Query 036303
Match_columns 605
No_of_seqs 672 out of 3594
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 11:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-67 4.4E-72 556.4 59.7 544 2-569 58-651 (857)
2 PLN03218 maturation of RBCL 1; 100.0 5.2E-66 1.1E-70 533.6 67.6 519 49-577 367-914 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 8.8E-66 1.9E-70 531.8 66.7 520 17-544 372-916 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 3.8E-66 8.1E-71 546.8 63.4 554 2-579 159-727 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.1E-61 4.6E-66 498.4 53.4 478 82-579 85-564 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1E-59 2.2E-64 486.0 52.2 469 52-541 87-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.3E-36 1.8E-40 324.9 69.3 562 4-588 304-882 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-35 3.2E-40 322.9 69.1 553 5-579 271-839 (899)
9 PRK11447 cellulose synthase su 100.0 2.7E-27 5.9E-32 257.0 68.7 541 14-571 27-739 (1157)
10 PRK11447 cellulose synthase su 100.0 6.3E-26 1.4E-30 246.5 65.8 514 53-578 29-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.4E-24 3.1E-29 224.8 62.3 516 34-581 62-715 (987)
12 KOG4626 O-linked N-acetylgluco 100.0 1.6E-26 3.5E-31 212.1 35.4 453 87-561 51-508 (966)
13 KOG4626 O-linked N-acetylgluco 100.0 3.6E-25 7.8E-30 203.3 40.7 443 55-517 51-499 (966)
14 KOG2002 TPR-containing nuclear 100.0 1E-23 2.2E-28 204.1 49.6 544 2-579 171-752 (1018)
15 PRK09782 bacteriophage N4 rece 100.0 2.3E-22 5E-27 208.5 61.8 548 1-577 84-745 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-21 3.1E-26 199.7 51.7 256 308-575 308-574 (615)
17 TIGR00990 3a0801s09 mitochondr 99.9 8.8E-21 1.9E-25 193.9 54.1 433 87-537 130-571 (615)
18 KOG2002 TPR-containing nuclear 99.9 3.2E-20 6.8E-25 180.2 47.8 408 153-572 269-709 (1018)
19 PRK15174 Vi polysaccharide exp 99.9 1.3E-20 2.8E-25 191.6 42.8 329 194-536 47-380 (656)
20 PRK11788 tetratricopeptide rep 99.9 2.3E-21 4.9E-26 188.6 34.4 297 235-542 46-352 (389)
21 PRK10049 pgaA outer membrane p 99.9 1E-19 2.2E-24 189.3 48.6 420 118-579 14-463 (765)
22 PRK15174 Vi polysaccharide exp 99.9 1.9E-19 4.2E-24 183.1 47.5 380 61-463 14-403 (656)
23 PRK10049 pgaA outer membrane p 99.9 4.9E-19 1.1E-23 184.3 50.3 430 82-553 13-470 (765)
24 PRK11788 tetratricopeptide rep 99.9 2.5E-20 5.4E-25 181.3 37.3 304 265-579 41-354 (389)
25 PRK14574 hmsH outer membrane p 99.9 9.4E-18 2E-22 170.9 54.2 455 48-536 30-512 (822)
26 PRK14574 hmsH outer membrane p 99.9 2.4E-17 5.2E-22 168.0 55.3 463 12-513 32-522 (822)
27 KOG2076 RNA polymerase III tra 99.9 2.4E-17 5.3E-22 159.4 51.1 538 34-579 157-776 (895)
28 KOG0495 HAT repeat protein [RN 99.9 3.9E-16 8.5E-21 145.4 51.9 457 99-579 391-853 (913)
29 KOG1915 Cell cycle control pro 99.9 1.5E-15 3.3E-20 136.2 49.2 469 51-536 72-584 (677)
30 KOG2003 TPR repeat-containing 99.9 5.1E-18 1.1E-22 151.0 33.2 477 54-558 203-709 (840)
31 KOG1915 Cell cycle control pro 99.9 1.1E-15 2.3E-20 137.2 47.4 479 81-578 70-591 (677)
32 KOG0495 HAT repeat protein [RN 99.9 4.6E-15 9.9E-20 138.4 51.7 482 91-597 413-901 (913)
33 KOG2076 RNA polymerase III tra 99.8 8E-15 1.7E-19 142.2 52.1 527 50-580 135-742 (895)
34 KOG2003 TPR repeat-containing 99.8 7.9E-17 1.7E-21 143.6 32.2 460 35-522 220-708 (840)
35 KOG4422 Uncharacterized conser 99.8 1.9E-14 4.1E-19 127.7 41.2 422 95-538 126-591 (625)
36 KOG4422 Uncharacterized conser 99.8 1.1E-13 2.5E-18 122.8 42.5 428 51-503 115-591 (625)
37 PRK10747 putative protoheme IX 99.8 8.9E-15 1.9E-19 140.5 35.6 286 272-575 97-393 (398)
38 KOG1155 Anaphase-promoting com 99.7 7.5E-13 1.6E-17 119.0 42.5 330 151-501 161-494 (559)
39 KOG0547 Translocase of outer m 99.7 3.8E-14 8.3E-19 128.0 34.3 220 340-572 337-566 (606)
40 TIGR00540 hemY_coli hemY prote 99.7 2.7E-14 5.8E-19 138.1 34.2 291 270-572 95-399 (409)
41 KOG1173 Anaphase-promoting com 99.7 1.3E-13 2.8E-18 127.0 36.3 268 299-576 249-522 (611)
42 PF13429 TPR_15: Tetratricopep 99.7 3.3E-17 7.1E-22 150.5 12.8 261 299-571 13-276 (280)
43 KOG2047 mRNA splicing factor [ 99.7 1.9E-11 4.1E-16 114.6 49.1 507 51-575 101-690 (835)
44 KOG1155 Anaphase-promoting com 99.7 1.8E-12 3.9E-17 116.6 40.6 380 188-593 163-552 (559)
45 KOG3785 Uncharacterized conser 99.7 9.2E-13 2E-17 114.3 35.2 223 345-584 270-502 (557)
46 KOG0547 Translocase of outer m 99.7 2.1E-13 4.6E-18 123.2 32.6 421 87-536 118-565 (606)
47 KOG1126 DNA-binding cell divis 99.7 7E-15 1.5E-19 138.2 23.6 288 273-578 333-626 (638)
48 KOG1173 Anaphase-promoting com 99.7 1E-12 2.2E-17 121.2 36.9 449 49-516 46-530 (611)
49 TIGR00540 hemY_coli hemY prote 99.7 2.7E-13 5.8E-18 131.2 35.4 289 236-536 96-398 (409)
50 PRK10747 putative protoheme IX 99.7 3.5E-13 7.7E-18 129.5 35.7 283 237-536 97-389 (398)
51 PF13429 TPR_15: Tetratricopep 99.7 3.6E-16 7.8E-21 143.6 12.0 260 264-535 13-275 (280)
52 COG2956 Predicted N-acetylgluc 99.7 6.2E-13 1.4E-17 113.9 28.8 221 97-323 48-278 (389)
53 KOG1126 DNA-binding cell divis 99.6 9.5E-14 2E-18 130.7 25.1 284 239-538 334-621 (638)
54 COG3071 HemY Uncharacterized e 99.6 2.7E-12 5.8E-17 113.7 32.2 286 202-501 97-389 (400)
55 KOG4162 Predicted calmodulin-b 99.6 5.9E-12 1.3E-16 120.6 36.8 460 95-578 295-789 (799)
56 KOG3785 Uncharacterized conser 99.6 6.3E-11 1.4E-15 103.1 39.1 423 56-514 61-500 (557)
57 COG2956 Predicted N-acetylgluc 99.6 2.4E-12 5.3E-17 110.4 29.1 286 132-427 48-346 (389)
58 COG3071 HemY Uncharacterized e 99.6 1.3E-11 2.8E-16 109.5 34.2 287 272-572 97-390 (400)
59 KOG2047 mRNA splicing factor [ 99.6 2.7E-09 5.8E-14 100.6 50.8 293 261-561 389-712 (835)
60 KOG1174 Anaphase-promoting com 99.6 1.1E-10 2.4E-15 103.7 36.8 274 292-579 230-507 (564)
61 KOG1156 N-terminal acetyltrans 99.6 4.9E-10 1.1E-14 105.7 42.3 241 54-302 10-260 (700)
62 PF12569 NARP1: NMDA receptor- 99.6 1.3E-10 2.7E-15 112.6 38.7 297 54-358 6-334 (517)
63 KOG1156 N-terminal acetyltrans 99.6 1E-09 2.2E-14 103.5 42.1 435 122-573 11-469 (700)
64 KOG1129 TPR repeat-containing 99.5 1.7E-12 3.6E-17 111.4 19.8 239 332-580 226-466 (478)
65 TIGR02521 type_IV_pilW type IV 99.5 9.4E-12 2E-16 112.0 26.4 204 363-574 30-234 (234)
66 KOG1174 Anaphase-promoting com 99.5 2.5E-09 5.5E-14 95.3 39.6 307 220-542 190-503 (564)
67 PF12569 NARP1: NMDA receptor- 99.5 1.5E-09 3.2E-14 105.4 41.2 296 89-393 9-334 (517)
68 KOG4162 Predicted calmodulin-b 99.5 1.1E-09 2.3E-14 105.5 38.7 236 48-285 319-573 (799)
69 COG3063 PilF Tfp pilus assembl 99.5 1.9E-11 4.2E-16 100.1 23.0 206 366-579 37-243 (250)
70 KOG2376 Signal recognition par 99.5 4.3E-09 9.3E-14 98.3 40.1 453 55-532 15-515 (652)
71 KOG2376 Signal recognition par 99.5 5.8E-09 1.3E-13 97.5 40.9 452 87-567 15-515 (652)
72 KOG1129 TPR repeat-containing 99.5 6.2E-12 1.4E-16 108.0 19.9 228 264-501 228-457 (478)
73 KOG4318 Bicoid mRNA stability 99.5 1.1E-10 2.3E-15 113.7 29.3 485 72-592 13-576 (1088)
74 PRK12370 invasion protein regu 99.5 7.2E-11 1.6E-15 118.9 29.6 216 100-322 277-501 (553)
75 PRK12370 invasion protein regu 99.5 5.6E-11 1.2E-15 119.7 27.7 255 309-579 276-542 (553)
76 TIGR02521 type_IV_pilW type IV 99.4 9.2E-11 2E-15 105.5 24.6 196 52-250 31-229 (234)
77 PRK11189 lipoprotein NlpI; Pro 99.4 1.3E-10 2.9E-15 106.8 24.9 226 343-581 40-274 (296)
78 KOG1127 TPR repeat-containing 99.4 3.8E-09 8.3E-14 104.5 34.7 185 346-534 800-993 (1238)
79 KOG1840 Kinesin light chain [C 99.4 2.3E-10 5.1E-15 109.3 25.2 241 331-571 201-478 (508)
80 KOG1840 Kinesin light chain [C 99.4 4.1E-10 8.8E-15 107.7 25.0 237 299-535 204-477 (508)
81 KOG4318 Bicoid mRNA stability 99.4 1.2E-09 2.5E-14 106.7 28.1 274 105-414 11-286 (1088)
82 KOG0548 Molecular co-chaperone 99.3 2.5E-08 5.4E-13 92.5 33.4 424 59-520 9-471 (539)
83 KOG0548 Molecular co-chaperone 99.3 4.9E-08 1.1E-12 90.6 34.8 421 91-555 9-472 (539)
84 KOG1127 TPR repeat-containing 99.3 3.7E-08 8E-13 97.7 35.6 486 59-571 466-995 (1238)
85 KOG3617 WD40 and TPR repeat-co 99.3 2.9E-07 6.3E-12 89.6 40.0 484 51-578 756-1365(1416)
86 COG3063 PilF Tfp pilus assembl 99.3 3.4E-09 7.4E-14 87.2 23.2 197 54-253 37-236 (250)
87 PRK11189 lipoprotein NlpI; Pro 99.3 5.9E-09 1.3E-13 95.9 25.9 196 85-289 65-266 (296)
88 KOG3616 Selective LIM binding 99.3 8.4E-08 1.8E-12 92.1 33.7 274 265-579 738-1031(1636)
89 KOG0624 dsRNA-activated protei 99.3 3.3E-07 7.1E-12 80.1 34.3 309 157-501 41-369 (504)
90 KOG0624 dsRNA-activated protei 99.2 1.2E-07 2.5E-12 82.9 30.1 320 223-579 37-377 (504)
91 cd05804 StaR_like StaR_like; a 99.2 1.2E-07 2.6E-12 91.1 34.1 201 49-252 3-214 (355)
92 KOG4340 Uncharacterized conser 99.2 5.3E-08 1.2E-12 83.2 26.8 428 121-579 12-450 (459)
93 KOG4340 Uncharacterized conser 99.2 5.5E-08 1.2E-12 83.2 26.4 287 55-353 13-334 (459)
94 cd05804 StaR_like StaR_like; a 99.2 2.2E-07 4.8E-12 89.3 34.5 263 304-573 53-337 (355)
95 KOG0985 Vesicle coat protein c 99.2 7.7E-06 1.7E-10 82.0 44.6 203 330-571 1105-1307(1666)
96 KOG0985 Vesicle coat protein c 99.2 8.8E-06 1.9E-10 81.5 45.8 130 50-179 604-749 (1666)
97 KOG3616 Selective LIM binding 99.2 1.4E-06 2.9E-11 84.1 36.3 308 194-565 620-930 (1636)
98 KOG1125 TPR repeat-containing 99.2 1.1E-08 2.4E-13 95.7 21.8 250 302-565 293-564 (579)
99 PF13041 PPR_2: PPR repeat fam 99.1 1.4E-10 3E-15 73.9 5.9 49 152-200 1-49 (50)
100 PRK04841 transcriptional regul 99.1 7.3E-07 1.6E-11 97.3 37.8 345 234-578 384-766 (903)
101 KOG1125 TPR repeat-containing 99.1 7E-09 1.5E-13 96.9 18.3 232 336-577 292-532 (579)
102 KOG3617 WD40 and TPR repeat-co 99.1 1.8E-05 4E-10 77.7 42.2 171 58-252 806-995 (1416)
103 PRK04841 transcriptional regul 99.1 1.2E-06 2.6E-11 95.6 37.6 60 477-536 695-759 (903)
104 PF13041 PPR_2: PPR repeat fam 99.1 5.5E-10 1.2E-14 71.1 6.4 49 117-165 1-49 (50)
105 KOG1914 mRNA cleavage and poly 99.1 1.5E-05 3.3E-10 74.5 40.2 134 47-183 15-166 (656)
106 PLN02789 farnesyltranstransfer 99.0 5.5E-07 1.2E-11 82.7 26.7 225 339-574 47-304 (320)
107 PF04733 Coatomer_E: Coatomer 99.0 3.7E-08 7.9E-13 89.2 18.2 148 339-501 112-264 (290)
108 PRK10370 formate-dependent nit 99.0 6.5E-08 1.4E-12 82.6 18.8 152 407-579 24-180 (198)
109 PF04733 Coatomer_E: Coatomer 99.0 1.7E-08 3.8E-13 91.2 16.1 249 267-536 9-264 (290)
110 KOG1914 mRNA cleavage and poly 99.0 2.8E-05 6.1E-10 72.8 44.4 456 79-567 15-534 (656)
111 TIGR03302 OM_YfiO outer membra 99.0 8.5E-08 1.8E-12 85.9 19.9 62 513-574 171-234 (235)
112 KOG1128 Uncharacterized conser 99.0 6.3E-08 1.4E-12 93.2 18.4 222 330-577 399-621 (777)
113 KOG1128 Uncharacterized conser 98.9 7E-07 1.5E-11 86.2 23.8 216 296-536 400-615 (777)
114 PLN02789 farnesyltranstransfer 98.9 2.6E-06 5.7E-11 78.3 26.1 212 55-271 40-267 (320)
115 PRK15359 type III secretion sy 98.9 6.1E-08 1.3E-12 78.2 13.1 114 455-580 14-129 (144)
116 KOG1070 rRNA processing protei 98.9 2.6E-06 5.5E-11 88.2 27.2 235 328-571 1457-1699(1710)
117 KOG3060 Uncharacterized conser 98.9 1.6E-06 3.4E-11 72.9 20.8 186 342-536 25-219 (289)
118 KOG1070 rRNA processing protei 98.8 4.8E-06 1E-10 86.3 27.5 232 291-530 1455-1693(1710)
119 TIGR03302 OM_YfiO outer membra 98.8 6.6E-07 1.4E-11 80.1 19.2 187 48-253 29-232 (235)
120 PRK15179 Vi polysaccharide bio 98.8 1E-06 2.3E-11 89.3 22.1 189 4-195 37-228 (694)
121 COG5010 TadD Flp pilus assembl 98.8 2.4E-06 5.3E-11 72.5 19.9 155 368-530 70-224 (257)
122 PRK10370 formate-dependent nit 98.7 2E-06 4.4E-11 73.5 18.7 156 58-226 22-180 (198)
123 COG5010 TadD Flp pilus assembl 98.7 2.6E-06 5.7E-11 72.2 18.8 159 88-250 70-228 (257)
124 PRK15179 Vi polysaccharide bio 98.7 2.1E-06 4.6E-11 87.2 21.7 134 431-572 83-217 (694)
125 PRK15359 type III secretion sy 98.7 9.2E-07 2E-11 71.4 15.4 90 440-536 30-120 (144)
126 KOG2053 Mitochondrial inherita 98.7 0.00048 1E-08 69.0 46.2 222 63-289 20-256 (932)
127 COG4783 Putative Zn-dependent 98.7 4.4E-05 9.5E-10 70.9 27.2 119 130-251 317-435 (484)
128 KOG3081 Vesicle coat complex C 98.7 3.1E-05 6.6E-10 65.9 23.9 147 300-457 114-264 (299)
129 PRK14720 transcript cleavage f 98.7 1.1E-05 2.3E-10 82.9 25.5 227 41-305 20-268 (906)
130 TIGR02552 LcrH_SycD type III s 98.7 6.3E-07 1.4E-11 72.2 13.2 105 472-578 16-120 (135)
131 PRK14720 transcript cleavage f 98.7 4.4E-06 9.5E-11 85.7 21.1 218 292-554 29-268 (906)
132 KOG3060 Uncharacterized conser 98.6 6.2E-05 1.3E-09 63.6 23.0 191 306-506 24-222 (289)
133 KOG3081 Vesicle coat complex C 98.6 4.1E-05 8.8E-10 65.2 21.5 106 410-524 148-257 (299)
134 TIGR02552 LcrH_SycD type III s 98.5 4.7E-06 1E-10 67.1 14.7 92 439-536 22-113 (135)
135 COG4783 Putative Zn-dependent 98.5 5.4E-05 1.2E-09 70.3 22.1 148 406-579 313-461 (484)
136 PF09976 TPR_21: Tetratricopep 98.5 7.7E-06 1.7E-10 66.4 15.1 120 446-569 23-144 (145)
137 PF12854 PPR_1: PPR repeat 98.4 4.6E-07 9.9E-12 51.5 4.1 29 151-179 4-32 (34)
138 PF12854 PPR_1: PPR repeat 98.4 4.3E-07 9.4E-12 51.6 3.8 34 113-146 1-34 (34)
139 KOG2053 Mitochondrial inherita 98.4 0.0034 7.3E-08 63.2 49.8 191 61-254 52-256 (932)
140 KOG0553 TPR repeat-containing 98.4 3.3E-06 7.2E-11 73.2 10.7 94 481-578 89-184 (304)
141 KOG0550 Molecular chaperone (D 98.4 3.5E-05 7.7E-10 69.7 17.2 88 484-573 260-351 (486)
142 TIGR02795 tol_pal_ybgF tol-pal 98.4 7.8E-06 1.7E-10 64.1 12.1 102 475-578 4-111 (119)
143 PRK15363 pathogenicity island 98.4 9E-06 1.9E-10 64.3 11.7 98 474-574 36-134 (157)
144 KOG2041 WD40 repeat protein [G 98.3 0.002 4.2E-08 62.8 28.4 203 48-285 688-904 (1189)
145 COG4235 Cytochrome c biogenesi 98.3 3.6E-05 7.8E-10 67.4 15.1 118 470-590 153-274 (287)
146 COG3898 Uncharacterized membra 98.3 0.0029 6.3E-08 57.3 29.9 257 305-580 131-399 (531)
147 PF09976 TPR_21: Tetratricopep 98.3 8.1E-05 1.7E-09 60.4 15.7 117 377-499 24-144 (145)
148 PF13414 TPR_11: TPR repeat; P 98.2 5.3E-06 1.2E-10 57.3 7.0 66 507-574 2-69 (69)
149 cd00189 TPR Tetratricopeptide 98.2 2.8E-05 6.1E-10 58.1 11.1 97 476-575 3-100 (100)
150 PLN03088 SGT1, suppressor of 98.2 2.3E-05 5E-10 74.1 12.7 90 440-536 8-98 (356)
151 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.2E-05 1.6E-09 70.4 15.4 122 369-500 174-295 (395)
152 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.3E-05 2E-09 69.6 16.0 127 330-462 170-296 (395)
153 PF13432 TPR_16: Tetratricopep 98.2 6.8E-06 1.5E-10 55.9 6.4 62 514-576 3-64 (65)
154 PF12895 Apc3: Anaphase-promot 98.2 4.4E-06 9.5E-11 60.4 5.5 81 486-569 2-84 (84)
155 PRK10153 DNA-binding transcrip 98.2 0.00017 3.8E-09 71.2 18.2 141 430-578 333-488 (517)
156 PRK15363 pathogenicity island 98.1 5.5E-05 1.2E-09 59.9 11.5 97 51-148 34-132 (157)
157 PRK02603 photosystem I assembl 98.1 9.4E-05 2E-09 62.2 13.6 99 476-576 38-153 (172)
158 PF14938 SNAP: Soluble NSF att 98.1 0.00012 2.7E-09 67.0 15.1 103 476-579 117-232 (282)
159 COG4700 Uncharacterized protei 98.1 0.0015 3.2E-08 52.7 18.4 126 431-564 86-214 (251)
160 KOG0553 TPR repeat-containing 98.1 7.3E-05 1.6E-09 65.1 11.6 102 408-517 90-191 (304)
161 KOG0550 Molecular chaperone (D 98.0 0.0019 4.1E-08 58.9 20.5 164 330-502 169-350 (486)
162 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00018 3.9E-09 56.3 13.0 95 54-148 4-105 (119)
163 PF14938 SNAP: Soluble NSF att 98.0 0.0014 3E-08 60.1 20.5 126 373-499 123-263 (282)
164 KOG1130 Predicted G-alpha GTPa 98.0 6.6E-05 1.4E-09 67.9 10.9 139 436-574 197-346 (639)
165 COG4700 Uncharacterized protei 98.0 0.0037 8E-08 50.4 19.1 134 396-534 86-219 (251)
166 PLN03088 SGT1, suppressor of 98.0 0.00023 4.9E-09 67.4 14.9 102 406-515 9-110 (356)
167 PRK10803 tol-pal system protei 98.0 0.00015 3.2E-09 64.7 12.7 103 474-578 144-252 (263)
168 CHL00033 ycf3 photosystem I as 98.0 0.00029 6.2E-09 59.0 13.6 103 473-577 35-154 (168)
169 PRK10866 outer membrane biogen 98.0 0.0014 3E-08 58.2 18.3 64 51-114 31-99 (243)
170 cd00189 TPR Tetratricopeptide 97.9 0.00017 3.7E-09 53.7 11.2 91 440-536 6-96 (100)
171 PRK02603 photosystem I assembl 97.9 0.00061 1.3E-08 57.3 14.9 91 48-139 31-126 (172)
172 PF12895 Apc3: Anaphase-promot 97.9 5.8E-05 1.3E-09 54.5 6.9 47 413-459 3-50 (84)
173 PF12688 TPR_5: Tetratrico pep 97.9 0.0012 2.6E-08 50.6 14.0 94 405-500 7-102 (120)
174 PF05843 Suf: Suppressor of fo 97.9 0.00043 9.3E-09 63.1 13.7 128 402-536 4-135 (280)
175 PF13525 YfiO: Outer membrane 97.8 0.0012 2.6E-08 57.0 15.6 66 50-115 3-73 (203)
176 PRK10866 outer membrane biogen 97.8 0.0046 9.9E-08 54.9 19.4 178 370-571 38-240 (243)
177 TIGR00756 PPR pentatricopeptid 97.8 3.8E-05 8.3E-10 44.4 4.3 31 157-187 3-33 (35)
178 PRK10153 DNA-binding transcrip 97.8 0.0017 3.7E-08 64.4 18.0 139 396-542 334-485 (517)
179 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.03 6.4E-07 52.1 37.9 146 365-519 398-546 (660)
180 TIGR00756 PPR pentatricopeptid 97.8 4.7E-05 1E-09 44.0 4.4 33 191-223 2-34 (35)
181 PF13371 TPR_9: Tetratricopept 97.8 9.5E-05 2.1E-09 51.7 6.5 61 515-577 2-63 (73)
182 PF05843 Suf: Suppressor of fo 97.8 0.00064 1.4E-08 62.0 13.4 145 365-518 2-150 (280)
183 CHL00033 ycf3 photosystem I as 97.7 0.00067 1.5E-08 56.8 12.2 97 434-534 35-139 (168)
184 PF13812 PPR_3: Pentatricopept 97.7 6.4E-05 1.4E-09 43.0 4.2 29 157-185 4-32 (34)
185 PF07079 DUF1347: Protein of u 97.7 0.043 9.2E-07 51.3 43.7 119 444-569 389-521 (549)
186 PF10037 MRP-S27: Mitochondria 97.7 0.00083 1.8E-08 63.7 13.0 120 188-307 65-186 (429)
187 KOG2796 Uncharacterized conser 97.7 0.012 2.7E-07 50.4 18.3 138 366-510 179-321 (366)
188 PF13432 TPR_16: Tetratricopep 97.7 0.00023 5.1E-09 48.3 7.1 52 482-535 6-58 (65)
189 KOG2041 WD40 repeat protein [G 97.7 0.069 1.5E-06 52.6 27.2 204 116-354 689-903 (1189)
190 PF13812 PPR_3: Pentatricopept 97.7 9.2E-05 2E-09 42.4 4.3 32 475-506 3-34 (34)
191 PF10037 MRP-S27: Mitochondria 97.7 0.00097 2.1E-08 63.2 13.2 122 116-237 63-186 (429)
192 PF08579 RPM2: Mitochondrial r 97.6 0.00059 1.3E-08 50.0 8.8 75 126-200 32-115 (120)
193 PF12688 TPR_5: Tetratrico pep 97.6 0.0042 9E-08 47.7 13.7 92 370-462 7-103 (120)
194 COG4235 Cytochrome c biogenesi 97.6 0.0041 8.9E-08 54.9 15.3 100 431-537 153-256 (287)
195 PF13414 TPR_11: TPR repeat; P 97.6 0.00033 7.2E-09 48.2 7.1 60 475-536 5-66 (69)
196 COG1729 Uncharacterized protei 97.6 0.00068 1.5E-08 58.9 10.2 102 475-579 144-251 (262)
197 PF14559 TPR_19: Tetratricopep 97.6 0.00027 5.9E-09 48.5 6.4 29 473-501 25-53 (68)
198 KOG1130 Predicted G-alpha GTPa 97.6 0.0012 2.6E-08 60.1 11.7 285 127-427 25-343 (639)
199 PF14559 TPR_19: Tetratricopep 97.5 0.00032 7E-09 48.1 6.2 52 96-148 3-54 (68)
200 PF08579 RPM2: Mitochondrial r 97.5 0.0017 3.7E-08 47.7 9.8 79 88-166 29-116 (120)
201 PRK15331 chaperone protein Sic 97.5 0.0017 3.6E-08 52.0 10.0 94 54-148 39-134 (165)
202 PF13281 DUF4071: Domain of un 97.5 0.033 7.1E-07 51.9 19.8 180 367-578 144-340 (374)
203 KOG1258 mRNA processing protei 97.4 0.14 3E-06 50.0 35.0 187 329-522 297-489 (577)
204 PRK10803 tol-pal system protei 97.4 0.0037 8.1E-08 55.9 13.0 89 410-501 154-245 (263)
205 PF07079 DUF1347: Protein of u 97.4 0.12 2.7E-06 48.3 43.0 450 62-548 16-530 (549)
206 PF01535 PPR: PPR repeat; Int 97.4 0.00033 7.2E-09 39.0 3.6 27 191-217 2-28 (31)
207 PF01535 PPR: PPR repeat; Int 97.3 0.0003 6.6E-09 39.1 3.4 29 156-184 2-30 (31)
208 PF13525 YfiO: Outer membrane 97.3 0.027 5.9E-07 48.7 17.0 65 84-148 5-71 (203)
209 KOG2796 Uncharacterized conser 97.3 0.09 1.9E-06 45.4 22.0 133 331-464 179-316 (366)
210 PRK15331 chaperone protein Sic 97.3 0.0034 7.3E-08 50.2 10.0 92 478-571 42-133 (165)
211 PF03704 BTAD: Bacterial trans 97.3 0.012 2.7E-07 47.8 13.6 67 477-545 66-138 (146)
212 KOG0543 FKBP-type peptidyl-pro 97.2 0.01 2.2E-07 54.7 13.6 99 474-575 258-358 (397)
213 COG4105 ComL DNA uptake lipopr 97.2 0.12 2.6E-06 44.9 19.3 82 49-130 31-117 (254)
214 PF13424 TPR_12: Tetratricopep 97.2 0.0017 3.6E-08 46.0 6.9 63 510-572 7-75 (78)
215 KOG1538 Uncharacterized conser 97.2 0.11 2.3E-06 50.9 20.4 46 559-604 891-936 (1081)
216 KOG0543 FKBP-type peptidyl-pro 97.2 0.013 2.9E-07 53.8 13.8 136 4-148 217-355 (397)
217 PF13281 DUF4071: Domain of un 97.2 0.2 4.4E-06 46.8 21.5 176 330-537 142-334 (374)
218 PF06239 ECSIT: Evolutionarily 97.2 0.009 2E-07 50.1 11.3 86 118-203 46-152 (228)
219 PRK11906 transcriptional regul 97.1 0.031 6.8E-07 52.9 16.1 111 449-569 319-433 (458)
220 PF13512 TPR_18: Tetratricopep 97.1 0.023 5E-07 44.5 12.8 121 435-577 11-133 (142)
221 PF06239 ECSIT: Evolutionarily 97.1 0.016 3.4E-07 48.7 12.1 107 472-578 46-177 (228)
222 COG3898 Uncharacterized membra 97.0 0.25 5.5E-06 45.4 32.3 125 87-216 85-215 (531)
223 PF13512 TPR_18: Tetratricopep 97.0 0.021 4.6E-07 44.7 11.5 84 48-131 6-94 (142)
224 PF13371 TPR_9: Tetratricopept 97.0 0.005 1.1E-07 42.9 7.5 53 482-536 4-57 (73)
225 KOG1941 Acetylcholine receptor 97.0 0.029 6.4E-07 50.6 13.6 130 440-569 128-272 (518)
226 PF10300 DUF3808: Protein of u 97.0 0.059 1.3E-06 53.3 17.1 121 447-574 246-378 (468)
227 PF04840 Vps16_C: Vps16, C-ter 96.9 0.34 7.4E-06 44.9 28.0 51 55-114 3-53 (319)
228 PF07719 TPR_2: Tetratricopept 96.9 0.0024 5.2E-08 36.3 4.5 34 543-576 1-34 (34)
229 PF13424 TPR_12: Tetratricopep 96.9 0.0033 7.1E-08 44.5 6.0 65 436-500 7-73 (78)
230 KOG4555 TPR repeat-containing 96.9 0.024 5.2E-07 42.9 10.2 93 481-575 51-147 (175)
231 KOG1941 Acetylcholine receptor 96.9 0.14 3E-06 46.5 16.6 130 405-534 128-272 (518)
232 KOG1258 mRNA processing protei 96.9 0.53 1.2E-05 46.1 34.8 410 52-487 45-489 (577)
233 COG0457 NrfG FOG: TPR repeat [ 96.8 0.33 7.2E-06 43.4 30.0 205 364-575 59-268 (291)
234 COG1729 Uncharacterized protei 96.8 0.037 7.9E-07 48.4 12.6 91 444-536 151-243 (262)
235 PRK11906 transcriptional regul 96.8 0.061 1.3E-06 51.1 14.6 89 488-579 319-408 (458)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0093 2E-07 56.2 9.0 100 470-575 72-177 (453)
237 PF00515 TPR_1: Tetratricopept 96.7 0.003 6.5E-08 35.9 3.8 33 543-575 1-33 (34)
238 COG3118 Thioredoxin domain-con 96.7 0.43 9.3E-06 42.4 18.2 153 407-567 142-296 (304)
239 KOG2114 Vacuolar assembly/sort 96.7 0.95 2.1E-05 46.2 25.6 46 165-211 408-453 (933)
240 PF13428 TPR_14: Tetratricopep 96.6 0.0039 8.5E-08 38.0 4.1 35 544-578 2-36 (44)
241 COG4785 NlpI Lipoprotein NlpI, 96.6 0.36 7.8E-06 40.5 17.0 165 399-577 99-271 (297)
242 KOG1585 Protein required for f 96.6 0.36 7.7E-06 41.4 16.2 54 262-316 193-249 (308)
243 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.041 9E-07 52.1 12.1 66 431-502 72-141 (453)
244 KOG2280 Vacuolar assembly/sort 96.5 1.1 2.3E-05 45.3 28.1 346 183-568 426-795 (829)
245 KOG1586 Protein required for f 96.5 0.31 6.7E-06 41.5 15.2 100 487-586 128-238 (288)
246 COG4105 ComL DNA uptake lipopr 96.4 0.56 1.2E-05 40.9 21.8 65 514-580 173-240 (254)
247 PF03704 BTAD: Bacterial trans 96.4 0.037 8.1E-07 45.0 9.9 58 122-180 65-122 (146)
248 KOG4555 TPR repeat-containing 96.4 0.084 1.8E-06 40.1 10.4 93 442-539 51-146 (175)
249 KOG2114 Vacuolar assembly/sort 96.4 1.4 3E-05 45.1 32.8 225 2-250 290-516 (933)
250 KOG1538 Uncharacterized conser 96.4 1.2 2.5E-05 44.2 20.9 54 225-287 748-801 (1081)
251 KOG4234 TPR repeat-containing 96.4 0.055 1.2E-06 44.5 10.1 95 480-578 102-203 (271)
252 COG3118 Thioredoxin domain-con 96.4 0.52 1.1E-05 41.9 16.6 141 61-204 143-287 (304)
253 PF04184 ST7: ST7 protein; In 96.3 0.7 1.5E-05 44.3 18.3 59 438-499 263-321 (539)
254 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.5 3.2E-05 41.5 37.6 428 70-536 27-530 (660)
255 COG4649 Uncharacterized protei 95.9 0.67 1.4E-05 37.5 13.7 133 51-184 58-197 (221)
256 KOG1585 Protein required for f 95.9 0.26 5.6E-06 42.2 12.1 200 364-567 31-251 (308)
257 PF04053 Coatomer_WDAD: Coatom 95.9 0.28 6E-06 47.9 14.2 154 62-248 271-426 (443)
258 PF13428 TPR_14: Tetratricopep 95.9 0.022 4.8E-07 34.6 4.5 27 87-113 4-30 (44)
259 PF13176 TPR_7: Tetratricopept 95.8 0.015 3.3E-07 33.5 3.5 27 545-571 1-27 (36)
260 KOG2610 Uncharacterized conser 95.8 0.35 7.7E-06 43.5 13.0 156 305-463 114-276 (491)
261 PF13181 TPR_8: Tetratricopept 95.8 0.019 4.1E-07 32.5 3.7 32 544-575 2-33 (34)
262 KOG4234 TPR repeat-containing 95.7 0.32 6.9E-06 40.3 11.6 93 442-536 103-196 (271)
263 PF12921 ATP13: Mitochondrial 95.7 0.29 6.4E-06 38.0 11.2 53 467-519 46-99 (126)
264 COG4785 NlpI Lipoprotein NlpI, 95.7 0.95 2.1E-05 38.2 14.3 29 85-113 100-128 (297)
265 COG2976 Uncharacterized protei 95.7 0.11 2.4E-06 42.8 8.8 90 479-573 95-189 (207)
266 PF04840 Vps16_C: Vps16, C-ter 95.7 1.9 4E-05 40.2 30.1 102 405-530 183-284 (319)
267 COG4649 Uncharacterized protei 95.6 0.83 1.8E-05 37.0 13.2 144 74-218 49-196 (221)
268 KOG2610 Uncharacterized conser 95.6 0.43 9.2E-06 43.0 12.7 157 340-500 114-274 (491)
269 PF13431 TPR_17: Tetratricopep 95.5 0.015 3.2E-07 32.9 2.6 31 531-563 2-33 (34)
270 PF04184 ST7: ST7 protein; In 95.5 1.6 3.4E-05 42.1 16.9 149 300-462 174-323 (539)
271 COG0457 NrfG FOG: TPR repeat [ 95.4 1.8 3.8E-05 38.5 31.9 200 329-536 59-264 (291)
272 PF13174 TPR_6: Tetratricopept 95.4 0.025 5.4E-07 31.7 3.4 32 545-576 2-33 (33)
273 PF04053 Coatomer_WDAD: Coatom 95.4 0.41 8.8E-06 46.7 13.5 158 93-284 270-427 (443)
274 PF08631 SPO22: Meiosis protei 95.4 2.1 4.6E-05 39.2 24.0 163 401-570 86-273 (278)
275 PRK15180 Vi polysaccharide bio 95.4 2.6 5.6E-05 40.2 27.3 122 95-219 300-421 (831)
276 KOG4648 Uncharacterized conser 95.4 0.049 1.1E-06 48.8 6.5 92 441-542 104-197 (536)
277 PF12921 ATP13: Mitochondrial 95.3 0.31 6.8E-06 37.9 10.1 53 429-484 47-99 (126)
278 PF08631 SPO22: Meiosis protei 95.1 2.7 5.8E-05 38.5 24.7 101 331-434 86-192 (278)
279 PF10300 DUF3808: Protein of u 95.1 4.1 8.8E-05 40.6 23.2 118 342-462 246-375 (468)
280 PF10602 RPN7: 26S proteasome 94.6 1.2 2.7E-05 37.3 12.4 99 366-464 38-143 (177)
281 PF10345 Cohesin_load: Cohesin 94.4 7.3 0.00016 40.6 40.0 195 375-571 372-605 (608)
282 PF10345 Cohesin_load: Cohesin 94.4 7.3 0.00016 40.6 43.4 196 340-536 372-605 (608)
283 KOG2396 HAT (Half-A-TPR) repea 94.3 5.6 0.00012 38.5 39.9 99 470-571 456-558 (568)
284 COG2976 Uncharacterized protei 94.1 3 6.4E-05 34.8 13.2 92 56-149 93-189 (207)
285 KOG0890 Protein kinase of the 94.1 16 0.00034 43.0 27.8 367 194-584 1388-1796(2382)
286 KOG4642 Chaperone-dependent E3 94.0 0.45 9.7E-06 40.7 8.4 99 487-589 24-124 (284)
287 KOG4648 Uncharacterized conser 94.0 0.78 1.7E-05 41.5 10.3 94 406-507 104-197 (536)
288 PF10602 RPN7: 26S proteasome 93.8 0.96 2.1E-05 37.9 10.4 95 474-568 37-138 (177)
289 PF06552 TOM20_plant: Plant sp 93.7 1.4 3.1E-05 36.1 10.6 58 473-538 69-137 (186)
290 KOG2471 TPR repeat-containing 93.7 2.5 5.5E-05 40.5 13.4 114 442-556 248-382 (696)
291 PF09613 HrpB1_HrpK: Bacterial 93.7 3.2 6.9E-05 33.6 12.8 19 129-147 54-72 (160)
292 smart00299 CLH Clathrin heavy 93.6 3.1 6.8E-05 33.3 15.6 15 483-497 79-93 (140)
293 KOG3941 Intermediate in Toll s 93.4 0.96 2.1E-05 39.8 9.6 105 81-204 64-173 (406)
294 PF02259 FAT: FAT domain; Int 93.3 7.8 0.00017 37.1 20.1 55 300-358 4-58 (352)
295 smart00299 CLH Clathrin heavy 93.3 3.5 7.6E-05 33.0 16.3 39 196-235 14-52 (140)
296 PF00515 TPR_1: Tetratricopept 93.3 0.21 4.5E-06 28.1 4.0 26 476-501 4-29 (34)
297 PF13176 TPR_7: Tetratricopept 93.1 0.26 5.5E-06 28.3 4.2 27 510-536 1-27 (36)
298 PF06552 TOM20_plant: Plant sp 93.0 1 2.2E-05 37.0 8.7 95 450-553 7-123 (186)
299 KOG2280 Vacuolar assembly/sort 92.9 12 0.00027 38.2 38.4 344 149-532 427-794 (829)
300 PF04097 Nic96: Nup93/Nic96; 92.9 13 0.00029 38.6 20.8 42 160-202 117-158 (613)
301 PF09205 DUF1955: Domain of un 92.8 3.6 7.9E-05 31.8 15.2 58 336-394 93-150 (161)
302 PRK15180 Vi polysaccharide bio 92.7 1.6 3.4E-05 41.6 10.6 125 446-577 301-425 (831)
303 KOG3941 Intermediate in Toll s 92.7 0.91 2E-05 39.9 8.5 115 118-251 66-186 (406)
304 PF14853 Fis1_TPR_C: Fis1 C-te 92.7 0.28 6.1E-06 31.0 4.2 35 545-579 3-37 (53)
305 PF07719 TPR_2: Tetratricopept 92.6 0.29 6.3E-06 27.4 4.0 25 477-501 5-29 (34)
306 PF13431 TPR_17: Tetratricopep 92.6 0.17 3.6E-06 28.6 2.8 23 431-453 10-32 (34)
307 COG3629 DnrI DNA-binding trans 92.4 1.7 3.7E-05 39.0 10.2 76 437-517 156-236 (280)
308 KOG1550 Extracellular protein 92.3 15 0.00032 37.7 27.9 178 240-429 228-427 (552)
309 PF09613 HrpB1_HrpK: Bacterial 92.3 5.3 0.00011 32.4 13.7 109 445-564 21-130 (160)
310 KOG1586 Protein required for f 92.2 7 0.00015 33.7 18.7 19 6-24 25-43 (288)
311 smart00028 TPR Tetratricopepti 92.1 0.27 5.8E-06 26.8 3.5 32 544-575 2-33 (34)
312 PF09205 DUF1955: Domain of un 91.8 4.9 0.00011 31.1 17.2 58 480-538 93-150 (161)
313 KOG3364 Membrane protein invol 91.7 2.1 4.6E-05 33.1 8.4 74 505-579 29-107 (149)
314 COG3629 DnrI DNA-binding trans 91.6 2.5 5.4E-05 38.0 10.3 75 401-476 155-230 (280)
315 PF13374 TPR_10: Tetratricopep 91.4 0.48 1E-05 28.1 4.2 31 543-573 2-32 (42)
316 PF02259 FAT: FAT domain; Int 91.3 14 0.0003 35.4 24.3 65 363-427 145-212 (352)
317 KOG1464 COP9 signalosome, subu 91.3 9.8 0.00021 33.5 24.7 119 369-487 150-286 (440)
318 TIGR02561 HrpB1_HrpK type III 91.1 6.6 0.00014 31.2 11.6 51 97-148 23-73 (153)
319 COG2909 MalT ATP-dependent tra 90.9 24 0.00051 37.2 27.2 226 304-533 425-684 (894)
320 PF13170 DUF4003: Protein of u 90.8 13 0.00029 34.2 18.7 62 490-551 160-225 (297)
321 COG2909 MalT ATP-dependent tra 90.4 26 0.00057 36.9 28.9 229 340-568 426-684 (894)
322 PF07035 Mic1: Colon cancer-as 90.3 9 0.0002 31.5 15.6 31 281-311 16-46 (167)
323 KOG4570 Uncharacterized conser 90.2 2.1 4.6E-05 38.4 8.3 49 134-182 115-163 (418)
324 KOG1920 IkappaB kinase complex 90.1 32 0.0007 37.6 28.9 26 226-251 792-819 (1265)
325 PF11207 DUF2989: Protein of u 90.1 3.9 8.4E-05 34.5 9.4 77 485-563 119-198 (203)
326 PRK09687 putative lyase; Provi 90.0 15 0.00033 33.6 27.1 60 292-355 35-98 (280)
327 KOG1550 Extracellular protein 89.9 25 0.00055 36.1 27.1 176 135-324 228-427 (552)
328 PF07721 TPR_4: Tetratricopept 89.8 0.47 1E-05 24.7 2.7 23 545-567 3-25 (26)
329 KOG1920 IkappaB kinase complex 89.2 38 0.00082 37.1 27.6 126 55-182 680-820 (1265)
330 PF07721 TPR_4: Tetratricopept 89.2 0.7 1.5E-05 24.0 3.0 23 54-76 3-25 (26)
331 PF09986 DUF2225: Uncharacteri 89.1 7 0.00015 34.0 10.8 89 487-575 91-197 (214)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 89.0 1.3 2.9E-05 31.8 5.1 48 488-535 22-69 (103)
333 PF11207 DUF2989: Protein of u 89.0 6.9 0.00015 33.1 10.1 73 136-209 123-198 (203)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 88.9 4.1 8.9E-05 29.4 7.4 48 526-573 25-72 (103)
335 KOG0376 Serine-threonine phosp 88.8 0.61 1.3E-05 44.5 4.3 86 487-576 18-105 (476)
336 KOG4642 Chaperone-dependent E3 88.6 9.6 0.00021 33.1 10.7 83 409-499 20-104 (284)
337 KOG0545 Aryl-hydrocarbon recep 88.6 7.8 0.00017 33.7 10.2 80 510-590 232-311 (329)
338 TIGR02561 HrpB1_HrpK type III 88.3 12 0.00025 30.0 11.0 56 59-114 17-74 (153)
339 COG1747 Uncharacterized N-term 88.1 28 0.0006 34.1 25.5 98 326-428 63-160 (711)
340 PF13181 TPR_8: Tetratricopept 87.9 0.91 2E-05 25.3 3.3 26 476-501 4-29 (34)
341 PF02284 COX5A: Cytochrome c o 87.8 4.6 0.0001 29.5 7.2 45 491-535 28-72 (108)
342 TIGR03504 FimV_Cterm FimV C-te 87.7 0.72 1.6E-05 27.8 2.7 22 549-570 5-26 (44)
343 KOG2066 Vacuolar assembly/sort 87.7 38 0.00082 35.2 31.1 102 58-166 362-467 (846)
344 PF13174 TPR_6: Tetratricopept 87.4 1.1 2.4E-05 24.7 3.4 26 438-463 4-29 (33)
345 PRK09687 putative lyase; Provi 87.3 23 0.00051 32.4 29.2 22 549-571 241-262 (280)
346 KOG1308 Hsp70-interacting prot 87.2 1 2.2E-05 41.0 4.6 120 445-573 125-245 (377)
347 COG1747 Uncharacterized N-term 87.0 32 0.0007 33.7 24.8 53 521-575 359-411 (711)
348 PF13374 TPR_10: Tetratricopep 87.0 1.6 3.6E-05 25.7 4.2 27 475-501 4-30 (42)
349 PF08424 NRDE-2: NRDE-2, neces 86.7 28 0.00061 32.7 16.2 30 545-574 156-185 (321)
350 PF02284 COX5A: Cytochrome c o 86.5 7.8 0.00017 28.4 7.7 51 526-576 28-78 (108)
351 PF13170 DUF4003: Protein of u 86.4 27 0.00059 32.2 21.3 14 275-288 119-132 (297)
352 COG4976 Predicted methyltransf 86.2 1.5 3.2E-05 37.4 4.7 66 518-585 5-71 (287)
353 PF07035 Mic1: Colon cancer-as 86.2 18 0.00038 29.8 15.9 134 105-252 15-148 (167)
354 KOG4570 Uncharacterized conser 85.8 19 0.00042 32.7 11.4 101 256-358 61-164 (418)
355 KOG2471 TPR repeat-containing 85.3 31 0.00067 33.6 13.1 41 131-171 29-69 (696)
356 COG4455 ImpE Protein of avirul 84.8 4.5 9.7E-05 34.4 6.8 72 476-551 4-80 (273)
357 KOG2063 Vacuolar assembly/sort 84.2 65 0.0014 34.7 17.0 38 163-200 600-637 (877)
358 COG3947 Response regulator con 83.9 33 0.00071 31.0 15.6 60 510-571 281-341 (361)
359 KOG0545 Aryl-hydrocarbon recep 83.8 29 0.00063 30.4 11.3 101 5-113 188-293 (329)
360 PF08424 NRDE-2: NRDE-2, neces 83.8 39 0.00084 31.8 18.2 122 381-504 48-185 (321)
361 KOG0276 Vesicle coat complex C 83.7 46 0.001 33.5 13.8 100 130-250 648-747 (794)
362 PF07163 Pex26: Pex26 protein; 82.4 20 0.00044 32.0 10.0 121 57-177 40-181 (309)
363 KOG0276 Vesicle coat complex C 82.4 23 0.0005 35.4 11.3 134 52-215 614-747 (794)
364 PF07720 TPR_3: Tetratricopept 82.4 4.8 0.0001 23.0 4.3 31 545-575 3-35 (36)
365 PRK10941 hypothetical protein; 82.2 9.9 0.00022 34.4 8.6 64 513-578 186-250 (269)
366 PRK11619 lytic murein transgly 82.0 71 0.0015 33.5 39.0 49 407-458 415-463 (644)
367 PRK11619 lytic murein transgly 81.6 73 0.0016 33.4 38.7 409 56-498 37-464 (644)
368 PF04190 DUF410: Protein of un 81.6 41 0.00088 30.5 16.2 125 428-572 43-170 (260)
369 COG4455 ImpE Protein of avirul 81.4 34 0.00074 29.4 10.7 72 439-517 6-81 (273)
370 PF00637 Clathrin: Region in C 81.0 0.85 1.8E-05 36.8 1.4 82 91-179 14-95 (143)
371 PF10579 Rapsyn_N: Rapsyn N-te 80.8 5.7 0.00012 27.5 4.9 46 485-530 18-65 (80)
372 KOG4507 Uncharacterized conser 80.6 8.9 0.00019 37.9 7.9 96 483-581 617-714 (886)
373 TIGR03504 FimV_Cterm FimV C-te 80.4 4.2 9.1E-05 24.5 3.8 22 126-147 6-27 (44)
374 PF12968 DUF3856: Domain of Un 80.4 23 0.00051 26.9 10.5 88 485-572 21-129 (144)
375 PF10579 Rapsyn_N: Rapsyn N-te 80.1 6.7 0.00014 27.2 5.1 50 519-568 17-68 (80)
376 PRK12798 chemotaxis protein; R 79.8 59 0.0013 31.2 22.1 51 342-392 125-176 (421)
377 KOG1464 COP9 signalosome, subu 79.2 46 0.001 29.6 17.4 207 290-500 22-258 (440)
378 PF00637 Clathrin: Region in C 78.9 1.3 2.8E-05 35.7 1.8 83 125-214 13-95 (143)
379 KOG2396 HAT (Half-A-TPR) repea 78.7 70 0.0015 31.5 37.4 67 82-149 103-170 (568)
380 KOG1308 Hsp70-interacting prot 78.4 1.3 2.8E-05 40.3 1.8 88 484-575 125-214 (377)
381 KOG4077 Cytochrome c oxidase, 76.4 21 0.00045 27.5 7.1 44 492-535 68-111 (149)
382 KOG4077 Cytochrome c oxidase, 76.2 8.3 0.00018 29.5 5.1 50 526-575 67-116 (149)
383 smart00028 TPR Tetratricopepti 76.0 6.1 0.00013 20.8 3.7 25 477-501 5-29 (34)
384 COG0790 FOG: TPR repeat, SEL1 75.8 67 0.0014 29.7 23.0 150 64-219 53-221 (292)
385 COG3947 Response regulator con 75.7 63 0.0014 29.3 16.2 59 226-285 281-339 (361)
386 COG4941 Predicted RNA polymera 75.3 66 0.0014 29.8 11.2 120 450-577 272-399 (415)
387 KOG2062 26S proteasome regulat 75.1 1.1E+02 0.0024 31.9 39.5 154 54-218 61-239 (929)
388 KOG0551 Hsp90 co-chaperone CNS 74.9 34 0.00075 31.5 9.4 93 437-532 84-177 (390)
389 KOG4507 Uncharacterized conser 74.8 13 0.00028 36.8 7.3 113 432-551 605-718 (886)
390 KOG3364 Membrane protein invol 74.8 24 0.00053 27.6 7.3 23 479-501 77-99 (149)
391 PF07575 Nucleopor_Nup85: Nup8 73.9 1.2E+02 0.0025 31.5 20.8 25 84-109 149-173 (566)
392 KOG4279 Serine/threonine prote 73.4 1.2E+02 0.0027 31.6 14.1 187 384-577 183-400 (1226)
393 KOG2582 COP9 signalosome, subu 73.1 83 0.0018 29.6 13.3 236 291-538 72-346 (422)
394 KOG2066 Vacuolar assembly/sort 72.9 1.3E+02 0.0028 31.6 30.9 169 90-287 362-533 (846)
395 PF07163 Pex26: Pex26 protein; 72.7 60 0.0013 29.3 10.1 87 231-317 90-181 (309)
396 COG0790 FOG: TPR repeat, SEL1 72.2 82 0.0018 29.1 24.9 116 379-504 92-222 (292)
397 PF09986 DUF2225: Uncharacteri 71.9 68 0.0015 28.0 11.3 26 513-538 170-195 (214)
398 PRK10941 hypothetical protein; 71.8 64 0.0014 29.3 10.7 76 476-553 184-261 (269)
399 PF11846 DUF3366: Domain of un 71.4 23 0.00049 30.3 7.6 36 539-574 140-175 (193)
400 KOG0376 Serine-threonine phosp 70.8 9.1 0.0002 36.9 5.3 101 408-518 13-115 (476)
401 KOG2062 26S proteasome regulat 70.8 1.4E+02 0.003 31.2 33.6 252 271-536 369-634 (929)
402 PF14853 Fis1_TPR_C: Fis1 C-te 70.5 25 0.00054 22.4 5.7 28 480-509 8-35 (53)
403 COG5159 RPN6 26S proteasome re 70.4 83 0.0018 28.4 20.4 53 265-317 9-68 (421)
404 PF12862 Apc5: Anaphase-promot 68.8 20 0.00044 26.2 5.8 54 520-573 10-71 (94)
405 PF04097 Nic96: Nup93/Nic96; 68.0 1.6E+02 0.0035 30.8 25.0 22 483-507 515-536 (613)
406 PF07575 Nucleopor_Nup85: Nup8 67.9 1.6E+02 0.0034 30.6 17.3 26 119-145 149-174 (566)
407 KOG3807 Predicted membrane pro 66.9 1.1E+02 0.0023 28.3 11.5 115 411-544 228-347 (556)
408 PF12862 Apc5: Anaphase-promot 66.3 31 0.00067 25.2 6.4 23 479-501 47-69 (94)
409 COG4259 Uncharacterized protei 66.1 26 0.00056 25.5 5.4 33 543-575 72-104 (121)
