSLEFGSNPRLIGTIPTSIDYL-----KNLQSLVLLEKGLTGKLPIEP- 136 (269)
Q Consensus 68 l~~~~~~~~~~~~lp~----~~~~~l~~-~L~~L~l~~n~~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~~- 136 (269)
+..+..+.+.++.++. ..+..+ + +|++|++++| .+.+..+..+..+ ++|++|++++|.+++..+..+
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANT-PASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTC-CTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhC-CCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 3444444455666665 444444 5 7888888888 6777666666654 888888888888876555433
Q ss_pred ---CCC-CCCCEEEccCCcCCCCCcccc----CC-CCCCCEEEccCCcCCc----hhhhhhcCcc-cCCEEeCcCCcCCC
Q 036300 137 ---SKL-VNLRRLALAGNQINGQIPASI----GG-LTKLLIFDLSRNNLSG----SMLLTLGKLA-RLLKLDLSYNNLQE 202 (269)
Q Consensus 137 ---~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~l~~n~l~~----~~~~~~~~l~-~L~~L~ls~n~l~~ 202 (269)
..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++ .++..+..++ +|++|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 333 788888888888875554433 33 3578888888888874 3344455555 88888888888876
Q ss_pred cCchhh----cCC-CCCCEEEccCCccCCc----chhhhhc-CCCCCeEEccCCCCCCCCCC---ccccccCcCCceecC
Q 036300 203 KIPKEI----GNL-HNVTFLDLRSNNFLGG----LVGSIEE-MVSLKEMVVSNNPIFGGGLN---GIRWENLQNLEIWIF 269 (269)
Q Consensus 203 ~~p~~~----~~l-~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~l~~~~~p---~~~~~~l~~L~~L~l 269 (269)
..+..+ ... ++|++|+|++|.+++. ++..+.. .++|++|++++|.+ .+..+ ...+..+++|+.|++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHHHHHHHHHhcCCCccEEEe
Confidence 655433 344 5888888888888752 4555555 35888888888888 33222 123456677777653
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=6.6e-19 Score=147.20 Aligned_cols=156 Identities=19% Similarity=0.295 Sum_probs=130.7
Q ss_pred CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300 76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ 155 (269)
Q Consensus 76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 155 (269)
+.+..++. +..+ ++|++|++++| .+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|+++ .
T Consensus 29 ~~i~~~~~--~~~l-~~L~~L~l~~n-~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~ 99 (263)
T 1xeu_A 29 QSVTDLVS--QKEL-SGVQNFNGDNS-NIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-N 99 (263)
T ss_dssp SCTTSEEC--HHHH-TTCSEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-C
T ss_pred CCcccccc--hhhc-CcCcEEECcCC-Cccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-C
Confidence 34455552 3454 99999999999 6654 55 688999999999999999954 44 899999999999999998 4
Q ss_pred CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcC
Q 036300 156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEM 235 (269)
Q Consensus 156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 235 (269)
+|.. .. ++|++|++++|.+++. + .+..+++|+.|++++|++++ ++ .+..+++|++|++++|.+++. ..+..+
T Consensus 100 l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l 171 (263)
T 1xeu_A 100 LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRL 171 (263)
T ss_dssp CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTC
T ss_pred cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccC
Confidence 5543 33 8999999999999853 3 58899999999999999986 44 688999999999999999866 678899
Q ss_pred CCCCeEEccCCCC
Q 036300 236 VSLKEMVVSNNPI 248 (269)
Q Consensus 236 ~~L~~L~l~~N~l 248 (269)
++|++|++++|++
T Consensus 172 ~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 172 KKVNWIDLTGQKC 184 (263)
T ss_dssp CCCCEEEEEEEEE
T ss_pred CCCCEEeCCCCcc
Confidence 9999999999998
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2e-19 Score=150.30 Aligned_cols=161 Identities=22% Similarity=0.250 Sum_probs=136.4
Q ss_pred CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
..++.++++++ .+.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 19 ~~l~~l~l~~~-~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQ-SVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCS-CTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEE
T ss_pred HHHHHHHhcCC-Ccccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEE
Confidence 56788899998 66654 3 5788999999999999998 566 78999999999999999994 454 89999999999
Q ss_pred ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 250 (269)
+++|++++ ++.. .. ++|+.|++++|++++ ++ .+..+++|+.|++++|++++. + .+..+++|++|++++|.+ .
T Consensus 92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i-~ 163 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI-T 163 (263)
T ss_dssp CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC-C
T ss_pred CCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC-c
Confidence 99999985 4432 23 899999999999986 44 589999999999999999864 4 789999999999999999 3
Q ss_pred CCCCccccccCcCCceecC
Q 036300 251 GGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 251 ~~~p~~~~~~l~~L~~L~l 269 (269)
.++ .+..+++|+.|++
T Consensus 164 -~~~--~l~~l~~L~~L~l 179 (263)
T 1xeu_A 164 -NTG--GLTRLKKVNWIDL 179 (263)
T ss_dssp -BCT--TSTTCCCCCEEEE
T ss_pred -chH--HhccCCCCCEEeC
Confidence 343 6888999998874
No 105
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=9.3e-19 Score=139.43 Aligned_cols=132 Identities=23% Similarity=0.279 Sum_probs=116.0
Q ss_pred cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300 94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI-EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS 172 (269)
Q Consensus 94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (269)
+++++++| .+ +.+|..+. ++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~-~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-Cc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78999999 55 56777665 3899999999999866554 48899999999999999998778899999999999999
Q ss_pred CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300 173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 229 (269)
+|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999998888888999999999999999998888889999999999999999987544
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.79 E-value=5e-19 Score=137.75 Aligned_cols=134 Identities=26% Similarity=0.258 Sum_probs=119.5
Q ss_pred cCCccEEEccCCCCce-eccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCE
Q 036300 90 ANSLDSLEFGSNPRLI-GTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLI 168 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 168 (269)
+++|++|++++| .+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 478999999999 777 67898889999999999999999965 78999999999999999999778888888999999
Q ss_pred EEccCCcCCchh-hhhhcCcccCCEEeCcCCcCCCcCc---hhhcCCCCCCEEEccCCccCC
Q 036300 169 FDLSRNNLSGSM-LLTLGKLARLLKLDLSYNNLQEKIP---KEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 169 L~l~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~ 226 (269)
|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999998643 3788999999999999999997554 478999999999999999873
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=4.9e-19 Score=153.89 Aligned_cols=185 Identities=16% Similarity=0.100 Sum_probs=148.0
Q ss_pred CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC-CCCCCCCCCE-EEccCCcCCC
Q 036300 77 SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI-EPSKLVNLRR-LALAGNQING 154 (269)
Q Consensus 77 ~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~-L~L~~n~l~~ 154 (269)
.+.+||..+ ++++++|+|++| .+....+..|..+++|++|+|++|.+.+.+|. .|.+++++++ +.+..|+++.
T Consensus 20 ~Lt~iP~~l----~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 20 KVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp TCCSCCTTC----CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCccCcCc----CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 345677655 478999999999 77765556799999999999999998766654 6789998775 6677899996
Q ss_pred CCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcC-CcCCCcCchhhcCCC-CCCEEEccCCccCCcchhhh
Q 036300 155 QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSY-NNLQEKIPKEIGNLH-NVTFLDLRSNNFLGGLVGSI 232 (269)
Q Consensus 155 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~ 232 (269)
..|..|..+++|++|++++|+++...+..+....++..+++.+ +++....+..+..+. .++.|++++|+|+. ++...
