BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036303
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAES---------- 175
+D C +GDV++AL L+DE G++ + Y +L++ +C+ + S
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFD 91
Query: 176 MFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLC 235
+F+ M VVPN T+ D A + +M +QP + ++G + G C
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151
Query: 236 KVGELRAAGNFFVHM 250
+ G+ A HM
Sbjct: 152 RKGDADKAYEVDAHM 166
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 266 IDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQ----------LEGAEG 315
+D K G++ EA+ L E + + + YN+L+ +C + + L
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFD 91
Query: 316 LLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQC 375
+ ++M + ++ N T+ + + D E A + QM G++P + ++ + G C
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151
Query: 376 KAGNIDAAMGLYTEM 390
+ G+ D A + M
Sbjct: 152 RKGDADKAYEVDAHM 166
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 26/160 (16%)
Query: 196 MDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGV 255
+D K DV AL Y E + +Q + + VL+ +C + E +
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESS---------- 81
Query: 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEG 315
PN G + ++F+ M + ++ P+ T+ + E A
Sbjct: 82 -PN--------PGLSRGFDIFKQMIVD------KVVPNEATFTNGARLAVAKDDPEMAFD 126
Query: 316 LLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQM 355
++++M GI + +Y + G+C++GD +KA V + M
Sbjct: 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 11/134 (8%)
Query: 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAES---------- 175
+D C +GDV++AL L+DE G++ + Y +L++ +C+ + S
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFD 91
Query: 176 MFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLC 235
+F+ VVPN T+ D A + + +QP + ++G + G C
Sbjct: 92 IFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFC 151
Query: 236 KVGELRAAGNFFVH 249
+ G+ A H
Sbjct: 152 RKGDADKAYEVDAH 165
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 266 IDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQ----------LEGAEG 315
+D K G++ EA+ L E + + + YN+L+ +C + + L
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFD 91
Query: 316 LLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQC 375
+ ++ + ++ N T+ + + D E A Q G++P + ++ + G C
Sbjct: 92 IFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFC 151
Query: 376 KAGNIDAA 383
+ G+ D A
Sbjct: 152 RKGDADKA 159
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%)
Query: 187 PNLYTYNALMDGYCKVAD-VNRALEFYHEMLHHNLQPNVVTFGVLMDGL-CKVGELRAAG 244
PN Y ++GY ++ VNR +EF + + NL P G+ + + + G +
Sbjct: 173 PNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPK 232
Query: 245 NFFVHMAKFGVFPNIFVYNCLID-GHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKG 303
NFF + K I + + + G + G LF +E F PDV T L K
Sbjct: 233 NFFAELQKLAKKYGILLVDDEVQMGLGRTGKLF-------AIENFNTVPDVIT---LAKA 282
Query: 304 LCGVGQLEGAEGLLQKM-YKEGILANVVTYNSL 335
L G GA + + +K G+ +N N+L
Sbjct: 283 LGGGIMPIGATIFRKDLDFKPGMHSNTFGGNAL 315
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 64 EMGHIEEALWVYRK-IEVLPAIQACNA-LLNGLIKKGKFDSVWEFYEEMV-LCGLVADVV 120
E G+IEEA+ +YRK +EV P A ++ L + L ++GK Y+E + + AD
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA- 79
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMI 146
Y + + DV AL + I
Sbjct: 80 -YSNMGNTLKEMQDVQGALQCYTRAI 104
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 64 EMGHIEEALWVYRK-IEVLPAIQACNA-LLNGLIKKGKFDSVWEFYEEMV 111
E G+IEEA+ +YRK +EV P A ++ L + L ++GK Y+E +
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,555,371
Number of Sequences: 62578
Number of extensions: 713387
Number of successful extensions: 1554
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1534
Number of HSP's gapped (non-prelim): 18
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)