410 KOG3824 Huntingtin interacting 65.4 16 0.00034 33.0 5.3 59 520-580 128-187 (472)
411 PF13929 mRNA_stabil: mRNA sta 64.6 1.1E+02 0.0025 27.8 15.5 63 361-423 199-262 (292)
412 KOG2908 26S proteasome regulat 63.4 87 0.0019 29.1 9.5 55 446-501 87-143 (380)
413 PF10516 SHNi-TPR: SHNi-TPR; 63.1 9.2 0.0002 22.2 2.4 30 544-573 2-31 (38)
414 PF10366 Vps39_1: Vacuolar sor 62.1 16 0.00034 27.6 4.2 26 546-571 42-67 (108)
415 cd00280 TRFH Telomeric Repeat 61.7 74 0.0016 26.6 8.0 40 479-521 117-156 (200)
416 PF09670 Cas_Cas02710: CRISPR- 61.6 1.6E+02 0.0035 28.5 12.3 51 376-427 143-197 (379)
417 PF00244 14-3-3: 14-3-3 protei 60.7 87 0.0019 27.8 9.2 39 301-339 8-46 (236)
418 PF13934 ELYS: Nuclear pore co 60.4 1.2E+02 0.0026 26.7 12.3 173 11-211 22-198 (226)
419 smart00777 Mad3_BUB1_I Mad3/BU 60.1 81 0.0017 24.6 9.2 43 526-568 81-124 (125)
420 PF14689 SPOB_a: Sensor_kinase 60.0 25 0.00055 23.2 4.4 29 507-535 22-50 (62)
421 PF04910 Tcf25: Transcriptiona 59.3 1.7E+02 0.0037 28.1 18.4 93 480-574 110-224 (360)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 59.2 85 0.0018 24.6 12.7 43 102-144 81-124 (126)
423 PHA02537 M terminase endonucle 59.1 1.1E+02 0.0024 26.9 9.2 27 335-361 89-115 (230)
424 PF11817 Foie-gras_1: Foie gra 59.0 58 0.0013 29.2 8.0 57 510-566 180-241 (247)
425 PF02184 HAT: HAT (Half-A-TPR) 58.4 26 0.00056 19.4 3.4 22 489-512 3-24 (32)
426 KOG0890 Protein kinase of the 58.3 4.3E+02 0.0092 32.4 36.5 326 229-576 1388-1735(2382)
427 KOG0686 COP9 signalosome, subu 58.2 1.8E+02 0.0039 28.0 13.9 55 55-109 153-212 (466)
428 TIGR02508 type_III_yscG type I 58.1 74 0.0016 23.5 7.2 50 164-219 49-98 (115)
429 PF14689 SPOB_a: Sensor_kinase 58.0 31 0.00067 22.8 4.5 21 160-180 29-49 (62)
430 KOG0128 RNA-binding protein SA 57.8 2.6E+02 0.0057 29.8 33.1 97 118-217 112-218 (881)
431 KOG1463 26S proteasome regulat 57.7 1.7E+02 0.0036 27.4 20.5 53 268-320 13-74 (411)
432 PF04910 Tcf25: Transcriptiona 57.6 1.8E+02 0.004 27.9 17.6 144 62-217 20-167 (360)
433 PF11846 DUF3366: Domain of un 56.6 67 0.0015 27.4 7.8 44 491-536 129-172 (193)
434 KOG0530 Protein farnesyltransf 56.6 1.5E+02 0.0033 26.6 13.5 163 409-579 53-223 (318)
435 KOG2063 Vacuolar assembly/sort 56.5 3E+02 0.0065 30.0 21.0 28 156-183 506-533 (877)
436 PF04190 DUF410: Protein of un 56.5 1.6E+02 0.0034 26.8 18.0 26 257-282 88-113 (260)
437 PF06957 COPI_C: Coatomer (COP 55.9 45 0.00098 32.4 7.0 31 545-575 302-332 (422)
438 PF14561 TPR_20: Tetratricopep 55.8 76 0.0017 23.0 7.5 31 83-113 21-51 (90)
439 KOG2908 26S proteasome regulat 55.8 1.8E+02 0.0039 27.2 10.5 86 479-564 81-178 (380)
440 cd08819 CARD_MDA5_2 Caspase ac 55.8 74 0.0016 22.8 7.1 16 166-181 48-63 (88)
441 KOG0686 COP9 signalosome, subu 54.8 2.1E+02 0.0045 27.6 15.1 26 331-356 152-177 (466)
442 PF11838 ERAP1_C: ERAP1-like C 54.7 1.9E+02 0.0041 27.2 19.7 165 415-589 146-321 (324)
443 PF11817 Foie-gras_1: Foie gra 54.5 79 0.0017 28.4 8.1 58 438-495 182-240 (247)
444 COG5116 RPN2 26S proteasome re 53.7 2.5E+02 0.0055 28.4 14.6 158 54-219 61-238 (926)
445 PF11663 Toxin_YhaV: Toxin wit 53.4 14 0.00031 28.7 2.7 31 486-518 108-138 (140)
446 PF11663 Toxin_YhaV: Toxin wit 52.7 18 0.0004 28.2 3.1 28 168-197 109-136 (140)
447 KOG0530 Protein farnesyltransf 51.2 1.9E+02 0.004 26.1 19.5 219 342-570 56-295 (318)
448 KOG4521 Nuclear pore complex, 51.0 4E+02 0.0087 29.9 14.3 27 52-78 920-946 (1480)
449 PF10255 Paf67: RNA polymerase 50.8 1E+02 0.0022 29.9 8.4 99 472-570 74-191 (404)
450 KOG1839 Uncharacterized protei 50.1 4.3E+02 0.0094 30.0 13.8 166 406-571 939-1127(1236)
451 KOG1839 Uncharacterized protei 50.1 2.1E+02 0.0047 32.2 11.4 158 338-495 941-1121(1236)
452 PHA02537 M terminase endonucle 49.4 1.7E+02 0.0037 25.8 8.8 36 543-578 169-213 (230)
453 PRK10564 maltose regulon perip 48.3 57 0.0012 29.8 6.0 37 505-541 253-290 (303)
454 COG5187 RPN7 26S proteasome re 48.2 2.2E+02 0.0047 26.0 12.7 100 434-535 115-219 (412)
455 KOG0551 Hsp90 co-chaperone CNS 47.4 2.5E+02 0.0053 26.4 9.9 95 400-500 82-180 (390)
456 PRK13800 putative oxidoreducta 47.0 4.5E+02 0.0098 29.3 30.3 154 397-571 726-880 (897)
457 KOG2422 Uncharacterized conser 46.3 3.4E+02 0.0073 27.7 15.9 151 45-199 277-460 (665)
458 PF09670 Cas_Cas02710: CRISPR- 45.8 2.9E+02 0.0063 26.8 11.8 18 341-358 143-160 (379)
459 KOG2581 26S proteasome regulat 45.4 2.9E+02 0.0063 26.7 12.2 66 510-575 211-279 (493)
460 PF14561 TPR_20: Tetratricopep 44.9 1.2E+02 0.0026 22.0 9.5 54 507-560 21-75 (90)
461 TIGR02508 type_III_yscG type I 44.8 1.3E+02 0.0028 22.4 7.9 49 94-148 49-97 (115)
462 PRK13800 putative oxidoreducta 44.6 4.9E+02 0.011 29.0 27.7 125 398-536 755-880 (897)
463 KOG2300 Uncharacterized conser 44.2 3.4E+02 0.0073 27.0 38.4 161 340-500 334-512 (629)
464 smart00386 HAT HAT (Half-A-TPR 43.9 50 0.0011 17.4 4.1 14 100-113 3-16 (33)
465 KOG4521 Nuclear pore complex, 43.8 5.2E+02 0.011 29.1 15.2 133 437-576 986-1136(1480)
466 COG0735 Fur Fe2+/Zn2+ uptake r 43.6 1.5E+02 0.0033 23.9 7.3 60 108-168 10-69 (145)
467 PF10366 Vps39_1: Vacuolar sor 43.3 1.4E+02 0.0031 22.5 7.9 26 122-147 42-67 (108)
468 KOG0292 Vesicle coat complex C 42.8 2.8E+02 0.006 29.9 10.3 55 525-579 1064-1120(1202)
469 KOG3677 RNA polymerase I-assoc 42.1 2.1E+02 0.0046 27.6 8.7 60 122-181 238-299 (525)
470 COG0735 Fur Fe2+/Zn2+ uptake r 42.0 1.2E+02 0.0026 24.5 6.5 25 195-219 26-50 (145)
471 KOG3677 RNA polymerase I-assoc 42.0 3.3E+02 0.0072 26.4 11.6 61 87-147 238-300 (525)
472 PF04348 LppC: LppC putative l 42.0 8.5 0.00018 39.1 0.0 116 479-594 30-151 (536)
473 PF13929 mRNA_stabil: mRNA sta 41.4 2.8E+02 0.0062 25.4 16.8 116 99-214 143-263 (292)
474 KOG0687 26S proteasome regulat 40.6 3.1E+02 0.0067 25.6 15.3 38 437-474 107-144 (393)
475 PF15297 CKAP2_C: Cytoskeleton 39.7 3.3E+02 0.0072 25.7 10.2 64 489-554 119-186 (353)
476 PRK09857 putative transposase; 38.9 2.5E+02 0.0053 26.1 8.8 63 123-186 210-272 (292)
477 cd00280 TRFH Telomeric Repeat 38.4 2.4E+02 0.0053 23.8 11.1 20 163-182 120-139 (200)
478 COG5108 RPO41 Mitochondrial DN 38.4 2.5E+02 0.0055 29.0 9.0 91 89-182 33-131 (1117)
479 COG5191 Uncharacterized conser 37.8 62 0.0013 29.6 4.5 76 470-549 104-182 (435)
480 KOG0687 26S proteasome regulat 37.7 3.5E+02 0.0075 25.3 15.4 100 364-465 104-212 (393)
481 PRK12798 chemotaxis protein; R 37.7 4E+02 0.0086 26.0 22.9 50 272-321 125-175 (421)
482 PRK10564 maltose regulon perip 37.0 86 0.0019 28.7 5.4 37 86-122 259-295 (303)
483 COG5108 RPO41 Mitochondrial DN 37.0 2.7E+02 0.0059 28.8 9.0 71 57-130 33-114 (1117)
484 PF08311 Mad3_BUB1_I: Mad3/BUB 36.4 2.1E+02 0.0045 22.4 13.5 44 526-569 81-125 (126)
485 PHA02875 ankyrin repeat protei 35.6 4.4E+02 0.0095 25.9 13.9 15 161-175 72-86 (413)
486 PF05944 Phage_term_smal: Phag 34.6 2.3E+02 0.005 22.4 8.1 31 121-151 50-80 (132)
487 PF11848 DUF3368: Domain of un 34.6 1.1E+02 0.0025 18.8 5.2 30 131-160 14-43 (48)
488 KOG1166 Mitotic checkpoint ser 34.0 2.8E+02 0.0061 30.7 9.4 74 484-557 89-163 (974)
489 PF15469 Sec5: Exocyst complex 33.4 2.9E+02 0.0064 23.2 9.1 24 478-501 91-114 (182)
490 PRK13341 recombination factor 33.2 6.5E+02 0.014 27.2 18.3 130 380-522 170-307 (725)
491 KOG4567 GTPase-activating prot 32.9 3.3E+02 0.0071 25.2 8.1 71 139-214 263-343 (370)
492 KOG0991 Replication factor C, 32.7 3.5E+02 0.0077 23.9 13.0 140 366-514 132-279 (333)
493 KOG4567 GTPase-activating prot 32.5 4.1E+02 0.0089 24.7 9.2 57 314-375 263-319 (370)
494 PF12926 MOZART2: Mitotic-spin 32.3 1.9E+02 0.0041 20.7 5.8 42 105-146 29-70 (88)
495 PF15297 CKAP2_C: Cytoskeleton 32.2 2.1E+02 0.0046 26.9 7.1 65 523-589 118-186 (353)
496 COG4976 Predicted methyltransf 31.5 1.3E+02 0.0028 26.4 5.2 53 443-501 4-57 (287)
497 cd08819 CARD_MDA5_2 Caspase ac 31.4 2E+02 0.0043 20.7 6.9 14 378-391 50-63 (88)
498 KOG0292 Vesicle coat complex C 31.4 7.2E+02 0.016 27.1 11.2 21 3-23 914-934 (1202)
499 COG2912 Uncharacterized conser 31.4 2.3E+02 0.005 25.7 7.0 59 517-577 190-249 (269)
500 PF11838 ERAP1_C: ERAP1-like C 31.1 4.5E+02 0.0097 24.6 17.9 26 68-93 56-82 (324)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-67 Score=556.45 Aligned_cols=544 Identities=22% Similarity=0.332 Sum_probs=460.3
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHH--------------hhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCC
Q 036303 2 FYVLANAKLYKNARCLIKDVTENL--------------LKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGH 67 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 67 (605)
++.|...|++.+|..++.++...- +...+....+..++..+.... ...+...++.++..|.+.|+
T Consensus 58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCC
Confidence 567889999999999998876520 011112224455565554433 34567789999999999999
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 68 IEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
++.|+++|+++.. |+..+|+.++.+|.+.|++++|.++|++|...|+.||..+|+.++.+|...+++..+.+++..+.+
T Consensus 137 ~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 137 LVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred hHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 9999999999974 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchH
Q 036303 148 KGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTF 227 (605)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 227 (605)
.|+.||..+++.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|...|+.||..||
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 99999999999999999999999999999998864 68889999999999999999999999999988899999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 036303 228 GVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 228 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (605)
+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhC
Confidence 999999999999999999999998888888999999999999888888888888888863 7888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 308 GQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
|++++|..+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------------------------------
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTV------------------------------ 437 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------------------------ 437 (605)
++|.. +|..+|+.++.+|...|+.++|..+|++|.. ++.||..++
T Consensus 448 ~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 77653 3555666666666666666666666666654 345555555
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036303 438 -----SSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYT 512 (605)
Q Consensus 438 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (605)
+.++.+|.++|++++|.++|+++ .+|..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~---------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH---------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc---------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 45556666667777777776654 4788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-HCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMI-KMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++++|.+.|++++|.++++++
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999999999999 7899999999999999999999999999999987
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-66 Score=533.56 Aligned_cols=519 Identities=20% Similarity=0.280 Sum_probs=442.8
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 036303 49 KFNPSVFSTLIIAFSEMGHIEEALWVYRKIE----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGV 124 (605)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (605)
..+...|..+...+++.|++++|+++|++|. .+++...+..++..|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 3455567777888888888888888888883 335556667778888888888888888887753 78888888
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 036303 125 LIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVAD 204 (605)
Q Consensus 125 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 204 (605)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 205 VNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK--FGVFPNIFVYNCLIDGHCKAGNLFEAMSLC 282 (605)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 282 (605)
+++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888875 567888888888888888888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 036303 283 SEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP 362 (605)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (605)
++|.+.+++|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|.+.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+..+|+.++.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc-----------------------cCCHHHHHHHHHHH
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY-----------------------DGQILKASKLFSDM 499 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~ 499 (605)
+|.+.|++++|.+++.++.+.. +.||..+|+.++..|.+ .+..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~G----i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDG----IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 8888888888888888887754 68888888888765432 12357899999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 500 RSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
++.|+.||..||..++.++...+....+..+++.|...+..|+..+|..+++++.+. .++|..+++.|.+.+.-..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 999999999999999987778889999999998888778888999999999988432 3689999999999976443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.8e-66 Score=531.85 Aligned_cols=520 Identities=21% Similarity=0.350 Sum_probs=485.0
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 036303 17 LIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK 96 (605)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (605)
.+..+...+++.++.. .+..+|+.+......+.+...+..++..|.+.|.+++|+.+|+.+.. |+..+|+.++.+|.+
T Consensus 372 ~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 3444444455566655 78899999987666666777788899999999999999999999976 899999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 97 KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESM 176 (605)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (605)
.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHh--CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 177 FRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLH--HNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFG 254 (605)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (605)
|+.|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036303 255 VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNS 334 (605)
Q Consensus 255 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (605)
+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 036303 335 LIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414 (605)
Q Consensus 335 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (605)
++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhhhccCCCCCCc
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFK----N-------------------GRISNALNFFLEKTDKTDGGYCSP 471 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~ 471 (605)
+++|..++.+|.+.|+.||..+++.++..|.+ + +..++|+.+|++|.... +.|
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G----i~P 845 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG----TLP 845 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC----CCC
Confidence 99999999999999999999999999866432 1 12367999999998864 799
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAV 544 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 544 (605)
|..+|+.++.++...+....+..+++.|...+..|+..+|+.+++++.+. .++|..+++.|.+.|+.|+..
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999988888899999999999998878889999999999998432 468999999999999999753
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-66 Score=546.81 Aligned_cols=554 Identities=19% Similarity=0.283 Sum_probs=506.8
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHHhhc--------------CCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCC
Q 036303 2 FYVLANAKLYKNARCLIKDVTENLLKS--------------RKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGH 67 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 67 (605)
+..+...|++.+|..++..+...-..- ......+.+++..+... +...++.+++.++.+|++.|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCC
Confidence 456677777777777777665320000 00011233444444332 334577789999999999999
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 68 IEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
+++|..+|+++.. ++..+|+.++.+|.+.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.+++..+.+
T Consensus 238 ~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 238 VVSARLVFDRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred HHHHHHHHhcCCC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999975 688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchH
Q 036303 148 KGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTF 227 (605)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 227 (605)
.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|...|+.||..+|
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 99999999999999999999999999999999974 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 036303 228 GVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 228 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (605)
..++.+|++.|+++.|.++++.+.+.|+.++..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999975 7889999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 308 GQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (605)
+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+++.+..+
T Consensus 548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-- 620 (857)
T PLN03077 548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-- 620 (857)
T ss_pred Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC--
Confidence 886 5799999999999999999999999999999999999999999999999999999999999999985543
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHH
Q 036303 468 YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVIN 546 (605)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 546 (605)
+.|+..+|+.++.++.+.|++++|.+++++|. +.||..+|..|+.+|...|+.+.+....+++.+ +.| +...|
T Consensus 621 -i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y 694 (857)
T PLN03077 621 -ITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYY 694 (857)
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchH
Confidence 79999999999999999999999999999985 789999999999999999999999999988887 566 58888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 547 QVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
..+.+.|.+.|+|++|.++.+.|++.+....|.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999998877764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-61 Score=498.43 Aligned_cols=478 Identities=18% Similarity=0.301 Sum_probs=454.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 82 PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCG-LVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
.+...|+.++..+.+.|++++|.++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999998764 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 036303 161 IHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (605)
+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|..|+..+|..++.+|+..|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999975 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKM 320 (605)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (605)
+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|..+|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 78999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 321 YKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV 400 (605)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 400 (605)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++||..+++.++.+|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 46999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (605)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.+.+.. ++.|+..+|+.++
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~---g~~p~~~~y~~li 469 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH---RIKPRAMHYACMI 469 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCCCccchHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998753 3789999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCh
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDL 559 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 559 (605)
.+|.+.|++++|.+++++| +..|+..+|+.++.+|...|+++.|..+++++.+ +.| +..+|..++++|.+.|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCH
Confidence 9999999999999999887 4789999999999999999999999999999875 556 578999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCC
Q 036303 560 KSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 560 ~~A~~~~~~~~~~~~~~~~~ 579 (605)
++|.++++.|++.+....|.
T Consensus 545 ~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 545 AEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHHHHHHHHHHcCCccCCC
Confidence 99999999999998765543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-59 Score=486.01 Aligned_cols=469 Identities=21% Similarity=0.308 Sum_probs=448.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 036303 52 PSVFSTLIIAFSEMGHIEEALWVYRKIE----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLID 127 (605)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 127 (605)
...|+.++..+.+.|++++|+++|+.+. ..|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3478999999999999999999999883 468899999999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHH
Q 036303 128 CCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNR 207 (605)
Q Consensus 128 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 207 (605)
+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++.+.|..+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999996 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036303 208 ALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK 287 (605)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 287 (605)
+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|++++|.++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996 46899999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 036303 288 FEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTF 367 (605)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (605)
.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 688999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 036303 368 SSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLE-AKITPSVFTVSSLIHGLFK 446 (605)
Q Consensus 368 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 446 (605)
+.++.+|++.|+.++|.++|++|...|+.||..||+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++.+|.+
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999986 5899999999999999999
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 036303 447 NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 525 (605)
.|++++|.++++++. ..|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..+|..++..|.+.|+++
T Consensus 475 ~G~~~eA~~~~~~~~-------~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 475 EGLLDEAYAMIRRAP-------FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred cCCHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHH
Confidence 999999999998763 479999999999999999999999999999986 6675 559999999999999999
Q ss_pred HHHHHHHHHHHCCCCc
Q 036303 526 DVMMLLADMIKMGIVP 541 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~ 541 (605)
+|.++++.|.+.|+..
T Consensus 546 ~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 546 EAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHHcCCcc
Confidence 9999999999998764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.3e-36 Score=324.89 Aligned_cols=562 Identities=14% Similarity=0.083 Sum_probs=445.4
Q ss_pred hHhhcCCchHHHHHHHH--------------HHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChH
Q 036303 4 VLANAKLYKNARCLIKD--------------VTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIE 69 (605)
Q Consensus 4 ~~~~~~~~~~a~~~~~~--------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 69 (605)
++...|++.+|...+.. +...+...++.. .+...++.+... .+.++..+..++..+.+.|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD-EAIATLSPALGL--DPDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCCCHH
Confidence 45566777766655542 344555665555 666777665432 4457788889999999999999
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 70 EALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 70 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
+|.+.|+++. .+.+...+..+...+...|++++|.+.|+.+....+. .......++..+.+.|++++|..+++.+..
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999998872 4456778888888889999999999999998877533 445666677888899999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchH
Q 036303 148 KGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTF 227 (605)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 227 (605)
.. +.+..++..+..++...|++++|.+.|+++.+..+. +...+..++..+...|++++|.+.++++...+ +.+..++
T Consensus 460 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 460 KQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred hC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 63 456778888899999999999999999998876433 55667778888889999999999999988764 4567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 036303 228 GVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 228 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (605)
..+...+.+.|+.++|...++.+.+.+ +.+...+..++..|...|++++|..+++.+.... +.+...|..+...+...
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 888888888999999999998887764 4566677788888999999999999999887754 45677888888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 308 GQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|..++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999888764 3466778888888888999999999999888764 346778888888899999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (605)
+.+.... +.+...+..+...+...|++++|...|+++...+ |+..++..++.++.+.|++++|.+.+++++...
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--- 766 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--- 766 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 8888775 4466777778888888999999999999988764 444677778888889999999999998888764
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHH
Q 036303 468 YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVIN 546 (605)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 546 (605)
+.+...+..++..|...|++++|.+.|+++.+.. +++...+..+...+...|+ .+|+..++++++. .| ++.++
T Consensus 767 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~ 840 (899)
T TIGR02917 767 --PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAIL 840 (899)
T ss_pred --CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHH
Confidence 5567788888888888999999999999988742 3456688888888888888 7799999988873 34 57778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhh
Q 036303 547 QVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFL 588 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (605)
..++.++...|++++|...++++.+.+|.++.........+.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 888888999999999999999999988886555444444333
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-35 Score=322.94 Aligned_cols=553 Identities=15% Similarity=0.082 Sum_probs=337.0
Q ss_pred HhhcCCchHHHHHHHHHH--------------HHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHH
Q 036303 5 LANAKLYKNARCLIKDVT--------------ENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEE 70 (605)
Q Consensus 5 ~~~~~~~~~a~~~~~~l~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 70 (605)
+...|++.+|...+..++ ..+...++.. .+...|...... .|.++..+..++..+.+.|++++
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE-QAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHH
Confidence 344566666665554431 2223333333 555555554332 23345556666666666777777
Q ss_pred HHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 71 ALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 71 A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
|...++.+ ..+.+...+..++..+.+.|++++|.+.|+++....+ .+...+..+..++...|++++|...++.+.+.
T Consensus 348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 77666665 2334455666666666667777777777766665532 24555666666666667777777777666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHH
Q 036303 149 GIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFG 228 (605)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 228 (605)
... .......++..+.+.|++++|..+++.+.... +++..+|..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 322 23344455666666677777777766666542 2355566666666666677777777776666542 33445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 036303 229 VLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVG 308 (605)
Q Consensus 229 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (605)
.++..+...|++++|...++.+.... +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+...|
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC
Confidence 66666666677777777776666543 3455566666666666677777777776665543 344455566666666667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 309 QLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYT 388 (605)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 388 (605)
++++|..+++.+.... +.+...|..++.++...|++++|...++++.+.. +.+...+..+..++...|++++|...++
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766666543 3455666666666666677777777776666553 2345556666666666677777777776
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 036303 389 EMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY 468 (605)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 468 (605)
++.... +.+..++..++..+...|++++|..+++.+.+.. +.+...+..++..+...|++++|++.|+++...
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----- 732 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR----- 732 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----
Confidence 666543 3345566666666666677777777776666654 445556666666666667777777777666654
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 036303 469 CSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQV 548 (605)
Q Consensus 469 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (605)
.|+..++..++.++...|++++|.+.++++.+. .+.+...+..++..|...|++++|...++++++.. ++++.++..
T Consensus 733 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 809 (899)
T TIGR02917 733 -APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN 809 (899)
T ss_pred -CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 233345556666666667777777776666653 12344466666666666677777777777666532 235666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++.++...|+ ++|+..++++.+..|+++..
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 6666777666 66777777776666655443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.7e-27 Score=257.04 Aligned_cols=541 Identities=13% Similarity=0.051 Sum_probs=364.5
Q ss_pred HHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHH----
Q 036303 14 ARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQAC---- 87 (605)
Q Consensus 14 a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~---- 87 (605)
+...+-+.++.....++++ .+.+.+..+... .|.+|.++..++..+.+.|+.++|.+.++++. .|.+..++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d-~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~ 103 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHRED-LVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT 103 (1157)
T ss_pred HHHHHHHHHHHHHhhCChH-HHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3444444445445555555 677777766443 55688888889999999999999999998872 33333322
Q ss_pred ------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH
Q 036303 88 ------------NALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV-TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTV 154 (605)
Q Consensus 88 ------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 154 (605)
..++..+...|++++|.+.|+.+...+++ +.. ............|+.++|+..++++.+.. +.+.
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~ 181 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNT 181 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCH
Confidence 33445677889999999999998876433 332 12122222334588999999999988874 3366
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------C--------------CCcccH----------
Q 036303 155 VIYTILIHGLCNENKMVEAESMFRSMRECGV------------------V--------------PNLYTY---------- 192 (605)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~--------------p~~~~~---------- 192 (605)
..+..+...+...|+.++|+..++++..... . |+....
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 7788888888888999999888888754311 0 110000
Q ss_pred -----------HHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHh
Q 036303 193 -----------NALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFP-NIF 260 (605)
Q Consensus 193 -----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 260 (605)
......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...|+++.+..... ...
T Consensus 262 ~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 262 QKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred HHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence 011344567788899999998888763 4467788888888889999999999998887754221 111
Q ss_pred hH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 261 VY------------NCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN 328 (605)
Q Consensus 261 ~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 328 (605)
.+ ......+.+.|++++|+..|+++.... +.+...+..+...+...|++++|+..|+++.+... .+
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~ 418 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GN 418 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 11 122445678888999999998888764 34566677788888888999999998888887542 22
Q ss_pred HHHHHHH------------------------------------------HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHH
Q 036303 329 VVTYNSL------------------------------------------IDGYCKEGDMEKALSVCSQMTEKGVEPNVVT 366 (605)
Q Consensus 329 ~~~~~~l------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 366 (605)
...+..+ ...+...|++++|+..++++.+..+ .+...
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~ 497 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWL 497 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 3333222 2334567888888888888887643 35666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------
Q 036303 367 FSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA------------------ 428 (605)
Q Consensus 367 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------ 428 (605)
+..+...|...|++++|...++++.... +.+...+..+...+...++.++|...++.+...
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 7778888888888888888888887653 223333332322333344444444433322100
Q ss_pred ---------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC
Q 036303 429 ---------------------KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG 487 (605)
Q Consensus 429 ---------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 487 (605)
..+.+...+..+...+.+.|++++|+..|++++... +.+...+..++.++...|
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-----P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-----PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCC
Confidence 124455566777778888888888888888888763 455777788888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--Cc---cHHHHHHHHHHHHhcCChhH
Q 036303 488 QILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGI--VP---DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~ 561 (605)
++++|++.++++.+ ..|+ ...+..+..++...|++++|.+.+++++.... +| +..++..+++.+...|++++
T Consensus 652 ~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 652 DLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 88888888888776 4444 34666677788888888888888888875321 11 23466677888888888888
Q ss_pred HHHHHHHHHh
Q 036303 562 AFRCSEFLKE 571 (605)
Q Consensus 562 A~~~~~~~~~ 571 (605)
|+..|+++..