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~ 173 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSA 173 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTS
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhh
Confidence 6678899999999999999999866666677777888999866 567654445566654 68999999999984 55444
Q ss_pred hcCCCCCeEEccC-CCCCCCCCCccccccCcCCceecC
Q 036300 233 EEMVSLKEMVVSN-NPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 233 ~~l~~L~~L~l~~-N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
....+|+++++.+ |.+ +.+|...|..+++|+.|++
T Consensus 174 f~~~~L~~l~l~~~n~l--~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDI 209 (350)
T ss_dssp STTEEEEEEECTTCTTC--CCCCTTTTTTEECCSEEEC
T ss_pred ccccchhHHhhccCCcc--cCCCHHHhccCcccchhhc
Confidence 4567899999985 666 8888878999999999986
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=8.1e-19 Score=161.33 Aligned_cols=171 Identities=20% Similarity=0.217 Sum_probs=141.3
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
++..+....+.+..||..+ .++|++|++++| .+. .+| ..+++|++|++++|.+++ +|. +.+ +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N-~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQN-ALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC----CTTCSEEECCSS-CCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhH----cCCCCEEECcCC-CCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 5666766667777799876 378999999999 676 577 457999999999999996 777 665 999999
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
+++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|+.|+|++|+|+
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 99999995 776 68999999999999985 565 57899999999999997 677 65 89999999999998
Q ss_pred cchhhhhcCCCC-------CeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 227 GLVGSIEEMVSL-------KEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 227 ~~~~~~~~l~~L-------~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.+|. +.. +| +.|++++|.| ..+|. .+..+++|+.|+|
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l--~~lp~-~l~~l~~L~~L~L 237 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRI--THIPE-NILSLDPTCTIIL 237 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCC--CCCCG-GGGGSCTTEEEEC
T ss_pred chhh-HHH--hhhcccccceEEecCCCcc--eecCH-HHhcCCCCCEEEe
Confidence 5665 553 77 9999999999 57887 5666999999875
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.78 E-value=9.3e-19 Score=133.49 Aligned_cols=127 Identities=23% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCCCEEEcccCCCC-CCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEe
Q 036300 116 KNLQSLVLLEKGLT-GKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD 194 (269)
Q Consensus 116 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 194 (269)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 34444444444455555555544422 3344455555555555555544444444455555555
Q ss_pred CcCCcCCCc-CchhhcCCCCCCEEEccCCccCCcch---hhhhcCCCCCeEEcc
Q 036300 195 LSYNNLQEK-IPKEIGNLHNVTFLDLRSNNFLGGLV---GSIEEMVSLKEMVVS 244 (269)
Q Consensus 195 ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~ 244 (269)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555531 22445555555666665555554333 345556666665554
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=4.8e-20 Score=162.15 Aligned_cols=203 Identities=19% Similarity=0.172 Sum_probs=140.8
Q ss_pred ccccccccCCCCCCCcccCchh----HHhhcCCccEEEccCC--CCceeccCccc-------cCCCCCCEEEcccCCCCC
Q 036300 64 VCSQCKIFKPPLQSPIEIPSSN----WQKLANSLDSLEFGSN--PRLIGTIPTSI-------DYLKNLQSLVLLEKGLTG 130 (269)
Q Consensus 64 ~~~~l~~~~~~~~~~~~lp~~~----~~~l~~~L~~L~l~~n--~~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~ 130 (269)
.+..+..+....+.++...... +.. +++|++|+|++| ..+.+.+|..+ ..+++|++|+|++|.+++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHh-CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 4455566655555444322211 223 378888888886 13445555544 678888888888888886
Q ss_pred ----CCCCCCCCCCCCCEEEccCCcCCCCCccc----cCCC---------CCCCEEEccCCcCC-chhh---hhhcCccc
Q 036300 131 ----KLPIEPSKLVNLRRLALAGNQINGQIPAS----IGGL---------TKLLIFDLSRNNLS-GSML---LTLGKLAR 189 (269)
Q Consensus 131 ----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~ 189 (269)
.+|..+..+++|++|++++|.+++..+.. +..+ ++|++|++++|+++ ..++ ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 35666778888888888888886433333 3333 78889999988887 3444 45677888
Q ss_pred CCEEeCcCCcCCC-----cCchhhcCCCCCCEEEccCCccC----CcchhhhhcCCCCCeEEccCCCCCCCC----CCcc
Q 036300 190 LLKLDLSYNNLQE-----KIPKEIGNLHNVTFLDLRSNNFL----GGLVGSIEEMVSLKEMVVSNNPIFGGG----LNGI 256 (269)
Q Consensus 190 L~~L~ls~n~l~~-----~~p~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~----~p~~ 256 (269)
|++|++++|+++. ..|..+..+++|++|+|++|.++ ..+|..+..+++|++|++++|.+ .+. ++.
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~- 266 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-SARGAAAVVD- 266 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC-CHHHHHHHHH-
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC-chhhHHHHHH-
Confidence 9999999998873 23336778889999999999886 46777888889999999999998 433 232
Q ss_pred cc--ccCcCCceecC
Q 036300 257 RW--ENLQNLEIWIF 269 (269)
Q Consensus 257 ~~--~~l~~L~~L~l 269 (269)
.+ .++++|+.|+|
T Consensus 267 ~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 267 AFSKLENIGLQTLRL 281 (386)
T ss_dssp HHHTCSSCCCCEEEC
T ss_pred HHhhccCCCeEEEEC
Confidence 33 33788888875
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=2e-18 Score=137.50 Aligned_cols=130 Identities=23% Similarity=0.195 Sum_probs=112.8
Q ss_pred cCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCc-cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccC
Q 036300 71 FKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPT-SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG 149 (269)
Q Consensus 71 ~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 149 (269)
+....+.+++||..+ ..++++|++++| .+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 13 l~~s~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDI----PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EECTTSCCSSCCSCC----CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEcCCCCcCcCccCC----CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 334445668888765 358999999999 67765554 489999999999999999988899999999999999999
Q ss_pred CcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc
Q 036300 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP 205 (269)
Q Consensus 150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 205 (269)
|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99997777789999999999999999998889999999999999999999987544
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=3.1e-21 Score=177.74 Aligned_cols=195 Identities=18% Similarity=0.142 Sum_probs=147.3
Q ss_pred cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCC-------------ceeccCccccCCCCCCEEE-cccCCCCC
Q 036300 65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPR-------------LIGTIPTSIDYLKNLQSLV-LLEKGLTG 130 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~ 130 (269)
+..+..+..+.+.+..||..+.. +++|+.|++++| . ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~--l~~L~~L~l~~n-~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELES--CKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHH--HHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHH--HHHHHHhccccc-hhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 44444555555666777777632 477888887655 3 3455666677777777777 44443221
Q ss_pred CCCC------CCCC--CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300 131 KLPI------EPSK--LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202 (269)
Q Consensus 131 ~~p~------~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 202 (269)
++. .+.. ...|++|++++|.++ .+|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|++++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 110 0000 125899999999999 5786 999999999999999999 789999999999999999999997
Q ss_pred cCchhhcCCCCCCEEEccCCccCCcc-hhhhhcCCCCCeEEccCCCCCCCCCCc--cccccCcCCceecC
Q 036300 203 KIPKEIGNLHNVTFLDLRSNNFLGGL-VGSIEEMVSLKEMVVSNNPIFGGGLNG--IRWENLQNLEIWIF 269 (269)
Q Consensus 203 ~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~p~--~~~~~l~~L~~L~l 269 (269)
+| .++.+++|+.|+|++|.+++.. |..++.+++|+.|++++|++ .+..|. ..+..+|+|+.|++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 67 7999999999999999999876 99999999999999999999 444332 13445899999875
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=2.8e-20 Score=162.40 Aligned_cols=188 Identities=20% Similarity=0.243 Sum_probs=143.6
Q ss_pred CCcccCchhHHhhcCCccEEEccCCCCceeccC----ccccCCC-CCCEEEcccCCCCCCCCCCCCCC-----CCCCEEE
Q 036300 77 SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP----TSIDYLK-NLQSLVLLEKGLTGKLPIEPSKL-----VNLRRLA 146 (269)
Q Consensus 77 ~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~ 146 (269)
..|.+|... ...++|++|++++| .+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|+
T Consensus 10 ~~~~~~~~~--~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 10 GSNPVEEFT--SIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp TCCHHHHHH--TSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred chHHHHHHH--hCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 344555533 44467999999999 6777655 6788888 99999999999997777666664 9999999
Q ss_pred ccCCcCCCCCccc----cCCC-CCCCEEEccCCcCCchhhhhh----cC-cccCCEEeCcCCcCCCcCc----hhhcCCC
Q 036300 147 LAGNQINGQIPAS----IGGL-TKLLIFDLSRNNLSGSMLLTL----GK-LARLLKLDLSYNNLQEKIP----KEIGNLH 212 (269)
Q Consensus 147 L~~n~l~~~~p~~----l~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~ls~n~l~~~~p----~~~~~l~ 212 (269)
+++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|++.+..+ ..+...+
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 9999999766654 3444 899999999999987666544 33 3699999999999986443 4445565
Q ss_pred -CCCEEEccCCccCCcchhhhh----cC-CCCCeEEccCCCCCCCC----CCcccccc-CcCCceecC
Q 036300 213 -NVTFLDLRSNNFLGGLVGSIE----EM-VSLKEMVVSNNPIFGGG----LNGIRWEN-LQNLEIWIF 269 (269)
Q Consensus 213 -~L~~L~L~~N~l~~~~~~~~~----~l-~~L~~L~l~~N~l~~~~----~p~~~~~~-l~~L~~L~l 269 (269)
+|++|+|++|++++..+..+. .+ ++|++|++++|.+ .+. ++. .+.. .++|+.|++
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~~~~~~~l~~-~l~~~~~~L~~L~L 232 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAY-IFSSIPNHVVSLNL 232 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGSCHHHHHH-HHHHSCTTCCEEEC
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC-ChhHHHHHHH-HHhcCCCCceEEEC
Confidence 999999999999877665444 44 6999999999999 332 333 3434 458988875
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.77 E-value=1.2e-18 Score=132.85 Aligned_cols=129 Identities=24% Similarity=0.305 Sum_probs=115.3
Q ss_pred cCCccEEEccCCCCce-eccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCE
Q 036300 90 ANSLDSLEFGSNPRLI-GTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLI 168 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 168 (269)
.++|+.|++++| .+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 378999999999 787 68898899999999999999999965 78899999999999999999778888888999999
Q ss_pred EEccCCcCCch-hhhhhcCcccCCEEeCcCCcCCCcCc---hhhcCCCCCCEEEccC
Q 036300 169 FDLSRNNLSGS-MLLTLGKLARLLKLDLSYNNLQEKIP---KEIGNLHNVTFLDLRS 221 (269)
Q Consensus 169 L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~L~~ 221 (269)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999864 45789999999999999999997655 4788999999999863
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=6.8e-18 Score=134.55 Aligned_cols=128 Identities=23% Similarity=0.272 Sum_probs=108.6
Q ss_pred cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 036300 94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR 173 (269)
Q Consensus 94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (269)
+++++++| .+. .+|..+. ++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~-~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 57889888 554 5676554 68999999999998 7788899999999999999999976677889999999999999
Q ss_pred CcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300 174 NNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 174 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
|++++..+..|..+++|+.|++++|+++...+..+..+++|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99997777788899999999999999987555668889999999999998864
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=9.2e-19 Score=157.34 Aligned_cols=149 Identities=23% Similarity=0.289 Sum_probs=90.2
Q ss_pred ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300 93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS 172 (269)
Q Consensus 93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (269)
+++|++++| .+.+ +|.. .++|++|++++|.+++ +|.. +++|++|++++|.++ .+|.. .++|++|+++
T Consensus 73 l~~L~l~~~-~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 73 AHELELNNL-GLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS 139 (454)
T ss_dssp CSEEECTTS-CCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred CCEEEecCC-cccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC---CCCCCEEECc
Confidence 355555555 3433 2321 2456666666666664 4432 256666666666666 23321 1567777777
Q ss_pred CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCC
Q 036300 173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGG 252 (269)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 252 (269)
+|.+++ +| .++.+++|++|++++|++++ +|.. ..+|++|++++|.+++ +| .++.+++|++|++++|.+ ..