T Consensus 730 A~~~y~~Al~ 739 (1157)
T PRK11447 730 ALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHh
Confidence 8888888875
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=6.3e-26 Score=246.47 Aligned_cols=514 Identities=11% Similarity=-0.004 Sum_probs=382.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH--------
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTY-------- 122 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------- 122 (605)
..+...++.....++.+.|.+.++++ ..+.++.++..++..+.+.|+.++|.+.++++.+..+. +....
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~ 107 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHh
Confidence 34667888899999999999999988 36667888999999999999999999999999987533 33322
Q ss_pred --------HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 036303 123 --------GVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVV-IYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN 193 (605)
Q Consensus 123 --------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 193 (605)
..+...+...|++++|++.|+.+.+.+ +|+.. ....+.......|+.++|++.++++.+..+. +...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 334457888999999999999999874 33332 2222222333569999999999999997544 667788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCC----------------C----------------CCcchH--------------
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNL----------------Q----------------PNVVTF-------------- 227 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~----------------~~~~~~-------------- 227 (605)
.+...+...|++++|++.++++..... . |+....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 899999999999999999998754310 0 110000
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhH--
Q 036303 228 -------GVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISP-DVFTY-- 297 (605)
Q Consensus 228 -------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-- 297 (605)
......+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|+..|++..+..... ....|
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 012345667899999999999998864 4477888889999999999999999999998754221 11111
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 036303 298 ----------NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTF 367 (605)
Q Consensus 298 ----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (605)
......+...|++++|+..++++.... +.+...+..+...+...|++++|++.|+++.+.... +...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 122446678899999999999999875 346677888899999999999999999999886422 33333
Q ss_pred HHH------------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 036303 368 SSL------------------------------------------IDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTAL 405 (605)
Q Consensus 368 ~~l------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 405 (605)
..+ ...+...|++++|++.|++.+... +.+...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 222 233456788999999999888774 3356677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC------------------
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG------------------ 467 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------ 467 (605)
...|...|++++|...++++++.. +.+...+..+...+...++.++|+..++.+.......
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 888999999999999999988754 3444444444444445555555555544332110000
Q ss_pred -----------------CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036303 468 -----------------YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 468 -----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
..+.+...+..+...+...|++++|+..|+++++ ..|+ ...+..++.++...|++++|++
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 0134455667788888999999999999999998 4554 5588899999999999999999
Q ss_pred HHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 530 LLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 530 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.++++++ ..| +..++..++.++...|++++|.+.++++.+..|+.++
T Consensus 659 ~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 659 QLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9998876 344 5777888999999999999999999999998877665
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.4e-24 Score=224.81 Aligned_cols=516 Identities=12% Similarity=0.046 Sum_probs=337.0
Q ss_pred cHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036303 34 VCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI-EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVL 112 (605)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 112 (605)
.+...|+...+. .|.++.++..++..|.+.|++++|+..+++. ...|+...+..++..+ +++++|..+++++..
T Consensus 62 ~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~ 136 (987)
T PRK09782 62 TAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLA 136 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHH
Confidence 444445444332 4456888899999999999999999999887 3334433333333222 888899999999988
Q ss_pred CCCCCCHHhHHHHHHH--------HHccCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHC
Q 036303 113 CGLVADVVTYGVLIDC--------CCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL-IHGLCNENKMVEAESMFRSMREC 183 (605)
Q Consensus 113 ~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~ 183 (605)
..+. +..++..+... |.+. +.|.+.++ .......|+..+.... ..+|.+.|++++|+..+.++.+.
T Consensus 137 ~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 137 QQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred hCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 7433 45555555554 4444 44444444 3222223344444433 77778888888888888888776
Q ss_pred CCCCCcccHHHHHHHHhc-cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----
Q 036303 184 GVVPNLYTYNALMDGYCK-VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF-P---- 257 (605)
Q Consensus 184 ~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---- 257 (605)
++. +......+...|.. .++ +.+..+++. .+..+......++..+.+.|+.++|.++++++...... |
T Consensus 212 ~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 212 NTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred CCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 543 33334455555555 244 555555432 12235555666666666666666666666554221000 0
Q ss_pred --------------------------------------------------------------------------------
Q 036303 258 -------------------------------------------------------------------------------- 257 (605)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (605)
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence
Q ss_pred ---------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCC---HHHHHHH-------
Q 036303 258 ---------NIFVYNCLIDGHCKAGNLFEAMSLCSEMEKF-E-ISPDVFTYNILIKGLCGVGQ---LEGAEGL------- 316 (605)
Q Consensus 258 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~------- 316 (605)
+......+.....+.|+.++|..+|+..... + -.++......++..|.+.+. ..++..+
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 0011111111223345555555555555431 0 11122233345555555544 2222222
Q ss_pred ---------------HHHHHHC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 036303 317 ---------------LQKMYKE-G-ILA--NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA 377 (605)
Q Consensus 317 ---------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (605)
....... + .++ +...+..+..++.. ++.++|...+.+.... .|+......+...+...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQV 522 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHC
Confidence 1111111 1 123 55667777766665 7888899988887776 34544444455556789
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFF 457 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 457 (605)
|++++|...|+++... +|+...+..+...+...|++++|...+++.++.+ +.....+..+.......|++++|+..+
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988665 4455556677788899999999999999998875 344444444555555679999999999
Q ss_pred HHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 458 LEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
++.+.. .|+...+..+..++.+.|++++|+..++++.+ ..|+. ..+..+..++...|++++|+..++++++
T Consensus 600 ~~AL~l------~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 600 TRSLNI------APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHh------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999985 56788889999999999999999999999998 56654 4778888899999999999999999998
Q ss_pred CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCc
Q 036303 537 MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 537 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (605)
..| ++.++..++.++...|++++|+..++++.+.+|++.....
T Consensus 672 --l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 672 --GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 456 6889999999999999999999999999999998776654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-26 Score=212.08 Aligned_cols=453 Identities=14% Similarity=0.122 Sum_probs=313.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (605)
...+..-..+.|++.+|.+.-.-.-..+ +.+......+-..+.+..+++.....-....+.. +.-..+|..+.+.+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556666677888888877665544442 2244445555566666667776665555544442 3456778888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCCHHHHHH
Q 036303 167 ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVV-TFGVLMDGLCKVGELRAAGN 245 (605)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 245 (605)
.|++++|+..++.+++..++ ....|..+..++...|+.+.|.+.|.+.++. .|+.. ....+....-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 88888888888888876544 5777888888888888888888888887765 34322 33344555556778888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 246 FFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD-VFTYNILIKGLCGVGQLEGAEGLLQKMYKEG 324 (605)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (605)
.+.++++.. +.=...|+.|...+..+|+...|+..|++..+.+ |+ ...|..+...|...+.++.|...+.+.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 877777643 2234567777777778888888888888877643 33 4567777777777778888887777776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 036303 325 ILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTA 404 (605)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 404 (605)
+.....+..+...|...|.++.|++.|++.++..+ .=+..|+.|..++...|+..+|...|.+.+... +......+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 22445666677777778888888888888777632 235677778888888888888888887777663 224456677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQAL 483 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 483 (605)
|...|...|.+++|..+|....+-. +.-....+.|...|.++|++++|+..|++++.- .|+ ..+|+.++..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHH
Confidence 7777888888888888888777643 333556777777788888888888888877763 455 56777777788
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhH
Q 036303 484 CYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 561 (605)
-..|+.+.|++.+.+++. +.|... .++.|...|...|+..+|++-++.+++ ++|| +..+..++.++.--.+|..
T Consensus 433 ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence 888888888888887776 566543 777777778778888888888887776 5665 5666666555444444433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=3.6e-25 Score=203.34 Aligned_cols=443 Identities=16% Similarity=0.129 Sum_probs=277.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQ 132 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (605)
...|++-..+.|++.+|.+....+. ++.+......+...+.+..+++.....-....+.. +.-..+|..+.+.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 5556666667777777777666552 22222333333455555556665555444444442 22456777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-HHHHHhccCChHHHHHH
Q 036303 133 GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA-LMDGYCKVADVNRALEF 211 (605)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~ 211 (605)
|++++|+..++.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...+-..|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 77777777777777663 224567777777777777777777777776664 344333322 33344456777777777
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036303 212 YHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN-IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEI 290 (605)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 290 (605)
|.+.++.. +--...|..|...+-..|+...|++.|+++.+.. |+ ...|-.|...|...+.+++|+..+.......
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 77766642 2234556677777777777777777777776643 32 3456667777777777777777777666543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 036303 291 SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSL 370 (605)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (605)
+.....+..+...|..+|..+.|+..+++.++..+ .-...|+.|..++-..|+..+|.+.|.+.+... +......+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 23345566666667777777777777777766532 234567777777777777777777777777653 2245566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 371 IDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRI 450 (605)
Q Consensus 371 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (605)
...|...|.++.|..+|.....-. +--...++.|...|-..|++++|+..|++.+... +.-...++.++..|-..|+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhH
Confidence 777777777777777777666542 1123456667777777777777777777776642 22355677777777777777
Q ss_pred HHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 036303 451 SNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRG 517 (605)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~ 517 (605)
+.|+..+.+++.- .|. ..+.+.+...|-..|+..+|++-++.+++ ++||.. .+-.++.+
T Consensus 439 ~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 7777777777663 343 45566777777777777777777777776 566643 44444443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1e-23 Score=204.06 Aligned_cols=544 Identities=12% Similarity=0.041 Sum_probs=405.7
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC--
Q 036303 2 FYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-- 79 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 79 (605)
+++..++|+|..|..+|..++.. .+. .-+.....+...+.+.|+.+.|+..|..+.
T Consensus 171 A~i~ynkkdY~~al~yyk~al~i--------------------np~--~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 171 ARIAYNKKDYRGALKYYKKALRI--------------------NPA--CKADVRIGIGHCFWKLGMSEKALLAFERALQL 228 (1018)
T ss_pred HHHHhccccHHHHHHHHHHHHhc--------------------Ccc--cCCCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence 35666777777777777775542 111 223344556678889999999999998872
Q ss_pred CCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCC--CCH
Q 036303 80 VLPAIQACNALLNGLIKK---GKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIE--PTV 154 (605)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~ 154 (605)
.|.++.++..|...-... ..+..+..++.+.-..+ ..++...+.|.+.+...|+++.+..+...+...... .-.
T Consensus 229 dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 229 DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 444555555554443333 34667777887777764 348889999999999999999999999998876211 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 036303 155 VIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGL 234 (605)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (605)
..|-.+.++|-..|++++|...|.+.......-....+..+.+.+.+.|+++.+...|+.+.... +.+..+...+...|
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHH
Confidence 45778999999999999999999888876433224455668899999999999999999998873 55677888888888
Q ss_pred HhcC----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHh
Q 036303 235 CKVG----ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEM----EKFEISPDVFTYNILIKGLCG 306 (605)
Q Consensus 235 ~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 306 (605)
+..+ ..+.|..++.+..+.. +.|...|-.+...+....-+.. +..|... ...+.++.+...|.+...+..
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 7765 4677777777777653 5677788878777766554444 6666554 344445777889999999999
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 036303 307 VGQLEGAEGLLQKMYKE---GILANV------VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA 377 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (605)
.|+++.|...|...... ...+|. .+--.+..+.-..++.+.|.+.|..+.+.. +--...|..++......
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDK 543 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhc
Confidence 99999999999988764 122232 233345556677789999999999999873 22334555555444456
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh----------
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA-KITPSVFTVSSLIHGLFK---------- 446 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---------- 446 (605)
+...+|...+....... ..++..++.+...+.....+.-|.+-|..+.+. ...+|..+...|+..|..
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 78889999999888764 446666666777888888888888866666543 224688888888887653
Q ss_pred --cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 447 --NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 447 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (605)
.+..++|+++|.+++... +.|..+-+.++.+++..|++.+|..+|.+..+... ....+|..++.+|...|++
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-----pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-----PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-----cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHH
Confidence 345778999999888864 67778888999999999999999999999998532 3455888999999999999
Q ss_pred HHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 525 LDVMMLLADMIKMGI-VPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
..|++.|+...+.-. ..+..+...|++++.+.|.+.+|.++..+++...|.++..
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 999999999885433 3369999999999999999999999999999999987764
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.3e-22 Score=208.48 Aligned_cols=548 Identities=13% Similarity=0.034 Sum_probs=391.2
Q ss_pred ChhhHhhcCCchHHHHHHHHHHHH----------HhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHH--------H
Q 036303 1 IFYVLANAKLYKNARCLIKDVTEN----------LLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIA--------F 62 (605)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~ 62 (605)
++.++...|++++|+...+..+.. +... .....+...++.+... .|.+..++..++.. |
T Consensus 84 LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y 160 (987)
T PRK09782 84 LAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRL 160 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhh
Confidence 356788888888888888877631 1111 2223566777776443 44566777777776 7
Q ss_pred HhcCChHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc-cCChhHHHH
Q 036303 63 SEMGHIEEALWVYRKIEVLPAIQ-ACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG-QGDVMKALN 140 (605)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~ 140 (605)
.+.+...+|++ .+.....|... ....+.+.|.+.|++++|+.++.++.+.++. +......+..+|.. .++ +.+..
T Consensus 161 ~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~a 237 (987)
T PRK09782 161 AQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLA 237 (987)
T ss_pred hhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHH
Confidence 77777777777 33333333344 3444488999999999999999999988644 56667777778877 466 77777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcccHHHH------------------------
Q 036303 141 LFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVV-PNLYTYNAL------------------------ 195 (605)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l------------------------ 195 (605)
++... .+.+...+..++..|.+.|+.++|.++++++...-.. |...+|..+
T Consensus 238 l~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~ 313 (987)
T PRK09782 238 LQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQ 313 (987)
T ss_pred Hhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHH
Confidence 75542 2357888889999999999999999999888654222 333333211
Q ss_pred ------HHHHhccCChHHHHHHHH-----------------------------HHHhCCCCCCcchHHHHHHHHHhcCCH
Q 036303 196 ------MDGYCKVADVNRALEFYH-----------------------------EMLHHNLQPNVVTFGVLMDGLCKVGEL 240 (605)
Q Consensus 196 ------~~~~~~~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (605)
+..+.+.++++.+.++.. .|.+. .+-+......+.-.....|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 314 YVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccH
Confidence 333344444444433321 11111 011333333444445677889
Q ss_pred HHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCC---HHHHHHH-------------------------HHHHHhCCC
Q 036303 241 RAAGNFFVHMAKF--GVFPNIFVYNCLIDGHCKAGN---LFEAMSL-------------------------CSEMEKFEI 290 (605)
Q Consensus 241 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~-------------------------~~~~~~~~~ 290 (605)
++|.++++..... ....+......++..|.+.+. ..++..+ +...... .
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~ 471 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-M 471 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-C
Confidence 9999999888652 112344455567777777665 3333332 1112211 1
Q ss_pred CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 036303 291 SP--DVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFS 368 (605)
Q Consensus 291 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (605)
++ +...|..+..++.. +++++|...+.+..... |+......+...+...|++++|...++++... +|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 33 56677777777766 88999999888877663 55544444555567899999999999998765 34455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG 448 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (605)
.+...+.+.|++++|...+++.+... +.+...+..+.......|++++|...+++.++.. |+...+..++.++.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCC
Confidence 77888899999999999999999874 2233344444445556799999999999999874 56888999999999999
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 527 (605)
++++|+..+++.+... +.+...+..+..++...|++++|+..++++.+ ..|+ ...+..+..++...|++++|
T Consensus 624 ~~deA~~~l~~AL~l~-----Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 624 NVPAAVSDLRAALELE-----PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred CHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999874 55677888999999999999999999999998 5565 55888999999999999999
Q ss_pred HHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 528 MMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 528 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
...++++++ +.|+ ..+....+....+..+++.|.+.+++....+|...
T Consensus 697 ~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 697 QHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999998 5574 68888999999999999999999999999988866
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=1.4e-21 Score=199.69 Aligned_cols=256 Identities=14% Similarity=0.121 Sum_probs=154.9
Q ss_pred CCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 308 GQLEGAEGLLQKMYKEG-I-LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMG 385 (605)
Q Consensus 308 ~~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 385 (605)
+++++|...|+.....+ . +.....+..+...+...|++++|+..+++..+..+ .+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHH
Confidence 55666666666666543 1 12334555666666666777777777776666531 234456666666666777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q 036303 386 LYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTD 465 (605)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (605)
.|++++... +.+...+..+...+...|++++|...|++.++.. +.+...+..++.++.+.|++++|+..|++.+...
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 776666553 2345566666666667777777777777776654 4445566666666677777777777777666542
Q ss_pred CCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HH-------HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 466 GGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CT-------YTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 466 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
+.+...+..++.++...|++++|++.|+++.+ +.|+. .. +...+..+...|++++|.+.++++++.
T Consensus 464 ----P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 ----PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred ----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33455666666677777777777777777665 22321 01 111111222356777777777776653
Q ss_pred CCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 538 GIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 538 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
.| +..++..++.++.+.|++++|+.+++++.++.+.
T Consensus 538 --~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 538 --DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred --CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 34 3445666777777777777777777777666543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=8.8e-21 Score=193.89 Aligned_cols=433 Identities=12% Similarity=0.028 Sum_probs=307.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (605)
+...+..+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|+..++..++.. +.+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456678888999999999999998875 4577788889999999999999999999999874 3356788889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 036303 167 ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNF 246 (605)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 246 (605)
.|++++|+..|......+.. +......++..+.. ..+........... +++...+..+...+ ..........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhh
Confidence 99999999888776654221 11111112221111 22333333333332 33333333333322 21111111111
Q ss_pred HHHHHHCCCCCC-HhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 247 FVHMAKFGVFPN-IFVYNCLIDG---HCKAGNLFEAMSLCSEMEKFE--ISPDVFTYNILIKGLCGVGQLEGAEGLLQKM 320 (605)
Q Consensus 247 ~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (605)
+....+. .+. ...+..+... ....+++++|.+.|+.....+ .+.....+..+...+...|++++|+..+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 111 1111111111 123478999999999998754 1234566788888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 321 YKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV 400 (605)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 400 (605)
.... +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..|++.+... +.+..
T Consensus 358 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 8874 2346688888889999999999999999998874 3467889999999999999999999999999874 33566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC-CCCccHH-HHHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG-YCSPNHV-LYAA 478 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~-~~~~ 478 (605)
.+..+...+...|++++|+..+++.++.. +.+...+..++..+...|++++|++.|++++...+.. ....+.. .++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77788889999999999999999998864 5668889999999999999999999999988754321 0111111 1222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
.+..+...|++++|.++++++.+ +.|+.. .+..++.++...|++++|+..++++.+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22333446999999999999987 456554 7888999999999999999999999874
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.2e-20 Score=180.18 Aligned_cols=408 Identities=14% Similarity=0.051 Sum_probs=208.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHH
Q 036303 153 TVVIYTILIHGLCNENKMVEAESMFRSMRECGVV--PNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVL 230 (605)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 230 (605)
++.+.+.|...|.-.|++..+..+...+...... .-...|-.+.++|-..|++++|..+|.+..+.........+..+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 3444444445555555555555554444433110 01123444555555555555555555544443211112233344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 036303 231 MDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG----NLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG 306 (605)
Q Consensus 231 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (605)
++.+...|+++.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++....+.. +.|+..|..+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 455555555555555555554432 233334444444443332 2344444444443322 2344444444444433
Q ss_pred cCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcCH------HHHHHHHHH
Q 036303 307 VGQLEGAEGLLQKMY----KEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK---GVEPNV------VTFSSLIDG 373 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~ 373 (605)
. ++..++..+..+. ..+..+.+...|.+...+...|+++.|...|...... ...++. .+-..+..+
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 2 2222244443322 2233344555555555555556666666555555443 111122 112223444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036303 374 QCKAGNIDAAMGLYTEMVIKSLVPDV-VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISN 452 (605)
Q Consensus 374 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (605)
+-..++++.|.+.|..++.. .|+- ..|..++......++..+|...++.....+ ..++.++..++..+.+...+.-
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 44455555555666555554 2222 223333322223345556666666665543 4455555666666666666666
Q ss_pred HHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 036303 453 ALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY------------DGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLL 519 (605)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 519 (605)
|.+-|+.+.+... ..+|..+...|++.|.+ .+..++|+++|.+++. ..| |...-+.+.-+++
T Consensus 583 a~k~f~~i~~~~~---~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 583 AKKKFETILKKTS---TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred cccHHHHHHhhhc---cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 6666655555432 13555555566665542 2345677777777776 334 3445566667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 520 RAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
..|++.+|..+|.+..+.. .....+|..++.+|..+|+|-.|++.|+...+.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred hccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887643 235677888888888888888888888877765
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.3e-20 Score=191.63 Aligned_cols=329 Identities=10% Similarity=0.041 Sum_probs=158.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG 273 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (605)
.++..+.+.|++++|..+++..+... +-+...+..++.+....|+++.|...++.+.... |.+...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34444555555555555555555542 2233444444444555555555555555555542 233444455555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 274 NLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
++++|...++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 5555555555555432 223444455555555555555555555555443221 22222222 22445555555555555
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 036303 354 QMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKE----TLRLYKEMLEAK 429 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~ 429 (605)
.+......++......+...+...|++++|...++++.... +.+...+..+...+...|++++ |...++++++..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 55444322223333333444555555555555555555442 2234444445555555555543 455555555443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 036303 430 ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC 509 (605)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (605)
|.+..++..++..+...|++++|+..+++++... +.+...+..+..++...|++++|+..++++.+ ..|+..
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~ 352 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTS 352 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccch
Confidence 3344455555555555555555555555555432 22333444455555555555555555555554 233322
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 510 T-YTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 510 ~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
. +..+..++...|++++|...++++++
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 22233444455555555555555554
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.3e-21 Score=188.65 Aligned_cols=297 Identities=18% Similarity=0.167 Sum_probs=130.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHH
Q 036303 235 CKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD---VFTYNILIKGLCGVGQLE 311 (605)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 311 (605)
...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444432 12233444444444444555555544444443211110 123344444444455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 036303 312 GAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNV----VTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 312 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
+|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..++..+...|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555544432 223344444455555555555555555554443221111 12233344444455555555555
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (605)
+++.+.. +.+...+..+...+...|++++|..+++++.+.+......++..++.+|...|++++|...++++...
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---- 278 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---- 278 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 5544432 11233444444445555555555555555544321111233444445555555555555555554442
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcc
Q 036303 468 YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR---AKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
.|+...+..++..+.+.|++++|.++++++.+ ..|+..++..++..+.. .|+..+++..++++++.++.|+
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 23333334444555555555555555555544 34454444444443332 2345555555555554444433
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1e-19 Score=189.35 Aligned_cols=420 Identities=8% Similarity=0.002 Sum_probs=254.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 036303 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMD 197 (605)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 197 (605)
++....-.+....-.|+.++|++++....... +.+...+..+...+...|++++|..+|++..+..+. +...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44444445555666777777777777766521 334445666777777777777777777776665322 3445556666
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036303 198 GYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFE 277 (605)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (605)
.+...|++++|+..+++++... +.+.. +..+..++...|++++|...++++.+.. +.+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 6677777777777777776652 33444 6666666667777777777777776653 2344444555666666666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCH---HHHH
Q 036303 278 AMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGY-----CKEGDM---EKAL 349 (605)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~ 349 (605)
|+..++.... .|+.. .-+. .. ....++... ...+++ ++|+
T Consensus 169 Al~~l~~~~~---~p~~~---~~l~-------~~-------------------~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 169 ALGAIDDANL---TPAEK---RDLE-------AD-------------------AAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHHhCCC---CHHHH---HHHH-------HH-------------------HHHHHHHhhcccccChhHHHHHHHHHH
Confidence 7666655543 12210 0000 00 000001111 111122 5556
Q ss_pred HHHHHHhhC-CCCcCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 350 SVCSQMTEK-GVEPNVV-TF----SSLIDGQCKAGNIDAAMGLYTEMVIKSLV-PDVVVFTALIDGLSKDGNMKETLRLY 422 (605)
Q Consensus 350 ~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 422 (605)
..++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+...+.+ |+. ....+..+|...|++++|...|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 666665543 1111111 11 11122334557777777777777665421 221 1122455667777777777777
Q ss_pred HHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC-------CCCCcc---HHHHHHHHHHHHccCCH
Q 036303 423 KEMLEAKITP---SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG-------GYCSPN---HVLYAAIIQALCYDGQI 489 (605)
Q Consensus 423 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~---~~~~~~l~~~~~~~g~~ 489 (605)
+++.+..... .......++.++...|++++|+..++++....+. ....|+ ...+..++..+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 7766543111 1234455555667777777777777776654210 001233 23445677788889999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
++|++.++++.. ..|+ ...+..++..+...|++++|++.++++++ +.| +...+...+..+.+.|++++|...++
T Consensus 376 ~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 376 PQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999987 3454 55788888888899999999999999987 456 47788888889999999999999999
Q ss_pred HHHhcCCCCCCC
Q 036303 568 FLKESRIGSSET 579 (605)
Q Consensus 568 ~~~~~~~~~~~~ 579 (605)
++.+..|++..+
T Consensus 452 ~ll~~~Pd~~~~ 463 (765)
T PRK10049 452 DVVAREPQDPGV 463 (765)
T ss_pred HHHHhCCCCHHH
Confidence 999999987754
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.9e-19 Score=183.11 Aligned_cols=380 Identities=10% Similarity=0.014 Sum_probs=287.5
Q ss_pred HHHhcCChHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh
Q 036303 61 AFSEMGHIEEALWVYRKIEV-----LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDV 135 (605)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (605)
.+.++.+++.-.-+|...+. ..+......++..+.+.|++++|..+++......+. +...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence 45678888887777776531 122333455677888999999999999999887544 566667777778889999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 136 MKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
+.|...++++.+.. |.+...+..+...+...|++++|...+++.....+. +...+..++..+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999999874 346778888999999999999999999999886433 5667888899999999999999999988
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 036303 216 LHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVF 295 (605)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 295 (605)
.... +.+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|+..++...... +.+..
T Consensus 171 ~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 7653 2233333333 3477889999999999998776433444445556678888999999999999988764 44567
Q ss_pred hHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 036303 296 TYNILIKGLCGVGQLEG----AEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLI 371 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 371 (605)
.+..+...+...|++++ |...++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 77788888899999885 788888888764 3467788888888999999999999999988874 33566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 372 DGQCKAGNIDAAMGLYTEMVIKSLVPDV-VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRI 450 (605)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (605)
.++...|++++|...++++... .|+. ..+..+..++...|++++|...|++.++.. |+.. ...+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~-----------~~~~ 390 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHL-----------PQSF 390 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhc-----------hhhH
Confidence 8888999999999999888876 3333 334445667888899999999999888763 3221 2344
Q ss_pred HHHHHHHHHhhhc
Q 036303 451 SNALNFFLEKTDK 463 (605)
Q Consensus 451 ~~A~~~~~~~~~~ 463 (605)
++|...+.+....
T Consensus 391 ~ea~~~~~~~~~~ 403 (656)
T PRK15174 391 EEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666665554
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=4.9e-19 Score=184.27 Aligned_cols=430 Identities=13% Similarity=0.007 Sum_probs=291.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036303 82 PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILI 161 (605)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (605)
-+.......+.+....|+.++|++++.++.... +.+...+..+..++...|++++|..++++.++.. +.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 445555667778889999999999999998742 4456679999999999999999999999998873 44677788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 036303 162 HGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELR 241 (605)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (605)
.++...|++++|...++++.+..+. +.. +..+..++...|++++|+..++++.+.. +.+...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 9999999999999999999987443 555 8888999999999999999999999874 445666677888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHH
Q 036303 242 AAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQL---EGAEGLLQ 318 (605)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~ 318 (605)
.|...++.+.. .|+.. .-+ ....+........ .......+++ ++|+..++
T Consensus 168 ~Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r~~~--------------~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 168 PALGAIDDANL---TPAEK---RDL-------EADAAAELVRLSF--------------MPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHHhhc--------------ccccChhHHHHHHHHHHHHHH
Confidence 99998877664 23210 000 0000000000000 0000111122 55566666
Q ss_pred HHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 319 KMYKE-GILANVV-TY----NSLIDGYCKEGDMEKALSVCSQMTEKGVE-PNVVTFSSLIDGQCKAGNIDAAMGLYTEMV 391 (605)
Q Consensus 319 ~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 391 (605)
.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 65543 1112111 11 11122334556777777777777665422 221 22224566777777777777777766
Q ss_pred HCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHH
Q 036303 392 IKSLVP---DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI-----------TPS---VFTVSSLIHGLFKNGRISNAL 454 (605)
Q Consensus 392 ~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~ 454 (605)
...... .......+..++...|++++|..+++.+..... .|+ ......++..+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 542111 123344555566777777777777777766421 122 234556677788899999999
Q ss_pred HHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 455 NFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
+.++++.... +.+...+..++..+...|++++|++.++++.+ +.|+. ..+..++..+...|++++|...+++
T Consensus 380 ~~l~~al~~~-----P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 380 MRARELAYNA-----PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHhC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999988764 55677888888889999999999999999988 56764 4666666778889999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHH
Q 036303 534 MIKMGIVPDAVINQVMVRGY 553 (605)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~~~ 553 (605)
+++ ..|+......+.+.+
T Consensus 453 ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 453 VVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHH--hCCCCHHHHHHHHHH
Confidence 987 456655444444443
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.5e-20 Score=181.32 Aligned_cols=304 Identities=13% Similarity=0.065 Sum_probs=250.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN---VVTYNSLIDGYCK 341 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 341 (605)
....+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999865 34566888899999999999999999999987642222 2467888999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHH
Q 036303 342 EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV----VVFTALIDGLSKDGNMKE 417 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 417 (605)
.|+++.|..+|+++.+.. +++..++..++..+...|++++|.+.++.+...+..+.. ..+..++..+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998863 456788999999999999999999999999887533322 234567777889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 036303 418 TLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFS 497 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (605)
|...++++.+.. +.+...+..++..+.+.|++++|+++++++....+ .....++..++.+|...|++++|.+.++
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP----EYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh----hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999865 45567888899999999999999999999987531 1224567888999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh---cCChhHHHHHHHHHHhcCC
Q 036303 498 DMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQE---NGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 498 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 574 (605)
++.+ ..|+...+..++..+.+.|++++|...++++++ ..|+...+..+...+.. .|+.++|...++++.+..+
T Consensus 274 ~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 9998 567777778899999999999999999999987 46887777777766654 5689999999999987665
Q ss_pred CCCCC
Q 036303 575 GSSET 579 (605)
Q Consensus 575 ~~~~~ 579 (605)
...|.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 55544
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=9.4e-18 Score=170.89 Aligned_cols=455 Identities=11% Similarity=0.026 Sum_probs=281.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-VLPAI-QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.|..+.....-+....++|+++.|+..|+++. ..|+. .....++..+...|+.++|+..+++.... .+........+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llal 108 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASA 108 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHH
Confidence 44466666667777888899999999998873 33432 23337788888889999999999988721 11223334444
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADV 205 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 205 (605)
...+...|++++|+++++++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 6688888999999999999988853 35677777888888899999999999988875 34555554444444445666
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 206 NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEM 285 (605)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 285 (605)
.+|++.++++.+.. +.+...+..+.....+.|-...|.++...-. +..+-...... +.+.|.+..+..
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a 253 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhc
Confidence 66899999988874 4467777888888888888888887666533 22111111110 111222222111
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036303 286 EKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE-GI-LANVV----TYNSLIDGYCKEGDMEKALSVCSQMTEKG 359 (605)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 359 (605)
..+...- -. +.--.+.|+.-++.+... +. ++... ...-.+.++...++..++++.|+.+...+
T Consensus 254 ----~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 254 ----VLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred ----ccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 1111000 00 111234455555555542 11 22211 22234456778888999999999998877
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----
Q 036303 360 VEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-----VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI---- 430 (605)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---- 430 (605)
.+....+-..+..+|...+++++|..+|.++..... +++......|..++...+++++|..+++++.+...
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 665566778888899999999999999988876531 22333456778888888889999888888887311
Q ss_pred -------CCC--H-HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 431 -------TPS--V-FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 431 -------~~~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
.|+ - .....++..+.-.|++.+|.+.++++.... |-|...+..+...+...|++.+|++.++.+.
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-----P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-----PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 011 1 112233444555566666666666655542 4445555555555666666666666665544
Q ss_pred hCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 501 SDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 501 ~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
. +.|+.. +....+.++...|++.+|..+.....+
T Consensus 478 ~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 478 S--LAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred h--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4 344332 444455555555666666665555554
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=2.4e-17 Score=167.96 Aligned_cols=463 Identities=13% Similarity=0.042 Sum_probs=287.7
Q ss_pred hHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHH
Q 036303 12 KNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNP-SVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNAL 90 (605)
Q Consensus 12 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 90 (605)
..+...+...+. ..+.++.. .+...|+.+... .|.++ .++ .++..+...|+.++|+..+++...+.+...+..+
T Consensus 32 ~~~~~~y~~aii-~~r~Gd~~-~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 32 AMADTQYDSLII-RARAGDTA-PVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred cchhHHHHHHHH-HHhCCCHH-HHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 344445555554 35666666 777777776433 34443 344 8888899999999999999998643344444444
Q ss_pred --HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 91 --LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNEN 168 (605)
Q Consensus 91 --~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (605)
+..+...|++++|+++|+++.+..+. ++..+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 66888999999999999999998644 6778888889999999999999999999887 556555555555555567
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 036303 169 KMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFV 248 (605)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 248 (605)
+..+|++.++++.+..+. +...+..+..++.+.|-...|+++..+- |+..+-...... +.+.+.+..+
T Consensus 184 ~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr 251 (822)
T PRK14574 184 RNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVR 251 (822)
T ss_pred hHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHh
Confidence 776799999999997543 6777788889999999999999877652 332221111110 0111111111
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 249 HMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKF-EISPDV-FTY----NILIKGLCGVGQLEGAEGLLQKMYK 322 (605)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (605)
... .++..- . . +---.+.|+.-++.+... +..|.. ..| .-.+-++...++..+++..++.+..
T Consensus 252 ~a~----~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 252 MAV----LPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred hcc----cccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 110 000000 0 0 000122333333333221 001111 111 1122344455556666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 036303 323 EGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKG-----VEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-- 395 (605)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 395 (605)
.+.+....+-..+..+|...+++++|..+++.+.... .+++......|.-++...+++++|..+++.+.....
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 5544344455555666666666666666666554432 111222234555556666666666666666655211
Q ss_pred ---------CC--CHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 396 ---------VP--DVV-VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 396 ---------~~--~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
.| |-. .+..++..+...|+..+|.+.++++.... |-|......+...+...|.+.+|...++.....
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 12 211 23345666778888999999998887765 678888888888888889999998888776654
Q ss_pred cCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 036303 464 TDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTT 513 (605)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (605)
. +.+..+....+.++...|++++|.++.+.+.+ ..|+......
T Consensus 480 ~-----P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 480 A-----PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred C-----CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHH
Confidence 2 44456666777788888899999888888887 5566554333
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=2.4e-17 Score=159.35 Aligned_cols=538 Identities=14% Similarity=0.074 Sum_probs=369.2
Q ss_pred cHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036303 34 VCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMV 111 (605)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 111 (605)
.|..++..+-.. .|..+.+|.+|+..|-..|+.++++..+-.+ ..+.+...|..+.....+.|++++|.-.|.+++
T Consensus 157 eA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 555555544222 5668889999999999999999999987655 466778999999999999999999999999999
Q ss_pred HCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 036303 112 LCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTI----LIHGLCNENKMVEAESMFRSMREC-GVV 186 (605)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~-~~~ 186 (605)
+..++ +....-.-...|-+.|+...|...|.++.+..++.|..-+.. .+..+...++.+.|.+.++..... +-.
T Consensus 235 ~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 235 QANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred hcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 98644 555555566788899999999999999999854334333333 455566778889999999888763 223
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCC---------------------------CCCCcchHHHHHHHHHhcCC
Q 036303 187 PNLYTYNALMDGYCKVADVNRALEFYHEMLHHN---------------------------LQPNVVTFGVLMDGLCKVGE 239 (605)
Q Consensus 187 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~ 239 (605)
.+...++.++..+.+...++.+......+.... ..++... ..++-++.+...
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~ 392 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKE 392 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccc
Confidence 356678999999999999999999888877621 1122222 123334445555
Q ss_pred HHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 240 LRAAGNFFVHMAKFG--VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLL 317 (605)
Q Consensus 240 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 317 (605)
.+....+........ +.-+...|..+..+|...|++.+|+.+|..+.......+...|..+..+|...|.++.|...+
T Consensus 393 ~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y 472 (895)
T KOG2076|consen 393 RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFY 472 (895)
T ss_pred cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555555 333566788899999999999999999999998766666788999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 318 QKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTE--------KGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTE 389 (605)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 389 (605)
++++... +.+...-..|...+.+.|+.++|.+.+..+.. .+..|+..........+...|+.++-+.+-..
T Consensus 473 ~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 473 EKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999874 33556677788889999999999999998542 23455555566667788888998887666555
Q ss_pred HHHCC----------------------CCCCHhhHHHHHHHHHhcCCHHHHHHHHH------HHHHCCCCCCH--HHHHH
Q 036303 390 MVIKS----------------------LVPDVVVFTALIDGLSKDGNMKETLRLYK------EMLEAKITPSV--FTVSS 439 (605)
Q Consensus 390 ~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~~~~--~~~~~ 439 (605)
++... ..........+..+-.+.++......-.. -....++..+. ..+..
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 54321 01111222233333333333222111111 11112222222 24566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHH---HH-HHHHHHHHccCCHHHHHHHHHHHHhC-CC--CCCHH-HH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV---LY-AAIIQALCYDGQILKASKLFSDMRSD-NL--RPDNC-TY 511 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~p~~~-~~ 511 (605)
++.++.+.+++.+|+.+...+..... +..+.. .+ ...+.+....+++..|...++.|... +. .|... .|
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~---f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYI---FFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhh---hhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 77788999999999999998877532 122222 22 34556677889999999999998863 11 33323 44
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+...+.....++-.--.+++..+.......++......+..+..++.+..|+..+-++...+|+++..
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~ 776 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLI 776 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHH
Confidence 43444555555433333333333322211124455556777889999999999999999999986654
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=3.9e-16 Score=145.41 Aligned_cols=457 Identities=11% Similarity=0.026 Sum_probs=316.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 99 KFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFR 178 (605)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 178 (605)
+.+.|+-++.+..+. .+.+...| .++.+..-++.|..++++..+. ++.+..+|..-...--.+|+.+...+++.
T Consensus 391 ~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344455555555554 22233333 3445566778888888887775 56677778777777777888887777765
Q ss_pred HH----HHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 179 SM----RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQP--NVVTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 179 ~~----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
+- ...|+..+...|..=...+-+.|..-.+..+....+.-|+.. ...|+..-...|.+.+.++-|..+|...++
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 43 345777777778777777777888888888877777665432 245677777888888888888888888877
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036303 253 FGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTY 332 (605)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (605)
.- +.+...|......--..|..++...+|++....- +.....|......+-..|+...|..++..+.+.... +...|
T Consensus 545 vf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiw 621 (913)
T KOG0495|consen 545 VF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIW 621 (913)
T ss_pred hc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHH
Confidence 42 4455666666666666788888888888887753 344455666666777788999999988888877533 66778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 036303 333 NSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKD 412 (605)
Q Consensus 333 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (605)
...+..-.....+++|..+|.+.... .|+...|..-+...-..++.++|++++++.++. ++.-...|..+.+.+...
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHH
Confidence 88888888888899999999888775 456677776666667778889999998888876 233345777778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHH
Q 036303 413 GNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKA 492 (605)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 492 (605)
++.+.|...|..-.+. .|.....|..+...--+.|.+-.|..++++...+. +.+...|...+++-.+.|..+.|
T Consensus 699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-----Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-----PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-----CCcchhHHHHHHHHHHcCCHHHH
Confidence 8888888888776654 25556677777777778888888988888887764 56778888888888888998888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 493 SKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
..+..++++. .+.+...|..-+...-+.++-.+....+++ ..-|+.+...++..+....+++.|+++|+++.+.
T Consensus 773 ~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 773 ELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8888777762 222333454444444444443232222221 2335555666666666666666666666666666
Q ss_pred CCCCCCC
Q 036303 573 RIGSSET 579 (605)
Q Consensus 573 ~~~~~~~ 579 (605)
+|.....
T Consensus 847 d~d~GD~ 853 (913)
T KOG0495|consen 847 DPDNGDA 853 (913)
T ss_pred CCccchH
Confidence 6665544
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.5e-15 Score=136.24 Aligned_cols=469 Identities=12% Similarity=0.063 Sum_probs=354.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
+-..|...+.-=..++++..|..+|+.+ ....++..|...+.+-.++.....|..++++++..=+. -...|...+.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHH
Confidence 4456777777777889999999999988 35678889999999999999999999999999886322 22356666666
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 036303 129 CCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRA 208 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 208 (605)
--..|++..|.++|++..+- .|+..+|++.+..-.+.+.++.|..+++..+- +.|+..+|.-....-.+.|....+
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 67789999999999999876 89999999999999999999999999999887 468999999999999999999999
Q ss_pred HHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHH---
Q 036303 209 LEFYHEMLHH-NL-QPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN--IFVYNCLIDGHCKAGNLFEAMSL--- 281 (605)
Q Consensus 209 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--- 281 (605)
..+|....+. |- ..+...+...+..-.+...++.|.-+|+.++.. ++.+ ...|..+...--+-|+.....+.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 9999988765 21 112233444444445677889999999988875 2333 44555555554555665444332
Q ss_pred -----HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHHhcCCHH
Q 036303 282 -----CSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANV--VTYNSLID--------GYCKEGDME 346 (605)
Q Consensus 282 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~ 346 (605)
++.+.+.+ +.|-.+|--.+..-...|+.+...+++++.+..- +|-. ..|...|- .-....+.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33444433 5677788888888888899999999999998863 3321 12222221 124578899
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 347 KALSVCSQMTEKGVEPNVVTFSSLIDGQ----CKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLY 422 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 422 (605)
.+.++|+..++. +|....||..+--.| .++.++..|.+++...+.. .|...+|...+..-.+.++++....+|
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999985 566666766554444 4578999999999988744 788899999999989999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 423 KEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
++.++-+ |.+..+|...+..-...|+.+.|..+|+-+++... ..-....|.+.|..-...|.++.|..+++++++.
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999987 67788899988888899999999999999887532 2233456777778788899999999999999984
Q ss_pred CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 036303 503 NLRPDNCTYTTMLRGLL-----RAK-----------RMLDVMMLLADMIK 536 (605)
Q Consensus 503 ~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 536 (605)
. +-..+|-..+.--. ..+ ....|..+|+++..
T Consensus 537 t--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 537 T--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred c--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 3 33345555544322 223 46678888888764
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=5.1e-18 Score=151.04 Aligned_cols=477 Identities=14% Similarity=0.090 Sum_probs=314.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc---CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HhHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI---EVLPAI-QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADV----VTYGVL 125 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l 125 (605)
++..|+.-|..+..+.+|+..|+-+ ...|+. ..-..+...+.+..++.+|+.+|+-.+..-+..+- .+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 4566777788888888888888765 222332 12234566777888888998888877765322222 245555
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH--------HHHHH
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTY--------NALMD 197 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--------~~l~~ 197 (605)
...+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+..-..||..-| ..|+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 56677889999999999888876 567665555666777788888888888888765433333222 22222
Q ss_pred HHhccCC-----------hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036303 198 GYCKVAD-----------VNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLI 266 (605)
Q Consensus 198 ~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 266 (605)
-..++.. -++++-.-.+++.--+.|+- .. | .+-..+.++.-.-. +.-...-..-.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f---a~--------g-~dwcle~lk~s~~~--~la~dlei~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF---AA--------G-CDWCLESLKASQHA--ELAIDLEINKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch---hc--------c-cHHHHHHHHHhhhh--hhhhhhhhhHH
Confidence 2222111 11111111111111111111 00 0 01111111111000 00000111123
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG--VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD 344 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (605)
.-|.+.|+++.|+++++-..+.+.+.-+..-+.+-..+.- -.++.+|..+-+.....+ .-+......-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3578899999999999988775433333333333333332 235777777776665543 2344444444444556899
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (605)
+++|...|++.+..+..- ......+.-.+...|++++|++.|-.+... +..+...+..+...|....+...|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998874322 223333455677899999999999877543 234777888889999999999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 036303 425 MLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNL 504 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (605)
.... ++.|+.++..|...|-+.|+-.+|.+.+-+...- ++-+..+..-+...|....-+++|+.+|+++.- +
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-----fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-----FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-----cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 8764 5788999999999999999999998887655443 577788888888889999999999999999876 8
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 036303 505 RPDNCTYTTMLRGLL-RAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGD 558 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 558 (605)
.|+..-|..++..|. +.|++++|..++++.-+ .++.|..++..|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 999999999888765 68999999999998764 466789999999999988884
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.1e-15 Score=137.17 Aligned_cols=479 Identities=10% Similarity=0.051 Sum_probs=363.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 81 LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
..+...|...++.-..++++..|..+|++++... ..+...|...+.+-.+...+..|..++++....= |.-...|.-.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY 147 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHH
Confidence 3566778888888888999999999999999875 4478889999999999999999999999998862 3233456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 036303 161 IHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (605)
+.+--..|++..|.++|+.-.+ ..|+..+|.+.|..-.+.+.++.|..+|++.+-. .|++.+|...+..-.+.|..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 6666778999999999999887 4789999999999999999999999999999874 69999999999999999999
Q ss_pred HHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 036303 241 RAAGNFFVHMAKF-G-VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD--VFTYNILIKGLCGVGQLEGAEGL 316 (605)
Q Consensus 241 ~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 316 (605)
..+..++..+.+. | -..+...+.+....-.++..++.|.-+|+-...+= +.+ ...|..+...--+.|+.......
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 9999999988763 1 11234456666666677888999999998887742 222 23444444433445654433322
Q ss_pred --------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH--HHHHHHHHH--------HHhcC
Q 036303 317 --------LQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNV--VTFSSLIDG--------QCKAG 378 (605)
Q Consensus 317 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~ 378 (605)
++.+.+.+ +.|-.+|-..+......|+.+...++|++++.. ++|-. ..|...+-. -....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444 558888999999989999999999999999987 44422 122222211 13468
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGL----SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNAL 454 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 454 (605)
+.+.+.++|+..++. ++....||..+--.| .++.+...|.+++...+. ..|...++...+..-.+.++++.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHH
Confidence 999999999999884 444555666554444 467889999999998874 5789999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 455 NFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
.+|++.+.-. +.+-.+|......-...|+.+.|..+|+-+++.....- ...|...++--...|.+++|..++++
T Consensus 458 kLYEkfle~~-----Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 458 KLYEKFLEFS-----PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHhcC-----hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 9999999864 56678888888777889999999999999987432111 22566666666688999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHhcCCCCCC
Q 036303 534 MIKMGIVPDAVINQVMVRGYQ-----ENG-----------DLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+++. .+...+|...+..-. +.| +...|+.+|+++...-.+..+
T Consensus 533 lL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 533 LLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred HHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 9973 455557776665443 445 677899999988765444443
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=4.6e-15 Score=138.43 Aligned_cols=482 Identities=12% Similarity=0.038 Sum_probs=390.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHh
Q 036303 91 LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMI----DKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 166 (605)
..+|.+..-|+.|..+++...+. ++.+..+|......--.+|+.+...+++.+-+ ..|+..+...|..=...+-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34556667899999999999886 77799999999888889999999999887654 44888899999988899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 036303 167 ENKMVEAESMFRSMRECGVVPN--LYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAG 244 (605)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (605)
.|..-.+..+....+..|+.-. ..||..-...|.+.+.++-|..+|...++. ++-+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 9999999999999888876522 358888899999999999999999998876 3556667777777777789999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 245 NFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEG 324 (605)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (605)
.++.++.... +.....|-.....+-..|+...|..++.+..+.. +.+...|...+.......+++.|..+|.+....
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 9999998863 4555666667777888999999999999998865 346677888888889999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 036303 325 ILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTA 404 (605)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 404 (605)
.|+...|..-+..-.-.++.++|.+++++.++. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. .+..+..|..
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 456677766666667788999999999999886 3334567888889999999999999999877665 3445667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (605)
+...-.+.|+.-.|..+++...-.+ |.+...|...+.+-.+.|..+.|..+..++++. ++.+...|..-|....
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-----cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-----CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccchhHHHHHHhcc
Confidence 7777788899999999999998876 678889999999999999999999999999987 4666677887777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 563 (605)
+.++-..++..+++. .-|+.....+...+....++++|.+.|+++.+ +.|| ..+|..+...+.+.|.-++-.
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHH
Confidence 777766666666654 34777777888888889999999999999998 4454 777888888999999999999
Q ss_pred HHHHHHHhcCCCCCCCCccchhhhhhcccccccc
Q 036303 564 RCSEFLKESRIGSSETEGHTTRSFLGHLKPTVYK 597 (605)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (605)
.++++.....|...+ .-.++.+..+++..+
T Consensus 872 ev~~~c~~~EP~hG~----~W~avSK~i~n~~~t 901 (913)
T KOG0495|consen 872 EVLKKCETAEPTHGE----LWQAVSKDIKNWRKT 901 (913)
T ss_pred HHHHHHhccCCCCCc----HHHHHhhhHHhccCC
Confidence 999999887765443 334444444444433
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=8e-15 Score=142.23 Aligned_cols=527 Identities=13% Similarity=0.060 Sum_probs=361.6
Q ss_pred CCHHhHH--HHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 50 FNPSVFS--TLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 50 ~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.++.+-. ..+....-.|++++|.+++.++ ..+.+..+|..|...|-++|+.+++...+-.+...++. |...|..+
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~l 213 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRL 213 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHH
Confidence 3454443 3344455569999999999998 57778899999999999999999999888777776544 77899999
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH----HHHHHHhc
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN----ALMDGYCK 201 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~ 201 (605)
.....+.|+++.|.-.|.++++.. +++....-.-+..|-+.|+...|...|.++....++.|..-.. .++..+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 4455555567788999999999999999999875422322222 34556667
Q ss_pred cCChHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------------
Q 036303 202 VADVNRALEFYHEMLHH-NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFG-------------------------- 254 (605)
Q Consensus 202 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------------- 254 (605)
.++.+.|++.++..... +-..+...++.++..+.+...++.+...........
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 77779999999888773 224466778888899999999999988877765511
Q ss_pred -CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036303 255 -VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE--ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVT 331 (605)
Q Consensus 255 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 331 (605)
..++..++ .++-++...+..+....+...+.... +.-+...|.-+..++...|++.+|+.++..+......-+...
T Consensus 373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 11222231 12223333344444444444444444 333456788899999999999999999999998766667889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHhhHH
Q 036303 332 YNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVI--------KSLVPDVVVFT 403 (605)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~ 403 (605)
|-.+..+|...|.++.|...|+.++... +.+...-..|...+.+.|+.++|.+.+..+.. .+..|+.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 9999999999999999999999999874 34666777888999999999999999988552 23345555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAK----------------------ITPSVFTVSSLIHGLFKNGRISNALNFFLEKT 461 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (605)
.....+...|+.++-+.+...|+... .+-.......+..+-.+.++............
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 66677788888887666555544311 11111222233333333333222222111110
Q ss_pred hc--cCCCCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHH---HHH-HHHHHHHhcCCHHHHHHHHH
Q 036303 462 DK--TDGGYCSPNH--VLYAAIIQALCYDGQILKASKLFSDMRSDNL-RPDNC---TYT-TMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 462 ~~--~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~~-~l~~~~~~~g~~~~A~~~~~ 532 (605)
.. ....++.-+. ..+.-++.++.+.+++++|..+...+.+... .-+.. .+. ..+.++...+++..|...+.
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00 0000111111 2234556678899999999999999887422 11222 233 34455668999999999999
Q ss_pred HHHHC-CC--Ccc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 533 DMIKM-GI--VPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 533 ~~~~~-~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
.|+.. +. .|. ...|+.......+.|+-..-.+.+..+...+|.++++.
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l 742 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPL 742 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcce
Confidence 99853 22 232 44555566677788887777888888888888775543
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=7.9e-17 Score=143.56 Aligned_cols=460 Identities=14% Similarity=0.120 Sum_probs=305.9
Q ss_pred HHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-CCC------CHHHHHHHHHHHHhcCChhHHHHHH
Q 036303 35 CYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-VLP------AIQACNALLNGLIKKGKFDSVWEFY 107 (605)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~------~~~~~~~l~~~~~~~~~~~~A~~~~ 107 (605)
+...|+.+.....++.....-..+...+.+..++.+|+++|+-.. .-| .+...+.+...+++.|+++.|+..|
T Consensus 220 alntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsf 299 (840)
T KOG2003|consen 220 ALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSF 299 (840)
T ss_pred HhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhH
Confidence 344455555556666555555677788999999999999998652 222 2455677778889999999999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHhcCCH--------H
Q 036303 108 EEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIY--------TILIHGLCNENKM--------V 171 (605)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~--------~ 171 (605)
+..... .|+..+-..|+-++...|+.++..+.|.+|+.....+|..-| ..|+.--.+...+ .
T Consensus 300 dh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka 377 (840)
T KOG2003|consen 300 DHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKA 377 (840)
T ss_pred HHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhh
Confidence 999886 577777666777777889999999999999875333322211 1222222211111 1
Q ss_pred HHHHHHH---HHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 036303 172 EAESMFR---SMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFV 248 (605)
Q Consensus 172 ~a~~~~~---~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 248 (605)
.|.+..- +++.--+.|+-. --.+-+++.++.-... +.-...-..-...+.+.|+++.|.++++
T Consensus 378 ~aek~i~ta~kiiapvi~~~fa------------~g~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 378 DAEKAIITAAKIIAPVIAPDFA------------AGCDWCLESLKASQHA--ELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hHHHHHHHHHHHhccccccchh------------cccHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1222111 111111111100 0112223333222211 1111111122345778999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036303 249 HMAKFGVFPNIFVYNCLIDGHCK--AGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGIL 326 (605)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 326 (605)
-..+..-......-+.|...+.- -.++..|...-+.....+ .-+......-.......|++++|...+++....+-.
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 88775433333333333333222 346777777776665432 122222222223334579999999999999876322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036303 327 ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALI 406 (605)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 406 (605)
-....| .+.-.+-..|++++|++.|-++... +..+..+...+...|....+...|++++.+.... ++.|+..++.|.
T Consensus 523 c~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 112222 2334567889999999999887654 2347788888999999999999999999888765 567899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH-c
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC-Y 485 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 485 (605)
..|-+.|+-..|.+.+-+.-.. ++.+..+...|...|....-+++|+.+|+++.- +.|+..-|..++..|. +
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal------iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL------IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh------cCccHHHHHHHHHHHHHh
Confidence 9999999999998876655443 477899999999999999999999999998865 5899999987776554 7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 486 DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (605)
.|++++|.++++...+. ++.|..++.-|++.|...|
T Consensus 673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 89999999999998873 5667778888898887665
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.9e-14 Score=127.68 Aligned_cols=422 Identities=16% Similarity=0.206 Sum_probs=276.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH--HHccCChhHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 95 IKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC--CCGQGDVMKA-LNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV 171 (605)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (605)
+.+|....+.-+|++|...|++.+...-..|++. |....++.-| .+.|-.|...| +.+..+| +.|.+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence 4556666777777777777666666555555433 2222232211 12222333332 1122222 234333
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 172 EAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMA 251 (605)
Q Consensus 172 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (605)
+ -+|+... -+..++..||.+.++-...+.|.++|++......+.+..+|+.++.+-. +....++..+|.
T Consensus 197 d--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMi 265 (625)
T KOG4422|consen 197 D--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMI 265 (625)
T ss_pred H--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHH
Confidence 2 2233222 2778999999999999999999999999887766788888988887643 333378889999
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHC---
Q 036303 252 KFGVFPNIFVYNCLIDGHCKAGNLFEA----MSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEG-AEGLLQKMYKE--- 323 (605)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~--- 323 (605)
...+.||..++|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++...
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 888999999999999999999988765 5677888999999999999999999988887644 44444444431
Q ss_pred -CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 324 -GI----LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKG----VEPN---VVTFSSLIDGQCKAGNIDAAMGLYTEMV 391 (605)
Q Consensus 324 -~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 391 (605)
.+ +-|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.++
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12 2244556677788888889888888776665431 2233 2345667777788888999999999999
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHH
Q 036303 392 IKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG-RI--------SN-----ALNFF 457 (605)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~ 457 (605)
-.-.-|+..+...++++..-.|.++-.-++|.+++..|..........+...+++.. +. .. |..++
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 887788888999999999999999999999999988775555555444444444332 11 00 11111
Q ss_pred ---HHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 458 ---LEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNL-R---PDNCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 458 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---p~~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
+....+... ..-.....+.++-.+.+.|+.++|.+++.-+.+.+. - |.......+++...+.++...|+..
T Consensus 506 e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 111111110 123344556666667788888888888877755321 2 2333344566666677788888888
Q ss_pred HHHHHHCC
Q 036303 531 LADMIKMG 538 (605)
Q Consensus 531 ~~~~~~~~ 538 (605)
++-|....
T Consensus 584 lQ~a~~~n 591 (625)
T KOG4422|consen 584 LQLASAFN 591 (625)
T ss_pred HHHHHHcC
Confidence 87776543
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.1e-13 Score=122.84 Aligned_cols=428 Identities=14% Similarity=0.140 Sum_probs=230.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcC---CCCCHHHHHHHHHH--HHhcCChhHH-HHHHHHHHHCCC---------
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIE---VLPAIQACNALLNG--LIKKGKFDSV-WEFYEEMVLCGL--------- 115 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~--~~~~~~~~~A-~~~~~~~~~~~~--------- 115 (605)
+...=+.|+... .+|.+.++.-+|+.+. ++.+......+++. |....+..-| ++.|-.|...|-
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 333445565544 4589999999999883 44455555555433 3333332222 233334433321
Q ss_pred ----------CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 116 ----------VADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGV 185 (605)
Q Consensus 116 ----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (605)
+-...++..+|.++++--..++|.+++++-.....+.+..+||.+|.+-.-... .+++.+|.....
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 224456666666666666666666666666555455566666666654332221 456666666666
Q ss_pred CCCcccHHHHHHHHhccCChHH----HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCC-
Q 036303 186 VPNLYTYNALMDGYCKVADVNR----ALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA-AGNFFVHMAK----FGV- 255 (605)
Q Consensus 186 ~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~- 255 (605)
.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++.. ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 6666666666666666665543 34555666666666666666666666666555533 3333333322 111
Q ss_pred ---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 256 ---FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE----ISPDV---FTYNILIKGLCGVGQLEGAEGLLQKMYKEGI 325 (605)
Q Consensus 256 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 325 (605)
+.+...|...+..|....+.+-|.++-.-+.... +.|+. .-|..+....++....+.-...++.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 1233344445555555555555555544433211 11221 1233444445555555555666666655544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hH
Q 036303 326 LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV---VF 402 (605)
Q Consensus 326 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 402 (605)
.|+..+...++++....+.++-.-+++..+...|...+.... .+++..+....+.|+.. -+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHH
Confidence 555555556666555566666666666555554432222111 11222222222223211 12
Q ss_pred HHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRL-YKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQ 481 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 481 (605)
.....-|+. ++.++.+. -.++.+. ..+...++.++-.+.+.|+.++|.+++.-..+........|...+..-++.
T Consensus 494 ~~~~ak~aa--d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 494 QVAFAKCAA--DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHH--HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 222211111 12222221 1223333 455667788888889999999999999998776555444555555566777
Q ss_pred HHHccCCHHHHHHHHHHHHhCC
Q 036303 482 ALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
.-.+.+.+..|...++-|...+
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC
Confidence 7778888999999999887644
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=8.9e-15 Score=140.47 Aligned_cols=286 Identities=10% Similarity=0.057 Sum_probs=203.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 036303 272 AGNLFEAMSLCSEMEKFEISPDVFT-YNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTY--NSLIDGYCKEGDMEKA 348 (605)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a 348 (605)
.|+++.|.+.+....+.. +.+.. +.....+..+.|+++.|...+.++.+.. |+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 577887777776655432 12222 3233344467788888888888877653 343222 2335667778888888
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-------hHHHHHHHHHhcCCHHHHHHH
Q 036303 349 LSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV-------VFTALIDGLSKDGNMKETLRL 421 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~ 421 (605)
...++++.+.. +.+......+...|.+.|++++|.+++..+.+....++.. .|..++.......+.+....+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887775 3366777777888888888888888888888765432221 222333333344455666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 422 YKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
++.+.+. .+.++.....+...+...|+.++|.+.+++..+. ++++.. .++.+....++++++.+..++..+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHH--HHHHhhccCCChHHHHHHHHHHHh
Confidence 6665443 2567888889999999999999999999998874 455533 234444566999999999999987
Q ss_pred CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 502 DNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 502 ~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..|+. ..+..+...|.+.|++++|.+.|+++++ ..|+...+..++.++.+.|+.++|..++++...+-.+
T Consensus 323 --~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 323 --QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 45554 4677888999999999999999999998 5789888889999999999999999999999876443
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.5e-13 Score=118.99 Aligned_cols=330 Identities=12% Similarity=0.050 Sum_probs=193.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHH--
Q 036303 151 EPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFG-- 228 (605)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 228 (605)
..|...+-....++.+.|....|++.|...... -+..|.+.+....-..+.+ ....+.. +.+.+.....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e----~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIE----ILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHH----HHHHHHh-cCcccchHHHHH
Confidence 446666566666677788888888888877764 2334444433322222222 2222221 1222221111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHh
Q 036303 229 VLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEI--SPDVFTYNILIKGLCG 306 (605)
Q Consensus 229 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 306 (605)
-+..++....+.+++.+-.......|++.+...-+....+.....++++|+.+|+++.+... -.|..+|+.++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 23344555556777777777777777766666666666666777788888888888877531 01344555444 222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 307 VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGL 386 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 386 (605)
..+ ..+.++.+-...--+.-+.|...+.+.|.-.++.++|...|++.++.++. ....|+.+..-|...++...|++-
T Consensus 310 ~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 221 11122222111111223456666677777777777777777777776422 445566666667777777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 387 YTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
|+.+++.+ +.|...|-.+.++|.-.+...-|+-.|++..+.. |.|...|.+|+.+|.+.++.++|++.|..+..-.
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-- 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-- 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--
Confidence 77777654 3366677777777777777777777777776654 5566667777777777777777777776666543
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+...+..++..|-+.++..+|.+.|++-++
T Consensus 463 ---dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 ---DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ---ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23445566666666666666666666666554
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.8e-14 Score=127.97 Aligned_cols=220 Identities=13% Similarity=0.088 Sum_probs=138.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036303 340 CKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETL 419 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (605)
.-.|+.-.|..-|+..+.....++ ..|..+...|....+.++.+..|......+ +.++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 345666667777777766643322 225566666777777777777777776654 335556666666666667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 420 RLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
.=|++.+..+ +.+...+..+..+..+.++++++...|++..++. +..+..|+.....+..+++++.|.+.|+.+
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-----P~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-----PNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 7777777654 4455566666666667777777777777777663 445666666777777777777777777777
Q ss_pred HhCCCCCC-------HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 500 RSDNLRPD-------NC--TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 500 ~~~~~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
++ +.|+ .. +-..++..- -.+++..|..++.++++ +.| ....+..|+..-.+.|+.++|+.+|++.
T Consensus 489 i~--LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 489 IE--LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred Hh--hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66 3333 11 111111111 23677777777777776 445 3556677777777777777777777766
Q ss_pred Hhc
Q 036303 570 KES 572 (605)
Q Consensus 570 ~~~ 572 (605)
..+
T Consensus 564 a~l 566 (606)
T KOG0547|consen 564 AQL 566 (606)
T ss_pred HHH
Confidence 554
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=2.7e-14 Score=138.07 Aligned_cols=291 Identities=11% Similarity=0.044 Sum_probs=199.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 270 CKAGNLFEAMSLCSEMEKFEISPDV-FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKA 348 (605)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (605)
...|+++.|.+.+....+.. |+. ..+-....+....|+++.|...+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 45788888888887776643 332 333444566677788888888888876653222223334446677778888888
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----HHHHHHhcCCHHHHHHHHHH
Q 036303 349 LSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTA----LIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~ 424 (605)
...++.+.+.. |.+...+..+...+...|++++|.+.+..+.+.+.. +...+.. ........+..+.+...+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888775 336667777888888888888888888888877543 2222211 11111222333333445555
Q ss_pred HHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH---HHHHHHHHHccCCHHHHHHHHHH
Q 036303 425 MLEAKI---TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL---YAAIIQALCYDGQILKASKLFSD 498 (605)
Q Consensus 425 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 498 (605)
+.+... +.+...+..++..+...|+.++|.+.+++.++.. |+... ...........++.+.+.+.+++
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC------CCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 544321 2477888888899999999999999999999864 23221 11122223345788899999999
Q ss_pred HHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 499 MRSDNLRPDN---CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 499 ~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
..+ ..|+. .....+.+.|.+.|++++|.+.|++.......|+..++.+++..+.+.|+.++|.++|++....
T Consensus 325 ~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 325 QAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887 44544 4566889999999999999999996444446788888889999999999999999999987543
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-13 Score=127.00 Aligned_cols=268 Identities=9% Similarity=0.032 Sum_probs=125.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 036303 299 ILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG 378 (605)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (605)
...+.+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .|..+.+|..+.-.|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 33444444455555555555544442 223333333334444444444444444444443 2224445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFL 458 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (605)
+.++|.+.|.+...... .-...|..+...|+..|.-++|+..+..+.+.- +........++.-|.+.+..+-|.++|.
T Consensus 327 k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 55555555554443321 122344445555555555555555554444331 1122222233334444555555555555
Q ss_pred HhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 459 EKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD--NLRP----DNCTYTTMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~ 532 (605)
++... .+.|+..++-++......+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+++++|+..++
T Consensus 405 ~A~ai-----~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 405 QALAI-----APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHhc-----CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 55443 1334444444444444455555555555554420 0000 11235555555555555555555555
Q ss_pred HHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 533 DMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 533 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+.+... +.+..++..++-+|...|+.+.|...|.+++.++|.+
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 555421 1245555555555555555555555555555555554
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=3.3e-17 Score=150.50 Aligned_cols=261 Identities=16% Similarity=0.129 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 036303 299 ILIKGLCGVGQLEGAEGLLQKMYKEG-ILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA 377 (605)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (605)
.+...+.+.|++++|+++++...... .+.|...|..+.......++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677778888888888886554443 2334455556666777788888999999888876533 55566667766 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAK-ITPSVFTVSSLIHGLFKNGRISNALNF 456 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (605)
+++++|.+++....+. .+++..+..++..+...++++++..+++.+.... .+.+...+..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999888877655 3566677778888889999999999999877542 345677888888999999999999999
Q ss_pred HHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 457 FLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
++++++.. +.|......++..+...|+.+++.++++...+.. +.|+..+..+..++...|++++|...+++..+
T Consensus 169 ~~~al~~~-----P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 169 YRKALELD-----PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHH------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHcC-----CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999873 4457778889999999999999999988887742 44556788899999999999999999999887
Q ss_pred CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 537 MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 537 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
..| |+.+...+++++...|+.++|.++.+++.+
T Consensus 243 --~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 --LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HSTT-HHHHHHHHHHHT-----------------
T ss_pred --cccccccccccccccccccccccccccccccccc
Confidence 345 788999999999999999999999888765
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=1.9e-11 Score=114.60 Aligned_cols=507 Identities=13% Similarity=0.144 Sum_probs=326.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI----EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLI 126 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 126 (605)
-|.+|........++|++..-+..|+.. +...-...|...+......+-++-+..+|++.++. ++..-+-.+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 4678888999999999999999999876 33334567888888888899999999999999986 444577778
Q ss_pred HHHHccCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCcccHHHHHH
Q 036303 127 DCCCGQGDVMKALNLFDEMIDKG------IEPTVVIYTILIHGLCNENKMV---EAESMFRSMRECGVVPNLYTYNALMD 197 (605)
Q Consensus 127 ~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~ 197 (605)
..+++.+++++|.+.+..++... .+.+-..|..+-....+.-+.- ....+++.+...-..---..|..|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 88999999999999999987541 1223445666555555543322 23345555544311111346899999
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHCC-
Q 036303 198 GYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGE----------------------LRAAGNFFVHMAKFG- 254 (605)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~- 254 (605)
.|.+.|.+++|.++|++.+.. ..+..-|..+...|+.-.. ++-...-|+.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999998875 3345555555555543211 122222233332211
Q ss_pred ----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 255 ----------VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD------VFTYNILIKGLCGVGQLEGAEGLLQ 318 (605)
Q Consensus 255 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~ 318 (605)
-+.+...|...+. ...|+..+....+.+..+. +.|. ...|..+...|-..|+.+.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1122223322222 3356777778888877653 2222 2457888889999999999999999
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----------c------CHHHHHHHHHHHHhcC
Q 036303 319 KMYKEGILAN---VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVE-----------P------NVVTFSSLIDGQCKAG 378 (605)
Q Consensus 319 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~ 378 (605)
+..+...+-- ..+|..-...-.+..+++.|.++++.+...--. + +...|...+..--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9887654322 234555556667788899999998887653111 1 2334555566666678
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHH
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV-FTVSSLIHGLFK---NGRISNAL 454 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~ 454 (605)
-++....+|++++...+. ++.........+....-++++.++|++-+..-..|+. ..|+..+.-+.+ ...++.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 888888899988876543 3333333333345566678888888877665434443 356665555433 23788899
Q ss_pred HHHHHhhhccCCCCCCccHHHHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 036303 455 NFFLEKTDKTDGGYCSPNHVLYAAIIQA--LCYDGQILKASKLFSDMRSDNLRPDN--CTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
.+|+++++. ++|...-+-.++.+ --+.|-...|+.+++++... +++.. ..|+..+.-....=-+.....+
T Consensus 571 dLFEqaL~~-----Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 571 DLFEQALDG-----CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 999998873 45554332223222 22457778888899887652 44433 2677666644443334566778
Q ss_pred HHHHHHCCCCccHH---HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 531 LADMIKMGIVPDAV---INQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 531 ~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
++++++. -|+.. .....++.=.+.|..+.|+.++...-+.-++
T Consensus 645 YekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 645 YEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 8888863 44432 3345566677888888888888777766443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.8e-12 Score=116.60 Aligned_cols=380 Identities=9% Similarity=0.067 Sum_probs=271.4
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--HHH
Q 036303 188 NLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVY--NCL 265 (605)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 265 (605)
|...+-...-.+.+.|....|++.+...+.. .|..-..|..|.... .+.+.+ ...... .+.+...+ -.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHHHHHH
Confidence 4444444445566788899999999888764 233333444333332 233222 222221 12222111 224
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 036303 266 IDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGIL--ANVVTYNSLIDGYCKEG 343 (605)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 343 (605)
..++....+.+++..-.......|++.....-+....+.....++++|+.+|+++.+.++- .|..+|..++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 4566667788899988888888887666666566666677889999999999999987421 3567777766 33333
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 344 DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYK 423 (605)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (605)
+.. +..+..-...--+--+.|...+.+.|.-.++.+.|...|++.++.+ +.....|+.+.+-|....+...|+..++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 221 1122111111012234566778888899999999999999999885 2245577778888999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 036303 424 EMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
.+++.+ |.|...|..|+.+|.-.+.+.=|+-+|+++..-. +.|...|.+++.+|.+.++.++|++-|+++...|
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-----PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-----PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 999987 7789999999999999999999999999998853 5668999999999999999999999999999854
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 504 LRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM----G-IVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 504 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
..+...+..|...|.+.++.++|.+.+++.++. | +.| ...+...|+.-+.+.+++++|..+......-++.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e-- 539 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE-- 539 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch--
Confidence 235678999999999999999999999988752 3 233 3455556888899999999999887777665333
Q ss_pred CCCccchhhhhhcccc
Q 036303 578 ETEGHTTRSFLGHLKP 593 (605)
Q Consensus 578 ~~~~~~~~~~~~~~~~ 593 (605)
-....++++.++.
T Consensus 540 ---~eeak~LlReir~ 552 (559)
T KOG1155|consen 540 ---CEEAKALLREIRK 552 (559)
T ss_pred ---HHHHHHHHHHHHH
Confidence 2344555555443
No 45
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=9.2e-13 Score=114.26 Aligned_cols=223 Identities=13% Similarity=0.136 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-------CHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDG-------NMKE 417 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~ 417 (605)
-+.|++++-.+... - +..-..++..|.+.++..+|..+.+++... ++.-|..-.-.++..| ..+-
T Consensus 270 gEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred CccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 35566655555443 1 122234455566777777777766655322 2222211111222222 2334
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 036303 418 TLRLYKEMLEAKITPS-VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (605)
|...|+-.-+.+..-| ..--.++..++.-..++++.+.++..+..-. ..|...--.+..++...|++.+|+++|
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-----~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-----TNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 5555544333222111 1112233444444557888888887766543 333333346788888999999999999
Q ss_pred HHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 497 SDMRSDNLRPDNCTYT-TMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 497 ~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
-++....++ |..+|. .|.++|.+.++++-|+.++ ++..-+.+ -..+..++..|.+++.+--|.+.|+.+..++|
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 877653333 444554 4556777889998887654 44333333 33455678889999999999999999999999
Q ss_pred CCCCCCccch
Q 036303 575 GSSETEGHTT 584 (605)
Q Consensus 575 ~~~~~~~~~~ 584 (605)
...-|.....
T Consensus 493 ~pEnWeGKRG 502 (557)
T KOG3785|consen 493 TPENWEGKRG 502 (557)
T ss_pred CccccCCccc
Confidence 9888887654
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.1e-13 Score=123.23 Aligned_cols=421 Identities=13% Similarity=0.097 Sum_probs=266.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLCGLVAD-VVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPT-VVIYTILIHGL 164 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 164 (605)
+...+.-+.++|++++|++.|...+.. .|+ +..|.....+|...|+|+++.+.-.+.++. .|+ +.++..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344566788899999999999999986 566 778888999999999999999999998887 444 44677777788
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHh-CC--CCCCcchHHHHHHHHHhcCCH
Q 036303 165 CNENKMVEAESMFRSMREC-GVVPNLYTYNALMDGYCKVADVNRALEFYHEMLH-HN--LQPNVVTFGVLMDGLCKVGEL 240 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~ 240 (605)
-..|++++|+.-+.-.--. |+. +..+ ..++.-..+ ..|..-.++-.+ .+ .-|+..........+... +
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--P 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--c
Confidence 8888888876433322211 222 2111 111111111 112222222222 11 223333222222222110 0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHH----Hh-cCCHHHHHHHHHHHHhCC---C---CCCh------hhHHHHHHH
Q 036303 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGH----CK-AGNLFEAMSLCSEMEKFE---I---SPDV------FTYNILIKG 303 (605)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~a~~~~~~~~~~~---~---~~~~------~~~~~l~~~ 303 (605)
. .....+.......+...+ .. ...+.+|.+.+.+-.... . ..|. .+......-
T Consensus 266 ~----------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 266 K----------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred c----------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0 000000001111111111 10 112333333333221100 0 0111 111112222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAA 383 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 383 (605)
+.-.|+.-.|...|+..+.....+ ...|-.+...|+...+.++....|+.+...++. |+.+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 345688899999999999876443 333777778899999999999999999988643 777888888888888999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 384 MGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
..-|++.+... +.+...|..+..+..+.+.++++...|++.++. +|..+.+++.....+..+++++.|.+.|+.++..
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998763 224455666666666888999999999999885 5777889999999999999999999999998875
Q ss_pred cCC-CCCCccHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 464 TDG-GYCSPNHVLY--AAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 464 ~~~-~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+. .++-.+...+ ..++. +--.+++..|+.+++++.+ +.|... .|..|...-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322 1111122222 12221 2234899999999999998 667655 888999999999999999999998875
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=7e-15 Score=138.17 Aligned_cols=288 Identities=14% Similarity=0.129 Sum_probs=231.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 273 GNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGI--LANVVTYNSLIDGYCKEGDMEKALS 350 (605)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (605)
-+..+|...|..+..+. .-...+...+..+|...+++++|+++|+.+.+... .-+...|...+-.+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 35788999999865543 33446777888999999999999999999987631 1355677766643322 22333
Q ss_pred HH-HHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 351 VC-SQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEA 428 (605)
Q Consensus 351 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 428 (605)
.+ +.+.+. -+..+.+|..+..+|.-+++.+.|++.|++.+.. .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 33 334444 2457899999999999999999999999999977 34 5677887877788889999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-C
Q 036303 429 KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-D 507 (605)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~ 507 (605)
+ +-+..+|..++..|.++++++.|.-.|+++++.. +.+.+....++..+-+.|+.++|+++++++.. +.| |
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn 556 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKN 556 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCC
Confidence 4 4456678889999999999999999999999864 55677778888889999999999999999997 444 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 508 NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+..--.-+..+...+++++|+..++++.+ +.| +..++..++.+|.+.|+.+.|+.-|-.+.+++|+...
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 44555667778889999999999999988 566 5888999999999999999999999999999998654
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-12 Score=121.23 Aligned_cols=449 Identities=12% Similarity=0.061 Sum_probs=197.4
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHh----
Q 036303 49 KFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLC--GLVADVVT---- 121 (605)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~---- 121 (605)
..+|.....+++++.-.|.+++|..+...-. ...+.........++.+..++++|..++...... .+.-+..+
T Consensus 46 ~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 46 TNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 3688888999999999999999999887663 3456667777778888999999998888732100 00000000
Q ss_pred ------H-----H-------HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 122 ------Y-----G-------VLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMREC 183 (605)
Q Consensus 122 ------~-----~-------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (605)
+ + .-...|....++++|...|.+.+.. |...+..+...-.. . .-.+.+.|+.+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~-~-mlt~~Ee~~ll~~l 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSA-H-MLTAQEEFELLESL 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHH-H-hcchhHHHHHHhcc
Confidence 0 0 0001122223344444444444332 22222211111000 0 00011111111111
Q ss_pred CCC----CCcccHHHHHHHHh-ccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 184 GVV----PNLYTYNALMDGYC-KVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN 258 (605)
Q Consensus 184 ~~~----p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (605)
... -+......+..... +..+ +.....-.+..-.+...+......-..-+...+++.+..++.+.+.+.. ++.
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh 277 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFH 277 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCC
Confidence 000 00000000000000 0000 0000000000000112223333333344444555555555555554432 233
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 259 IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDG 338 (605)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (605)
...+..-|.++...|+..+-..+=.++.+.- |....+|-.+...|...|+..+|.+.|.+....+.. =...|..+...
T Consensus 278 ~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghs 355 (611)
T KOG1173|consen 278 LPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHS 355 (611)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHH
Confidence 3333334445555555555555544554432 333445555555555555555555555554443211 12345555555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKET 418 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 418 (605)
++-.+..++|...+..+-+. ++-...-+--+.--|.+.++...|.+.|.+..... +.|+...+.+.-.....+.+.+|
T Consensus 356 fa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred hhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHH
Confidence 55555555555555544443 11011111122233444555555555555555432 33444444444444445555555
Q ss_pred HHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHH
Q 036303 419 LRLYKEMLEA------KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKA 492 (605)
Q Consensus 419 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 492 (605)
..+|+..+.. ..+.-..+++.|+.++.+.+.+++|+..++..+... +.+..++.+++..|...|+++.|
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-----~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-----PKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-----CCchhHHHHHHHHHHHhcChHHH
Confidence 5555544411 000122345555555555555555555555555442 34445555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 036303 493 SKLFSDMRSDNLRPDNCTYTTMLR 516 (605)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~ 516 (605)
++.|.+++. +.|+..+-..++.
T Consensus 509 id~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 509 IDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHh--cCCccHHHHHHHH
Confidence 555555554 4555444444433
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=2.7e-13 Score=131.16 Aligned_cols=289 Identities=11% Similarity=0.069 Sum_probs=180.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHH
Q 036303 236 KVGELRAAGNFFVHMAKFGVFPN-IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVF--TYNILIKGLCGVGQLEG 312 (605)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 312 (605)
..|+++.|.+.+....+.. |+ ...+-.......+.|+++.|...+.+..+.. |+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4567777777766665542 22 2223334455666677777777777665532 3332 22334556666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH-HHHH---HHHhcCCHHHHHHHHH
Q 036303 313 AEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFS-SLID---GQCKAGNIDAAMGLYT 388 (605)
Q Consensus 313 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~ 388 (605)
|...++.+.+.. +-+......+...+...|+++.|.+.+..+.+.++. +...+. .-.. .....+..+.+.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777777664 335556666777777777777777777777766543 222221 1111 1122222233333444
Q ss_pred HHHHCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 389 EMVIKSL---VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFT--VSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 389 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
.+..... +.++..+..+...+...|+.++|..++++..+.. +.+... ...........++.+.+++.++...+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4443311 1366777778888888888888888888888764 222211 111112223456778888888888776
Q ss_pred cCCCCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 464 TDGGYCSPNH--VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 464 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
. +.|+ ....+++..+.+.|++++|.+.|+++......|++..+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~-----p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-----DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-----CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 3344 566788999999999999999999544333678998888999999999999999999998754
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=3.5e-13 Score=129.50 Aligned_cols=283 Identities=13% Similarity=0.111 Sum_probs=189.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHH
Q 036303 237 VGELRAAGNFFVHMAKFGVFPNIFV-YNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYN--ILIKGLCGVGQLEGA 313 (605)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A 313 (605)
.|+++.|++.+....+.. +++.. +........+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777776666654432 12222 222234446777777777777777663 34433222 234566777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 036303 314 EGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVV-------TFSSLIDGQCKAGNIDAAMGL 386 (605)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 386 (605)
...++++.+.. +-+......+...|.+.|++++|..++..+.+.+..++.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777777765 3356667777777777778888887777777765432211 222223333334445555556
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 387 YTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
++.+... .+.++.....+...+...|+.++|..++++..+. +++..... +.+....++.+++++..++..+..
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC--
Confidence 6555433 2446777778888888889999999888888873 45554332 223335588888888888888764
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+.|+..+..++..+.+.|++++|.+.|+++.+ ..|+...+..+..++.+.|+.++|..++++.+.
T Consensus 325 ---P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 ---GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566677888889999999999999999887 678888888888899999999999998888765
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=3.6e-16 Score=143.65 Aligned_cols=260 Identities=18% Similarity=0.171 Sum_probs=87.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036303 264 CLIDGHCKAGNLFEAMSLCSEMEKFE-ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKE 342 (605)
Q Consensus 264 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (605)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666677777777775433322 1233444444555555666777777777777665422 44455555555 566
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 036303 343 GDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKS-LVPDVVVFTALIDGLSKDGNMKETLRL 421 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (605)
+++++|.+++....+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776665544 2345556666666777777777777777665432 234555666666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 422 YKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+++.++.. |.+..+...++..+...|+.+++.+++....... +.|+..+..+..++...|++++|..++++..+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 77777654 4456667777777777777777666666665542 33445566677777777777777777777766
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 502 DNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 502 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
..| |+.....+++++...|+.++|.++..++.