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l--~~ 209 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL--KK 209 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC--SS
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC--Cc
Confidence 777774 55 47777777777777777774 4543 2477777777777775 44 577777788888888877 33
Q ss_pred CCccccccCcCCceec
Q 036300 253 LNGIRWENLQNLEIWI 268 (269)
Q Consensus 253 ~p~~~~~~l~~L~~L~ 268 (269)
+|. . .++|++|+
T Consensus 210 l~~-~---~~~L~~L~ 221 (454)
T 1jl5_A 210 LPD-L---PLSLESIV 221 (454)
T ss_dssp CCC-C---CTTCCEEE
T ss_pred CCC-C---cCcccEEE
Confidence 553 1 23555554
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=3.7e-17 Score=146.90 Aligned_cols=173 Identities=20% Similarity=0.220 Sum_probs=124.4
Q ss_pred cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300 67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146 (269)
Q Consensus 67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 146 (269)
+++.+....+....+|.. .++|++|++++| .+.+ +|.. .++|++|++++|.+++ +| .++++++|++|+
T Consensus 92 ~L~~L~l~~n~l~~lp~~-----~~~L~~L~l~~n-~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL-----PQSLKSLLVDNN-NLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp TCSEEECCSSCCSSCCCC-----CTTCCEEECCSS-CCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCEEEccCCcCCccccc-----cCCCcEEECCCC-ccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 444454555555667753 267888888887 5554 3321 1678888888888885 66 588888888888
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
+++|+++ .+|..+ ++|++|++++|.+++ +| .++.+++|+.|++++|++++ +|.. .++|++|++++|.++
T Consensus 160 l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 8888888 466543 478888888888885 55 57888888999998888875 4542 258889999999887
Q ss_pred cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 227 GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
.+| .++.+++|++|++++|++ ..+|. . +++|++|++
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l--~~l~~-~---~~~L~~L~l 264 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLL--KTLPD-L---PPSLEALNV 264 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCC--SSCCS-C---CTTCCEEEC
T ss_pred ccc-ccCCCCCCCEEECCCCcC--Ccccc-c---ccccCEEEC
Confidence 566 488889999999999988 44654 2 356666653
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-17 Score=128.93 Aligned_cols=133 Identities=26% Similarity=0.222 Sum_probs=109.7
Q ss_pred ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300 93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS 172 (269)
Q Consensus 93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (269)
.+.++++++ .+. .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~-~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSK-GLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSS-CCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCC-CCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 478899888 554 456544 3789999999999996666678899999999999999985555667899999999999
Q ss_pred CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300 173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 229 (269)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999997767778889999999999999987555567889999999999999987654
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=7.7e-17 Score=149.76 Aligned_cols=71 Identities=20% Similarity=0.103 Sum_probs=51.6
Q ss_pred ccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300 188 ARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW 267 (269)
Q Consensus 188 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L 267 (269)
++|+.|++++|++++ +| ..+++|+.|++++|+++ .+|. .+++|++|++++|.+ ..+|. .+.++++|+.|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L--~~lp~-~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQL--TRLPE-SLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC--CSCCG-GGGGSCTTCEE
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCC--CcCCH-HHhhccccCEE
Confidence 556667777776664 44 34567788888888777 3443 567888899999988 47775 68888999888
Q ss_pred cC
Q 036300 268 IF 269 (269)
Q Consensus 268 ~l 269 (269)
+|
T Consensus 290 ~L 291 (622)
T 3g06_A 290 NL 291 (622)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.4e-19 Score=162.43 Aligned_cols=174 Identities=14% Similarity=0.078 Sum_probs=80.5
Q ss_pred CccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCCCCC-----CCCCCCCCCCCEEEccCCcCCCC----Ccc
Q 036300 92 SLDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLTGKL-----PIEPSKLVNLRRLALAGNQINGQ----IPA 158 (269)
Q Consensus 92 ~L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~~----~p~ 158 (269)
+|++|++++| .+.+. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.++.. ++.
T Consensus 200 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 200 QLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 4555555555 34332 3444445555555555555554311 11122345555666665555532 344
Q ss_pred ccCCCCCCCEEEccCCcCCchhhhhhcC-----cccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCcch
Q 036300 159 SIGGLTKLLIFDLSRNNLSGSMLLTLGK-----LARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~ 229 (269)
.+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 4444555566666655554332222221 13455555555554432 23334444555555555555544333
Q ss_pred hhhhc-----CCCCCeEEccCCCCCCC----CCCccccccCcCCceec
Q 036300 230 GSIEE-----MVSLKEMVVSNNPIFGG----GLNGIRWENLQNLEIWI 268 (269)
Q Consensus 230 ~~~~~-----l~~L~~L~l~~N~l~~~----~~p~~~~~~l~~L~~L~ 268 (269)
..+.. .++|++|++++|.+ ++ .++. .+..+++|++|+
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i-~~~~~~~l~~-~l~~~~~L~~L~ 404 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDV-SDSSCSSLAA-TLLANHSLRELD 404 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHH-HHHHCCCCCEEE
T ss_pred HHHHHHHcCCCCceEEEECCCCCC-ChhhHHHHHH-HHHhCCCccEEE
Confidence 33322 34555555555555 22 3332 344455555554
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=8.5e-17 Score=126.14 Aligned_cols=125 Identities=24% Similarity=0.213 Sum_probs=87.5
Q ss_pred CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300 76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ 155 (269)
Q Consensus 76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 155 (269)
+.+.++|..+ .++|++|++++| .+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 17 ~~l~~~p~~~----~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 91 (177)
T 2o6r_A 17 KGLTSVPTGI----PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91 (177)
T ss_dssp SCCSSCCTTC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCCCCC----CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc
Confidence 4455666544 367778888877 56655555667777888888888877755555567777888888888887755
Q ss_pred CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc
Q 036300 156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP 205 (269)
Q Consensus 156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 205 (269)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 55556777788888888887775555556677778888888887776443
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=5.7e-17 Score=129.21 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=105.4
Q ss_pred CCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 036300 74 PLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQIN 153 (269)
Q Consensus 74 ~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 153 (269)
..+.+.++|..+ .++|++|++++| .+. .+|..|..+++|++|++++|.+++..+..|.++++|++|+|++|.++
T Consensus 18 ~~~~l~~ip~~~----~~~l~~L~L~~n-~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 18 SNKGLKVLPKGI----PRDVTELYLDGN-QFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TTSCCSSCCSCC----CTTCCEEECCSS-CCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCcCCCCC----CCCCCEEECCCC-cCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 345567788765 468999999999 565 67888999999999999999999777788999999999999999999
Q ss_pred CCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300 154 GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202 (269)
Q Consensus 154 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 202 (269)
+..|..|..+++|++|++++|.++...+..|..+++|+.|++++|.+..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7777789999999999999999996666678889999999999998864
No 123
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=8.7e-19 Score=157.18 Aligned_cols=156 Identities=16% Similarity=0.163 Sum_probs=77.6
Q ss_pred CccEEEccCCCCcee----ccCccccCCCCCCEEEcccCCCCCCCCCCC-----CCCCCCCEEEccCCcCCCC----Ccc
Q 036300 92 SLDSLEFGSNPRLIG----TIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-----SKLVNLRRLALAGNQINGQ----IPA 158 (269)
Q Consensus 92 ~L~~L~l~~n~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~ 158 (269)
+|++|++++| .+.. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++. ++.