T Consensus 243 --~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 --LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HSTT-HHHHHHHHHHHT----------------
T ss_pred --ccccccccccccccccccccccccccccccccc
Confidence 334 55566677777777777777777766554
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=6.2e-13 Score=113.95 Aligned_cols=221 Identities=11% Similarity=0.109 Sum_probs=133.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCH
Q 036303 97 KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTV------VIYTILIHGLCNENKM 170 (605)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 170 (605)
.++.++|.++|-+|.+..+ ....+..+|.+.|.+.|.+++|+.+.+.+.++ ||. .+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4577888888888877532 24556677778888888888888888887765 232 2445566667777888
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCCHHHHHHH
Q 036303 171 VEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNV----VTFGVLMDGLCKVGELRAAGNF 246 (605)
Q Consensus 171 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 246 (605)
+.|.++|..+.+.+.- -..+...|+..|-...+|++|++.-+++.+.+..+.. ..|..+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888877765322 3445666777777777888888777777765433221 2233344444445556666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 247 FVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE 323 (605)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 323 (605)
+.+..+.+ +..+..--.+.+.+...|+++.|++.++.+.+.+..--+.+...+..+|...|+.++...++..+.+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66655543 22222333344555556666666666666655442222334455555555556665555555555554
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=9.5e-14 Score=130.73 Aligned_cols=284 Identities=12% Similarity=0.096 Sum_probs=223.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHH
Q 036303 239 ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEI--SPDVFTYNILIKGLCGVGQLEGAEGL 316 (605)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (605)
+..+|...|..+... +..+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+..+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467888888885443 344457777889999999999999999999987431 1245567666654322 223333
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 317 L-QKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL 395 (605)
Q Consensus 317 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 395 (605)
+ +.+.... +..+.+|.++..+|.-+++.+.|++.|+++++.+. -...+|+.+..=+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 3344443 55788999999999999999999999999998742 2678888888888888999999999999886521
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
-+-..|..+...|.+.++++.|.-.|+++++.+ |.+......++..+.+.|+.++|+.+++++.... +.|+..
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~ 559 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLC 559 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchh
Confidence 133345557778999999999999999999877 6677788888999999999999999999998864 455555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
--..+..+...+++++|...++++.+ +.|+.. .|..++..|.+.|+.+.|+..|.-|.+..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55667778889999999999999998 677655 78888899999999999999999888743
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=2.7e-12 Score=113.74 Aligned_cols=286 Identities=13% Similarity=0.129 Sum_probs=186.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 036303 202 VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSL 281 (605)
Q Consensus 202 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 281 (605)
.|+|.+|.+...+-.+.+.. ....|..-+.+.-..|+.+.+-.++.++.+....++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776665422 23344445556667778888888887777753345566666677777778888888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 282 CSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANV-------VTYNSLIDGYCKEGDMEKALSVCSQ 354 (605)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (605)
++++.+.+ +.+.........+|.+.|++.....++..+.+.+.-.|. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 87777765 445666777778888888888888888888877655443 2455555555555555555556655
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 036303 355 MTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV 434 (605)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (605)
.... ...++..-..++.-+...|+.++|.++.++..+++..|. .. ..-.+.+.++...-++..++-.+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 333555566667777777777777777777777755444 11 1223455666666666666665543 4455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+..|+..|.+.+.|.+|...|+..++. .|+..+|+.+.+++.+.|++.+|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL------RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66677777777777777777777766663 56667777777777777777777777766654
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.64 E-value=5.9e-12 Score=120.61 Aligned_cols=460 Identities=14% Similarity=0.071 Sum_probs=265.5
Q ss_pred HhcCChhHHHHH----HHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 95 IKKGKFDSVWEF----YEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 95 ~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
+-..+.+++.-. +.++....+..+..+|..+.-+....|+++.+.+.|++....- -.....|+.+...|...|.-
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSD 373 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccc
Confidence 344455555432 2333333445577777777777777888888888887776542 22456777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHH-HH-hccCChHHHHHHHHHHHhC--CC--CCCcchHHHHHHHHHhc-------
Q 036303 171 VEAESMFRSMRECGVVPNLYTYNALMD-GY-CKVADVNRALEFYHEMLHH--NL--QPNVVTFGVLMDGLCKV------- 237 (605)
Q Consensus 171 ~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~------- 237 (605)
..|..+++.-......|+..+--.++. .| -+.+.+++++++..+.++. +. ...+..+..+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 777777777655433343333322322 22 2456677777666666552 11 12233344444443311
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 036303 238 ----GELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGA 313 (605)
Q Consensus 238 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 313 (605)
....++.+.+++..+.+. .|+.+...+.--|...++...|.+..++..+.+...+...|..+.-.+...+++.+|
T Consensus 454 seR~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 113455566666655432 222333334445666777777777777777765556677777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 314 EGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK 393 (605)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 393 (605)
+.+.+.....- ..|......-+..-...++.+++......+... +. +..... ..++-....+....+.-.
T Consensus 533 l~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~~~q-------~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 533 LDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AEYGVQ-------QTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hhhhHh-------hhhhhhhhhhhhcccccC
Confidence 77777665541 112211112222223355666665555544432 00 000000 001101111111111100
Q ss_pred --CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 394 --SLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT--PS------VFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 394 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
...-...++..+.......+ +.+..-.. +....+. |+ ...|......+.+.+..++|...+.++...
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred cccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 00111122222222111111 11100000 1111111 22 123445566778888999999888888775
Q ss_pred cCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCC
Q 036303 464 TDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMM--LLADMIKMGIV 540 (605)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~ 540 (605)
. +.....|...+..+...|...+|.+.|..+.. +.|+.+ +...+...+.+.|+..-|.. ++..+++ +.
T Consensus 680 ~-----~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~d 750 (799)
T KOG4162|consen 680 D-----PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LD 750 (799)
T ss_pred c-----hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hC
Confidence 3 55677788888888999999999999999987 778755 88899999999998777777 8999998 45
Q ss_pred c-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 541 P-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 541 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
| +.+.|..++.++.+.|+.++|..+|..+.++.+.++.
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 6 6999999999999999999999999999999877543
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=6.3e-11 Score=103.10 Aligned_cols=423 Identities=15% Similarity=0.115 Sum_probs=192.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 036303 56 STLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQG 133 (605)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (605)
..++..+...|++++|+..|+.+ ...++.+.+-.+.-+..-.|.+.+|..+-+...+ ++-.-..+.....+.+
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhC
Confidence 34455555555555555555544 2223344444444444445555555444433321 2222333334444445
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-HHHHHhccCChHHHHHHH
Q 036303 134 DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA-LMDGYCKVADVNRALEFY 212 (605)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~ 212 (605)
+-++-..+.+.+.. +..---+|.......-.+.+|++++...+..+ |+-...|. +.-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 54444444444322 11222233333333344555555555554431 22223332 333444555555555555
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHh
Q 036303 213 HEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA-----GNLFEAMSLCSEMEK 287 (605)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~ 287 (605)
+-.++. ++.++...+..+....+.=.-..|++-.+.+...+- .. | ..+.-.++. .+-+.|++++-.+.+
T Consensus 209 ~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~-~~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 209 KVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID-QE---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc-cc---c-hhHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 544443 111222222222222221111122222222222110 00 0 011111111 223445555444433
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCC
Q 036303 288 FEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG-------DMEKALSVCSQMTEKGV 360 (605)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~ 360 (605)
. -|.. -..++-.|.+++++.+|..+.+.+.-. ++.-|-.-.-.++..| ...-|.+.|+..-+.+.
T Consensus 283 ~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 283 H--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred h--ChHh--hhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 1 1222 223444566777777777766554321 2222222122222222 23445555555444432
Q ss_pred CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036303 361 EPNV-VTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSS 439 (605)
Q Consensus 361 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (605)
.-|. .--..+...+.-..++++.+.++..+..--...|...+ .+.++++..|++.+|.++|-.+....++.+..-...
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 2221 12233445555556677777776666554323233333 466777777777777777776665444444444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL-YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTM 514 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (605)
|..+|.++++++-|++++-+.-. +.+..+ +..+..-|.+.+.+=-|-+.|+.+.. ..|++..|..-
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t-------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGK 500 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT-------PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGK 500 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC-------chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCc
Confidence 66777777777777777655432 222222 33445566677777666677776665 56776666433
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.4e-12 Score=110.40 Aligned_cols=286 Identities=19% Similarity=0.171 Sum_probs=176.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc------cHHHHHHHHhccCCh
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLY------TYNALMDGYCKVADV 205 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~ 205 (605)
..+.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|..+.|+.+.+.+.++ ||.. ....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 567788888888887753 224556667777888888888888888877764 3321 223455666777777
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHH
Q 036303 206 NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNI----FVYNCLIDGHCKAGNLFEAMSL 281 (605)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 281 (605)
+.|.++|..+.+.+ ..-......|+..|-...+|++|.+.-+++.+.+..+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 77777777776643 334456667777777777777777777777665433322 2344455555556677777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 036303 282 CSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVE 361 (605)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 361 (605)
+.+..+.+ +..+..-..+.......|+++.|.+.++.+.+.+...-..+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 77766643 223333344556666777777777777777776544444556666777777777777777777766652
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 036303 362 PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK---DGNMKETLRLYKEMLE 427 (605)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 427 (605)
+.......+...-....-.+.|...+.+-+.+ +|+...+..++..... .|...+...++.+|..
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 23333344444444444555555555555544 5677777766665432 3345555555555553
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.3e-11 Score=109.45 Aligned_cols=287 Identities=13% Similarity=0.068 Sum_probs=209.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 272 AGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSV 351 (605)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 351 (605)
.|+|.+|++...+-.+++-. ....|..-+.+--+.|+.+.+-.++.++.+....++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 67788888877777666532 23345555566667788888888887777653344555566666677777888888887
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 352 CSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV-------VVFTALIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (605)
..++.+.+. -++.......++|.+.|++.....++..+.+.+.-.++ .++..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777777653 35667777778888888888888888888877655444 3556666665565666665666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 036303 425 MLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNL 504 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (605)
.... ...++....+++.-+..+|+.++|.++.++.+++.. .|+ . .....+.+-++...-++..++..+. .
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~----D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~-h 324 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW----DPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ-H 324 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc----Chh---H-HHHHhhcCCCCchHHHHHHHHHHHh-C
Confidence 6543 356677778888889999999999999999988752 333 1 2233455677888888888777763 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 505 RPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
+-++..+..|...|.+.+.|.+|.+.|+.+++ ..|+...|..+++++.+.|+..+|....+...-.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 33456888999999999999999999998887 6689999999999999999999999999988754
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=2.7e-09 Score=100.55 Aligned_cols=293 Identities=10% Similarity=0.062 Sum_probs=145.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------
Q 036303 261 VYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD---VFTYNILIKGLCGVGQLEGAEGLLQKMYKEGIL----------- 326 (605)
Q Consensus 261 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------- 326 (605)
.|..+...|-..|+.+.|..+|++..+...+.- ..+|..-...-.++.+++.|+.+++......-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 445555556666666666666666554322111 123333334444455555565555554322100
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 327 ------ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV 400 (605)
Q Consensus 327 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 400 (605)
.+...|...+..--..|-++....+|+++++..+. ++.........+-...-++++.++|++-+..-..|+..
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 02223444455555566677777777777766543 22222223333444556677777776655553344432
Q ss_pred -hHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHH
Q 036303 401 -VFTALIDGLSK---DGNMKETLRLYKEMLEAKITPSVFTVSSL--IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV 474 (605)
Q Consensus 401 -~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (605)
.|+..+.-+.+ ....+.|..+|++.++ +.+|...-...| ...--+.|-...|+.+|+++...-. ......
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~---~a~~l~ 623 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK---EAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---HHHHHH
Confidence 34443333221 2356777777777777 334332222111 2222345666777777777655421 011133
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYT---TMLRGLLRAKRMLDVMMLLADMIKMGIVP--DAVINQVM 549 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 549 (605)
.|+..|.--...=-+.....+|+++++ .-|+...-. ...+.-.+.|..+.|..++...-+. .+| +...|...
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~tw 700 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTW 700 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHH
Confidence 455444322222123344566666666 345544322 2222334567777777776655542 233 46666666
Q ss_pred HHHHHhcCChhH
Q 036303 550 VRGYQENGDLKS 561 (605)
Q Consensus 550 ~~~~~~~g~~~~ 561 (605)
-..=.+.|+-+.
T Consensus 701 k~FEvrHGnedT 712 (835)
T KOG2047|consen 701 KEFEVRHGNEDT 712 (835)
T ss_pred HHHHHhcCCHHH
Confidence 666667776443
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.1e-10 Score=103.67 Aligned_cols=274 Identities=11% Similarity=-0.001 Sum_probs=149.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 036303 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN-VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSL 370 (605)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (605)
.+......+...+...|+.++|+..|++....+ |+ ........-.+.+.|+.+....+...+.... ......|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 344444455555555555555555555544432 11 1111222222344555555555554444331 1122233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 371 IDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRI 450 (605)
Q Consensus 371 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (605)
+......+++..|+.+-++.+... +.+...+..-...+...|+.++|.-.|+...... |-+...|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 334444555566655555555442 1123333333344555566666666666555443 34555666666666666666
Q ss_pred HHHHHHHHHhhhccCCCCCCccHHHHHHHH-HHHHc-cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 036303 451 SNALNFFLEKTDKTDGGYCSPNHVLYAAII-QALCY-DGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 527 (605)
.+|.-+-....+.. +.+..++..++ ..+.. ..--++|.+++++.+. +.|+.. ....+...|...|+++++
T Consensus 385 kEA~~~An~~~~~~-----~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 385 KEANALANWTIRLF-----QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHHHHHHHHHHHHh-----hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchH
Confidence 66665555555442 33344443332 22222 2234677777777776 666654 555666677777778888
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 528 MMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+.++++.+. ..||......|++.+...+.+++|...|..++.++|++..+
T Consensus 458 i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 458 IKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 888777775 56777777778888888888888888888888877776543
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=4.9e-10 Score=105.65 Aligned_cols=241 Identities=14% Similarity=0.077 Sum_probs=123.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
.|...+..| ..+.+...+++.+.+ ..+.-.++....+-.+...|+.++|....+......+. +...|.++.-.+..
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 333344333 335555555555554 12222233333334444556666666666655554322 45566666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEF 211 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 211 (605)
..++++|++.|...+..+ +.+...+..+.-.-++.++++.....-..+.+..+. ....|..++.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666766666666654 225556666665666666666666666655554222 344566666666666666666666
Q ss_pred HHHHHhCC-CCCCcchHHHHHHHH------HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHH
Q 036303 212 YHEMLHHN-LQPNVVTFGVLMDGL------CKVGELRAAGNFFVHMAKFGVFPNIF-VYNCLIDGHCKAGNLFEAMSLCS 283 (605)
Q Consensus 212 ~~~~~~~~-~~~~~~~~~~l~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 283 (605)
++...+.. ..|+...+....... ...|.++.|.+.+...... ..|.. .-..-...+.+.++.++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 66665542 234444444333222 2344445554444433321 11111 12223444556666666666666
Q ss_pred HHHhCCCCCChhhHHHHHH
Q 036303 284 EMEKFEISPDVFTYNILIK 302 (605)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~ 302 (605)
.+...+ ||...|...+.
T Consensus 244 ~Ll~rn--Pdn~~Yy~~l~ 260 (700)
T KOG1156|consen 244 RLLERN--PDNLDYYEGLE 260 (700)
T ss_pred HHHhhC--chhHHHHHHHH
Confidence 665532 55444444333
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.57 E-value=1.3e-10 Score=112.65 Aligned_cols=297 Identities=20% Similarity=0.174 Sum_probs=196.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
+.......+...|++++|++.+++.. ...........+..+.+.|++++|..+|..+++.++. +...|..+..+..-
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhh
Confidence 34445566788999999999998762 3334455667778899999999999999999998643 55556666655522
Q ss_pred c-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 036303 132 Q-----GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV-EAESMFRSMRECGVVPNLYTYNALMDGYCKVADV 205 (605)
Q Consensus 132 ~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 205 (605)
. .+.+....+++.+...- |.......+.-.+..-..+. .+...+..+...|+++ +|..+-..|......
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 2 35677888888887762 34333333332333222333 3456667777777653 566666666655555
Q ss_pred HHHHHHHHHHHhC----C----------CCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 206 NRALEFYHEMLHH----N----------LQPNV--VTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGH 269 (605)
Q Consensus 206 ~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (605)
.-..+++...... + -+|+. .++..+...|...|++++|..+++..++.. |..+..|..-...+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 5555555554432 1 12222 244566777888888888988888888764 33466777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHh
Q 036303 270 CKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVT--------YNSLIDGYCK 341 (605)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~ 341 (605)
-..|++.+|.+.++.....+ ..|-..=+..+..+.+.|++++|..++....+.+..|.... ......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 88899999888888888765 34555556667777888888888888888877653222111 1334567778
Q ss_pred cCCHHHHHHHHHHHhhC
Q 036303 342 EGDMEKALSVCSQMTEK 358 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~ 358 (605)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 88888887777666543
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=1e-09 Score=103.54 Aligned_cols=435 Identities=15% Similarity=0.112 Sum_probs=231.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 036303 122 YGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCK 201 (605)
Q Consensus 122 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 201 (605)
|..++.+| ..+++.+.++..+.+++. .+....+.....-.+...|+-++|....+.-...++. +.+.|..+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 34444443 556666666666666663 2333444444444555667777777766666665444 66667776666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 036303 202 VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSL 281 (605)
Q Consensus 202 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 281 (605)
..++++|++.|...+..+ +.|...+..+.-.-+..++++..........+.. +.....|..++.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777766653 3455566666655666666666666655555532 23344555566666667777777777
Q ss_pred HHHHHhCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 036303 282 CSEMEKFE-ISPDVFTYNILI------KGLCGVGQLEGAEGLLQKMYKEGILANVVT-YNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
+++..+.. ..|+...+.... ......|.++.|.+.+...... ..|... -..-...+.+.++.++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 77665543 234444433222 2234456666666655544332 112222 2233445667777777777777
Q ss_pred HHhhCCCCcCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCC
Q 036303 354 QMTEKGVEPNVVTFS-SLIDGQCKAGNIDAAM-GLYTEMVIKSLVPDVVVFTALIDGLSKDGN-MKETLRLYKEMLEAKI 430 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~ 430 (605)
.++.. .||..-|. .+..++.+-.+.-++. .+|....+. .|.......+--......+ .+..-.++..+++.|+
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 77776 34444433 3333443333333333 555554443 2222111111111111122 2333445555566665
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC----------CCCccHHHHH--HHHHHHHccCCHHHHHHHHHH
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG----------YCSPNHVLYA--AIIQALCYDGQILKASKLFSD 498 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 498 (605)
++-...+..+ |-.-...+--.++.........+. .-+|....|. .++..+-..|+++.|..+++.
T Consensus 320 p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred CchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4432222222 111111110011111111111000 0145544443 455566677888888888887
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 499 MRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 499 ~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
+.. ..|+.. .|..-.+.+.++|++++|..+++...+.. .+|..+-..-+.-..+.++.++|..+.-+.-+-+
T Consensus 397 AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 397 AID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred Hhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 775 456544 55566677777888888888887777644 3455555566777777888888877766665544
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.7e-12 Score=111.43 Aligned_cols=239 Identities=14% Similarity=0.058 Sum_probs=200.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 332 YNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK 411 (605)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (605)
-+.+..+|.+.|-+.+|.+.++..++. .|-+.+|..|..+|.+..++..|+.++.+.+.. ++.++.....+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367888999999999999999988876 567788888999999999999999999988876 24455555667788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHH
Q 036303 412 DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILK 491 (605)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (605)
.++.++|.++|+...+.. +.+.+...++...|.-.++++-|+++|.+++... ..++..|+.+.-+|...++++-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CCChHHHhhHHHHHHhhcchhh
Confidence 999999999999999876 6778888888888889999999999999999864 5677889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 492 ASKLFSDMRSDNLRPDN--CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 492 A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
++.-|++++..--.|+. .+|-.+.......||+.-|.+.|.-++... ..+.+.++.|+-.-.+.|+.++|+.++..+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99999999875444543 478888888888999999999999887643 235889999999999999999999999999
Q ss_pred HhcCCCCCCCC
Q 036303 570 KESRIGSSETE 580 (605)
Q Consensus 570 ~~~~~~~~~~~ 580 (605)
....|.-.+..
T Consensus 456 ~s~~P~m~E~~ 466 (478)
T KOG1129|consen 456 KSVMPDMAEVT 466 (478)
T ss_pred hhhCccccccc
Confidence 99888765543
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=9.4e-12 Score=112.00 Aligned_cols=204 Identities=13% Similarity=0.060 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
....+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556667777777888888888888777653 3345666777777888888888888888887765 445667777788
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRA 521 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 521 (605)
.+...|++++|.+.+++.+.... .+.....+..+..++...|++++|.+.++++.+. .|+ ...+..+...+...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL---YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc---cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHc
Confidence 88888888888888888876321 1233455667788888999999999999998873 343 55777888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 522 KRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
|++++|...++++++. .+.+...+..++..+...|+.++|..+++.+.+..|
T Consensus 183 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 183 GQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999998875 234677777888899999999999999888876543
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.5e-09 Score=95.30 Aligned_cols=307 Identities=13% Similarity=0.047 Sum_probs=216.3
Q ss_pred CCCCcchHHHHHHHHH--hcCCHHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-h
Q 036303 220 LQPNVVTFGVLMDGLC--KVGELRAAGNFFVHMAK-FGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDV-F 295 (605)
Q Consensus 220 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 295 (605)
.+|...+....+.+++ -.++...+...+-.+.. .-++.|......+..++...|+..+|+..|++....+ |+. .
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhh
Confidence 3444444444444433 34444444444444433 2356677788888899999999999999999887643 332 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 036303 296 TYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQC 375 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (605)
......-.+.+.|+++....+...+.... .-....|-.-+......++++.|+.+-++.+..+. .+...+..-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHH
Confidence 23333334566788888887777776542 12333444445555667788899998888887643 35566666677888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHH
Q 036303 376 KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLI-HGLF-KNGRISNA 453 (605)
Q Consensus 376 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A 453 (605)
..|+.++|.-.|+...... +-+...|..|+.+|...|++.+|..+-....+. ++.+..++..++ ..+. ...--++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 8999999999999888663 347789999999999999999998887776654 255666666653 3332 23345778
Q ss_pred HHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 454 LNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 532 (605)
.+++++.+.. .|+ ..+.+.+...+...|..+.++.++++.+. ..||....+.|.+.+...+.+++|+..|.
T Consensus 424 Kkf~ek~L~~------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 424 KKFAEKSLKI------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHhhhcc------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999988874 455 44556777788889999999999999887 67898888999999999999999999999
Q ss_pred HHHHCCCCcc
Q 036303 533 DMIKMGIVPD 542 (605)
Q Consensus 533 ~~~~~~~~~~ 542 (605)
.+++ +.|.
T Consensus 496 ~ALr--~dP~ 503 (564)
T KOG1174|consen 496 KALR--QDPK 503 (564)
T ss_pred HHHh--cCcc
Confidence 8887 5664
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=1.5e-09 Score=105.39 Aligned_cols=296 Identities=14% Similarity=0.120 Sum_probs=206.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 036303 89 ALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNE- 167 (605)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 167 (605)
-....+...|++++|++.++.-... +......+......+.+.|+.++|..++..++..++ .+..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhc
Confidence 3445667899999999999886654 443556777888999999999999999999999853 3555556666655322
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 036303 168 ----NKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVN-RALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA 242 (605)
Q Consensus 168 ----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (605)
.+.+...++++++...- |...+...+.-.+.....+. .+..++..++..|+| .+|..+-..|.......-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 35677788888887753 44444444443444333444 344566677777755 356666666665555555
Q ss_pred HHHHHHHHHHC----C----------CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 036303 243 AGNFFVHMAKF----G----------VFPNI--FVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG 306 (605)
Q Consensus 243 a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (605)
..+++...... + -+|+. .++..+...|...|++++|++.+++...+. |..+..|..-...+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 55555554321 1 12343 344566778888999999999999988864 3336677888888899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHH--------HHHHHHHHHHhcC
Q 036303 307 VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVV--------TFSSLIDGQCKAG 378 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~ 378 (605)
.|++.+|...++.....+. .|...-+..+..+.+.|+.++|.+++......+..|-.. .......+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888753 366677777888889999999999998887776433221 1234567888889
Q ss_pred CHHHHHHHHHHHHHC
Q 036303 379 NIDAAMGLYTEMVIK 393 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~ 393 (605)
++..|++.|..+.+.
T Consensus 320 ~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 320 DYGLALKRFHAVLKH 334 (517)
T ss_pred hHHHHHHHHHHHHHH
Confidence 888888887776654
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-09 Score=105.55 Aligned_cols=236 Identities=14% Similarity=0.058 Sum_probs=159.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHhHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA-DVVTYGV 124 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 124 (605)
...++.+|-.+.-+....|+++.+.+.|++.. .....+.|+.+...+...|.-..|..+++........| +...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 44688889999999999999999999999873 34556789999999999999999999998877665334 3444444
Q ss_pred HHHHHH-ccCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCC
Q 036303 125 LIDCCC-GQGDVMKALNLFDEMIDK--GI--EPTVVIYTILIHGLCNE-----------NKMVEAESMFRSMRECGVVPN 188 (605)
Q Consensus 125 l~~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~ 188 (605)
.-..|. +.+.+++++.+..+++.. +. ......+..+.-+|... ....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 444444 457788888888777762 11 12344555555555431 1245677788888776544 4
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 036303 189 LYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDG 268 (605)
Q Consensus 189 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (605)
+.....+.--|+..++++.|.+..++.++.+-.-+...+..++..+...+++.+|+.+.+.....- +.|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 444445556677788899999999988887556677888888888888889999998888776531 1122222222223
Q ss_pred HHhcCCHHHHHHHHHHH
Q 036303 269 HCKAGNLFEAMSLCSEM 285 (605)
Q Consensus 269 ~~~~~~~~~a~~~~~~~ 285 (605)
-...++.++++.....+
T Consensus 557 ~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHK 573 (799)
T ss_pred hhhcccHHHHHHHHHHH
Confidence 33356666666555544
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=1.9e-11 Score=100.12 Aligned_cols=206 Identities=15% Similarity=0.041 Sum_probs=177.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLF 445 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (605)
+...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++.+... +.+..++|..+..++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567778999999999999999999884 3356688888899999999999999999999886 678889999999999
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 524 (605)
.+|++++|...|++++.... ......+|..++.|..+.|+++.|...|++.++ +.|+ +.+...+.......|++
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~---Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 115 AQGRPEEAMQQFERALADPA---YGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hCCChHHHHHHHHHHHhCCC---CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccc
Confidence 99999999999999987532 233456788999999999999999999999998 5555 44788899999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 525 LDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
-.|..++++....+ .++...+-..+++-...||.+.|.++=..+...-|...+-
T Consensus 190 ~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 190 APARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999888655 4889999989999999999999999988888888876543
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=4.3e-09 Score=98.35 Aligned_cols=453 Identities=14% Similarity=0.059 Sum_probs=261.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQ 132 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (605)
...=++.+...|++++|++...++. .+.+..++..-+.++++.+.|++|+.+.+.-... ..+...+..-..+..+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 4444566778899999999988873 4566777888888889999999998655543221 11111112223445578
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhc-cCChHHHHHH
Q 036303 133 GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCK-VADVNRALEF 211 (605)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~ 211 (605)
+..++|+..++-... .+..+...-...+.+.|++++|.++|+.+.+.+.+ .+...+++-+. .+--..+ ++
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~-~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV-QL 163 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH-HH
Confidence 899999998883322 24446666777888999999999999999876432 33333322111 1111111 11
Q ss_pred HHHHHhCCCCCCcchHHH---HHHHHHhcCCHHHHHHHHHHHHHCCC------CCC-H-------hhHHHHHHHHHhcCC
Q 036303 212 YHEMLHHNLQPNVVTFGV---LMDGLCKVGELRAAGNFFVHMAKFGV------FPN-I-------FVYNCLIDGHCKAGN 274 (605)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~-~-------~~~~~l~~~~~~~~~ 274 (605)
.+ .....| ..+|.. ....+...|++.+|+++++...+.+. ..+ . .....+..++...|+
T Consensus 164 ~q---~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 164 LQ---SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH---hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 211222 234443 44456678999999999988832110 001 1 123345667788999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHH---HHHhcCCH-H-HHHHHHHHHHHCC-----------CCCCHHHHHHHHHH
Q 036303 275 LFEAMSLCSEMEKFEISPDVFTYNILIK---GLCGVGQL-E-GAEGLLQKMYKEG-----------ILANVVTYNSLIDG 338 (605)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~ 338 (605)
-++|..++..+.+.. ++|........+ +.....++ + .++..++...... ..-....-+.++..
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876 355432222111 11111111 1 1222222211110 00011111223333
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH-HH-hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDG-QC-KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMK 416 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 416 (605)
| .+..+.+.++....... .|.. .+..++.. .. +......+.+++.........-.......+++.....|+++
T Consensus 319 ~--tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred H--hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 3 33344555544443332 2333 33333332 22 22357778888887776633323455666777888999999
Q ss_pred HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC--CCccHHHHHHHHHHHHcc
Q 036303 417 ETLRLYK--------EMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY--CSPNHVLYAAIIQALCYD 486 (605)
Q Consensus 417 ~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 486 (605)
.|.+++. .+.+.+ ..+.+...+...+.+.++-+.|..++.+++....... -..-...+.-+...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 444443 3445566667777787777777777777766432111 111122333444455578
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 487 GQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 532 (605)
|+-++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-.
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 99999999999999842 46777888999998765 6777776544
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5.8e-09 Score=97.48 Aligned_cols=452 Identities=13% Similarity=0.044 Sum_probs=260.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (605)
...=+..+...|++++|.....+++..+ +.+...+..-+-++++.+.+++|+.+.+.-... ..+...+-.-+.+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3344566677899999999999999876 446778888888999999999999665543221 1111111233455668
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCHHHHH
Q 036303 167 ENKMVEAESMFRSMRECGVVPN-LYTYNALMDGYCKVADVNRALEFYHEMLHHNLQP-NVVTFGVLMDGLCKVGELRAAG 244 (605)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 244 (605)
.+..++|...++- ..++ ..+...-...+.+.|++++|+++|+.+.+.+.+. +...-..++.+-. ...+
T Consensus 92 lnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~- 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV- 161 (652)
T ss_pred cccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH-
Confidence 8999999998882 2233 3366667788899999999999999998775321 1111112221111 1111
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC------h-hhHHHHHHHHHhcCCH
Q 036303 245 NFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE-------ISPD------V-FTYNILIKGLCGVGQL 310 (605)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~------~-~~~~~l~~~~~~~~~~ 310 (605)
++.+.... ....+...+......+...|++.+|+++++...+.+ -..+ . ..-..+.-++...|+.
T Consensus 162 ~~~q~v~~-v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPE-VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 11222211 111122223334556778999999999999883211 0000 0 1122345566788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCH-H-HHHHHHHHHhhCCC----------CcCHHHHH-HHHHH
Q 036303 311 EGAEGLLQKMYKEGILANVVTY----NSLIDGYCKEGDM-E-KALSVCSQMTEKGV----------EPNVVTFS-SLIDG 373 (605)
Q Consensus 311 ~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-~-~a~~~~~~~~~~~~----------~~~~~~~~-~l~~~ 373 (605)
++|..++..+++.+. +|.... |.++.. ..-.++ + .++..++....... .......+ .++..
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998763 354322 223221 111111 1 12222222111100 00111111 12222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH-H-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 374 QCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGL-S-KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS 451 (605)
Q Consensus 374 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (605)
..+..+.+.++....... .|.. .+..++..+ . +......+..++....+........+....+......|+++
T Consensus 319 --~tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 --FTNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred --HhhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 234444444443332221 2332 333344332 2 22247778888888777643333556666677788999999
Q ss_pred HHHHHHH--------HhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCH----HHHHHHHHH
Q 036303 452 NALNFFL--------EKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD--NLRPDN----CTYTTMLRG 517 (605)
Q Consensus 452 ~A~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~l~~~ 517 (605)
.|++++. .+.+. ...+.+...+...+.+.++.+.|..++++++.. ...+.. .++..++..
T Consensus 394 ~A~~il~~~~~~~~ss~~~~------~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEA------KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhh------ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 9999998 33332 233344456666677777777777777776641 111222 244445555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 518 LLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
-.+.|.-++|...++++.+.. ++|..+...++.+|++.. .+.|..+-+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 557899999999999999743 457888888888888764 566665443
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=6.2e-12 Score=107.98 Aligned_cols=228 Identities=14% Similarity=0.036 Sum_probs=106.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 264 CLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG 343 (605)
Q Consensus 264 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (605)
.+..+|.+.|.+.+|.+.|+...+. .|-+.||..+..+|.+..+++.|+.++.+-.+. ++.|+.....+.+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555554442 234444555555555555555555555554443 1223323333444444455
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 344 DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYK 423 (605)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (605)
+.++|.++|+...+.. +.+......+...|.-.++++-|+.+|++++..|.. ++..|..+.-+|.-.++++-++..|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5555555555554442 223344444444444455555555555555555433 44445555555555555555555555
Q ss_pred HHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 424 EMLEAKITPS--VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 424 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+..-..|+ ..+|..+.......|++.-|.+.|+-.+... ..+..+++.+...-.+.|++++|..++..+..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-----~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-----AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-----cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 4443322222 2334444444444445555555444444332 23334444444444444555555555444443
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=1.1e-10 Score=113.69 Aligned_cols=485 Identities=13% Similarity=0.088 Sum_probs=249.2
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 036303 72 LWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIE 151 (605)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 151 (605)
+...+..+..|+..+|..++.-|+..|+.+.|- +|..|.-...+.+...|+.++......++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 333445566777788888888888888888877 8888877777777778888888877777777665 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHH----HCCCCCCcccHH---------------HHHHHHhccCChHHHH
Q 036303 152 PTVVIYTILIHGLCNENKMVE---AESMFRSMR----ECGVVPNLYTYN---------------ALMDGYCKVADVNRAL 209 (605)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~p~~~~~~---------------~l~~~~~~~~~~~~a~ 209 (605)
|...+|..|..+|...|+... ..+.+..+. ..|+. ....|. ..+....-.|-++.++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888654 222111111 11221 111111 1122222233344444
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVG-ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKF 288 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 288 (605)
+++..+.... .+. .+..+++-+.... .+++-..+.+...+ .+++.++...+.+-...|+.+.|..++.+|.+.
T Consensus 160 kll~~~Pvsa--~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSA--WNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccc--ccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 4443332211 010 1111233322222 22333333333332 477788888888888888888888888888888
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 036303 289 EISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFS 368 (605)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (605)
|++.+..-|..++-+ .++...++.+++-|...|+.|+..|+...+..+...|....+ +.|. ++...+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~s-q~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGS-QLAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------cccc-chhhhhh
Confidence 887777766666544 677777777888888888888888887777666664431111 1122 1222222
Q ss_pred HHHHHHHhcC-----CHHH-----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-CCHH
Q 036303 369 SLIDGQCKAG-----NIDA-----AMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI--T-PSVF 435 (605)
Q Consensus 369 ~l~~~~~~~~-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~-~~~~ 435 (605)
+-...-.-.| +.+. ....+.+..-.|+......|....+ ...+|..++...+...+..... . .+..
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 2222222222 1111 1112222222243333344443333 3346777888888777754211 1 2233
Q ss_pred HHHHHHHHHHhcC----------------------CHHHHHHHHHHhhhcc------------CCCCCC-------ccHH
Q 036303 436 TVSSLIHGLFKNG----------------------RISNALNFFLEKTDKT------------DGGYCS-------PNHV 474 (605)
Q Consensus 436 ~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~------------~~~~~~-------~~~~ 474 (605)
.+..++.-|.+.- ...+..+......+.. -..... +-..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 3433333332211 1111111111110000 000000 0001
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCccHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM--GIVPDAVINQVMVRG 552 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~ 552 (605)
.-+.++..+...-+..++...-++.... .-| ..|..|++-+....+.+.|..+.++.... .+.-|..-+..+.+.
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 1122333333333344444333333221 111 45677777777777777777777766532 123345566777777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhhhccc
Q 036303 553 YQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGHLK 592 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (605)
+.+.+....+.++.+.+++ ...+.+......+.++.+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks-~a~n~~~~a~~~f~~lns~a 576 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKS-SAENEPLVAIILFPLLNSGA 576 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhH-HhhCCchHHHHHHHHHhhhh
Confidence 8888888888877777776 33334433333444444433
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=7.2e-11 Score=118.86 Aligned_cols=216 Identities=12% Similarity=0.033 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH---------ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 100 FDSVWEFYEEMVLCGLVADVVTYGVLIDCCC---------GQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
+++|...|++.....+. +...|..+..++. ..+++++|...+++..+.+ +.+..++..+..++...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45666666666655322 3344444443332 1233566666666666653 22455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 171 VEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHM 250 (605)
Q Consensus 171 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (605)
++|...|++..+.++. +...+..+...+...|++++|+..+++.++.+ +.+...+..++..+...|++++|...++++
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6666666666665432 34455566666666666666666666666542 112222233333444566666666666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 251 AKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYK 322 (605)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (605)
.+...+.+...+..+..++...|++++|...+.++.... +.+....+.+...|...| +.|...++.+.+
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 543322233345555566666666666666666654421 112223334444445555 355555555443
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=5.6e-11 Score=119.66 Aligned_cols=255 Identities=14% Similarity=0.066 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 036303 309 QLEGAEGLLQKMYKEGILANVVTYNSLIDGYC---------KEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (605)
..++|...+++..+..+ .+...+..+..++. ..+++++|...++++.+.++ .+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 46788888888887642 24455555555443 23457899999999998753 367788888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLE 459 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (605)
+++|...|++++..+ +.+...+..+...+...|++++|...++++++.+ +.+......++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999998874 3356677888888999999999999999999875 23333344445556678899999999998
Q ss_pred hhhccCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 460 KTDKTDGGYCSP-NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 460 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
..... +| ++..+..+..++...|++++|...++++.. ..|+.. ....+...|...| ++|...++.+.+.
T Consensus 432 ~l~~~-----~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 432 LRSQH-----LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHhc-----cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 87643 23 355567788888899999999999988765 455544 4444555666666 4777777776642
Q ss_pred -CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 538 -GIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 538 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
...+.. .......|.-.|+.+.+..+ +++.+.+.-..++
T Consensus 503 ~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~ 542 (553)
T PRK12370 503 EQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWFKR 542 (553)
T ss_pred hhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccchHhhhh
Confidence 112211 12255667778888888766 8888766544433
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=9.2e-11 Score=105.53 Aligned_cols=196 Identities=12% Similarity=0.077 Sum_probs=94.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 036303 52 PSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
+..+..++..+...|++++|...+++. ..+.+..++..++..+...|++++|.+.+++.....+ .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 344555556666666666666666554 1233344555555555555666666666655555432 2344455555555
Q ss_pred HccCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGI-EPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRA 208 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 208 (605)
...|++++|...++....... +.....+..+..++...|++++|...+++.....+. +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554311 112233444444555555555555555555443221 233444444444455555555
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 209 LEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHM 250 (605)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (605)
.+.+++.... .+.+...+..++..+...|+.+.|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555544443 1222333333344444444444444444433
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=1.3e-10 Score=106.80 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036303 343 GDMEKALSVCSQMTEKG---VEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETL 419 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (605)
+..+.++.-+.+++... .......|..+...+...|++++|...|.+.+... +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666666431 11123456667777788888888888888887764 335677888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 420 RLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
..|++.++.. +.+..++..++.++...|++++|++.++..+... |+..........+...+++++|...+++.
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~------P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD------PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8888888765 4456677778888888888888888888888753 33221122222334567888888888765
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 500 RSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM---G--IVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
... ..|+...+ ..+....|+..++ +.++.+.+. . +.| ...+|..++.++.+.|++++|+..|+++.+.+
T Consensus 192 ~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 542 23332221 2233345555443 344444421 1 112 35678889999999999999999999999988
Q ss_pred CCCCCCCc
Q 036303 574 IGSSETEG 581 (605)
Q Consensus 574 ~~~~~~~~ 581 (605)
|.+...+.
T Consensus 267 ~~~~~e~~ 274 (296)
T PRK11189 267 VYNFVEHR 274 (296)
T ss_pred CchHHHHH
Confidence 76554433
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.41 E-value=3.8e-09 Score=104.48 Aligned_cols=185 Identities=11% Similarity=0.044 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 346 EKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEM 425 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 425 (605)
..|+..+.+.++.. ..+..+|+.|.-. ...|++.-+.-.|-+..... +....+|..+...+....+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 45666776666652 2255556555444 55566666666665554432 334556666666677777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---
Q 036303 426 LEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD--- 502 (605)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 502 (605)
.... |.+...|..........|+.-++..+|..........+--++..-|.+........|+.++-+...+++...
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 7654 444555555444555666666666666553222222223444444444333444555555444333333221
Q ss_pred -----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 503 -----NLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 503 -----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
+-.|+ ...|...+....+.+.+.+|.....+.
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 12233 234555555555555555555544443
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=2.3e-10 Score=109.35 Aligned_cols=241 Identities=19% Similarity=0.192 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEK-----GV-EPNVV-TFSSLIDGQCKAGNIDAAMGLYTEMVIK-----SL-VP 397 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~ 397 (605)
+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333455555555555555555444332 10 12222 2233556666777777777777766543 11 11
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC
Q 036303 398 -DVVVFTALIDGLSKDGNMKETLRLYKEMLEA-----K-ITPSV-FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC 469 (605)
Q Consensus 398 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 469 (605)
-..+++.|..+|.+.|++++|...++...+. + ..|.. ..++.++..+...+++++|..+++...+......-
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1235666777778888887777776665432 1 12222 23566777788889999999998877765431111
Q ss_pred Ccc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 036303 470 SPN---HVLYAAIIQALCYDGQILKASKLFSDMRSD-----N-LRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK--- 536 (605)
Q Consensus 470 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 536 (605)
..+ ..+++.+...|...|++++|.+++++++.. | ..+. ...++.+...|.+.+++.+|.++|.+.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 111 356789999999999999999999998762 1 1222 44788899999999999999998887653
Q ss_pred -CCC-Ccc-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 537 -MGI-VPD-AVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 537 -~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
.|. .|+ ..+|..|+.+|.+.|+++.|.++.+++..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 221 233 67889999999999999999999888773
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=4.1e-10 Score=107.73 Aligned_cols=237 Identities=17% Similarity=0.125 Sum_probs=155.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC--CcCH
Q 036303 299 ILIKGLCGVGQLEGAEGLLQKMYKE-----G-ILANVV-TYNSLIDGYCKEGDMEKALSVCSQMTEK-----GV--EPNV 364 (605)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~ 364 (605)
.+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... |. +.-.