T Consensus 86 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 4677777766 4553 345666666677777777666653222211 1234566666666665532 233
Q ss_pred ccCCCCCCCEEEccCCcCCchhhhhhc-----CcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCcch
Q 036300 159 SIGGLTKLLIFDLSRNNLSGSMLLTLG-----KLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGGLV 229 (269)
Q Consensus 159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~ 229 (269)
.+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++...
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 344455666666666655433332222 133555555555555432 23444445555555555555443211
Q ss_pred -----hhhhcCCCCCeEEccCCCC
Q 036300 230 -----GSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 230 -----~~~~~l~~L~~L~l~~N~l 248 (269)
..+..+++|++|++++|.+
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHHhcCCCCceEEECcCCCC
Confidence 1111244555555555554
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=2.3e-16 Score=146.58 Aligned_cols=174 Identities=24% Similarity=0.259 Sum_probs=98.1
Q ss_pred ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300 66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL 145 (269)
Q Consensus 66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 145 (269)
.++..+....+.+..||.. +++|++|++++| .+.+ +|. .+++|++|++++|.+++ +|. .+++|++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~~-----l~~L~~L~Ls~N-~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPAL-----PPELRTLEVSGN-QLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCSCCCCC-----CTTCCEEEECSC-CCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCCCCCCc-----CCCCCEEEcCCC-cCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEE
Confidence 4555555555667777762 478888888888 5553 554 56777777887777773 443 34555556
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhh---h--------------cCcccCCEEeCcCCcCCCcCchhh
Q 036300 146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLT---L--------------GKLARLLKLDLSYNNLQEKIPKEI 208 (269)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~---~--------------~~l~~L~~L~ls~n~l~~~~p~~~ 208 (269)
++++|.++ .+|.. +++|++|++++|.+++ +|.. + ..+++|+.|++++|++++ +|..+
T Consensus 127 ~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~ 200 (622)
T 3g06_A 127 WIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLP 200 (622)
T ss_dssp ECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCC
T ss_pred ECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCcc
Confidence 66555555 34432 2455555555555542 1111 1 112555666666665553 22211
Q ss_pred c-----------------CCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 209 G-----------------NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 209 ~-----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
. .+++|+.|++++|.+++ +| ..+++|++|++++|.+ ..+|. .+++|+.|++
T Consensus 201 ~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L--~~lp~----~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRL--TSLPM----LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC--SCCCC----CCTTCCEEEC
T ss_pred chhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCC--CcCCc----ccccCcEEeC
Confidence 1 12556666666666664 33 3456677777777777 35554 4566666654
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.70 E-value=1.4e-19 Score=144.79 Aligned_cols=150 Identities=23% Similarity=0.268 Sum_probs=128.2
Q ss_pred CCccEEEccCCCCceeccCc------cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCC
Q 036300 91 NSLDSLEFGSNPRLIGTIPT------SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLT 164 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 164 (269)
..++.++++.+ .+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus 18 ~~l~~l~l~~~-~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEE-ECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchhee-EeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 67777777777 67777666 89999999999999999995 77 8899999999999999999 7888778889
Q ss_pred CCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc-hhhcCCCCCCEEEccCCccCCcchh----------hhh
Q 036300 165 KLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP-KEIGNLHNVTFLDLRSNNFLGGLVG----------SIE 233 (269)
Q Consensus 165 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~ 233 (269)
+|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++.+|. .+.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 99999999999985 55 58889999999999999986322 4688999999999999999876554 378
Q ss_pred cCCCCCeEEccCCCC
Q 036300 234 EMVSLKEMVVSNNPI 248 (269)
Q Consensus 234 ~l~~L~~L~l~~N~l 248 (269)
.+++|++|+ +|.+
T Consensus 172 ~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 172 RLPNLKKLD--GMPV 184 (198)
T ss_dssp HCSSCSEEC--CGGG
T ss_pred hCCCcEEEC--Cccc
Confidence 899999987 7777
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.70 E-value=7.8e-17 Score=126.34 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=66.5
Q ss_pred cCCCCCCEEEcccCCCCCCCCCCCCCCC-CCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC
Q 036300 113 DYLKNLQSLVLLEKGLTGKLPIEPSKLV-NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL 191 (269)
Q Consensus 113 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 191 (269)
..+++|+.|++++|.++ .+|. +..+. +|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34455555555555555 2332 33332 55555555555552 2 3455555555555555555533233335555555
Q ss_pred EEeCcCCcCCCcCch--hhcCCCCCCEEEccCCccCCcchh----hhhcCCCCCeEEccCCCC
Q 036300 192 KLDLSYNNLQEKIPK--EIGNLHNVTFLDLRSNNFLGGLVG----SIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 192 ~L~ls~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l 248 (269)
+|++++|++.. +|. .+..+++|+.|++++|.++. +|. .+..+++|++|++++|.+
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555542 333 45555566666666665552 233 255566666666666554
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.7e-17 Score=157.03 Aligned_cols=121 Identities=26% Similarity=0.363 Sum_probs=75.1
Q ss_pred CchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccC
Q 036300 82 PSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG 161 (269)
Q Consensus 82 p~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 161 (269)
|...|..+ +.|+.|+|++| .+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|.
T Consensus 216 ~~~~~~~l-~~L~~L~Ls~n-~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 216 PKDSKYDD-QLWHALDLSNL-QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp ------CC-CCCCEEECTTS-CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred ChhhhccC-CCCcEEECCCC-CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 33333443 66667777666 444 45555556666777777777666 56666666666777777777666 5666666
Q ss_pred CCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhh
Q 036300 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208 (269)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~ 208 (269)
.+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 6666777777766665 556566666667777777776666555544
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=1.8e-16 Score=124.19 Aligned_cols=129 Identities=21% Similarity=0.187 Sum_probs=108.9
Q ss_pred CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC
Q 036300 135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV 214 (269)
Q Consensus 135 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 214 (269)
.+.++.+|++|++++|.++ .+|......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4567889999999999999 5665333345999999999999964 678899999999999999997555656899999
Q ss_pred CEEEccCCccCCcchh--hhhcCCCCCeEEccCCCCCCCCCCcc---ccccCcCCceecC
Q 036300 215 TFLDLRSNNFLGGLVG--SIEEMVSLKEMVVSNNPIFGGGLNGI---RWENLQNLEIWIF 269 (269)
Q Consensus 215 ~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~p~~---~~~~l~~L~~L~l 269 (269)
++|++++|.++ .+|. .+..+++|++|++++|++ ..+|.. .+..+++|+.|++
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i--~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV--TNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG--GGSTTHHHHHHHHCTTCSEETT
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC--CCcHhHHHHHHHHCCccceeCC
Confidence 99999999997 4555 889999999999999999 566753 4889999999875
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.65 E-value=3.3e-19 Score=142.61 Aligned_cols=151 Identities=23% Similarity=0.286 Sum_probs=128.6
Q ss_pred ccCCCCCCEEEcccCCCCCCCCC------CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhc
Q 036300 112 IDYLKNLQSLVLLEKGLTGKLPI------EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG 185 (269)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 185 (269)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 55667788888888888887776 78899999999999999994 77 8899999999999999998 6777788
Q ss_pred CcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch-hhhhcCCCCCeEEccCCCCCCCCCCc---------
Q 036300 186 KLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV-GSIEEMVSLKEMVVSNNPIFGGGLNG--------- 255 (269)
Q Consensus 186 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~p~--------- 255 (269)
.+++|+.|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++ .+..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL-YNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH-HHHHHTTTTHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc-ccccccccchHHHHH
Confidence 88999999999999986 55 68889999999999999986433 5789999999999999999 554442
Q ss_pred cccccCcCCceec
Q 036300 256 IRWENLQNLEIWI 268 (269)
Q Consensus 256 ~~~~~l~~L~~L~ 268 (269)
..+..+++|+.|+
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 1377899999886
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.1e-15 Score=131.52 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=89.3
Q ss_pred CCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCC-EEEccCCccCCcchhhhhcCCCCCeE
Q 036300 163 LTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVT-FLDLRSNNFLGGLVGSIEEMVSLKEM 241 (269)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L 241 (269)
+++|+.+++++|+++...+..|..+.+|+.+++..| +....+..|.++++|+ .+++.+ .++...+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999998666678999999999999998 7766667899999999 999988 7776677899999999999
Q ss_pred EccCCCCCCCCCCccccccCcCCceec
Q 036300 242 VVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 242 ~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
++++|.+ ..++...|.++++|+.++
T Consensus 303 ~l~~n~i--~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKI--TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCC--CEECTTTTCTTCCCCEEE
T ss_pred EeCCCcc--CccchhhhcCCcchhhhc
Confidence 9999999 778888999999999886
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2e-15 Score=139.06 Aligned_cols=158 Identities=21% Similarity=0.264 Sum_probs=125.4
Q ss_pred CCcccCchhHHhhcCCccEEE-ccCCCCceeccCc------cccC--CCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEc
Q 036300 77 SPIEIPSSNWQKLANSLDSLE-FGSNPRLIGTIPT------SIDY--LKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLAL 147 (269)
Q Consensus 77 ~~~~lp~~~~~~l~~~L~~L~-l~~n~~l~~~~p~------~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 147 (269)