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444444445555554444444332 1 012222 2234666677777777777777776542 21 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC--
Q 036303 365 VTFSSLIDGQCKAGNIDAAMGLYTEMVIK-----S-LVPDVV-VFTALIDGLSKDGNMKETLRLYKEMLEA---KITP-- 432 (605)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~-- 432 (605)
.+++.|...|.+.|++++|...++.+... + ..|... .++.+...+...+++++|..++++..+. -+.+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 45666777778888887777776665432 1 122222 3455666788888999999888876542 1112
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc---HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC
Q 036303 433 --SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN---HVLYAAIIQALCYDGQILKASKLFSDMRS----DN 503 (605)
Q Consensus 433 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 503 (605)
-..++..++..|...|++++|.+++++++......+...+ ...++.+...|.+.+++.+|.++|.+... .|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 2447889999999999999999999999886543322222 34577888899999999999999887654 22
Q ss_pred -CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 504 -LRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 504 -~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
-.|+.. +|..|..+|.+.|++++|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 234444 89999999999999999999988776
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=1.2e-09 Score=106.69 Aligned_cols=274 Identities=16% Similarity=0.198 Sum_probs=179.2
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 105 EFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (605)
.++-.+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556666778888888888888888888888777 7777777666667777888887777777777665
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhhHH
Q 036303 185 VVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK-FGVFPNIFVYN 263 (605)
Q Consensus 185 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 263 (605)
.|...+|..|..+|...|++.. ++..++ ....+...+...|.-..-..++..+.- -+.-|+. .
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~ 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---E 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---H
Confidence 4677788888888888887655 222222 122233344455554444455444321 1122332 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036303 264 CLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVG-QLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKE 342 (605)
Q Consensus 264 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (605)
..+......|-++.+++++..+....... .+..++.-+.... .+++-..+.+...+ .|++.++..++.+-...
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 34444566777777777776654322111 1111233333222 23333333333332 47888899999888889
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 036303 343 GDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (605)
|+.+.|..++..|.+.|++.+...|-.|+-+ .++...+..+++-|...|+.|+..|+...+..+...|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999988888777776655 78888888888888888999999988877777776544
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.5e-08 Score=92.52 Aligned_cols=424 Identities=15% Similarity=0.056 Sum_probs=216.3
Q ss_pred HHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChh
Q 036303 59 IIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136 (605)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 136 (605)
..+.+..|+++.|+..|.+. ..++|...|..-..+|...|++++|.+=-.+..+..+. -+..|.....++.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHH
Confidence 34556678888888887765 34556666777777777788887777766666665322 3457777777777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH-----HHHhccCChHHHHHH
Q 036303 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM-----DGYCKVADVNRALEF 211 (605)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~ 211 (605)
+|+..|.+-++.. +-+...+..+..++... .. +.+.|. ++..|..+. +.+.....+...++.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 8888887777663 22444555555555110 00 000110 111111111 111111111111111
Q ss_pred HHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHH-HHHHHHHH-HCCCCC----------------------CHhhHHHHH
Q 036303 212 YHEMLHH-NLQPNVVTFGVLMDGLCKVGELRAA-GNFFVHMA-KFGVFP----------------------NIFVYNCLI 266 (605)
Q Consensus 212 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~-~~~~~~----------------------~~~~~~~l~ 266 (605)
+..-... +...+ ...++.+.......+.- ...-..+. ..+..| -..-...+.
T Consensus 155 ~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 155 IQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred hhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 1100000 00000 00011111000000000 00000000 000000 111234456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHH
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNS-------LIDGY 339 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~ 339 (605)
....+..++..|.+.+....... .++.-++....+|...|.+..+........+.|.. ...-++. +..+|
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 66666777777777777776644 45555566666777777777776666665554421 1222222 23344
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036303 340 CKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETL 419 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (605)
.+.++++.++..|.+.......|+. ..+....+++....+...-.+... ..-...-...+.+.|++..|+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHH
Confidence 5556677777777776554333222 222333444444444333322111 111122245566777778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 420 RLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
..|.+++..+ |.|...|.....+|.+.|.+..|++-.+..++.. ++....|..-+.++....++++|.+.|++.
T Consensus 379 ~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-----p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 379 KHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-----PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777766 5667777777777777777777777777776642 333455555555666667777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHh
Q 036303 500 RSDNLRPDNCTYTTMLRGLLR 520 (605)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~~ 520 (605)
++ ..|+..-+...+.-|..
T Consensus 453 le--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred Hh--cCchhHHHHHHHHHHHH
Confidence 76 45666555444444444
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.9e-08 Score=90.62 Aligned_cols=421 Identities=16% Similarity=0.129 Sum_probs=205.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 036303 91 LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPT-VVIYTILIHGLCNENK 169 (605)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 169 (605)
..+....|+++.|+..|-+.+...+. +...|..-..+|...|++++|++=-.+-.+. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 44556788889999988888887544 7778888888888888888888877777765 455 4478888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHH-----HHHHhcCCHHHHH
Q 036303 170 MVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLM-----DGLCKVGELRAAG 244 (605)
Q Consensus 170 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~ 244 (605)
+++|+..|.+-++..+. +...+..+..++. .+.+. +.. -.++..+..+. +.+.....+.
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~--- 149 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV--- 149 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---
Confidence 88888888888776433 4455555666551 11111 110 00111111111 0010111111
Q ss_pred HHHHHHHHCCCCCCHhhH---HHHHHHHHhcCCHHH-HHHHHHHH-HhCCCCC----------------------ChhhH
Q 036303 245 NFFVHMAKFGVFPNIFVY---NCLIDGHCKAGNLFE-AMSLCSEM-EKFEISP----------------------DVFTY 297 (605)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~-a~~~~~~~-~~~~~~~----------------------~~~~~ 297 (605)
.++..+.+ + +.+...| ..++.+.......+. ....-..+ ...+..| -..-.
T Consensus 150 ~~l~~~~~-~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 150 KILEIIQK-N-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHhhc-C-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 11111111 0 0000000 001111100000000 00000000 0000000 00112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHH-------H
Q 036303 298 NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSS-------L 370 (605)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l 370 (605)
..+..+..+..+++.|.+.+....... -+..-++....+|...|.+..+........+.|.. ...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 334445555556666666666665543 24444555555666666666666555555554322 1112222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 036303 371 IDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS-VFTVSSLIHGLFKNGR 449 (605)
Q Consensus 371 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 449 (605)
..+|.+.++++.++..|.+.+.....|+. ..+....+++....+...-.+ |. ..-...-+..+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccC
Confidence 22344445556666666554443222111 111222333333333322221 11 1112222455566666
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVM 528 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 528 (605)
+..|++.|.++++.. +.|...|.....+|.+.|.+..|++-.+..++ +.|+.. .|..-+.++....+|++|.
T Consensus 374 y~~Av~~YteAIkr~-----P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-----PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666653 45566666666666666666666666666665 344433 4555555555566666666
Q ss_pred HHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 529 MLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 529 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
+.|.+.++. .| +..+...+.+++..
T Consensus 447 eay~eale~--dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 447 EAYQEALEL--DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence 666666653 34 34444445544444
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.32 E-value=3.7e-08 Score=97.75 Aligned_cols=486 Identities=10% Similarity=-0.022 Sum_probs=272.7
Q ss_pred HHHHHhcCChHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChh
Q 036303 59 IIAFSEMGHIEEALWVYRKI-E-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136 (605)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 136 (605)
+..|.+ .+...|+..|-+. + .+.-..+|..++..|....+...|...|+.+...+. .+..........|++..+++
T Consensus 466 a~~~~r-K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 466 ALGCMR-KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHhh-hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHH
Confidence 333444 3366666666544 2 223346677777777766677778888887777642 36667777778888888888
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 137 KALNLFDEMIDKGI-EPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 137 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
.|..+.-..-+... ..-...|....-.|.+.++..+|+.-|+......+. |...|..++.+|.+.|++..|++.|.+.
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 88777333322210 001223344455566777788888888777776555 6777778888888888888888888776
Q ss_pred HhCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 036303 216 LHHNLQPN-VVTFGVLMDGLCKVGELRAAGNFFVHMAKFG------VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEME-- 286 (605)
Q Consensus 216 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 286 (605)
... .|+ ...-......-+..|.+.++...+..+.... ...-..++..+...+...|-..++.+.++...
T Consensus 623 s~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 623 SLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred Hhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 653 232 2222233344566777777777776665421 01112222222222333333334444443322
Q ss_pred -----hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHH
Q 036303 287 -----KFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDM---E---KALSVCSQM 355 (605)
Q Consensus 287 -----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~ 355 (605)
.+....+...|..+..+ ..+|.... .+ .|+......+..-....+.. + -+.+.+-.-
T Consensus 701 f~~~l~h~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 22111222222222222 22222222 11 12222222221111112211 1 111222111
Q ss_pred hhCCCCcCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 356 TEKGVEPNVVTFSSLIDGQCK----A----GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLE 427 (605)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 427 (605)
.+. ..+..+|..++..|.+ . .+...|+..+...++.. ..+..+|+.|.-. ...|++.-+...|-+...
T Consensus 769 lsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 769 LSL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 111 1123344444443333 1 23346777777777652 2355566665544 666888888888877766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC
Q 036303 428 AKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS----DN 503 (605)
Q Consensus 428 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 503 (605)
.. +....+|..++..+.+..+++.|...|.....-. +.|...|..........|+.-++..+|.---+ .|
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-----P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g 918 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-----PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG 918 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-----chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc
Confidence 54 5567788888888999999999999998877643 55667776666666678888888888765222 24
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 504 LRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK---------MGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 504 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
-.|+...|.....-....|+.++-+...+++-. .+.+.+...|...+....+.+.++.|.....++..
T Consensus 919 ka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 919 KAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred ccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554555567777665554444321 23333577888888899999999999887777653
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.9e-07 Score=89.64 Aligned_cols=484 Identities=12% Similarity=0.068 Sum_probs=232.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAI-----------QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADV 119 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 119 (605)
+..+|..++..+.+..+++-|...+..+++.... ..-..+...-...|.+++|..+|++..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 4456777777777777777777666555211111 11122233334567777777777766542
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CCC----
Q 036303 120 VTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRE----------CGV---- 185 (605)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~---- 185 (605)
..|=..|-..|.|++|.++-+.=-+.. =..+|.....-+...++.+.|++.|++... ..+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 233345556677777777665433221 123455555555556666666666654321 100
Q ss_pred -----CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 186 -----VPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIF 260 (605)
Q Consensus 186 -----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 260 (605)
..|...|......+-..|+.+.|+.+|....+ |..+.+..|-.|+.++|-++-++- .|..
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~A 968 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKA 968 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHH
Confidence 11223344444444455555555555554332 333444455556666665554432 2455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036303 261 VYNCLIDGHCKAGNLFEAMSLCSEMEKFEIS----PDVFTYNILIKGLCGVG--QLEGAEGLLQKMYKEGILANVVTYNS 334 (605)
Q Consensus 261 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (605)
....+.+.|...|++.+|...|.+....... .....-..|...+...| +.-.|-++|++.- . -+..
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~ 1040 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHK 1040 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhH
Confidence 5666788888888888888887765431100 00000001111111111 1222233333221 0 0122
Q ss_pred HHHHHHhcCCHHHHHHHHHH--------Hhh--CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CC
Q 036303 335 LIDGYCKEGDMEKALSVCSQ--------MTE--KGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVI----------KS 394 (605)
Q Consensus 335 l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~ 394 (605)
.+..|-+.|.+.+|+++-=+ ++. .....|+...+.-...++...++++|..++-.... ++
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 23345566666655543211 111 12334566666666666666677776665543321 11
Q ss_pred ----------------CCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHH----------HHCCCCC----------CH
Q 036303 395 ----------------LVPDV----VVFTALIDGLSKDGNMKETLRLYKEM----------LEAKITP----------SV 434 (605)
Q Consensus 395 ----------------~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~~~~~----------~~ 434 (605)
-.|+. ..+..+...|.++|.+..|.+-|.+. ++.|-.. ..
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqk 1200 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQK 1200 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccc
Confidence 11222 24555666777888877776655432 1211000 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH---------------ccCCHHHHHHHHHHH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC---------------YDGQILKASKLFSDM 499 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~ 499 (605)
.+| .+..-|.+.-+|.+--++.+.+..-+. ...++..+...|. ..|-.++|-+.+.++
T Consensus 1201 EiY-ImAANyLQtlDWq~~pq~mK~I~tFYT------Kgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka 1273 (1416)
T KOG3617|consen 1201 EIY-IMAANYLQTLDWQDNPQTMKDIETFYT------KGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKA 1273 (1416)
T ss_pred eee-eehhhhhhhcccccChHHHhhhHhhhh------cchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHH
Confidence 000 111112222222221112111111110 0011222222221 112333444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCChhHHHH
Q 036303 500 RSDNLRPDNCTYTTMLRGLL-----------RAKRMLDVMMLLADMIKMGIVPD----AVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
...+ .....++.|-.-.. -..|..+.+.-..-|++....|| ..+|-.++..+....+|..|-+
T Consensus 1274 ~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyR 1351 (1416)
T KOG3617|consen 1274 EQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYR 1351 (1416)
T ss_pred Hhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHH
Confidence 4322 11222333322111 12366667777777776554443 5678889999999999999999
Q ss_pred HHHHHHhcCCCCCC
Q 036303 565 CSEFLKESRIGSSE 578 (605)
Q Consensus 565 ~~~~~~~~~~~~~~ 578 (605)
+++.+.++.|.-+.
T Consensus 1352 al~el~~k~p~~~~ 1365 (1416)
T KOG3617|consen 1352 ALTELQKKVPNVDL 1365 (1416)
T ss_pred HHHHHhhcCCccch
Confidence 99999999887544
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=3.4e-09 Score=87.22 Aligned_cols=197 Identities=13% Similarity=0.039 Sum_probs=150.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
+...|+-.|...|++..|..-+++. .+|.+..+|..+...|.+.|+.+.|.+.|++.+...+. +-.+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4667788888888888888888887 35556678888888888888888888888888887433 67788888888888
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHH
Q 036303 132 QGDVMKALNLFDEMIDKG-IEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALE 210 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 210 (605)
+|++++|...|+.....- ...-..+|..+.-+..+.|+.+.|...|++.++..+. ...+...+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 888888888888887752 1223447777777888888888888888888876543 45566677888888888888888
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 211 FYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKF 253 (605)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 253 (605)
.++.....+ .++..++-..++.-...|+-+.+-+.=..+.+.
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888887775 377777777777777788877777766665553
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=5.9e-09 Score=95.94 Aligned_cols=196 Identities=12% Similarity=-0.071 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 85 QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGL 164 (605)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (605)
..|..++..+...|++++|...|++..+..+ .+...|+.+...+...|++++|...|+..++.. +-+..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455555555566666666666666655532 245556666666666666666666666665542 11344555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 036303 165 CNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAG 244 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (605)
...|++++|.+.|+...+..+ +..............+++++|.+.+.+..... .++...+ .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-
Confidence 566666666666666555422 21111111122233455666666664433221 2221111 1112223333322
Q ss_pred HHHHHHHHC---CC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036303 245 NFFVHMAKF---GV---FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE 289 (605)
Q Consensus 245 ~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 289 (605)
..+..+.+. .+ +.....|..+...+.+.|++++|+..|++....+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222222211 00 1122355556666666666666666666666543
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.26 E-value=8.4e-08 Score=92.12 Aligned_cols=274 Identities=16% Similarity=0.138 Sum_probs=164.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD 344 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (605)
.+.+-.....|.+|+.+++.+.... .-+.-|..+...|...|+++.|.++|.+.- .++..|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455566778888888888887643 334456677788888888888888875532 34556778888888
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (605)
|+.|.++-.+.. |.......|..-..-+-..|++.+|.++|-.+. .|+. .++.|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 888888766543 334455566666666777888888877764332 3332 35667788888877777665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH----
Q 036303 425 MLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR---- 500 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 500 (605)
-.. ..-..+...+..-+...|++..|...|-++-. |...++.|..++-+++|-++-+.--
T Consensus 876 ~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------------~kaavnmyk~s~lw~dayriaktegg~n~ 939 (1636)
T KOG3616|consen 876 HHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------------FKAAVNMYKASELWEDAYRIAKTEGGANA 939 (1636)
T ss_pred hCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-------------HHHHHHHhhhhhhHHHHHHHHhccccccH
Confidence 432 12234555666667777888877777765433 3334444555555555544433110
Q ss_pred --------hCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 036303 501 --------SDNLRPDNC--------TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 501 --------~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
...+.-+.. .+..-++-.+..+.++-|..+-.-..+. ...++...++-.+...|++++|-+
T Consensus 940 ~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~---k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 940 EKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD---KMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc---cCccchhHHhhhhhhccchhhhhH
Confidence 000101100 0111112222334444444443322221 134556667778889999999999
Q ss_pred HHHHHHhcCCCCCCC
Q 036303 565 CSEFLKESRIGSSET 579 (605)
Q Consensus 565 ~~~~~~~~~~~~~~~ 579 (605)
-|-.+.+++.-+..|
T Consensus 1017 hyveaiklntynitw 1031 (1636)
T KOG3616|consen 1017 HYVEAIKLNTYNITW 1031 (1636)
T ss_pred hhHHHhhcccccchh
Confidence 888888888776655
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=3.3e-07 Score=80.15 Aligned_cols=309 Identities=15% Similarity=0.120 Sum_probs=154.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH---HHHHHhccCChHHHHHHHHHHHhCCCCCCcch-HHHHHH
Q 036303 157 YTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA---LMDGYCKVADVNRALEFYHEMLHHNLQPNVVT-FGVLMD 232 (605)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 232 (605)
...+...+...|++..|+.-|...++. |+..|.+ -...|...|+..-|+.-+.+.++. +||-.. -..-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 334444555555555555555555553 2222222 233455555555555555555543 333211 111223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 036303 233 GLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEG 312 (605)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (605)
.+.+.|.++.|..-|+.+++.. |+..+ ...++.+.-..++-. .....+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhh
Confidence 3455666666666666665542 22111 011111100000000 11122233444566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 313 AEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVI 392 (605)
Q Consensus 313 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 392 (605)
|+..+..+++.. +.|...+..-..+|...|++..|+.-++.+.+.. ..+...+..+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 666666665543 3455555555666666666666666555555442 23445555555556666666666666666555
Q ss_pred CCCCCCHhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHH
Q 036303 393 KSLVPDVVVFTAL-------------IDGLSKDGNMKETLRLYKEMLEAKITPSV---FTVSSLIHGLFKNGRISNALNF 456 (605)
Q Consensus 393 ~~~~~~~~~~~~l-------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~ 456 (605)
. .||....... +......++|.++++-.+...+....... ..+..+-.++...|++.+|++.
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 4 3443321111 11123455666666666666655322111 1233444555666777777777
Q ss_pred HHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 457 FLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+++... +.|..++..-..+|.....++.|+.-|+++.+
T Consensus 330 C~evL~~d-----~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 330 CKEVLDID-----PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHhcC-----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 77777642 33466666667777777777777777777776
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=1.2e-07 Score=82.86 Aligned_cols=320 Identities=12% Similarity=0.054 Sum_probs=157.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-HHHH
Q 036303 223 NVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTY-NILI 301 (605)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 301 (605)
++.-...+...+...|++..|+.-|..+++.. +.+..++..-...|...|+...|+.-+....+. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444556666666777777777777766532 222333333455666677777777777776663 4554321 1223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH------------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 036303 302 KGLCGVGQLEGAEGLLQKMYKEGILANV--VTY------------NSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTF 367 (605)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (605)
..+.++|.++.|..-|+.+++.....+. ..+ ...+..+...|+...|+.....+++.. +.+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 3456677777777777777765321110 011 111222233444444444444444431 2344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036303 368 SSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN 447 (605)
Q Consensus 368 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (605)
..-..+|...|++..|+.-++.+.+.. ..+..++..+-..+...|+.+.++...++.++.+ |+.........-
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKk---- 265 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKK---- 265 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHH----
Confidence 444444444444444444444443332 1123333334444444444444444444444432 222211100000
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcC
Q 036303 448 GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-----NCTYTTMLRGLLRAK 522 (605)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g 522 (605)
+.+..+.++. +......++|.++++-.++.++. .|. ...+..+-.++...|
T Consensus 266 --lkKv~K~les--------------------~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 266 --LKKVVKSLES--------------------AEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred --HHHHHHHHHH--------------------HHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccC
Confidence 0000000000 11223455666666666666552 333 113333444455567
Q ss_pred CHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++.+|++...+.+. +.| |..++.--+.+|.-...++.|+.-|+++.+.++++..+
T Consensus 322 ~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred CHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 77777777776665 455 36677777777777777777777777777777665543
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=1.2e-07 Score=91.11 Aligned_cols=201 Identities=9% Similarity=-0.045 Sum_probs=108.7
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 036303 49 KFNPSVFSTLIIAFSEMGHIEEALWVYRKI----EVLPA-IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYG 123 (605)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (605)
|..+..+..++..+...|+.++|...+... ....+ ..........+...|++++|...+++.....+ .+...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHH
Confidence 345556666777777777777766555543 11112 12222233445567777777777777776532 2333333
Q ss_pred H---HHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036303 124 V---LIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC 200 (605)
Q Consensus 124 ~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 200 (605)
. ........+..+.+.+.+...... .+........+..++...|++++|...+++..+..+. +...+..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~ 159 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLE 159 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 2 111111234444444444431111 1222334445556667777777777777777765433 4455666666777
Q ss_pred ccCChHHHHHHHHHHHhCCCC-CCc--chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 201 KVADVNRALEFYHEMLHHNLQ-PNV--VTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 201 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
..|++++|...+++....... ++. ..+..+...+...|++++|..+++.+..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777777777777766654211 111 1233456666667777777777766643
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=5.3e-08 Score=83.23 Aligned_cols=428 Identities=13% Similarity=0.047 Sum_probs=250.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-HHHHH
Q 036303 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA-LMDGY 199 (605)
Q Consensus 121 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~ 199 (605)
-+..++..+++..++++|++++..-.+.. +.+......|..+|....++..|...++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46777777888889999999998888774 337778888889999999999999999998774 445444543 45667
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036303 200 CKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAM 279 (605)
Q Consensus 200 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 279 (605)
.+.+.+..|+++...|.+.. ..-..+...-.......+++..+..+.++....+ +..+.+...-...+.|+++.|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 78888999999888776531 1111222222233345777888888877765432 4444455555567889999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHH
Q 036303 280 SLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNS-----LIDGYCKEGDMEKALSVCSQ 354 (605)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~ 354 (605)
+-|....+.+--.....|+..+. ..+.++++.|++...++++.|++.-+. ++. .+.+ ...|+. ..+...
T Consensus 165 qkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~~lh~S 238 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---LVLHQS 238 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---HHHHHH
Confidence 99988877543344556665554 456788999999999988877542111 100 0000 000000 000000
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 355 MTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKS-LVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS 433 (605)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 433 (605)
. -...++.-...+.+.|+++.|.+.+.+|..+. -..|+.|...+.-. -..+++.+..+-+.-++..+ |-.
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCC
Confidence 0 12234444555677888888888777765332 23466666655432 22344555555555556554 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC-YDGQILKASKLFSDMRSDNLRPDNCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (605)
..++..++-.|++..-++-|-.++.+-....- .-.+...| .++.+++ ..-.+++|.+-++.+... .........
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTy---k~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklA 384 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTY---KFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLA 384 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhH---HHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 67888888888888888888887765332110 01122223 3344444 334667776666554431 000000111
Q ss_pred HHHHHHHhcCCHH---HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 513 TMLRGLLRAKRML---DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 513 ~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.-++.-...++-. +|++-+++.++ .-..+.-..++.|++..|+..+.+.|..-.+.=.+++.|
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE----~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLE----KYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 1111111122211 12222232222 112234456778999999999999999888876666665
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=5.5e-08 Score=83.15 Aligned_cols=287 Identities=14% Similarity=0.076 Sum_probs=145.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH-HHHHHHHc
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYG-VLIDCCCG 131 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 131 (605)
+...+..+.+..++++|++++..- ..+.+......+..+|....++..|.+.|+++-.. .|...-|. .-.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 444555556666777777766644 23335555566666666777777777777776654 22232222 12344456
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVV--IYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
.+.+.+|+.+...|... +... ....-..+....+++..+..++++....| +..+.+...-...+.|+++.|+
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 66677777776666532 1111 11111122334566666666666655322 3334444444455667777777
Q ss_pred HHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----------------------------h
Q 036303 210 EFYHEMLHH-NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNI----------------------------F 260 (605)
Q Consensus 210 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~ 260 (605)
+-|+...+. |..| ...| .+.-+..+.++++.|++...++++.|+...+ .
T Consensus 165 qkFqaAlqvsGyqp-llAY-niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQP-LLAY-NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCCc-hhHH-HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 777666654 3332 2223 3334445566677777776666665432111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036303 261 VYNCLIDGHCKAGNLFEAMSLCSEMEKF-EISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGY 339 (605)
Q Consensus 261 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 339 (605)
.+|.-...+.+.|+++.|.+.+..|.-. ....|++|...+.-.- ..+++.+..+-+.-+...++ ....||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 2222233345566666666666655321 1123444444333221 12334444444444444432 3445566666666
Q ss_pred HhcCCHHHHHHHHH
Q 036303 340 CKEGDMEKALSVCS 353 (605)
Q Consensus 340 ~~~~~~~~a~~~~~ 353 (605)
++..-++.|.+++.
T Consensus 321 CKNeyf~lAADvLA 334 (459)
T KOG4340|consen 321 CKNEYFDLAADVLA 334 (459)
T ss_pred hhhHHHhHHHHHHh
Confidence 66666666665554
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=2.2e-07 Score=89.28 Aligned_cols=263 Identities=13% Similarity=0.027 Sum_probs=132.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYC----KEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (605)
+...|++++|...+++..+.. +.+...+.. ...+. ..+..+.+.+.+..... ..+........+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCC
Confidence 445566666666666665542 223323221 11111 22333444444433111 112223334445556666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSV--FTVSSLIHGLFKNGRISNALNF 456 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~ 456 (605)
+++|...+++..... +.+...+..+...+...|++++|...+++....... ++. ..+..+...+...|++++|+..
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777776653 234455566666677777777777777776654311 222 2234566667777777777777
Q ss_pred HHHhhhccCCCCCCccHHHH-H--HHHHHHHccCCHHHHHHH---HHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 457 FLEKTDKTDGGYCSPNHVLY-A--AIIQALCYDGQILKASKL---FSDMRSDN-LRPDNCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
+++...... ..+..... + .++.-+...|....+.++ ........ ...........+.++...|+.++|..
T Consensus 209 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 209 YDTHIAPSA---ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHhcccc---CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 777643211 01111111 1 222223333432222222 11111100 01111222245556667788888888
Q ss_pred HHHHHHHCCCC-------c-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 530 LLADMIKMGIV-------P-DAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 530 ~~~~~~~~~~~-------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
.++.+...... . ...+....+.++...|++++|.+.+..+....
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88777642211 1 24444555667778888888888888777654
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=7.7e-06 Score=81.95 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGL 409 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (605)
..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++....+....|... +.++-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 34455555555555555554443221 244455555555555555555555555444443333322 3445555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCH
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 489 (605)
++.++..+-.++. . .|+..-...++.-|...|.++.|.-+|.... .|..+...++..|++
T Consensus 1177 Akt~rl~elE~fi----~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS-------------N~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI----A---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS-------------NFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHhchHHHHHHHh----c---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh-------------hHHHHHHHHHHHHHH
Confidence 5555544433321 1 3455555555555555555555555544322 244555555555666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
+.|...-+++ .+..+|..+--+|...+.+.- .+|....+.....-+..++.-|...|-+++-+..++..
T Consensus 1237 Q~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrl-----AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1237 QGAVDAARKA------NSTKTWKEVCFACVDKEEFRL-----AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHhhhc------cchhHHHHHHHHHhchhhhhH-----HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 6665554433 233466666666655444332 23333444445666667777777777777777766655
Q ss_pred Hh
Q 036303 570 KE 571 (605)
Q Consensus 570 ~~ 571 (605)
+-
T Consensus 1306 LG 1307 (1666)
T KOG0985|consen 1306 LG 1307 (1666)
T ss_pred hc
Confidence 43
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=8.8e-06 Score=81.53 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=86.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHH-----HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNAL-----LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGV 124 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (605)
.+...+-.+++.|.+.|-+.+|++.|..+..-....+...+ +..+...-.++.+.+.+..|...++..+..+.-.
T Consensus 604 FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 604 FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQ 683 (1666)
T ss_pred cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445778999999999999999988766211111111110 1223344568888899999988877777776666
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 125 LIDCCCGQGDVMKALNLFDEMIDK-----------GIEPTVVIYTILIHGLCNENKMVEAESMFRS 179 (605)
Q Consensus 125 l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (605)
+..-|+.+=-.+..+++|+..... ++..|+.+.--.|.+.++.|++.+..++.++
T Consensus 684 vatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 684 VATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 666666665566667777665432 2345666667788888999988887776543
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=1.4e-06 Score=84.15 Aligned_cols=308 Identities=17% Similarity=0.184 Sum_probs=155.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG 273 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (605)
+.|+.|.+.|.+.+|.+....-. ....|......+..++.+..-+++|-.+|+++.. +...+.+|.+-.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHccc
Confidence 34556666666655554332111 1223444444455555555555555555555432 111223333333
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 274 NLFEAMSLCSEMEKFEISPDVFTY-NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVC 352 (605)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 352 (605)
-+.+|+++-+-. +|..++.. ......+...|+++.|...|-+.. .....+.+......|.+|+.++
T Consensus 689 af~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHH
Confidence 334444333221 11111111 112223344555555555443321 1122344455566777777777
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 353 SQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP 432 (605)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (605)
+.+..... -...|..+...|...|+++.|.++|.+.- .++..+..|.+.|+|..|.++-.+.. |...
T Consensus 756 dniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~ 822 (1636)
T KOG3616|consen 756 DNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEA 822 (1636)
T ss_pred HHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--Cchh
Confidence 76666522 23345666677777777777777765321 24455666777777777777655543 2122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCT 510 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~ 510 (605)
....|..-..-+-++|++.+|.++|-.+- .|+. .+..|-+.|..+..+++.++- .|+ ..|
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~--------~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt 884 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIG--------EPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDT 884 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEcc--------CchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHH
Confidence 23334444444566777777777665442 2332 345566667777766666553 233 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRC 565 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 565 (605)
...+..-+...|+++.|...|-++- -|..-++.|..++-|++|.++
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 5566666666777777766554322 233344556666666666544
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.1e-08 Score=95.66 Aligned_cols=250 Identities=12% Similarity=0.093 Sum_probs=187.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHH
Q 036303 302 KGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNID 381 (605)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 381 (605)
.-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+..+ .|...+..|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 34567888999999999888875 33677888888888888888899999999988853 37788888888899999989
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCC
Q 036303 382 AAMGLYTEMVIKSLVPDVVVFTALI-----------DGLSKDGNMKETLRLYKEML-EAKITPSVFTVSSLIHGLFKNGR 449 (605)
Q Consensus 382 ~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~ 449 (605)
.|++.++..+...++ |..+. ..+..........++|-++. ..+..+|+.+...|+..|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999998888765311 00000 01111112233444444444 44445888999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVM 528 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 528 (605)
+++|+..|+.++... +.|...||.++..++...+..+|+..|.++++ +.|+.+ ....|.-+|...|.+++|.
T Consensus 446 fdraiDcf~~AL~v~-----Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-----PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHHHHHHHHHHHhcC-----CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 999999999999864 55678899999999999999999999999998 889876 6778888999999999999
Q ss_pred HHHHHHHHCCC---------CccHHHHHHHHHHHHhcCChhHHHHH
Q 036303 529 MLLADMIKMGI---------VPDAVINQVMVRGYQENGDLKSAFRC 565 (605)
Q Consensus 529 ~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~ 565 (605)
+.|-.++...- .++..+|..|=.++.-.++.|-+..+
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 99887764211 11346777777777777776655443
No 99
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.4e-10 Score=73.89 Aligned_cols=49 Identities=45% Similarity=0.932 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036303 152 PTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC 200 (605)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 200 (605)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.12 E-value=7.3e-07 Score=97.25 Aligned_cols=345 Identities=13% Similarity=0.045 Sum_probs=216.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCh--hhHHHHHHHHH
Q 036303 234 LCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEI------SPDV--FTYNILIKGLC 305 (605)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~ 305 (605)
....|+++.+...+..+.......+..........+...|+++++...+......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 345566666666665542111111222233445556778999999999887754210 1111 11222334556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHh
Q 036303 306 GVGQLEGAEGLLQKMYKEGILANV----VTYNSLIDGYCKEGDMEKALSVCSQMTEK----GVE-PNVVTFSSLIDGQCK 376 (605)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~ 376 (605)
..|++++|...++.........+. ...+.+...+...|+++.|...+++.... |.. ........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988763212222 23455666778899999999999887653 111 112344566777888
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 036303 377 AGNIDAAMGLYTEMVIK----SLV--P-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAK--ITP--SVFTVSSLIHGLF 445 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 445 (605)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876653 211 1 12234445566777899999999998876531 112 2334455666778
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHh
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLY--AAIIQALCYDGQILKASKLFSDMRSDNLRPDN---CTYTTMLRGLLR 520 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~ 520 (605)
..|++++|.+.+.+........+........ ...+..+...|+.+.|..++............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998886532211111111011 11223445678999999998776542111111 124466677888
Q ss_pred cCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 521 AKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.|++++|...++++... |... ...++..++.++.+.|+.++|...+.++.+.......
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 99999999999988752 3333 2556778899999999999999999999988654433
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=7e-09 Score=96.91 Aligned_cols=232 Identities=13% Similarity=0.148 Sum_probs=182.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNM 415 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (605)
..-+.+.|++.+|.-.|+..+..++ -+...|..|.......++-..|+..+++.++.. +.+......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 3345788999999999999998853 378899999999999999999999999999874 33667888888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH----H-H--HHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 416 KETLRLYKEMLEAKITPSVFTVSS----L-I--HGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~----l-~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
..|.+.+++-+....+ -...... . . ..+.....+....++|-++....+ ...|+.....|+..|.-.|+
T Consensus 370 ~~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~---~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP---TKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC---CCCChhHHhhhHHHHhcchH
Confidence 9999999998765311 0000000 0 0 011122234445556666555432 24778888899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
+++|++.|+.++. ++|+.. .|+.|..++....+.++|+..|.++++ +.|. ..+...|+-.|...|.+++|.+.+
T Consensus 446 fdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 446 FDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9999999999998 778655 899999999999999999999999998 7786 888899999999999999999999
Q ss_pred HHHHhcCCCCC
Q 036303 567 EFLKESRIGSS 577 (605)
Q Consensus 567 ~~~~~~~~~~~ 577 (605)
=.++.+.++..
T Consensus 522 L~AL~mq~ks~ 532 (579)
T KOG1125|consen 522 LEALSMQRKSR 532 (579)
T ss_pred HHHHHhhhccc
Confidence 99888876633
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.8e-05 Score=77.65 Aligned_cols=171 Identities=19% Similarity=0.185 Sum_probs=120.5
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhH
Q 036303 58 LIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMK 137 (605)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (605)
.+......|.+++|..+|++... |..+=..|...|.+++|.++-+.--+. . -..+|......+-..++.+.
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHH
Confidence 34446678999999999998752 344445666789999998887653322 1 23466666677777888888
Q ss_pred HHHHHHHHHhC----------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 036303 138 ALNLFDEMIDK----------GI---------EPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDG 198 (605)
Q Consensus 138 a~~~~~~~~~~----------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 198 (605)
|++.|++.-.. .+ ..|...|.-....+-..|+++.|+.++..... |..+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 88887764211 10 12334444444445567888888888776553 6678888
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 199 YCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 199 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
.+-.|+.++|-++-++ ..|......+.+.|...|++.+|..+|-++..
T Consensus 948 ~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred EeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 8889999999988765 33667788899999999999999999887654
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=1.2e-06 Score=95.59 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSD----NLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+..++...|++++|...++++... |..++. .+...+..++.+.|+.++|...+.++++
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555555555555544331 211111 1333344444455555555555555543
No 104
>PF13041 PPR_2: PPR repeat family
Probab=99.06 E-value=5.5e-10 Score=71.13 Aligned_cols=49 Identities=51% Similarity=0.905 Sum_probs=32.8
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036303 117 ADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLC 165 (605)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (605)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.06 E-value=1.5e-05 Score=74.53 Aligned_cols=134 Identities=13% Similarity=0.237 Sum_probs=92.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 036303 47 IPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGV 124 (605)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (605)
..|.+-.+|+.|++-+..+ .+++++..++++ ..+....+|...+....+.++++....+|.+.+..- .+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 3567888999999877776 999999999988 355567899999999999999999999999998763 35666776
Q ss_pred HHHHHHcc-CChh----HHHHHHHHHHhC-CCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHC
Q 036303 125 LIDCCCGQ-GDVM----KALNLFDEMIDK-GIEP-TVVIYTILIHGL---------CNENKMVEAESMFRSMREC 183 (605)
Q Consensus 125 l~~~~~~~-g~~~----~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~ 183 (605)
.+..-.+. |+.. ...+.|+-.... |+++ +...|+..+..+ ..+.+++...++++++...
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 66544332 2322 233444444332 4433 334566655443 2344666777888887754
No 106
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=5.5e-07 Score=82.71 Aligned_cols=225 Identities=10% Similarity=0.025 Sum_probs=153.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH--
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG-NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNM-- 415 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 415 (605)
+...+..++|+.+..++++..+ -+..+|+.-..++...| ++++++..+.++..... .+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 3345567778888877777632 24445555555566666 56888888888877642 2445566555555555653
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc---CC----
Q 036303 416 KETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD---GQ---- 488 (605)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~---- 488 (605)
++++.+++++++.+ +-+..+|.....++...|+++++++.++++++.. +.|..+|+....++... |.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-----~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-----VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-----CCchhHHHHHHHHHHhcccccccccc
Confidence 67788888888876 5678888888888888899999999999988864 55667777766655443 22
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC------
Q 036303 489 ILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRA----KRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENG------ 557 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 557 (605)
.++++...++++. ..|+.. .|..+...+... +...+|..++.+.++.+ +.+...+..|++.|+...
T Consensus 199 ~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 199 RDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhh
Confidence 2567777777777 456544 787777777662 44567888888877632 225778888999998642
Q ss_pred ------------ChhHHHHHHHHHHhcCC
Q 036303 558 ------------DLKSAFRCSEFLKESRI 574 (605)
Q Consensus 558 ------------~~~~A~~~~~~~~~~~~ 574 (605)
..++|.++++.+.+.||
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 34668888888754443
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=3.7e-08 Score=89.17 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=66.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----hcCC
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLS----KDGN 414 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~ 414 (605)
+...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+. ..| .+...+..++. ..+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 33445555555444321 23444444455555555555555555555433 112 22222333222 1123
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCH-HHHH
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI-LKAS 493 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~ 493 (605)
+.+|..+|+++.+. .++++.+++.++.+....|++++|.+.+.+++... +.++.++..++.+....|+. +.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-----~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-----PNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHhCCChhHHH
Confidence 55555555554432 24455555555555555555555555555555432 23344444455554555544 4444
Q ss_pred HHHHHHHh
Q 036303 494 KLFSDMRS 501 (605)
Q Consensus 494 ~~~~~~~~ 501 (605)
+.+.++..
T Consensus 257 ~~l~qL~~ 264 (290)
T PF04733_consen 257 RYLSQLKQ 264 (290)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 55555544
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.01 E-value=6.5e-08 Score=82.58 Aligned_cols=152 Identities=10% Similarity=0.092 Sum_probs=113.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD 486 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (605)
..|...|+++.+....+.+.. |. ..+...++.++++..+++.+... +.+...|..++..|...
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-----P~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-----PQNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHC
Confidence 346777877776444322221 10 01223566778888888887764 67788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhH
Q 036303 487 GQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL-LRAKR--MLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 561 (605)
|++++|...|+++.+ +.|+ ...+..+..++ ...|+ .++|.++++++++ ..| +..++..++..+.+.|++++
T Consensus 87 g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 87 NDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHH
Confidence 999999999999988 5564 55777777764 56676 5899999999987 445 68888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 036303 562 AFRCSEFLKESRIGSSET 579 (605)
Q Consensus 562 A~~~~~~~~~~~~~~~~~ 579 (605)
|+..|+++.+.+|++.+.
T Consensus 163 Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 163 AIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhhCCCCccH
Confidence 999999999998886644
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=1.7e-08 Score=91.23 Aligned_cols=249 Identities=14% Similarity=0.140 Sum_probs=136.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDME 346 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 346 (605)
+-+.-.|++..++.-.+ ........+......+..++...|+++.++ ..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455778887776555 222221122334445566777777766443 3333332 555555555554444434445
Q ss_pred HHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 347 KALSVCSQMTEKGVE-PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEM 425 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 425 (605)
.+..-++........ .+..........+...|++++|++++... .+.......++.+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544444333222 22233333334555677888877776532 24555666677777888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHh--cC--CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 426 LEAKITPSVFTVSSLIHGLFK--NG--RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~--~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
.+.+ +..+...+..++.. .| .+.+|.-+|+++..+. .+++.+++.++.++...|++++|.++++++.+
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-----~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-----GSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7642 22333444444322 22 5777777777776653 45666777777777777777777777777765
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 036303 502 DNLRPD-NCTYTTMLRGLLRAKRM-LDVMMLLADMIK 536 (605)
Q Consensus 502 ~~~~p~-~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 536 (605)
. .|+ +.++..++-+....|+. +.+.+++.++..