..+.+|.. +..+ ++|+.|+ ++.| .+.. ++. .+.. ...|+.|++++|.+++ +|. ++.+++|++|++
T Consensus 397 ~~~~~~~~-l~~l-~~L~~L~~l~~n-~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~L 470 (567)
T 1dce_A 397 PLLYEKET-LQYF-STLKAVDPMRAA-YLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDL 470 (567)
T ss_dssp TGGGHHHH-HHHH-HHHHHHCGGGHH-HHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEEC
T ss_pred cccCCHHH-HHHH-HhcccCcchhhc-ccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeec
Confidence 34444443 3454 7788888 4544 2211 110 0111 1358999999999995 776 999999999999
Q ss_pred cCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcC-chhhcCCCCCCEEEccCCccCC
Q 036300 148 AGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI-PKEIGNLHNVTFLDLRSNNFLG 226 (269)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~ 226 (269)
++|.++ .+|..+..+++|++|++++|.+++ +| .++.+++|+.|++++|++++.. |..++.+++|+.|+|++|.+++
T Consensus 471 s~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 471 SHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred Cccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 999999 889999999999999999999996 67 8999999999999999999876 8999999999999999999987
Q ss_pred cch---hhhhcCCCCCeEEc
Q 036300 227 GLV---GSIEEMVSLKEMVV 243 (269)
Q Consensus 227 ~~~---~~~~~l~~L~~L~l 243 (269)
.+| ..+..+++|+.|++
T Consensus 548 ~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSCTTHHHHHCTTCSEEEC
T ss_pred CccHHHHHHHHCcccCccCC
Confidence 644 23456899999875
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=8.7e-15 Score=114.08 Aligned_cols=104 Identities=25% Similarity=0.277 Sum_probs=55.6
Q ss_pred cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 036300 94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR 173 (269)
Q Consensus 94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (269)
+++++++| .+.. +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n-~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGK-SLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTS-CCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45666665 3333 444332 5556666666666655455555566666666666665533333445555555555555
Q ss_pred CcCCchhhhhhcCcccCCEEeCcCCcCC
Q 036300 174 NNLSGSMLLTLGKLARLLKLDLSYNNLQ 201 (269)
Q Consensus 174 n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 201 (269)
|++++..+..|..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555443444555555555555555554
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=5.1e-15 Score=115.40 Aligned_cols=109 Identities=26% Similarity=0.241 Sum_probs=94.7
Q ss_pred CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCc
Q 036300 117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196 (269)
Q Consensus 117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 196 (269)
..+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 5777664 889999999999997778889999999999999999997777778899999999999
Q ss_pred CCcCCCcCchhhcCCCCCCEEEccCCccCCcc
Q 036300 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228 (269)
Q Consensus 197 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 228 (269)
+|++++..+..+..+++|++|+|++|.++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999766667889999999999999988653
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.1e-14 Score=113.91 Aligned_cols=107 Identities=24% Similarity=0.250 Sum_probs=92.3
Q ss_pred CCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcC
Q 036300 118 LQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSY 197 (269)
Q Consensus 118 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 197 (269)
-+.+++++|+++ .+|..+. ++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999997 7787664 8899999999999977788899999999999999999976666678899999999999
Q ss_pred CcCCCcCchhhcCCCCCCEEEccCCccCCc
Q 036300 198 NNLQEKIPKEIGNLHNVTFLDLRSNNFLGG 227 (269)
Q Consensus 198 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 227 (269)
|++++..+..+..+++|++|+|++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999975555688999999999999998854
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=2.1e-14 Score=112.34 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=92.7
Q ss_pred ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300 93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS 172 (269)
Q Consensus 93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (269)
-+.+++++| .+ +.+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 14 ~~~l~~~~n-~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 378999999 55 56787665 899999999999998888899999999999999999996555567899999999999
Q ss_pred CCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300 173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202 (269)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 202 (269)
+|++++..+..|..+++|++|++++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999996666669999999999999999985
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.52 E-value=1e-15 Score=133.98 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=122.4
Q ss_pred hhcCCccEEEccCCCCceeccCccccC-----CCCCCEEEcccCCCCCCCCCCC-CCCCCCCEEEccCCcCCCCCcccc-
Q 036300 88 KLANSLDSLEFGSNPRLIGTIPTSIDY-----LKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGNQINGQIPASI- 160 (269)
Q Consensus 88 ~l~~~L~~L~l~~n~~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l- 160 (269)
...+.|+.|++++| .+.......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 69 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 34588999999999 676543333332 3799999999999875333233 346789999999999985433333
Q ss_pred ----CCCCCCCEEEccCCcCCch----hhhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCc-
Q 036300 161 ----GGLTKLLIFDLSRNNLSGS----MLLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGG- 227 (269)
Q Consensus 161 ----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~- 227 (269)
...++|++|++++|.++.. ++..+...++|++|++++|.+.+. ++..+...++|++|+|++|.+++.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 3568899999999999753 445567889999999999998753 345667788999999999999863
Q ss_pred ---chhhhhcCCCCCeEEccCCCC
Q 036300 228 ---LVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 228 ---~~~~~~~l~~L~~L~l~~N~l 248 (269)
+...+...++|++|++++|.+
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCC
Confidence 445566789999999999999
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.48 E-value=4e-15 Score=137.39 Aligned_cols=152 Identities=10% Similarity=0.013 Sum_probs=72.4
Q ss_pred CCCCCCEEEcccCCCCCC----CCCCCCCCCCCCEEEccCCcCCC----CCccccCCCCCCCEEEccCCcCCchhhhhhc
Q 036300 114 YLKNLQSLVLLEKGLTGK----LPIEPSKLVNLRRLALAGNQING----QIPASIGGLTKLLIFDLSRNNLSGSMLLTLG 185 (269)
Q Consensus 114 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 185 (269)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 445555555555554432 11122344555555555555541 222233445555555555555542 444455
Q ss_pred CcccCCEEeCcCCcCC---CcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCc
Q 036300 186 KLARLLKLDLSYNNLQ---EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQ 262 (269)
Q Consensus 186 ~l~~L~~L~ls~n~l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~ 262 (269)
.+++|+.|+++..... ...+..+..+++|+.|+++++. ...+|..+..+++|++|++++|.+ .+......+..++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l-~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALL-ETEDHCTLIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCC-CHHHHHHHHTTCT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcC-CHHHHHHHHHhCc
Confidence 5555555555432111 1112223334444444444432 224455566666777777777765 3322222345666
Q ss_pred CCceec
Q 036300 263 NLEIWI 268 (269)
Q Consensus 263 ~L~~L~ 268 (269)
+|+.|+
T Consensus 319 ~L~~L~ 324 (592)
T 3ogk_B 319 NLEVLE 324 (592)
T ss_dssp TCCEEE
T ss_pred CCCEEe
Confidence 666654
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=2.4e-14 Score=132.08 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=28.5
Q ss_pred CCccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCCC----CCCCCCCCCCCCCEEEccCCcC
Q 036300 91 NSLDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLTG----KLPIEPSKLVNLRRLALAGNQI 152 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l 152 (269)
++|++|++++| .+.+. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+
T Consensus 164 ~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 164 RKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp TTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred CCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 55666666655 44333 22233344555555555555541 1122233445555555555444
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.43 E-value=5.1e-13 Score=115.47 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=92.1
Q ss_pred CEEEcccC-CCCCCCCCCCCCCCCCCEEEccC-CcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCc
Q 036300 119 QSLVLLEK-GLTGKLPIEPSKLVNLRRLALAG-NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196 (269)
Q Consensus 119 ~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 196 (269)
..++++++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 888 5888 99999999999996 99997666889999999999999999998888899999999999999
Q ss_pred CCcCCCcCchhhcCCCCCCEEEccCCccCCc
Q 036300 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGG 227 (269)
Q Consensus 197 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 227 (269)
+|++++..+..+..++ |+.|+|.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999975555565555 99999999999853
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=8.5e-13 Score=113.40 Aligned_cols=174 Identities=11% Similarity=0.000 Sum_probs=130.4
Q ss_pred cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCC----CCCCCCCC----
Q 036300 65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGL----TGKLPIEP---- 136 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~~---- 136 (269)
|.++..+.... .+..|++..|.+. ++|+.|++++| .+....+.+|..+.++..+.+..+.. ......+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~-~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGC-DNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTC-TTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-cccchhHHHhhcC-cccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 56666665554 5667777777665 77888888877 56555556677666666665544211 00000001
Q ss_pred ----------------------------------------------CCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300 137 ----------------------------------------------SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD 170 (269)
Q Consensus 137 ----------------------------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (269)
..+++|+.+++++|+++..-+..|.++.+|+.++
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 0278999999999999944456899999999999
Q ss_pred ccCCcCCchhhhhhcCcccCC-EEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEc
Q 036300 171 LSRNNLSGSMLLTLGKLARLL-KLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVV 243 (269)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 243 (269)
+.+| ++...+.+|.++.+|+ .+++.. .++...+..|.++++|+.+++++|.++...+.+|.++++|+.+..