T Consensus 230 ~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 230 K--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp C---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred h--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3 333 44666666666666766 455566666654
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.99 E-value=2.8e-05 Score=72.78 Aligned_cols=456 Identities=14% Similarity=0.142 Sum_probs=247.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHH
Q 036303 79 EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYT 158 (605)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (605)
..|-|+.+|+.|++-+..+ .++++.+.++++... .+..+..|..-+..-.+..+++..+.+|.+.+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 3667899999999987766 999999999999876 4557788999999999999999999999999876 34566676
Q ss_pred HHHHHHHh-cCCHHH----HHHHHHHH-HHCCCCCC-cccHHHHHHHH---------hccCChHHHHHHHHHHHhCCCCC
Q 036303 159 ILIHGLCN-ENKMVE----AESMFRSM-RECGVVPN-LYTYNALMDGY---------CKVADVNRALEFYHEMLHHNLQP 222 (605)
Q Consensus 159 ~l~~~~~~-~~~~~~----a~~~~~~~-~~~~~~p~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~ 222 (605)
..+.--.+ .|+... ..+.|+-. .+.|..+- -..|+..+..+ ....+++...++|++++...+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~- 169 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH- 169 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-
Confidence 66653332 333333 22333332 23343332 22354444332 2333455666777777653211
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChh-----
Q 036303 223 NVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK--FEISPDVF----- 295 (605)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~----- 295 (605)
....|=+-|. .++.. .|..+-..++. -+...+..|.++++++.. .|......
T Consensus 170 ---nlEkLW~DY~---~fE~~-------------IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~ 228 (656)
T KOG1914|consen 170 ---NLEKLWKDYE---AFEQE-------------INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPK 228 (656)
T ss_pred ---cHHHHHHHHH---HHHHH-------------HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence 1111111110 00100 01111111110 111223333333333321 11100000
Q ss_pred ----------hHHHHHHHHHhcCCH---------HHHHHHHHHHH-HCCCCCCHHH----H-HHHHHHHHhcCC------
Q 036303 296 ----------TYNILIKGLCGVGQL---------EGAEGLLQKMY-KEGILANVVT----Y-NSLIDGYCKEGD------ 344 (605)
Q Consensus 296 ----------~~~~l~~~~~~~~~~---------~~A~~~~~~~~-~~~~~~~~~~----~-~~l~~~~~~~~~------ 344 (605)
.|..+|.- .+.+-. ....-.+++.. -.+..|+... | ....+.+...|+
T Consensus 229 ~T~~e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 229 GTKDEIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred CChHHHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 01111110 000000 00111111111 1111121110 0 001112222232
Q ss_pred -HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 036303 345 -MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG---NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420 (605)
Q Consensus 345 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 420 (605)
-+++..++++..+.-...+..+|..+...--..- ..+....++.++.......-..+|..+++.-.+..-.+.|..
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 4566666766655422223444444333222222 255556666666654222223456677777777778899999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 421 LYKEMLEAKITP-SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 421 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
+|.++.+.+..+ +..+..+++..++ .++.+-|.++|+--+++. ..++..-...+..+...++-..|..+|++.
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-----~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-----GDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 999999887666 5566666666554 678899999999988875 333444456777788889999999999999
Q ss_pred HhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--CCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 500 RSDNLRPDN--CTYTTMLRGLLRAKRMLDVMMLLADMIKM-G--IVPDAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 500 ~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
+..++.|+. .+|..+++--+.-|++..+.++-+++... . ..+....-..+++-|.-.+.+..-..-++
T Consensus 462 l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 462 LTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred HhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 987666654 48999999888999999998887776531 1 22222233345556666666655544333
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=8.5e-08 Score=85.86 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGI-VP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
.+...+.+.|++.+|+..++++++... .| ....+..++.++.+.|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455677889999999999999986421 23 468899999999999999999999999887655
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=6.3e-08 Score=93.16 Aligned_cols=222 Identities=16% Similarity=0.109 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGL 409 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (605)
..-..+...+...|-...|..+++++.- +..++.+|...|+..+|..+..+..+. +|++..|..++...
T Consensus 399 q~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 3445667778888989999998886543 556788899999999999998888874 78888888888877
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCH
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 489 (605)
....-+++|.++.+..... +-..+.......++++++.+.|+...... +-...+|-....+..+.+++
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-----plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-----PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-----ccchhHHHhccHHHHHHhhh
Confidence 7766777888777665432 22233333445789999999999888764 45577888888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+.|.+.|...+. ..||.. .|+.+..+|.+.|+-.+|...++++++-. ..+..+|....-...+.|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999887 677654 89999999999999999999999998866 44677888888889999999999999999
Q ss_pred HHhcCCCCC
Q 036303 569 LKESRIGSS 577 (605)
Q Consensus 569 ~~~~~~~~~ 577 (605)
+.+......
T Consensus 613 ll~~~~~~~ 621 (777)
T KOG1128|consen 613 LLDLRKKYK 621 (777)
T ss_pred HHHhhhhcc
Confidence 988765544
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=7e-07 Score=86.24 Aligned_cols=216 Identities=14% Similarity=0.084 Sum_probs=168.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 036303 296 TYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQC 375 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (605)
.-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+..++ +|++..|..++....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34566777888899999999888764 3556777888899999999998888874 678888888877776
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 376 KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 376 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
...-++.|.++.+....+ .-..+.......+++.++.+.|+...+.+ +.-..+|..++.+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 666677888777655432 22223333345788999999999888876 6677888888888899999999999
Q ss_pred HHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 456 FFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
.|...+.-. +.+...|+++-.+|.+.|+-.+|...++++.+.+ .-+...|...+-.....|.+++|++.+.++.
T Consensus 541 aF~rcvtL~-----Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVTLE-----PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhcC-----CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999888742 4457789999999999999999999999998866 4455577777777788899999999988887
Q ss_pred H
Q 036303 536 K 536 (605)
Q Consensus 536 ~ 536 (605)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 5
No 114
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=2.6e-06 Score=78.27 Aligned_cols=212 Identities=10% Similarity=0.007 Sum_probs=148.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKG-KFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
+..+-..+...++.++|+.+++++ ..|.+..+|+....++...| ++++++..++++.+.++. +..+|+.....+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 444445566788889999999887 35556678887777777777 578999999998887544 55667766656666
Q ss_pred cCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc---CCh-
Q 036303 132 QGDV--MKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV---ADV- 205 (605)
Q Consensus 132 ~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~- 205 (605)
.|+. ++++.+++++++.+ +-+..+|+....++...|+++++++.++++++.++. +..+|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 6653 67888888888875 347888888888888889999999999999888766 677777766655443 222
Q ss_pred ---HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 206 ---NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV----GELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCK 271 (605)
Q Consensus 206 ---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (605)
++.+++..+++... +-+...+..+...+... +...+|...+..+...+ +.+......|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 45667776666653 45667777777776652 33455777776665543 3455666667777664
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=6.1e-08 Score=78.22 Aligned_cols=114 Identities=10% Similarity=-0.033 Sum_probs=92.9
Q ss_pred HHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 455 NFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
.++++.+.. .|+. +.....++...|++++|...|+++.. ..| +...|..+..++...|++++|+..+++
T Consensus 14 ~~~~~al~~------~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 14 DILKQLLSV------DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHc------CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555542 4443 45677788899999999999999987 445 455888888999999999999999999
Q ss_pred HHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 534 MIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 534 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
+++ +.| ++..+..++.++...|++++|...++++.+.+|.++...
T Consensus 84 Al~--l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 84 ALM--LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 997 445 788999999999999999999999999999999887654
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=2.6e-06 Score=88.21 Aligned_cols=235 Identities=12% Similarity=0.089 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 036303 328 NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP-----NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVF 402 (605)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 402 (605)
+...|-..|......++.+.|+++.++++.. +.+ -.-.|.++++.-..-|.-+...++|+++.+.. .....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4456667777777788888888888777664 211 12346666666666677777778888777652 233466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA 482 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (605)
..|...|.+.+.+++|.++++.|.+.- .....+|..++..+.++++-+.|..++.++++..+. ..+.....-.+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk---~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK---QEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch---hhhHHHHHHHHHH
Confidence 777777888888888888888887752 356677888888888888888888888888775321 1133444455556
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh-cCCh
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE-NGDL 559 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~ 559 (605)
-.+.|+.+.+..+|+..+.. .| ....|+.+++.-.+.|+.+.++.+|++++..++.| ....++..--.|.+ .|+-
T Consensus 1610 EFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 66778888888888887763 33 34478888888888888888888888888877777 44444433334444 3666
Q ss_pred hHHHHHHHHHHh
Q 036303 560 KSAFRCSEFLKE 571 (605)
Q Consensus 560 ~~A~~~~~~~~~ 571 (605)
+.+..+-.++.+
T Consensus 1688 ~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1688 KNVEYVKARAKE 1699 (1710)
T ss_pred hhHHHHHHHHHH
Confidence 666555445443
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.6e-06 Score=72.85 Aligned_cols=186 Identities=15% Similarity=0.139 Sum_probs=125.9
Q ss_pred cCCHHHHHHHHHHHhhC---C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 036303 342 EGDMEKALSVCSQMTEK---G-VEPNVV-TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMK 416 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 416 (605)
..+.++..+++..+... | ..++.. .|..++.+....|+.+.|...+.++..+- +-+...-..-...+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45678888888777643 3 333433 34455666667788888888888877662 223332222223355678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 036303 417 ETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496 (605)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (605)
+|.++++.+++.+ |.|..++..-+...-..|+.-+|++-+.+.++.. ..|...|.-+...|...|++++|.-.+
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-----~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-----MNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 8888888888766 5556666666666667777778888888887773 677888888888888888888888888
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 036303 497 SDMRSDNLRPD-NCTYTTMLRGLLRAK---RMLDVMMLLADMIK 536 (605)
Q Consensus 497 ~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 536 (605)
++++- +.|- +..+..+.+.++-.| ++.-|.+++++.++
T Consensus 178 EE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 178 EELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88775 4554 446667777665443 45567777887776
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=4.8e-06 Score=86.29 Aligned_cols=232 Identities=15% Similarity=0.077 Sum_probs=181.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHH
Q 036303 291 SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE-GILA---NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVT 366 (605)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 366 (605)
|.++..|...|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445677888888889999999999999998764 2211 1235777777777778888899999999886 224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 036303 367 FSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSVFTVSSLIHGLF 445 (605)
Q Consensus 367 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 445 (605)
|..|...|.+.+.+++|.++++.|.+.- ......|...+..+.+..+-+.|..++.++++.-.. .........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8889999999999999999999999873 346778888999999999999999999998875311 13445666677778
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC--TYTTMLRGLLRAKR 523 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~ 523 (605)
+.|+.+.+..+|+..+..+ +.....|+..++.-.++|+.+.+..+|+++.+.++.|-.. .|...+..-...|+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-----PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-----PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-----ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999999999998875 5667889999999999999999999999999988877544 55555555555566
Q ss_pred HHHHHHH
Q 036303 524 MLDVMML 530 (605)
Q Consensus 524 ~~~A~~~ 530 (605)
-..+..+
T Consensus 1687 e~~vE~V 1693 (1710)
T KOG1070|consen 1687 EKNVEYV 1693 (1710)
T ss_pred hhhHHHH
Confidence 5444433
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=6.6e-07 Score=80.12 Aligned_cols=187 Identities=12% Similarity=0.027 Sum_probs=126.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--H
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPA---IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADV--V 120 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~ 120 (605)
.+..+..+..++..+.+.|++++|...|+++. .+.+ ..++..++.++.+.|++++|...++++.+..+.... .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 45677788999999999999999999998772 2222 257788889999999999999999999887443221 2
Q ss_pred hHHHHHHHHHcc--------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 036303 121 TYGVLIDCCCGQ--------GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTY 192 (605)
Q Consensus 121 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 192 (605)
++..+..++... |++++|.+.++.+....+. +...+..+..... ... ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 455555666554 7788999999998877322 2223322221111 000 000 011
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 193 NALMDGYCKVADVNRALEFYHEMLHHN--LQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKF 253 (605)
Q Consensus 193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 253 (605)
..+...+.+.|++.+|+..++...... .+.....+..++.++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 245567778888888888888887652 1223457778888888888888888888777654
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=1e-06 Score=89.34 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=140.8
Q ss_pred hHhhcCCchHH-HHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CC
Q 036303 4 VLANAKLYKNA-RCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EV 80 (605)
Q Consensus 4 ~~~~~~~~~~a-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 80 (605)
+++.-|...+| +.++..+-+-+.+++..+..+..+=+...-....+.++..+..|+......|.+++|..+++.+ ..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~ 116 (694)
T PRK15179 37 ALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF 116 (694)
T ss_pred HhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 33444444444 4455555455555555553333332222222335567889999999999999999999999988 35
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 81 LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
|.+..+...++..+.+.+++++|...+++.....+. +......+..++.+.|++++|..+|+++...+ +.+..++..+
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~ 194 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGW 194 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 566788889999999999999999999999987543 67788888899999999999999999999853 3467899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 036303 161 IHGLCNENKMVEAESMFRSMRECGVVPNLYTYNAL 195 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 195 (605)
...+.+.|+.++|...|+...+.- .|....|+.+
T Consensus 195 a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 195 AQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 999999999999999999988762 2334444443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=2.4e-06 Score=72.46 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036303 368 SSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN 447 (605)
Q Consensus 368 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (605)
..+...+...|+-+....+........ +.|.......+....+.|++..|...+.+..... ++|..+++.++.+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 333444444454444444444433221 2233333344444555555555555555555443 44555555555555555
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 448 GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 527 (605)
|++++|..-|.+..+-. ..++..++++...+.-.|+.+.|..++......+ .-|..+-..+..+....|++.+|
T Consensus 148 Gr~~~Ar~ay~qAl~L~-----~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 148 GRFDEARRAYRQALELA-----PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred cChhHHHHHHHHHHHhc-----cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 55555555555554432 2223344445555555555555555555544421 11333444444444455555555
Q ss_pred HHH
Q 036303 528 MML 530 (605)
Q Consensus 528 ~~~ 530 (605)
..+
T Consensus 222 ~~i 224 (257)
T COG5010 222 EDI 224 (257)
T ss_pred Hhh
Confidence 444
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=2e-06 Score=73.50 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=109.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhH
Q 036303 58 LIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMK 137 (605)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (605)
-+..|...|+++......+....+.. .+...++.+++...+++.++.+ +.+...|..+...|...|++++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34567888888776555433322111 1123566677777888877765 3477888888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 036303 138 ALNLFDEMIDKGIEPTVVIYTILIHGL-CNENK--MVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHE 214 (605)
Q Consensus 138 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 214 (605)
|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.++. +..++..+...+...|++++|+..|++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888875 33677777777754 56666 48888888888887655 667778888888888888888888888
Q ss_pred HHhCCCCCCcch
Q 036303 215 MLHHNLQPNVVT 226 (605)
Q Consensus 215 ~~~~~~~~~~~~ 226 (605)
+++.. +|+..-
T Consensus 170 aL~l~-~~~~~r 180 (198)
T PRK10370 170 VLDLN-SPRVNR 180 (198)
T ss_pred HHhhC-CCCccH
Confidence 88764 444443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.74 E-value=2.6e-06 Score=72.24 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=97.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036303 88 NALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNE 167 (605)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (605)
..+...+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555555666666666555554432 23345555556666666777777777777666553 44666677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 036303 168 NKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFF 247 (605)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (605)
|++++|..-|.+..+.-+. +....+.+...+.-.|+++.|..++......+ .-+...-..+.......|+++.|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777666666665332 45556666666666677777766666665543 335555666666666666666666665
Q ss_pred HHH
Q 036303 248 VHM 250 (605)
Q Consensus 248 ~~~ 250 (605)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=2.1e-06 Score=87.17 Aligned_cols=134 Identities=6% Similarity=-0.086 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC- 509 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 509 (605)
+.+...+..|+....+.|.+++|..+++...+.. +.+......++.++.+.+++++|...++++.. ..|+..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHH
Confidence 3345555555555555555555555555555431 22233444455555555555555555555554 334333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
....+..++.+.|++++|..+|++++.. .+.+..++..++.++...|+.++|...|+++.+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334444445555555555555555541 1123555555555555555555555555555544
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.72 E-value=9.2e-07 Score=71.36 Aligned_cols=90 Identities=11% Similarity=-0.119 Sum_probs=41.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGL 518 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 518 (605)
++..+...|++++|...|+..+... +.+...|..++.++...|++++|+..|+++.+ ..| +...+..+..++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l 102 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-----PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 3444444444555544444444432 23344444444445555555555555555544 222 233444444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 036303 519 LRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~ 536 (605)
...|++++|+..+.++++
T Consensus 103 ~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 445555555555555444
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.71 E-value=0.00048 Score=68.98 Aligned_cols=222 Identities=15% Similarity=0.136 Sum_probs=133.1
Q ss_pred HhcCChHHHHHHHHhc-CCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHH
Q 036303 63 SEMGHIEEALWVYRKI-EVLPAIQACNALLN--GLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKAL 139 (605)
Q Consensus 63 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 139 (605)
...+++..|+...+++ ...|+. .|..++. .+.+.|+.++|..+++.....+.. |..+...+-.+|...++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 3456777788777776 233443 2333333 345788888888888877665433 7778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc-CC---------hHHHH
Q 036303 140 NLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV-AD---------VNRAL 209 (605)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~---------~~~a~ 209 (605)
.+|++.... .|+......+..+|.+.+++.+-.+.--++-+. .+-+...+=++++..... .. ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 888888876 566777777777888877766544444344332 222334333444443322 11 12344
Q ss_pred HHHHHHHhCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036303 210 EFYHEMLHHN-LQPNVVTFGVLMDGLCKVGELRAAGNFFV-HMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK 287 (605)
Q Consensus 210 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 287 (605)
+.++.+++.+ .-.+..-...-.......|++++|..++. ...+.-...+...-+.-+..+...++|.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4555555442 11112222223334456778888888873 333332333444455666777778888888888888777
Q ss_pred CC
Q 036303 288 FE 289 (605)
Q Consensus 288 ~~ 289 (605)
.+
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 65
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=4.4e-05 Score=70.93 Aligned_cols=119 Identities=14% Similarity=0.067 Sum_probs=70.4
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
...|++++|+..++.++..- |-|+..+......+.+.++.++|.+.++++....+. ....+..+..++.+.|++.+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHH
Confidence 35666666666666665552 334555555556666666666666666666664221 1344455566666666666666
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMA 251 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (605)
.+++...... +.|+..|..|.++|...|+..++.....+..
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 6666665542 4566666666666666666666665555544
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=3.1e-05 Score=65.89 Aligned_cols=147 Identities=16% Similarity=0.091 Sum_probs=82.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh---
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK--- 376 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 376 (605)
-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.+. .+..+.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3345666666666666655411 2222222233445556666666666666654 144555555555544
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 377 -AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 377 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
.+....|.-+|+++... .+|++.+.+....++...|++++|..+++..+... ..++.++..++.+-...|...++..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHH
Confidence 23466666666666653 25566666666666666666666666666666654 4456666666655556665554443
Q ss_pred HH
Q 036303 456 FF 457 (605)
Q Consensus 456 ~~ 457 (605)
-+
T Consensus 263 r~ 264 (299)
T KOG3081|consen 263 RN 264 (299)
T ss_pred HH
Confidence 33
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=1.1e-05 Score=82.95 Aligned_cols=227 Identities=10% Similarity=0.036 Sum_probs=129.7
Q ss_pred HHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036303 41 ALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI-E-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVAD 118 (605)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 118 (605)
+..-...++.+..++..|+..+...|++++|..+.+.. . .|.....|..++-.+.+.++++++..+ .+... ...+
T Consensus 20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~ 96 (906)
T PRK14720 20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQN 96 (906)
T ss_pred hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccc
Confidence 33333446678889999999999999999999999866 2 333445555555567777776666555 33322 1112
Q ss_pred H-------------------HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 119 V-------------------VTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRS 179 (605)
Q Consensus 119 ~-------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (605)
. ..+..+..+|-+.|+.++|..+++++++.. +-++.+.|.+...|... ++++|.+++.+
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 2 445555666666666666666666666665 33566666666666666 66666666666
Q ss_pred HHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC
Q 036303 180 MRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKF-GVFPN 258 (605)
Q Consensus 180 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 258 (605)
.... +...+++..+.+++.++.... +.+...+. ++.+.+... +...-
T Consensus 175 AV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~----------------~i~~ki~~~~~~~~~ 222 (906)
T PRK14720 175 AIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFL----------------RIERKVLGHREFTRL 222 (906)
T ss_pred HHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHH----------------HHHHHHHhhhccchh
Confidence 5542 333445555555555555432 11222222 222222211 11122
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036303 259 IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLC 305 (605)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (605)
..++..+-..|...++|+++..+++.+.+.. +.|.....-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 3334445556666777777777777777654 234444555555543
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=6.3e-07 Score=72.20 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVR 551 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 551 (605)
+......++..+...|++++|...++++...+ +.+...+..+...+...|++++|...+++.++.. +.+...+..++.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34556677778888999999999999988732 2355678888888889999999999999888743 336888888999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 552 GYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 552 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+|...|++++|...++++.+.+|++..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccch
Confidence 999999999999999999999887654
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.65 E-value=4.4e-06 Score=85.72 Aligned_cols=218 Identities=10% Similarity=0.118 Sum_probs=147.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 036303 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLI 371 (605)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 371 (605)
.+...+..|+..+...+++++|..+.+...+.. +-....|-.++..+.+.++.+.+..+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 345677888888889999999999998777653 22333444444466666665555444 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 372 DGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS 451 (605)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (605)
.......++.....++..+... .-+...+..++.+|.+.|+.+++..+|+++++.+ +.+..+++.++..|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3333334443333333444433 2344578889999999999999999999999988 77899999999999999 999
Q ss_pred HHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH---------------
Q 036303 452 NALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTML--------------- 515 (605)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~--------------- 515 (605)
+|++++.+++.. +...+++..+.++|+++.. ..|+.. .+..+.
T Consensus 167 KA~~m~~KAV~~-------------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 167 KAITYLKKAIYR-------------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHHHHHHHHHHH-------------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHH
Confidence 999999887653 5556788999999999988 445433 222211
Q ss_pred -----HHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHH
Q 036303 516 -----RGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQ 554 (605)
Q Consensus 516 -----~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 554 (605)
..|...++|++++.+++.+++. .| |......++.+|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 2333455677777777777663 33 5556666666665
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=6.2e-05 Score=63.56 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=141.9
Q ss_pred hcCCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCH
Q 036303 306 GVGQLEGAEGLLQKMYKE---G-ILANVV-TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNI 380 (605)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (605)
...+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 346788888888887642 3 344543 3445556667889999999999998876 344555544445556678999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036303 381 DAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEK 460 (605)
Q Consensus 381 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (605)
++|+++|+.++..+ +.|..++-.-+-..-..|...+|++-+.+.++. +..|.+.|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999875 556667766666677788888999888888875 4779999999999999999999999999998
Q ss_pred hhccCCCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCC
Q 036303 461 TDKTDGGYCSPNHVLYAAIIQALCYDG---QILKASKLFSDMRSDNLRP 506 (605)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p 506 (605)
+-.. |-++..+..+...+.-.| +..-|.++|.+.++ +.|
T Consensus 181 ll~~-----P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 181 LLIQ-----PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred HHcC-----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 8753 344555556666555443 67789999999987 444
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=4.1e-05 Score=65.17 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=48.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK----NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY 485 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 485 (605)
.+..+.+-|...+++|.+- .+..+++.|..+|.+ .+...+|.-+|+++..+. +|++.+.+..+.++..
T Consensus 148 lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-----~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-----PPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-----CCChHHHccHHHHHHH
Confidence 3444445555555555442 233344444444332 224455555555554442 4555555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 486 DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (605)
.|++++|..+++.++... .-++.+...++-.--..|..
T Consensus 220 ~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 555555555555555432 22344444444333334433
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.54 E-value=4.7e-06 Score=67.07 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
.++..+...|++++|.+.++...... +.+...+..+..++...|++++|..+++++.+.+ +.+...+..+...+
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33333444444444444444443321 2233334444444444444444444444443311 11222333344444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 036303 519 LRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~ 536 (605)
...|++++|...+++.++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=5.4e-05 Score=70.33 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=111.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHH
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALC 484 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 484 (605)
...+...|+++.|...+..++..- |.|...+......+.+.|+.++|.+.+++++.. .|+ ...+-.+..++.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~~~~l~~~~a~all 385 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL------DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCccHHHHHHHHHHH
Confidence 334556788888888888887753 666777777788888889999999999888876 344 566677888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
+.|++.+|+.++++.... .+-|+..|..|.++|...|+..++... .+..|.-.|++++|..
T Consensus 386 ~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHHHHHH
Confidence 889999999988888763 344677888888899888887666443 3445677788888888
Q ss_pred HHHHHHhcCCCCCCC
Q 036303 565 CSEFLKESRIGSSET 579 (605)
Q Consensus 565 ~~~~~~~~~~~~~~~ 579 (605)
.+..+.+....+++.
T Consensus 447 ~l~~A~~~~~~~~~~ 461 (484)
T COG4783 447 FLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHhccCCcHH
Confidence 888888776544443
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.50 E-value=7.7e-06 Score=66.41 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=87.9
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKR 523 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 523 (605)
..++...+...++.+....++. +......-.+...+...|++++|...|+.+.+....|+ ......+...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4778888888888888765321 12234444566778889999999999999998542222 2245567788889999
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 524 MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
+++|+..++.... -...+..+...+++|.+.|++++|+..|+++
T Consensus 101 ~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999865322 2235667788999999999999999999876
No 137
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=4.6e-07 Score=51.47 Aligned_cols=29 Identities=41% Similarity=0.761 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 151 EPTVVIYTILIHGLCNENKMVEAESMFRS 179 (605)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (605)
.||..+|+.|+.+|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 138
>PF12854 PPR_1: PPR repeat
Probab=98.40 E-value=4.3e-07 Score=51.56 Aligned_cols=34 Identities=53% Similarity=0.770 Sum_probs=30.8
Q ss_pred CCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHH
Q 036303 113 CGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMI 146 (605)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 146 (605)
+|+.||..+|+.+|.++++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999873
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0034 Score=63.24 Aligned_cols=191 Identities=14% Similarity=0.033 Sum_probs=125.9
Q ss_pred HHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHH
Q 036303 61 AFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKA 138 (605)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 138 (605)
...+.|+.++|..+++... ...+..+...+-.+|...++.++|..+|++..+. .|+..-...+..+|.+.+++.+-
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998773 3346667777778888999999999999999886 45677778888889998888766
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCChHH
Q 036303 139 LNLFDEMIDKGIEPTVVIYTILIHGLCNEN-K---------MVEAESMFRSMRECG-VVPNLYTYNALMDGYCKVADVNR 207 (605)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~ 207 (605)
.++--++-+. .+-....+=+++..+.+.- . ..-|.+.++.+.+.+ .--+..-.......+...|.+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5555555543 2334443334444444321 1 234666677776653 11111112223344557788999
Q ss_pred HHHHHHHHH-hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 208 ALEFYHEML-HHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFG 254 (605)
Q Consensus 208 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (605)
|++++..-. +.-.+.+...-+.-+..+...+++.+..++..++...+
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 999984433 33222333444456777788899999999988888776
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=3.3e-06 Score=73.16 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=71.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCC
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGD 558 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 558 (605)
.-+.+.+++.+|+..|.++++ +.| |.+.|..-..+|.+.|.++.|++-.+.++. +.|. ...|..|+.+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 345566788888888888887 555 445666777788888888888888877776 5563 7788888888888888
Q ss_pred hhHHHHHHHHHHhcCCCCCC
Q 036303 559 LKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 559 ~~~A~~~~~~~~~~~~~~~~ 578 (605)
+++|.+.|+++++++|++..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHHHhhhccCCCcHH
Confidence 88888888888888887763
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.5e-05 Score=69.69 Aligned_cols=88 Identities=13% Similarity=0.015 Sum_probs=43.6
Q ss_pred HccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCh
Q 036303 484 CYDGQILKASKLFSDMRSD---NLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDL 559 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 559 (605)
.+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+..+|+.-.+.+++ +.|. ...+..-+.++...++|
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555541 1222233344444444455555555555555544 3332 44444445555555555
Q ss_pred hHHHHHHHHHHhcC
Q 036303 560 KSAFRCSEFLKESR 573 (605)
Q Consensus 560 ~~A~~~~~~~~~~~ 573 (605)
++|++-++++.+..
T Consensus 338 e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHhhc
Confidence 55555555555543
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.38 E-value=7.8e-06 Score=64.15 Aligned_cols=102 Identities=16% Similarity=0.064 Sum_probs=82.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c-cHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIV-P-DAVINQV 548 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ 548 (605)
++...+..+...|++++|.+.++++.+. .|+ ...+..+..++...|++++|...+++++..... + ...++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556777888899999999999999873 343 346667888999999999999999999863211 1 3677889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
++.++.+.|++++|...++++.+..|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999999999999999987654
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=9e-06 Score=64.26 Aligned_cols=98 Identities=7% Similarity=-0.041 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRG 552 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 552 (605)
...-.+..-+...|++++|.++|+-+.. +.|... .|..|..+|-..|++++|+..+.++.... +.|+..+..++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344566667789999999999999887 556544 77788888889999999999999999854 2379999999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCC
Q 036303 553 YQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
+...|+.+.|++.|+.+...--
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999988763
No 144
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.34 E-value=0.002 Score=62.79 Aligned_cols=203 Identities=13% Similarity=0.116 Sum_probs=137.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------cCChhHHHHHHHHHHHCCCCC
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK----------KGKFDSVWEFYEEMVLCGLVA 117 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~~~~ 117 (605)
+++-|..|..++......-.++.|...|-++.+-+.+..-..+-..+.+ -|+|++|.++|-.+-+++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 4567889999999999999999999999888766666554444333332 378888888887765542
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 036303 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPT----VVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN 193 (605)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 193 (605)
..+....+.|+|-...++++.- |...| ..+|+.+...+.....+++|.+.+..-.. ..
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 3356677778887776665432 11212 34788888888888888888888765432 12
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG 273 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (605)
..+.++.+..++++-..+.+. .+.+....-.+..++.+.|.-++|.+.+-+... |. ..+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHH
Confidence 356666666666665544443 345667777888889999998888877654321 22 2445677778
Q ss_pred CHHHHHHHHHHH
Q 036303 274 NLFEAMSLCSEM 285 (605)
Q Consensus 274 ~~~~a~~~~~~~ 285 (605)
+|.+|.++-+..
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 888888776654
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.6e-05 Score=67.42 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=97.7
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCc-cHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRA---KRMLDVMMLLADMIKMGIVP-DAVI 545 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~-~~~~ 545 (605)
+.|...|..|..+|...|+.+.|..-|.++.+. -.+++..+..+..++..+ ....++..+++++++ ..| |...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHH
Confidence 677889999999999999999999999999983 234566888888877654 346788999999997 455 7889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhhhc
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGH 590 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (605)
...|+..+...|++.+|...|+.+.+..|.+.|+....-..+-..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999866555444443
No 146
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.28 E-value=0.0029 Score=57.34 Aligned_cols=257 Identities=14% Similarity=0.131 Sum_probs=153.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 036303 305 CGVGQLEGAEGLLQKMYKEGILANVV--TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDA 382 (605)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 382 (605)
.-.|+++.|.+-|+.|... |... -...|.-.--+.|+.+.|.++-+..-..- +.-.-.....+...+..|+|+.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3456777777777776642 1111 11222222345667777776666665542 1233455666777777777777
Q ss_pred HHHHHHHHHHCC-CCCCHhhH--HHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 036303 383 AMGLYTEMVIKS-LVPDVVVF--TALIDGL---SKDGNMKETLRLYKEMLEAKITPSVF-TVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 383 a~~~~~~~~~~~-~~~~~~~~--~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 455 (605)
|+++++.-.... +.++..-- ..|+.+- .-..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 777776555432 22232211 1122111 1123455566655555554 44432 23334567888999999999
Q ss_pred HHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 456 FFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD-NLRPDNC-TYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
+++.+-+. .|++..+. +..+.+.|+. ++.-++++... .++||.. +...+..+....|++..|..--+.
T Consensus 285 ilE~aWK~------ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 285 ILETAWKA------EPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred HHHHHHhc------CCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99998875 56665543 3344456654 33333333221 2566654 667778888889999999888777
Q ss_pred HHHCCCCccHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCCCC
Q 036303 534 MIKMGIVPDAVINQVMVRGYQEN-GDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
..+ ..|...+|..++++-... ||-.+++.++-+..+ .|.++.|.
T Consensus 355 a~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~-APrdPaW~ 399 (531)
T COG3898 355 AAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK-APRDPAWT 399 (531)
T ss_pred Hhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc-CCCCCccc
Confidence 766 678889999999987766 999999999888876 45555443
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=8.1e-05 Score=60.44 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 036303 377 AGNIDAAMGLYTEMVIKSLVPD--VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV--FTVSSLIHGLFKNGRISN 452 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 452 (605)
.++...+...++.+........ ......+...+...|++++|...|+.+......++. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555421110 112222334455566666666666666654312211 123344555556666666
Q ss_pred HHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 453 ALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
|+..++..... ...+..+...+.++...|++++|...|+++
T Consensus 104 Al~~L~~~~~~------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66665442221 223334445555566666666666665543
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.23 E-value=5.3e-06 Score=57.34 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENG-DLKSAFRCSEFLKESRI 574 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 574 (605)
++.+|..+...+...|++++|+..|+++++. .| +..++..++.+|...| ++++|++.++++.+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888889999999999999999999984 45 6889999999999999 79999999999999887
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.20 E-value=2.8e-05 Score=58.14 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=79.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQ 554 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 554 (605)
+..++..+...|++++|...++++.+ ..|+ ...+..+...+...|++++|...+++.++.. +.+..++..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 45667778888999999999999887 3444 4577788888888999999999999988743 235678889999999
Q ss_pred hcCChhHHHHHHHHHHhcCCC
Q 036303 555 ENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 555 ~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..|++++|...++++.+.+|.
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999887763
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=2.3e-05 Score=74.07 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=55.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL 518 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (605)
-+..+...|++++|+..|.+++. . .+.+...|..+..+|...|++++|+..++++++ +.|+ ...|..+..+|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~-~----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID-L----DPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-h----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHH
Confidence 34455566677777777766664 1 122345556666666666777777777766666 3443 34566666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 036303 519 LRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~ 536 (605)
...|++++|+..++++++
T Consensus 81 ~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 81 MKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 666777777777666665
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=7.2e-05 Score=70.36 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG 448 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (605)
.++..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|.+++.+.++.. +.+...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444455555555555555441 22 22234444444445555555555555432 334444444444455555
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
+++.|+.+.++++... +.+..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-----P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-----PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555431 2223355555555555555555555554443
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=9.3e-05 Score=69.60 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGL 409 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (605)
.....++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|++++.+.+... +.+...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344566677777899999999999999874 44 44557888888899999999999999763 34666666667778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
...++++.|+.+.+++.+.. |.+..+|..|+.+|...|+++.|+..++.+..
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 89999999999999999875 55677999999999999999999998887654
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.17 E-value=6.8e-06 Score=55.92 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+...+...|++++|...|+++++.. +-+..++..++.++...|++++|..+++++.+.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567888999999999999998743 2268899999999999999999999999999999875
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.16 E-value=4.4e-06 Score=60.36 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHH
Q 036303 486 DGQILKASKLFSDMRSDNL-RPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|+.++++ .+ ..| +..+...++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999998322 12445666688999999999999999988 32 233 4566667799999999999999
Q ss_pred HHHHHH
Q 036303 564 RCSEFL 569 (605)
Q Consensus 564 ~~~~~~ 569 (605)
++++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998864
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.16 E-value=0.00017 Score=71.23 Aligned_cols=141 Identities=12% Similarity=0.054 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHcc--------CCHHHHHHH
Q 036303 430 ITPSVFTVSSLIHGLFK--N---GRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYD--------GQILKASKL 495 (605)
Q Consensus 430 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~ 495 (605)
.+.+...|..++.+... . +....|+.+|+++++. .|+ ...|..+..++... ++...+.+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 35566666666655432 2 2356777777777775 333 34444433333221 123444555
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 496 FSDMRSDN-LRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 496 ~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
.++..... ...++..|..+.-.....|++++|...++++++ +.|+...|..++.++...|+.++|...++++..++|
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55544421 233556777777667778999999999999998 457888999999999999999999999999999999
Q ss_pred CCCC
Q 036303 575 GSSE 578 (605)
Q Consensus 575 ~~~~ 578 (605)
..+.
T Consensus 485 ~~pt 488 (517)
T PRK10153 485 GENT 488 (517)
T ss_pred CCch
Confidence 8664
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.14 E-value=5.5e-05 Score=59.90 Aligned_cols=97 Identities=7% Similarity=0.024 Sum_probs=71.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
.-...+.++..+...|++++|..+|+-+ ..+.+...|..|..++-..|++++|+..|......++ .|+..+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3345666777777778888888888766 3556677777777777788888888888888777764 367777777777
Q ss_pred HHccCChhHHHHHHHHHHhC
Q 036303 129 CCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~ 148 (605)
+...|+.+.|++.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888887777654
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.12 E-value=9.4e-05 Score=62.16 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=54.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
+..++..+...|++++|...|+++.+....+. ...+..+..++.+.|++++|...++++++ ..| +...+..++.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 44444445555555555555555554211111 23444555555555555555555555554 223 34444555555
Q ss_pred HHhcCC--------------hhHHHHHHHHHHhcCCCC
Q 036303 553 YQENGD--------------LKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 553 ~~~~g~--------------~~~A~~~~~~~~~~~~~~ 576 (605)
|...|+ +++|.+.++++.+.+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 555554 677888888888888876
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=0.00012 Score=67.02 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=52.0
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----cH
Q 036303 476 YAAIIQALCYD-GQILKASKLFSDMRSD----NLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-----DA 543 (605)
Q Consensus 476 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~ 543 (605)
+..+...|... |++++|++.|+++.+. + .+. ..++..++..+.+.|++++|+++|++........ +.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33444455555 6666666666665541 2 111 1245555556666666666666666665432211 11
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 544 -VINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 544 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
..+...+-++...||.-.|.+.+++....+|....+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 223334445566666666666666666666655444
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.09 E-value=0.0015 Score=52.65 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---C
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP---D 507 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~ 507 (605)
.|+...-..|..++.+.|+..+|...|++...-. +..|...+..+.++....+++.+|...++++.+.+ | +
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~ 159 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRS 159 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCC
Confidence 4555556666777777777777777777766532 35566666667777777777777777777776632 2 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 036303 508 NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
+.+...+.+++...|++..|...|+.++. .-|+...-...+..+.++|+.++|..
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 22444566677777777777777777776 34555555555556677776666554
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=7.3e-05 Score=65.08 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=69.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC
Q 036303 408 GLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG 487 (605)
Q Consensus 408 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 487 (605)
-..+.+++.+|+..|.+.++.. +.|...|..-..+|.+.|.++.|++-.+..+... +.-..+|..|..+|...|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-----p~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-----PHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccC
Confidence 3456677777777777777764 4455555666677777777777777777777632 223556777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRG 517 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (605)
++++|++.|+++++ +.|+..+|..=+..
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 77777777777776 67777766544443
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0019 Score=58.94 Aligned_cols=164 Identities=13% Similarity=0.029 Sum_probs=88.4
Q ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----
Q 036303 330 VTYNSLI-DGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTA---- 404 (605)
Q Consensus 330 ~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 404 (605)
.++..+- .++.-.|+.++|...--.+++.+. .+......-..++...++.+.+...|.+.+.. .|+...--.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhh
Confidence 3444332 344566777777776666666532 13332222233344466777777777777655 233321111
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc
Q 036303 405 ---------LIDGLSKDGNMKETLRLYKEMLEAK---ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN 472 (605)
Q Consensus 405 ---------l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 472 (605)
-.+-..+.|++..|.+.|.+.+..+ +.++...|.....+..+.|+.++|+.-.+++++. .+.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~s 319 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSS 319 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHH
Confidence 1122345677777777777776542 2333444555555666777777777777666652 221
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 473 -HVLYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 473 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
...+..-..++...++|++|++-++++.+.
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222333344555666777777777776653
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=0.00018 Score=56.32 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcC--CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIE--VLP---AIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA--DVVTYGVLI 126 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 126 (605)
++..++..+.+.|++++|.+.|+++. .+. ...++..++.++.+.|+++.|...|+.+....+.. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555555555555555555555541 111 12344445555555555555555555555432111 123444445
Q ss_pred HHHHccCChhHHHHHHHHHHhC
Q 036303 127 DCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 127 ~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
.++.+.|+.++|...++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=0.0014 Score=60.14 Aligned_cols=126 Identities=12% Similarity=0.099 Sum_probs=56.3
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC----CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HH-HHHH
Q 036303 373 GQCKA-GNIDAAMGLYTEMVIK----SLVP--DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS-----VF-TVSS 439 (605)
Q Consensus 373 ~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~ 439 (605)
.|... |+++.|++.|.+.... + .+ -...+..+...+.+.|++++|..+|+++.......+ .. .+..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5666666666555432 1 11 112344555556666677777777766655322111 11 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc--cCCHHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY--DGQILKASKLFSDM 499 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 499 (605)
.+-++...|++..|.+.+++.....+.-...........++.++-. ...+..|+.-|+.+
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2334445566666666666655443222222223344445554432 22344555555444
No 164
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.01 E-value=6.6e-05 Score=67.91 Aligned_cols=139 Identities=9% Similarity=0.046 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLR-PDNC 509 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~ 509 (605)
.|..|+..|.-.|+++.|+..-+.-+.....-|- .....++..+..+++-.|+++.|.+.|+..... |-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666777788999988766544332111110 223456778889999999999999999886542 211 1233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIK----MG-IVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
+-..|..+|.-..++++|+.++.+-+. .+ ..-....+..|+.+|-..|..++|+.+.+..++...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 445778888888889999998877543 11 122467888999999999999999999888876643
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=0.0037 Score=50.45 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=103.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
-|.+..-..|..+..+.|+..+|...|++....-...|...+..+..+....+++..|...+++..+..+ .+-.||..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p-a~r~pd~~- 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP-AFRSPDGH- 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-ccCCCCch-
Confidence 4666667778888899999999999999988866677888888888888899999999999998877553 22345443
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
..+.+.+...|++..|+.-|+.+.. ..|+...--.....+.++|+.+++..-+...