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9998 7766677899999999 999998 777667789999999999999999999777889999999998864
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=8.3e-13 Score=114.11 Aligned_cols=106 Identities=23% Similarity=0.181 Sum_probs=90.8
Q ss_pred cEEEccCCCCceeccCccccCCCCCCEEEccc-CCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300 94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLE-KGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS 172 (269)
Q Consensus 94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (269)
..++.++++.+ ..+|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l-~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGAL-DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCC-TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCC-CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688776234 45888 99999999999996 99997777889999999999999999998888889999999999999
Q ss_pred CCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300 173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202 (269)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 202 (269)
+|++++..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999966556666555 9999999999974
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=7.5e-12 Score=110.49 Aligned_cols=192 Identities=11% Similarity=0.098 Sum_probs=118.4
Q ss_pred cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCE
Q 036300 65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRR 144 (269)
Q Consensus 65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 144 (269)
|.++..+....+.+..||...|. ...|+.+.+..+ +...-..+|..+++|+.+++..+ ++..-..+|.+ .+|+.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~--~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV--YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT--TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred cccCCeeecCCCcceEechhhEe--ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 34444433333344444444444 244555555432 33333345555666666666553 33233334444 55666
Q ss_pred EEccCCcCCCCCccccCCCCCCCEEEccCCcCC-----chhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEc
Q 036300 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLS-----GSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219 (269)
Q Consensus 145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 219 (269)
+.+. +.++..-...|.+|++|+.+.+.+|.+. ...+..|..+++|+.+.+.. .++......|.++++|+.+.+
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 6663 3344233567788888888888877664 34456788888888888884 466555677888889999998
Q ss_pred cCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCc-CCceec
Q 036300 220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQ-NLEIWI 268 (269)
Q Consensus 220 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~-~L~~L~ 268 (269)
..| ++.....+|.++ +|+.+++.+|.+ ..++...|..++ .++.|.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~--~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTP--PQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSC--CBCCCSSCCCSCTTCCEEE
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCC--cccccccccCCCCCccEEE
Confidence 554 665666788888 899999999887 555555677774 555554
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=1.4e-14 Score=133.72 Aligned_cols=176 Identities=16% Similarity=0.144 Sum_probs=97.9
Q ss_pred cCCccEEEccCCCCceecc-CccccCCCCCCEEEcccCCCCCC-CCCCCCC-----------------------------
Q 036300 90 ANSLDSLEFGSNPRLIGTI-PTSIDYLKNLQSLVLLEKGLTGK-LPIEPSK----------------------------- 138 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~----------------------------- 138 (269)
+++|++|++++| .+.+.. +..+..+++|+.|++++| ++.. ++.....
T Consensus 288 ~~~L~~L~L~~~-~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 288 CSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HTTCCEEECTTC-CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hCCCCEEEccCC-CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 377888888888 455432 223456677777777766 2211 1101112
Q ss_pred -----CCCCCEEEccCCcCCCCCccccC-CCCCCCEEEcc--C----CcCCc-----hhhhhhcCcccCCEEeCcCCcCC
Q 036300 139 -----LVNLRRLALAGNQINGQIPASIG-GLTKLLIFDLS--R----NNLSG-----SMLLTLGKLARLLKLDLSYNNLQ 201 (269)
Q Consensus 139 -----l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~--~----n~l~~-----~~~~~~~~l~~L~~L~ls~n~l~ 201 (269)
+++|++|.+..|.+++..+..+. .+++|++|+++ + +.+++ .++..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 34444444444444433222232 35666666666 2 33431 1222344556666666655 454
Q ss_pred CcCchhhcC-CCCCCEEEccCCccCCcchhhh-hcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 202 EKIPKEIGN-LHNVTFLDLRSNNFLGGLVGSI-EEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 202 ~~~p~~~~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
+..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+ ++.........+++|++|++
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWM 513 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEE
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEee
Confidence 433344443 6778888888888776544444 6678888888888888 44333334456777877764
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=6.5e-12 Score=110.87 Aligned_cols=180 Identities=10% Similarity=0.053 Sum_probs=100.7
Q ss_pred CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300 78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP 157 (269)
Q Consensus 78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 157 (269)
+..|+...|.+ ..|+.+.+.++ +...-+.+|..+++|+.+++..|.++.....+|. +.+|+.+.+..+ ++..-.
T Consensus 146 i~~I~~~aF~~--~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~ 219 (401)
T 4fdw_A 146 LKSIGDMAFFN--STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGS 219 (401)
T ss_dssp CCEECTTTTTT--CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECT
T ss_pred ccEECHHhcCC--CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehh
Confidence 45566666554 35666666543 3444445666666677777766666533223333 455555555533 332223
Q ss_pred cccCCCCCCCEEEccCC---------------------cCCchhhhhhcCcccCCEEeCcCCcCC-----CcCchhhcCC
Q 036300 158 ASIGGLTKLLIFDLSRN---------------------NLSGSMLLTLGKLARLLKLDLSYNNLQ-----EKIPKEIGNL 211 (269)
Q Consensus 158 ~~l~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~l 211 (269)
.+|.++++|+.+++..+ .++.....+|..+++|+.+.+.+|.+. ...+..|.++
T Consensus 220 ~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c 299 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC 299 (401)
T ss_dssp TTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred hHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence 34555555555555432 233233455666667777776666553 2334556667
Q ss_pred CCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
++|+.+.+. +.++.....+|.++.+|+.+.+..| + ..+....|.++ +|+.++
T Consensus 300 ~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l--~~I~~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 300 PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V--TQINFSAFNNT-GIKEVK 351 (401)
T ss_dssp TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C--CEECTTSSSSS-CCCEEE
T ss_pred ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c--cEEcHHhCCCC-CCCEEE
Confidence 777777776 3455455566777777777777444 4 44555566666 666654
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=7.8e-14 Score=128.69 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=38.7
Q ss_pred CCccEEEccCCCCceeccCcccc-CCCCCCEEEcccC-CCCCC-CCCCCCCCCCCCEEEccCCcCCCCCcccc----CCC
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEK-GLTGK-LPIEPSKLVNLRRLALAGNQINGQIPASI----GGL 163 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l 163 (269)
++|++|++++| .+.+..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+ ..+
T Consensus 105 ~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 55555555555 44444443333 3555555555555 22211 22222345555555555555443222222 234
Q ss_pred CCCCEEEccCCc
Q 036300 164 TKLLIFDLSRNN 175 (269)
Q Consensus 164 ~~L~~L~l~~n~ 175 (269)
++|++|++++|.
T Consensus 184 ~~L~~L~l~~~~ 195 (594)
T 2p1m_B 184 TSLVSLNISCLA 195 (594)
T ss_dssp CCCCEEECTTCC
T ss_pred CcCcEEEecccC
Confidence 455555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=5.7e-14 Score=122.88 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=114.9
Q ss_pred CCccEEEccCCCCceeccCccc-cCCCCCCEEEcccCCCCCCCCCCC-----CCCCCCCEEEccCCcCCC----CCcccc
Q 036300 91 NSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP-----SKLVNLRRLALAGNQING----QIPASI 160 (269)
Q Consensus 91 ~~L~~L~l~~n~~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~----~~p~~l 160 (269)
+.|++|+|++| .+.+.....+ ..+++|++|+|++|.++......+ ...++|++|+|++|.++. .++..+
T Consensus 101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 58999999999 6765433333 346789999999999975333333 346789999999999874 244556
Q ss_pred CCCCCCCEEEccCCcCCchh----hhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCcchhhh
Q 036300 161 GGLTKLLIFDLSRNNLSGSM----LLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGGLVGSI 232 (269)
Q Consensus 161 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 232 (269)
..+++|++|++++|.+++.. +..+...++|+.|++++|.+++. ++..+...++|++|+|++|.|++.....+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 78899999999999997543 55677788999999999999863 33445567899999999999987666666
Q ss_pred hcCCC-----CCeEE--ccCCCC
Q 036300 233 EEMVS-----LKEMV--VSNNPI 248 (269)
Q Consensus 233 ~~l~~-----L~~L~--l~~N~l 248 (269)
..+.. |+.+. +..|.+
T Consensus 260 ~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 260 RDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHCC------CEEECCCC----C
T ss_pred HHHhcCCCccchhhHhhhcCCcc
Confidence 55432 55555 555555
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.7e-10 Score=100.27 Aligned_cols=135 Identities=14% Similarity=0.135 Sum_probs=58.6
Q ss_pred cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccC--CCCCCCEEEccC--CcCCc-----hhh
Q 036300 111 SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG--GLTKLLIFDLSR--NNLSG-----SML 181 (269)
Q Consensus 111 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~l~~--n~l~~-----~~~ 181 (269)
.+..+|+|+.|++++|.-. .++. + .+++|+.|++..+.++......+. .+++|++|+|+. |...+ .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3345556666666555211 1222 2 245556666555554422222222 455555555532 11100 001
Q ss_pred hhh--cCcccCCEEeCcCCcCCCcCchhhc---CCCCCCEEEccCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300 182 LTL--GKLARLLKLDLSYNNLQEKIPKEIG---NLHNVTFLDLRSNNFLGG----LVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 182 ~~~--~~l~~L~~L~ls~n~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l 248 (269)
..+ ..+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 111 1345555555555555432222222 344555555555555442 222223445555555555555
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=1e-09 Score=95.45 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=107.8
Q ss_pred cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCC--CCCCCCCEEEccC--CcCCCC-----Ccccc
Q 036300 90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP--SKLVNLRRLALAG--NQINGQ-----IPASI 160 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~--n~l~~~-----~p~~l 160 (269)
+++|+.|++++| .-. .++. +. +++|++|+|..+.++......+ ..+++|+.|+|+. +...+. +...+
T Consensus 171 ~P~L~~L~L~g~-~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 171 MPLLNNLKIKGT-NNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp CTTCCEEEEECC-BTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCCcEEEEeCC-CCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 489999999988 211 2343 43 8999999999988764332233 3789999999863 221111 11223
Q ss_pred --CCCCCCCEEEccCCcCCchhhhhhc---CcccCCEEeCcCCcCCCcC----chhhcCCCCCCEEEccCCccCCcchhh
Q 036300 161 --GGLTKLLIFDLSRNNLSGSMLLTLG---KLARLLKLDLSYNNLQEKI----PKEIGNLHNVTFLDLRSNNFLGGLVGS 231 (269)
Q Consensus 161 --~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~~~~ 231 (269)
..+++|++|++.+|.+.+..+..+. .+++|++|+++.|.+.+.. +..+..+++|+.|++++|.++...-..
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 3579999999999999765544443 5789999999999988643 333456789999999999998765556
Q ss_pred hhc-CCCCCeEEccCCC
Q 036300 232 IEE-MVSLKEMVVSNNP 247 (269)
Q Consensus 232 ~~~-l~~L~~L~l~~N~ 247 (269)
+.. + ...++++.++
T Consensus 327 l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC--CSEEECCSBC
T ss_pred HHHHc--CCEEEecCCc
Confidence 664 3 4678998887
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.88 E-value=1.3e-09 Score=85.81 Aligned_cols=120 Identities=10% Similarity=0.096 Sum_probs=57.5
Q ss_pred CccccCCCCCCEEEcccC-CCCCC----CCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhh
Q 036300 109 PTSIDYLKNLQSLVLLEK-GLTGK----LPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLT 183 (269)
Q Consensus 109 p~~l~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 183 (269)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+...-.. .+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~--------------------~l~~~ 88 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF--------------------ALAEM 88 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH--------------------HHHHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH--------------------HHHHH
Confidence 344555666777777766 65521 122233344455555555544421000 11222
Q ss_pred hcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEc--cCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300 184 LGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDL--RSNNFLGG----LVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 184 ~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l 248 (269)
+...+.|++|++++|.+.+. +...+...++|++|+| ++|.+... +.+.+...++|++|++++|.+
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33334555555555555432 2233444455666666 55655542 233444456666666666665
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.79 E-value=1.2e-09 Score=85.96 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=56.8
Q ss_pred cCCccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCCCC----CCCCCCCCCCCCEEEccCCcCCCC----Cc
Q 036300 90 ANSLDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLTGK----LPIEPSKLVNLRRLALAGNQINGQ----IP 157 (269)
Q Consensus 90 ~~~L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p 157 (269)
.+.|++|+|++|+.+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 478999999998334432 445677789999999999998742 222334456677777777766632 23
Q ss_pred cccCCCCCCCEEEc--cCCcCCc
Q 036300 158 ASIGGLTKLLIFDL--SRNNLSG 178 (269)
Q Consensus 158 ~~l~~l~~L~~L~l--~~n~l~~ 178 (269)
..+...++|++|++ ++|.+..
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHhCCCceEEEecCCCCCCCH
Confidence 34444455555555 5555543
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.76 E-value=1.6e-09 Score=89.93 Aligned_cols=63 Identities=29% Similarity=0.372 Sum_probs=28.8
Q ss_pred CCCCCCEEEccCCcCCc--hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCC--CCCEEEccCCccCC
Q 036300 162 GLTKLLIFDLSRNNLSG--SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLH--NVTFLDLRSNNFLG 226 (269)
Q Consensus 162 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~ 226 (269)
++++|++|++++|++++ .++..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 34455555555555544 2233344455555555555555432 1122222 45555555555443
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=1.5e-07 Score=82.46 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=53.1
Q ss_pred cCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCC
Q 036300 160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLK 239 (269)
Q Consensus 160 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 239 (269)
|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.++.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 445555555555433 33233445566666666666533 44333455666666666666544 4434445666666666
Q ss_pred eEEccCCCCCCCCCCccccccCcCCcee
Q 036300 240 EMVVSNNPIFGGGLNGIRWENLQNLEIW 267 (269)
Q Consensus 240 ~L~l~~N~l~~~~~p~~~~~~l~~L~~L 267 (269)
.+++..+ + ..+. ..|.++++|+.+
T Consensus 370 ~i~lp~~-~--~~~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 370 KVELPKR-L--EQYR-YDFEDTTKFKWI 393 (394)
T ss_dssp EEEEEGG-G--GGGG-GGBCTTCEEEEE
T ss_pred EEEECCC-C--EEhh-heecCCCCCcEE
Confidence 6666544 2 1222 245566665543
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=1.1e-07 Score=78.81 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=39.5
Q ss_pred CcccCCEEeCcCCcCCC--cCchhhcCCCCCCEEEccCCccCCcchhhhhcCC--CCCeEEccCCCCCCCCCCc------
Q 036300 186 KLARLLKLDLSYNNLQE--KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMV--SLKEMVVSNNPIFGGGLNG------ 255 (269)
Q Consensus 186 ~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~p~------ 255 (269)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|++|++++|++ .+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl-~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL-CDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTT-GGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcC-ccccCcchhHHH
Confidence 44555666666665554 2234444555566666666655543 1222222 555566666655 333331
Q ss_pred cccccCcCCceec
Q 036300 256 IRWENLQNLEIWI 268 (269)
Q Consensus 256 ~~~~~l~~L~~L~ 268 (269)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1344555555554
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=2.9e-06 Score=74.32 Aligned_cols=191 Identities=12% Similarity=0.009 Sum_probs=141.2
Q ss_pred ccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCC
Q 036300 64 VCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLR 143 (269)
Q Consensus 64 ~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 143 (269)
.|.++..+...- .+..|+...|.+. ..|+.+.+..+. ..+.........|+.+.+.... +......+.++..|+
T Consensus 183 ~c~~L~~i~l~~-~~~~I~~~~F~~~-~~L~~i~~~~~~---~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 183 GCGKLKSIKLPR-NLKIIRDYCFAEC-ILLENMEFPNSL---YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLE 256 (394)
T ss_dssp TCTTCCBCCCCT-TCCEECTTTTTTC-TTCCBCCCCTTC---CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCC
T ss_pred CCCCceEEEcCC-CceEeCchhhccc-cccceeecCCCc---eEeehhhcccCCCceEEECCCc-eecccccccccccce
Confidence 567776654432 2567777777764 889999887772 2233344456789999887553 324456788999999
Q ss_pred EEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCc
Q 036300 144 RLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN 223 (269)
Q Consensus 144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 223 (269)
.+.+..+... .....|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+
T Consensus 257 ~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 257 SISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp EEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred eEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-
Confidence 9999887554 45567888999999888765443 346778899999999765 55455677889999999999654
Q ss_pred cCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300 224 FLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF 269 (269)
Q Consensus 224 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l 269 (269)
++..-..+|.++.+|+.+++..+ + ..+....|.+|++|+.+++
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-L--RKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-C--CEECTTTBTTCTTCCEEEE
T ss_pred ccEEhHHhccCCCCCCEEEECcc-c--cEehHHHhhCCCCCCEEEE
Confidence 66555678999999999999877 6 5677778999999998764
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.43 E-value=5.9e-06 Score=72.29 Aligned_cols=103 Identities=10% Similarity=0.082 Sum_probs=49.9
Q ss_pred cCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCC
Q 036300 160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLK 239 (269)
Q Consensus 160 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 239 (269)
|..+..|+.+.+..+..+ .....|.+++.|+.+.+. +.++......|.++.+|+.+.+..+ ++..-..+|.++.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 445555555555443221 223344555555555553 2233333344555556666655433 3333344555556666
Q ss_pred eEEccCCCCCCCCCCccccccCcCCceec
Q 036300 240 EMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 240 ~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
.+.+..+ + ..+....|.+|++|+.++
T Consensus 338 ~i~ip~s-v--~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 338 RIAIPSS-V--TKIPESAFSNCTALNNIE 363 (394)
T ss_dssp EEEECTT-C--CBCCGGGGTTCTTCCEEE
T ss_pred EEEECcc-c--CEEhHhHhhCCCCCCEEE
Confidence 6655433 3 344444555555555543
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=3.2e-07 Score=71.03 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=48.9
Q ss_pred CCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCc-CCchhhhhhcCc----ccCCEEeCcCCc-CCCcCchhhcCCCC
Q 036300 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN-LSGSMLLTLGKL----ARLLKLDLSYNN-LQEKIPKEIGNLHN 213 (269)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~p~~~~~l~~ 213 (269)
.+|+.||++++.++..--..+..+++|++|++++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666654433445666667777777664 554444445443 356777776663 55433344556666
Q ss_pred CCEEEccCCc
Q 036300 214 VTFLDLRSNN 223 (269)
Q Consensus 214 L~~L~L~~N~ 223 (269)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776664
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=2.5e-07 Score=71.65 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=73.7
Q ss_pred CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCc-CCCcCchhhcCC----CCCCEEEccCCc-cCCcch
Q 036300 156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN-LQEKIPKEIGNL----HNVTFLDLRSNN-FLGGLV 229 (269)
Q Consensus 156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~~ 229 (269)
+|.....-..|++|+++++.++...-..+..+++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +|+.--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433333479999999999987767778899999999999995 776444556654 479999999985 887666
Q ss_pred hhhhcCCCCCeEEccCCCC
Q 036300 230 GSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 230 ~~~~~l~~L~~L~l~~N~l 248 (269)
..+..+++|++|++++++-
T Consensus 133 ~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHGGGCTTCCEEEEESCTT
T ss_pred HHHhcCCCCCEEECCCCCC
Confidence 7788999999999999974
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.37 E-value=6.3e-06 Score=72.14 Aligned_cols=126 Identities=7% Similarity=0.020 Sum_probs=91.8
Q ss_pred CCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCC
Q 036300 134 IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHN 213 (269)
Q Consensus 134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 213 (269)
.+|.++.+|+.+.+.++..+ .-...|.++++|+.+.+. +.++......|.++.+|+.+.+..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 45677888999988766543 445678889999999996 4555455668889999999999765 55555678899999
Q ss_pred CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300 214 VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI 268 (269)
Q Consensus 214 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~ 268 (269)
|+.+.+..+ ++..-..+|.++.+|+.+++.++.. . . ..+..+.+|+.+.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~-~--~--~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS-Q--W--NAISTDSGLQNLP 384 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH-H--H--HTCBCCCCC----
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee-e--h--hhhhccCCCCEEE
Confidence 999999654 6656677899999999999998764 1 1 2445566666654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.33 E-value=1.8e-05 Score=68.65 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=47.8
Q ss_pred ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCC
Q 036300 159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSL 238 (269)
Q Consensus 159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 238 (269)
.+..+..|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|.++++|+.+.+.++.++.....+|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444455555555433 22222334444455555554332 222222344555555555555555543334455555555
Q ss_pred CeEEccCCCCCCCCCCccccccCcCCcee
Q 036300 239 KEMVVSNNPIFGGGLNGIRWENLQNLEIW 267 (269)
Q Consensus 239 ~~L~l~~N~l~~~~~p~~~~~~l~~L~~L 267 (269)
+.+.+..+ + ..+....|.+|++|+.+
T Consensus 313 ~~i~lp~~-l--~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 313 SSVTLPTA-L--KTIQVYAFKNCKALSTI 338 (379)
T ss_dssp CEEECCTT-C--CEECTTTTTTCTTCCCC
T ss_pred CEEEcCcc-c--cEEHHHHhhCCCCCCEE
Confidence 55555432 3 33444445555555544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.27 E-value=1.4e-05 Score=69.48 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=100.1
Q ss_pred cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300 111 SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL 190 (269)
Q Consensus 111 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 190 (269)
.+....+|+.+.+..+ +......++.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445566666666544 33244556778888888888765 44233456778888888888654 443445678888899
Q ss_pred CEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCC
Q 036300 191 LKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNL 264 (269)
Q Consensus 191 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L 264 (269)
+.+.+..+.++......|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+ + ..+....|.+++.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v--~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-I--TLIESGAFEGSSIT 358 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-C--CEECTTTTTTSSCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-c--CEEchhHhhCCCCC
Confidence 99999888887666677888899999998654 55455668888888888888654 4 34444455555433
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.81 E-value=2.3e-05 Score=61.71 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=21.3
Q ss_pred ccCCCCCCEEEcccC-CCCCC----CCCCCCCCCCCCEEEccCCcCC
Q 036300 112 IDYLKNLQSLVLLEK-GLTGK----LPIEPSKLVNLRRLALAGNQIN 153 (269)
Q Consensus 112 l~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 153 (269)
+..-+.|++|+|++| .+... +-..+..-+.|+.|+|++|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 344466777777764 55421 1222334445555555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.29 E-value=0.00047 Score=54.20 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=83.0
Q ss_pred CCCCCCCEEEccCC-cCCCC----CccccCCCCCCCEEEccCCcCCchhh----hhhcCcccCCEEeCcCCcCCCc----
Q 036300 137 SKLVNLRRLALAGN-QINGQ----IPASIGGLTKLLIFDLSRNNLSGSML----LTLGKLARLLKLDLSYNNLQEK---- 203 (269)
Q Consensus 137 ~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~ls~n~l~~~---- 203 (269)
.+-+.|++|+|++| .+... +-+.+..-+.|+.|+|++|.+..... ..+..-+.|+.|+|+.|.+.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45678999999986 77632 34556667889999999999985443 3444557899999999999853
Q ss_pred CchhhcCCCCCCEEEccCC---ccCC----cchhhhhcCCCCCeEEccCCCC
Q 036300 204 IPKEIGNLHNVTFLDLRSN---NFLG----GLVGSIEEMVSLKEMVVSNNPI 248 (269)
Q Consensus 204 ~p~~~~~l~~L~~L~L~~N---~l~~----~~~~~~~~l~~L~~L~l~~N~l 248 (269)
+.+.+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3345566678999999865 3332 2455677778999999998876
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.23 E-value=0.00066 Score=49.69 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=40.0
Q ss_pred CEEEccCCcCC-chhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccC
Q 036300 167 LIFDLSRNNLS-GSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFL 225 (269)
Q Consensus 167 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 225 (269)
..++.+++.++ ..+|..+ .++|+.|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777775 2455433 246888888888888655566777888888888888765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.96 E-value=0.0016 Score=47.57 Aligned_cols=33 Identities=33% Similarity=0.277 Sum_probs=12.8
Q ss_pred CCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC
Q 036300 118 LQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150 (269)
Q Consensus 118 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (269)
|++|+|++|.|+...+..|..+++|++|+|.+|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 444444444444222223333334444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.75 E-value=11 Score=25.47 Aligned_cols=15 Identities=7% Similarity=-0.009 Sum_probs=6.4
Q ss_pred CCCCCCCCCEEEccC
Q 036300 135 EPSKLVNLRRLALAG 149 (269)
Q Consensus 135 ~~~~l~~L~~L~L~~ 149 (269)
+|.++.+|+.+.+-.
T Consensus 15 aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 15 LFAGNTVIREITVQP 29 (100)
T ss_dssp TTTTCTTCCCEEECT
T ss_pred HhcCCCCCcEEEcCC
Confidence 344444444444433
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.21 E-value=30 Score=23.20 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=24.3
Q ss_pred CccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC
Q 036300 109 PTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150 (269)
Q Consensus 109 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (269)
..+|..+.+|+.+.+-.+ ++..-..+|.++.+|+.+.+...
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 345666667777666654 33244456666666766666543
Done!