T Consensus 164 -Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 -LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred -HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3567788889999999999999988 6677775555666677788777776654443
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=0.00023 Score=67.44 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY 485 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 485 (605)
.......|++++|+..|+++++.+ +.+...+..++.++...|++++|+..+++++... +.+...|..++.+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-----P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-----PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHH
Confidence 344556677777777777777665 4456667777777777777777777777777653 3455666677777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036303 486 DGQILKASKLFSDMRSDNLRPDNCTYTTML 515 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (605)
.|++++|+..|+++++ +.|+......++
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 7777777777777776 556555444443
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.98 E-value=0.00015 Score=64.69 Aligned_cols=103 Identities=17% Similarity=0.051 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCc-cHHHHH
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN----CTYTTMLRGLLRAKRMLDVMMLLADMIKM-GIVP-DAVINQ 547 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~ 547 (605)
..|..........|++++|+..|+.+++ ..|+. ..+..+..+|...|++++|...|+++++. ...| ....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3454444444667999999999999998 45654 46778889999999999999999999853 2222 377788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.++.++...|++++|..+++++.+..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 8899999999999999999999999998663
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.96 E-value=0.00029 Score=59.01 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP--DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
...|..++..+...|++++|+..|+++......| ...++..+..++...|++++|+..++++++ +.| ....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 4455666677777788888888888877632222 123677777778888888888888888776 334 35556666
Q ss_pred HHHHH-------hcCChh-------HHHHHHHHHHhcCCCCC
Q 036303 550 VRGYQ-------ENGDLK-------SAFRCSEFLKESRIGSS 577 (605)
Q Consensus 550 ~~~~~-------~~g~~~-------~A~~~~~~~~~~~~~~~ 577 (605)
+.++. +.|+++ +|..+++++...+|++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 66666 777766 66666777777777654
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=0.0014 Score=58.16 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=34.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAI---QACNALLNGLIKKGKFDSVWEFYEEMVLCG 114 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (605)
++..+...+..+.+.|++++|...|+++. .|.+. .+...++.++.+.+++++|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44445555555666666666666666551 11111 122345555566666666666666666553
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00017 Score=53.71 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLL 519 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (605)
++..+...|++++|...+++..... +.+...+..+..++...|++++|.+.+++..... +.+...+..+...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 3444444555555555555544432 2222344444555555555555555555554421 112234445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 036303 520 RAKRMLDVMMLLADMIK 536 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~ 536 (605)
..|++++|...+...++
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 55555555555555443
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.92 E-value=0.00061 Score=57.26 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=65.3
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE----VLP-AIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTY 122 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 122 (605)
.+.....+..++..+...|++++|...|+++. .++ ....+..++..+.+.|++++|...+++.....+ .+...+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHH
Confidence 33455567888888888899999999888762 222 135778888888888889999888888887642 255666
Q ss_pred HHHHHHHHccCChhHHH
Q 036303 123 GVLIDCCCGQGDVMKAL 139 (605)
Q Consensus 123 ~~l~~~~~~~g~~~~a~ 139 (605)
..+..++...|+...+.
T Consensus 110 ~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHcCChHhHh
Confidence 67777777777654443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=5.8e-05 Score=54.45 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 413 GNMKETLRLYKEMLEAKIT-PSVFTVSSLIHGLFKNGRISNALNFFLE 459 (605)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (605)
|+++.|+.+++++.+.... ++...+..++.++.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444443211 1222333344444444444444444444
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.86 E-value=0.0012 Score=50.59 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPS--VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA 482 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (605)
+..++-..|+.++|+.+|++.+..|.... ...+..+..++...|++++|+.++++.....++..... .....+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--ALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH--HHHHHHHHH
Confidence 44455566666666666666666654433 23445556666666666666666666665432111111 111122334
Q ss_pred HHccCCHHHHHHHHHHHH
Q 036303 483 LCYDGQILKASKLFSDMR 500 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~ 500 (605)
+...|+.++|++.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555666666666665544
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00043 Score=63.12 Aligned_cols=128 Identities=11% Similarity=0.084 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHH
Q 036303 402 FTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK-NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480 (605)
Q Consensus 402 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (605)
|..++....+.+..+.|..+|.+..+.+ ..+..+|...+..-.+ .++.+.|.++|+..++.. +.+...|...+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~~~~~~Y~ 77 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-HHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHH
Confidence 4444444444444555555555554322 2334444444443223 233333555555555442 33444444445
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRPDN---CTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+...++.+.|..+|++.+.. +.++. ..|...++--.+.|+++.+..+.+++.+
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555442 21111 1444444444444555554444444443
No 175
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.84 E-value=0.0012 Score=57.02 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=46.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKIE-----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGL 115 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 115 (605)
.++..+...+..+...|++.+|...|+.+. .+-...+...++.++.+.|+++.|...+++.++.-+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 355667777888888888888888888772 222346677778888888888888888888877633
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.0046 Score=54.91 Aligned_cols=178 Identities=9% Similarity=-0.002 Sum_probs=98.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 036303 370 LIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVV---FTALIDGLSKDGNMKETLRLYKEMLEAKITPSVF--TVSSLIHGL 444 (605)
Q Consensus 370 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 444 (605)
....+...|++++|.+.|+.+......+ ... ...++.++.+.+++++|...+++.++........ ++..++.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444555677777777777766652221 111 1334555667777777777777776653211111 122222111
Q ss_pred Hhc------------------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 036303 445 FKN------------------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP 506 (605)
Q Consensus 445 ~~~------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (605)
... ....+|+..|++.++..+ .+.-..+|...+..+.+. .
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP-------------------~S~ya~~A~~rl~~l~~~---l 174 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP-------------------NSQYTTDATKRLVFLKDR---L 174 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc-------------------CChhHHHHHHHHHHHHHH---H
Confidence 111 112345566666666542 222234444444444320 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMIK-MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
-... ..+..-|.+.|.+..|+.-++.+++ ..-.| ..+.+..++.+|.+.|..++|..+...+..
T Consensus 175 a~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 175 AKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1111 2455667888889889888888885 22222 477788888999999999999888776643
No 177
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.82 E-value=3.8e-05 Score=44.40 Aligned_cols=31 Identities=42% Similarity=0.826 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 157 YTILIHGLCNENKMVEAESMFRSMRECGVVP 187 (605)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 187 (605)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3444444444444444444444444444333
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.81 E-value=0.0017 Score=64.40 Aligned_cols=139 Identities=7% Similarity=0.017 Sum_probs=83.4
Q ss_pred CCCHhhHHHHHHHHH--hc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhh
Q 036303 396 VPDVVVFTALIDGLS--KD---GNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN--------GRISNALNFFLEKTD 462 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 462 (605)
+.+...|...+++.. .. ++...|..+|++.++.+ |.....+..+..++... .+...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 445555555555532 22 22556666777776654 33334444433333211 122333343333322
Q ss_pred ccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 463 KTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
... .+.++..+..+.......|++++|...++++.+ +.|+...|..+...+...|+.++|...++++.. +.|.
T Consensus 413 l~~---~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 413 LPE---LNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred ccc---CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 110 133456666666666677899999999999888 557777888888888889999999999988887 4454
No 179
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.80 E-value=0.03 Score=52.11 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 365 VTFSSLIDGQCKAGNIDAAMGLYTEMVIKS-LVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG 443 (605)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (605)
.+|...+..-.+..-.+.|..+|.++.+.+ +.+++..+++++..++ .|+...|..+|+.-+..- +.+..-....+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 345556666666777888888888888887 4567777777777554 477888888888766542 3333334455666
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLL 519 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (605)
+...++-+.|..+|+..+.+. ..+ ...|..++..-..-|+...+..+-+++.+ ..|...+......-|.
T Consensus 476 Li~inde~naraLFetsv~r~-----~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVERL-----EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHH-----HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 777888888888888776653 222 45677888877888888888888888877 5566555444444443
No 180
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.80 E-value=4.7e-05 Score=44.00 Aligned_cols=33 Identities=48% Similarity=0.984 Sum_probs=26.3
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 036303 191 TYNALMDGYCKVADVNRALEFYHEMLHHNLQPN 223 (605)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 223 (605)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888887777776
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.78 E-value=9.5e-05 Score=51.70 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=48.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 515 LRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
...|.+.+++++|.+.+++++.. .| ++..+...+.++.+.|++++|.+.++++.+.+|++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34677788888888888888873 44 577778888888888888888888888888888544
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.00064 Score=62.00 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 365 VTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK-DGNMKETLRLYKEMLEAKITPSVFTVSSLIHG 443 (605)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (605)
.+|..++....+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|..+|+..++. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888899999999999999999998553 3345566655555333 56777799999999986 47788889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCcc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPN---HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
+.+.|+.+.|..+|++.+... .++ ...|...+..-.+.|+.+.+.++.+++.+ ..|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 999999999999999999863 333 35899999999999999999999999998 556655555555544
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.74 E-value=0.00067 Score=56.79 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 512 (605)
...+..++..+...|++++|+..|++++..... ......++..+..++...|++++|++.++++.+ +.|+ ..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHH
Confidence 344556666667777777777777777654211 011234667777777788888888888887776 3443 33555
Q ss_pred HHHHHHH-------hcCCHHHHHHHHHHH
Q 036303 513 TMLRGLL-------RAKRMLDVMMLLADM 534 (605)
Q Consensus 513 ~l~~~~~-------~~g~~~~A~~~~~~~ 534 (605)
.+...+. ..|++++|...+++.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555555 667777555555443
No 184
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.73 E-value=6.4e-05 Score=43.04 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 157 YTILIHGLCNENKMVEAESMFRSMRECGV 185 (605)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (605)
|+.++.+|.+.|+++.|.++|+.|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333333333333333333333333333
No 185
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.71 E-value=0.043 Score=51.25 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=73.8
Q ss_pred HHhcCC-HHHHHHHHHHhhhccCCCCCCccHHHHHHHH----HHHHcc---CCHHHHHHHHHHHHhCCCCCC----HHHH
Q 036303 444 LFKNGR-ISNALNFFLEKTDKTDGGYCSPNHVLYAAII----QALCYD---GQILKASKLFSDMRSDNLRPD----NCTY 511 (605)
Q Consensus 444 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~~~~~~~~~~~~p~----~~~~ 511 (605)
+.+.|. -+.|+++++.++.-. +-|...-+.+. .+|.+. ..+.+-.++-+-+.+.|+.|- ...-
T Consensus 389 lW~~g~~dekalnLLk~il~ft-----~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-----NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 455565 777888888887742 23333332222 122211 123333344344445677663 2334
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 512 TTMLRG--LLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 512 ~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
+-|.+| +...|++.++.-.-.-..+ +.|++.+|+.++-++....++++|..++..+
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 444443 4578999998776665555 7889999999999999999999998877665
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.69 E-value=0.00083 Score=63.66 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=83.4
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 036303 188 NLYTYNALMDGYCKVADVNRALEFYHEMLHH--NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCL 265 (605)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 265 (605)
+......++..+....+++.+..++.+.... ....-..|...+++.|...|..+.+..+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5555666666666667777777777777655 22223455567778888888888888888777777888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 036303 266 IDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (605)
+..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888877776666555555655555555544
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.012 Score=50.40 Aligned_cols=138 Identities=13% Similarity=0.137 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA-----KITPSVFTVSSL 440 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l 440 (605)
..+.++.++.-.|.+.-...++.++++...+.++.....+++.-.+.||.+.|...|+...+. ++.....+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344556666666777777777777777765667777777777777788888888877765443 223333344444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCT 510 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (605)
...+.-++++.+|...+.++.... +.++...|.-.-+..-.|+..+|++.++.|.. ..|.+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-----~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-----PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-----CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 455666778888888888887764 44555555555556667888889999988887 4555443
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00023 Score=48.27 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=21.6
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 482 ALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
.+...|++++|++.|+++++ ..|+ ...+..+..++...|++++|...+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444 2232 2244444444444444444444444444
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.069 Score=52.64 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=104.4
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 116 VADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILI----------HGLCNENKMVEAESMFRSMRECGV 185 (605)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~~~~~~~ 185 (605)
.|.+..|..+.......-.++.|+..|-+.... +.......|- ..-.--|++++|.+++-++-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 355666766666666555666666665554332 1111111111 11122366777777766655432
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 036303 186 VPNLYTYNALMDGYCKVADVNRALEFYHEMLHH-NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNC 264 (605)
Q Consensus 186 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 264 (605)
..+..+.+.|++-.+.++++.--.. ....-...+..+...++....++.|.+.+...... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 2345566667776666665431110 00112345666666677767777777766554321 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD 344 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (605)
.+.++.+..++++-..+...+ +-+....-.+..++.+.|.-++|.+.+-+. +. | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHH
Confidence 455555555555554444433 334455556666777777776666554332 11 1 123445556666
Q ss_pred HHHHHHHHHH
Q 036303 345 MEKALSVCSQ 354 (605)
Q Consensus 345 ~~~a~~~~~~ 354 (605)
|.+|.++-++
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 6666665443
No 190
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.68 E-value=9.2e-05 Score=42.37 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=18.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRP 506 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (605)
+|+.++.+|.+.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.00097 Score=63.19 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=82.0
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 036303 116 VADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK--GIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN 193 (605)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 193 (605)
+.+......+++.+....+++.+..++-+.... ....-..+..++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 335556666667676667777777777776654 122223455677777777777777777777777777777777777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV 237 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (605)
.++..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776665555555555555555443
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.65 E-value=0.00059 Score=50.01 Aligned_cols=75 Identities=20% Similarity=0.414 Sum_probs=39.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGI-EPTVVIYTILIHGLCNEN--------KMVEAESMFRSMRECGVVPNLYTYNALM 196 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 196 (605)
|..+...+++...-.+|+.+++.|+ -|++.+|+.++....+.. ++-+.+.++++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 455555555555444321 2334555666666666666666666666
Q ss_pred HHHh
Q 036303 197 DGYC 200 (605)
Q Consensus 197 ~~~~ 200 (605)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.0042 Score=47.65 Aligned_cols=92 Identities=25% Similarity=0.272 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 036303 370 LIDGQCKAGNIDAAMGLYTEMVIKSLVPD--VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP---SVFTVSSLIHGL 444 (605)
Q Consensus 370 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 444 (605)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++..... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 44556667777777777777777665433 2345556666777777777777777776642 11 222233334456
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 036303 445 FKNGRISNALNFFLEKTD 462 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~ 462 (605)
...|+.++|++.+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 677777777777766543
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0041 Score=54.89 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCC
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG---QILKASKLFSDMRSDNLRPD 507 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~ 507 (605)
|.|...|..|+..|...|+.+.|..-|.+..+.. ++++..+..+..++..+. ...++..+|++++. ..|+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~ 225 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPA 225 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCc
Confidence 5566666666666666666666666666666643 344555555555544322 34667777777776 3444
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 508 NC-TYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 508 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
.. ....|...+...|++.+|...|+.|++.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 33 5555555666777777777777777753
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.61 E-value=0.00033 Score=48.24 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAK-RMLDVMMLLADMIK 536 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 536 (605)
.|..++..+...|++++|+..|+++++ +.|+. ..|..+..++...| ++++|++.+++.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444455555555555555444 23332 24444444444444 35555555554443
No 196
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.00068 Score=58.86 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=83.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCc-cHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN----CTYTTMLRGLLRAKRMLDVMMLLADMIK-MGIVP-DAVINQV 548 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~ 548 (605)
.|+.-+ .+...|++..|...|...++. .|+. ..+-.|..+++..|++++|..+|..+.+ .+-.| -++.+..
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 465544 456788899999999999983 3432 2455789999999999999999999985 33334 3789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
|+.+..+.|+.++|..+|+.+.+..|+.+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999997765
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.58 E-value=0.00027 Score=48.49 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
...+..++.+|.+.|++++|.++++++..
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333444444444444444444444443
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.58 E-value=0.0012 Score=60.10 Aligned_cols=285 Identities=15% Similarity=0.085 Sum_probs=152.8
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH--HC--CC-CCCcccHHHHHH
Q 036303 127 DCCCGQGDVMKALNLFDEMIDKGIEPTV----VIYTILIHGLCNENKMVEAESMFRSMR--EC--GV-VPNLYTYNALMD 197 (605)
Q Consensus 127 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~~-~p~~~~~~~l~~ 197 (605)
.-+++.|+......+|+..++.|.+ |. .+|..|..+|...+++++|+++...=+ .. |- .-...+-..|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3467888888888888888887643 43 356667777777777888877654311 11 10 012223334555
Q ss_pred HHhccCChHHHHHHHHHHHh----CCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 036303 198 GYCKVADVNRALEFYHEMLH----HNL-QPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA 272 (605)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (605)
.+--.|.+++|+-...+-+. .|- ......+..+...|...|..-....- .+.|-.+.. + .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~e-v----------~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAE-V----------T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHH-H----------H
Confidence 55555666666654433221 110 11233444455555444321100000 000000000 0 0
Q ss_pred CCHHHHHHHHHHH----HhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhc
Q 036303 273 GNLFEAMSLCSEM----EKFEI-SPDVFTYNILIKGLCGVGQLEGAEGLLQKMY----KEGIL-ANVVTYNSLIDGYCKE 342 (605)
Q Consensus 273 ~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~ 342 (605)
..++.|.+.|.+= .+.|- -..-..|..+...|.-.|+++.|+...+.=. +-|-. .....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 0123333333321 11110 0122456666777777888888886654322 22211 1234567778888888
Q ss_pred CCHHHHHHHHHHHhhC----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhc
Q 036303 343 GDMEKALSVCSQMTEK----GV-EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK-----SLVPDVVVFTALIDGLSKD 412 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 412 (605)
|+++.|.+.|+..... |- .....+...|...|.-..+++.|+.++.+-+.. ...-....+.+|..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 8888888888765432 21 122344556777777778888888877654422 1122456777888888888
Q ss_pred CCHHHHHHHHHHHHH
Q 036303 413 GNMKETLRLYKEMLE 427 (605)
Q Consensus 413 g~~~~a~~~~~~~~~ 427 (605)
|..+.|+.+.+..++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888887776554
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.00032 Score=48.12 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=28.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 96 KKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
+.|++++|+++|+++....+. +...+..++.+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455555555555555554322 4555555555555555555555555555554
No 200
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0017 Score=47.69 Aligned_cols=79 Identities=13% Similarity=0.364 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHccC--------ChhHHHHHHHHHHhCCCCCCHHHHH
Q 036303 88 NALLNGLIKKGKFDSVWEFYEEMVLCGL-VADVVTYGVLIDCCCGQG--------DVMKALNLFDEMIDKGIEPTVVIYT 158 (605)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (605)
...+..+...+++...-.+|+.+.+.|+ -|+..+|+.++...++.. .+-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888899999999998888 788899999888776542 3446788899999989999999999
Q ss_pred HHHHHHHh
Q 036303 159 ILIHGLCN 166 (605)
Q Consensus 159 ~l~~~~~~ 166 (605)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887664
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.47 E-value=0.0017 Score=51.96 Aligned_cols=94 Identities=15% Similarity=0.066 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
..+..+.-+...|++++|..+|+-+ -.+.+...|..|..++...+++++|+..|......++ .|+..+-....++..
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 4567777788889999999999876 4667778888888888899999999999988877654 366677778889999
Q ss_pred cCChhHHHHHHHHHHhC
Q 036303 132 QGDVMKALNLFDEMIDK 148 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~ 148 (605)
.|+.+.|+..|+.....
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999988874
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.47 E-value=0.033 Score=51.91 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036303 367 FSSLIDGQCKAGNIDAAMGLYTEMVIKS---LVPDVVVFTALIDGLSK---DGNMKETLRLYKEMLEAKITPSVFTVSSL 440 (605)
Q Consensus 367 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (605)
...++-+|....+++..+++.+.+.... +...+..-...+.++.+ .|+.++|..++..++.....++++++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3344445666677777777776666541 11122222233444445 66777777777665554446666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCT---YTTMLRG 517 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~ 517 (605)
+..|-.. |.+.. ..+ ....++|+..|.+.-+ +.|+... +..|+..
T Consensus 224 GRIyKD~---------~~~s~--------~~d-------------~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 224 GRIYKDL---------FLESN--------FTD-------------RESLDKAIEWYRKGFE--IEPDYYSGINAATLLML 271 (374)
T ss_pred HHHHHHH---------HHHcC--------ccc-------------hHHHHHHHHHHHHHHc--CCccccchHHHHHHHHH
Confidence 6555321 11100 001 1125677777777665 4454332 2222222
Q ss_pred HHhc-CCHHHHHHHH---HHHH-HCCC-C--ccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 518 LLRA-KRMLDVMMLL---ADMI-KMGI-V--PDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 518 ~~~~-g~~~~A~~~~---~~~~-~~~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.... ..-.+..++. ..++ +.|. . .+-..+..++.+..-.|++++|.++++++.+..|+...
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 2111 0111222222 1111 2332 2 24455567788888888888888888888888765443
No 203
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.43 E-value=0.14 Score=49.96 Aligned_cols=187 Identities=10% Similarity=0.064 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 036303 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDG 408 (605)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (605)
..+|...+.--...|+.+.+.-+|++..-- +..-...|...+.-....|+.+-|..++....+-..+..+.+-..-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345666666667777777777777766542 1112334444444444557777776666555443322222211111112
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHhhhccCCCCCCccHH--HHHHHHH-H
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNAL---NFFLEKTDKTDGGYCSPNHV--LYAAIIQ-A 482 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~--~~~~l~~-~ 482 (605)
....|++..|..+++.+.+.- +.-..+-..-+....+.|..+.+. .++........ .+... .+....+ .
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~----~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE----NNGILEKLYVKFARLR 450 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc----CcchhHHHHHHHHHHH
Confidence 344577888888888777653 222223333334455666766666 33333332211 11111 1111111 1
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (605)
+.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23456778888888888762 3444556777777665444
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0037 Score=55.87 Aligned_cols=89 Identities=9% Similarity=0.084 Sum_probs=44.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPS---VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD 486 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (605)
.+.|++++|...|+.+++.. |.+ ..++..++.+|...|++++|+..|..+++.++.+. ....++..++.++...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~--~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP--KAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--chhHHHHHHHHHHHHc
Confidence 44455666666666555542 111 23445555555555666666666655555443221 1122333344445555
Q ss_pred CCHHHHHHHHHHHHh
Q 036303 487 GQILKASKLFSDMRS 501 (605)
Q Consensus 487 g~~~~A~~~~~~~~~ 501 (605)
|+.++|.++|+++++
T Consensus 231 g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 231 GDTAKAKAVYQQVIK 245 (263)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555666666555555
No 205
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.38 E-value=0.12 Score=48.34 Aligned_cols=450 Identities=15% Similarity=0.148 Sum_probs=214.5
Q ss_pred HHhcCChHHHHHHHHhcC----CCCC---HH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH--HHHc
Q 036303 62 FSEMGHIEEALWVYRKIE----VLPA---IQ-ACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLID--CCCG 131 (605)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~----~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 131 (605)
+.+++++.+|.++|.++- ..|. .+ .-+.++.+|... +.+.....+..+.+.. | ...|..+.. .+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 567888888888887762 1111 11 223455555443 4555555554444432 1 222333332 2346
Q ss_pred cCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCcccHH
Q 036303 132 QGDVMKALNLFDEMIDK--GIEP------------TVVIYTILIHGLCNENKMVEAESMFRSMRECG----VVPNLYTYN 193 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~ 193 (605)
.+++.+|.+.+....++ +..+ |...=+..+.++...|++.+++.+++++...= ..-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888887776654 2221 11122455667778888888888887776542 224666777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHN-LQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA 272 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (605)
.++-.+.++ +|-++.+.. ...-+. |..++..|-+.= ..++...=..+.|.......++....-.
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlfi~ 236 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLFIV 236 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence 655444332 233332210 011111 222222222110 0000000001122222222232222111
Q ss_pred --CCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCH
Q 036303 273 --GNLFEAMSLCSEMEKFEISPDVF-TYNILIKGLCGVGQLEGAEGLLQKMYKEGIL----ANVVTYNSLIDGYCKEGDM 345 (605)
Q Consensus 273 --~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 345 (605)
.+..--+++++.....-+.|+.. +...+...+.. +.+++..+.+.+....+. .-..++..++....+.++.
T Consensus 237 p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T 314 (549)
T PF07079_consen 237 PKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT 314 (549)
T ss_pred CHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11122223333333333334422 22223333322 444444444443332111 0123566666666777777
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHH-------HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHh-hHHHHH---HHHH
Q 036303 346 EKALSVCSQMTEKGVEPNVVTFS-------SLIDGQCK----AGNIDAAMGLYTEMVIKSLVPDVV-VFTALI---DGLS 410 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~~~~ 410 (605)
..|...+.-+...+ |+...-. .+-+..+. .-+...-+.+|+.....++ |.. .-..++ .-+-
T Consensus 315 ~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 315 EEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHH
Confidence 77777776665542 2222111 11111111 1123333455555554432 221 112222 2244
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhc---CCHHHHHHHHHHhhhccCCCCCCc----cHHHHHH
Q 036303 411 KDGN-MKETLRLYKEMLEAKITPSVFTVSSLIH----GLFKN---GRISNALNFFLEKTDKTDGGYCSP----NHVLYAA 478 (605)
Q Consensus 411 ~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~ 478 (605)
+.|. -++|+++++.+++-. +-|...-+.+.. +|.+. ..+.+-+.+ +..+... |++| +...-|.
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL-e~fi~e~---gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKL-EDFITEV---GLTPITISEEEIANF 465 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHhc---CCCcccccHHHHHHH
Confidence 5555 788899998888753 334444333322 12111 112222211 1122211 2232 2333444
Q ss_pred HHHH--HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 036303 479 IIQA--LCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQV 548 (605)
Q Consensus 479 l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (605)
+..+ +..+|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 5444 5578999999888877777 889999999998888899999999998763 5666666554
No 206
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.35 E-value=0.00033 Score=38.95 Aligned_cols=27 Identities=48% Similarity=0.955 Sum_probs=11.9
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHh
Q 036303 191 TYNALMDGYCKVADVNRALEFYHEMLH 217 (605)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (605)
+|+.++++|++.|++++|.++|++|.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 344444444444444444444444443
No 207
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.34 E-value=0.0003 Score=39.12 Aligned_cols=29 Identities=41% Similarity=0.702 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 156 IYTILIHGLCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (605)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555555443
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.33 E-value=0.027 Score=48.66 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA--DVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
.......+..+...|++.+|+..|+.+....+.. -......++.++.+.|+++.|...++..++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566667778888888888888887663321 2235566677777888888888888887776
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.09 Score=45.38 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-----HHHH
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVV-----FTAL 405 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l 405 (605)
..+.++..+.-.+.+.-...++.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..+... ....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34555666666777777777777777776666777777777777788888888888776665422223222 2233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcc
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKT 464 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (605)
...|...+++..|...+.++...+ +.++...+.-.-+..-.|+..+|++..+.+....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344566778888888888888765 4455555555555666788889999998888764
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=97.31 E-value=0.0034 Score=50.23 Aligned_cols=92 Identities=13% Similarity=-0.011 Sum_probs=65.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENG 557 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 557 (605)
....-+...|++++|..+|+-+...+. -+...|..|..+|-..+++++|+..+..+...+ ..|+......+.+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 334445677888888888887766321 244456667667777788888888888776544 236666777888888888
Q ss_pred ChhHHHHHHHHHHh
Q 036303 558 DLKSAFRCSEFLKE 571 (605)
Q Consensus 558 ~~~~A~~~~~~~~~ 571 (605)
+.+.|+..|+.+.+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888888877
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.012 Score=47.79 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=36.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCccHHH
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMI-----KMGIVPDAVI 545 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 545 (605)
..++..+...|++++|+.+.+++.. ..|. ...|..++.+|...|+..+|.+.|+++. +.|+.|++.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555566677777777766666 3443 3366666677777777777776666653 2466665544
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.01 Score=54.66 Aligned_cols=99 Identities=6% Similarity=-0.079 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.++.++..++.+.+++.+|++...+.++.+ ++|...+-.-..+|...|+++.|+..|+++++ +.| |..+-..++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456678888999999999999999999842 33455777888899999999999999999998 667 56666777776
Q ss_pred HHhcCChhHH-HHHHHHHHhcCCC
Q 036303 553 YQENGDLKSA-FRCSEFLKESRIG 575 (605)
Q Consensus 553 ~~~~g~~~~A-~~~~~~~~~~~~~ 575 (605)
-.+..++.+. .+.|..|...-+.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 6666665555 6688888876543
No 213
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.23 E-value=0.12 Score=44.91 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=53.5
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 036303 49 KFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYG 123 (605)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (605)
..++..+..-+..-.+.|++++|.+.|+.+. .+-...+...++.++.+.++++.|+..+++..+.-+......|-
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3456667777777777888888888888772 22234566667777778888888888888877764443333444
Q ss_pred HHHHHHH
Q 036303 124 VLIDCCC 130 (605)
Q Consensus 124 ~l~~~~~ 130 (605)
..+.+++
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 4444443
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.21 E-value=0.0017 Score=46.03 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKM----GIV-PD-AVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
++..+..+|...|++++|+..++++++. |-. |+ ..++..++.+|...|++++|+.+++++.+.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777777888888888888888877642 211 22 567778888888888888888888887653
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.20 E-value=0.11 Score=50.86 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccchhhhhhccccccccccccccC
Q 036303 559 LKSAFRCSEFLKESRIGSSETEGHTTRSFLGHLKPTVYKEQDLSIC 604 (605)
Q Consensus 559 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (605)
+.-++-.+++++.+.|+........+.-+-.+..+--.++++.-||
T Consensus 891 ~~l~~~~~d~l~~l~~pa~~q~~i~l~~l~~~a~~~~~~~~~~~l~ 936 (1081)
T KOG1538|consen 891 YRLARHAYDKLRGLYIPARFQKSIELGTLTIRAKPFHDSEELVPLC 936 (1081)
T ss_pred hhHHHHHhhhhhccCCccchhhhcccccceeccccCCCCccccccc
Confidence 3456667888888887766555555555444555556666655554
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.013 Score=53.84 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=95.9
Q ss_pred hHhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCC
Q 036303 4 VLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVL 81 (605)
Q Consensus 4 ~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 81 (605)
.++..|+|..|..-|+..+..+......+..-.....++ -...+..++-++.+.+++..|+...+++ ..+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~--------k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEAL--------KLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHH--------HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 678899999999999998876554444433222333332 2235677888899999999999988887 467
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh-hHHHHHHHHHHhC
Q 036303 82 PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDV-MKALNLFDEMIDK 148 (605)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 148 (605)
+|+.+...-..++...|+++.|+..|+.+++..+. |-.+-..++.+-.+..+. ++..++|..|...
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888889999999999999999999999886422 445555555555444433 3446777777553
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.17 E-value=0.2 Score=46.85 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKG---VEPNVVTFSSLIDGQCK---AGNIDAAMGLYTEMVIKSLVPDVVVFT 403 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 403 (605)
.+...++-+|....+++..+++.+.+...- +......-...+-++.+ .|+.++|+.++..+......+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344455667999999999999999998761 11122223344555666 899999999999977666677888887
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHH
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQAL 483 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (605)
.++..|-.. | .+.+ ..+... .++|+..|.+.-.. .|+..+=-+++..+
T Consensus 222 L~GRIyKD~---------~---~~s~-~~d~~~-------------ldkAi~~Y~kgFe~------~~~~Y~GIN~AtLL 269 (374)
T PF13281_consen 222 LLGRIYKDL---------F---LESN-FTDRES-------------LDKAIEWYRKGFEI------EPDYYSGINAATLL 269 (374)
T ss_pred HHHHHHHHH---------H---HHcC-ccchHH-------------HHHHHHHHHHHHcC------CccccchHHHHHHH
Confidence 776655321 1 1111 112111 56666666665543 22221111111122
Q ss_pred HccCC----HHHHHHHH----HHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 484 CYDGQ----ILKASKLF----SDMRSDN---LRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 484 ~~~g~----~~~A~~~~----~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
...|. -.+..++- ..+.+.| -..+...+..++.++.-.|++++|.+..++|.+.
T Consensus 270 ~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 270 MLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22232 11222222 1111222 2234456667788888899999999999999874
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.16 E-value=0.009 Score=50.06 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=46.3
Q ss_pred CHHhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 036303 118 DVVTYGVLIDCCCG-----QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNE----------------NKMVEAESM 176 (605)
Q Consensus 118 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 176 (605)
+-.+|..++..+.+ .|.++=....+..|.+.|+..|..+|+.|+.++=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44455555555443 355555555566666666666666666666555431 123345555
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHhccC
Q 036303 177 FRSMRECGVVPNLYTYNALMDGYCKVA 203 (605)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~l~~~~~~~~ 203 (605)
+++|...|+-||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 555555555555555555555554433
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=97.15 E-value=0.031 Score=52.92 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 527 (605)
...+|.++.+.+++.. +.|+.+...++.+....++++.|...|+++.. +.||.. +|......+...|+.++|
T Consensus 319 ~~~~a~~~A~rAveld-----~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 319 AAQKALELLDYVSDIT-----TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHH
Confidence 3456667777776654 55666666777777777778888888888887 667655 666666667778888888
Q ss_pred HHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 528 MMLLADMIKMGIVPD---AVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 528 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
.+.++++++ +.|. ..+....++.|+..+ .++|.++|-+-
T Consensus 392 ~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 392 RICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 888888776 4453 444455555666655 56777765443
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.14 E-value=0.023 Score=44.51 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC--TYT 512 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~ 512 (605)
..+..-+....+.|++++|++.|+.+..+.+.+...+ .+--.++.+|.+.+++++|...+++.++ +.|+.. -|.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~--qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa 86 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAE--QAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccH--HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHH
Confidence 3344444555666777777777777766654433333 2334566667777777777777777766 344332 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
....++......+ ..+..+. +..-|. +....|+..|+.+.+.-|++.
T Consensus 87 ~Y~~gL~~~~~~~---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 87 YYMRGLSYYEQDE---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHhh---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 3333333222111 1222222 111122 124578889999999888865
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.09 E-value=0.016 Score=48.68 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 036303 472 NHVLYAAIIQALC-----YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRA----------------KRMLDVMML 530 (605)
Q Consensus 472 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~ 530 (605)
+-.+|..++..|. +.|..+=....+++|.+.|+.-|..+|+.|++.+=+. .+-+-|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 3444444444444 3455666666677777777777777777777665421 234567888
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCC----hhHHHHHHHHHHhcCCCCCC
Q 036303 531 LADMIKMGIVPDAVINQVMVRGYQENGD----LKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~ 578 (605)
+++|...|+.||.+++..+.+++.+.+. +..-.-++-+....+|-..|
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~plp 177 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPWPLP 177 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 8888888888888888888888877653 33333466667777765544
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.05 E-value=0.25 Score=45.40 Aligned_cols=125 Identities=19% Similarity=0.177 Sum_probs=55.6
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH--HHHccCChhHHHHHHHHHHhCCCCCCHHH--HHHH
Q 036303 87 CNALLNGLI--KKGKFDSVWEFYEEMVLCGLVADVVTYGVLID--CCCGQGDVMKALNLFDEMIDKGIEPTVVI--YTIL 160 (605)
Q Consensus 87 ~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l 160 (605)
|..|..+++ ..|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 344443333 245555555555444322 2233333333332 223346666666666666542 11111 1112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH
Q 036303 161 IHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEML 216 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 216 (605)
.-...+.|..+.|..+-+..-..-+. -...+...+...+..|+++.|+++.+.-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 22223445555555555554443211 23344555555566666666666555443
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.00 E-value=0.021 Score=44.67 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=64.0
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTY 122 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 122 (605)
+..++..+..-+....+.|++++|.+.|+.+. .+-...+...++.++.+.++++.|...+++.++..+......|
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 45577788888888999999999999999883 2234567788899999999999999999999988655434445
Q ss_pred HHHHHHHHc
Q 036303 123 GVLIDCCCG 131 (605)
Q Consensus 123 ~~l~~~~~~ 131 (605)
-..+.+++.
T Consensus 86 a~Y~~gL~~ 94 (142)
T PF13512_consen 86 AYYMRGLSY 94 (142)
T ss_pred HHHHHHHHH
Confidence 555554443
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.00 E-value=0.005 Score=42.86 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 482 ALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.|...+++++|.+++++++. ..|+ ...+.....++...|++++|.+.+++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555555555555555 3333 22444455555555555555555555554
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.99 E-value=0.029 Score=50.57 Aligned_cols=130 Identities=17% Similarity=0.067 Sum_probs=55.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCHH-----
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGY-CSPNHVLYAAIIQALCYDGQILKASKLFSDMRS----DNLRPDNC----- 509 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~----- 509 (605)
+..+....+.++++++.|+.+.+-....+ .......+..+...|.+..|+++|.-...++.+ .++..=..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 34444444455555555555444221100 011123344555555555555555544444332 11111011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIK----MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
....+.-++...|.+-.|.+..+++.+ .|-.+ .......++++|...|+.+.|..-|+.+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122233344445555555554444332 23222 1334445566666666666665555544
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.96 E-value=0.059 Score=53.26 Aligned_cols=121 Identities=11% Similarity=0.035 Sum_probs=74.4
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCccHHHH-HHHHHHHHccCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHhcC
Q 036303 447 NGRISNALNFFLEKTDKTDGGYCSPNHVLY-AAIIQALCYDGQILKASKLFSDMRSD--NL-RPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p~~~~~~~l~~~~~~~g 522 (605)
....+.|.+++..+..++ |+...| -.-.+.+...|++++|++.|+++... .. +.....+..+...+.-..
T Consensus 246 ~~~~~~a~~lL~~~~~~y------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence 345667777777777664 343333 33445566677788888877765531 11 112335666777777788
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHH-HHHHHHHhcCCh-------hHHHHHHHHHHhcCC
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQ-VMVRGYQENGDL-------KSAFRCSEFLKESRI 574 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~~~~ 574 (605)
+|++|...+.++.+.. ..+..+|. ..+-++...|+. ++|...++++.....
T Consensus 320 ~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 8888888888887632 22333443 345566777777 777777777766544
No 227
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.93 E-value=0.34 Score=44.95 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCG 114 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (605)
|..++......|+.+-|..+++.=+. . ..-+..+.+.|+.+.| +.+..+.|
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~Ep~---~---~~qVplLL~m~e~e~A---L~kAi~Sg 53 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLELEPR---A---SKQVPLLLKMGEDELA---LNKAIESG 53 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHcCCC---h---HHHHHHHhcCCchHHH---HHHHHHcC
Confidence 56677777788888888887764432 1 1113344555665555 44555554
No 228
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.92 E-value=0.0024 Score=36.33 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 543 AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+.++..++.+|...|++++|++.++++.+++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578889999999999999999999999999874
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.89 E-value=0.0033 Score=44.49 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC-CCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY-CSPN-HVLYAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
+++.++..|...|++++|+..|+++++.....+ -.|+ ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455555555555555554443210000 0111 2334444555555555555555555443
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.87 E-value=0.024 Score=42.88 Aligned_cols=93 Identities=16% Similarity=0.037 Sum_probs=65.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhc
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD---AVINQVMVRGYQEN 556 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 556 (605)
.++...|+.+.|++.|.+.+. +-| ....|+.-.+++.-+|+.++|+.-+.++++..-.-+ ...|..-+..|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 356677888888888888776 443 455788888888888888888888888776432222 23444556677788
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 036303 557 GDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 557 g~~~~A~~~~~~~~~~~~~ 575 (605)
|+-+.|+.-|+.+.+++.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888888888888777654
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.86 E-value=0.14 Score=46.52 Aligned_cols=130 Identities=9% Similarity=-0.052 Sum_probs=56.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-----ccHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAK-----ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-----PNHV 474 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ 474 (605)
+..++...+.++++++.|+...+.. ......++..|...|....++++|.-+..++......-++. ....
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444445555555555555544321 01112244555555555555555555444433311110000 0111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRS----DNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
..-.+..++...|....|.+.-+++.+ .|-.|.. .....+.+.|...|+.+.|+.-++++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122233344455555555555544433 2322221 24445555666666666666555554
No 232
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.86 E-value=0.53 Score=46.13 Aligned_cols=410 Identities=14% Similarity=0.112 Sum_probs=218.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 036303 52 PSVFSTLIIAFSEMGHIEEALWVYRKI-EVLPAI-QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
...|+.++.--......+.+...+..+ ..-|.. -.|......-.+.|..+.+..+|++.+.. ++.+...|......+
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 344666665555555555555666655 233443 34555566666778888888888888764 555666666655544
Q ss_pred H-ccCChhHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh---cc-
Q 036303 130 C-GQGDVMKALNLFDEMIDK-GIE-PTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC---KV- 202 (605)
Q Consensus 130 ~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~- 202 (605)
. ..|+.+.....|+..... |.. .+...|...+..-..++++.....+++++++. | ...++..-..|. ..
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcC
Confidence 3 457777777888777665 322 24456777777777778888888888888774 2 222332222221 11
Q ss_pred -----CChHHHHHHHHHHHhC-CCC---CCcchHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 036303 203 -----ADVNRALEFYHEMLHH-NLQ---PNVVTFGVLMDGLC-KVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA 272 (605)
Q Consensus 203 -----~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (605)
-..+++.++-...... ..+ +.......-+.--. ..+..+.+......... ..-.++...
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s 268 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKS 268 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhh
Confidence 1122222222221110 000 00000000000000 00011111111111100 011122222
Q ss_pred CCHHHHHHHHHHHHhCC---C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 273 GNLFEAMSLCSEMEKFE---I----SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDM 345 (605)
Q Consensus 273 ~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 345 (605)
....+....|+.-.+.. + +++..+|...+.--...|+++...-+++.+.-.- ..=...|-..+......|+.
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCch
Confidence 33333444444433321 1 2345678888888889999999999998876421 11123344445555556888
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHH---HH
Q 036303 346 EKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV-VFTALIDGLSKDGNMKETL---RL 421 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~---~~ 421 (605)
+-|..++....+-.++..+.+-..-....-..|+++.|..+++.+...- |+.. .-..-+....+.|+.+.+. .+
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 8888888777665443333222222233445789999999999998874 4432 2222334456778888777 44
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC
Q 036303 422 YKEMLEAKITPSVFTVSSLIH-----GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG 487 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 487 (605)
+...... ..+......+.. .+.-.++.+.|..++.++.... +++...|..+++.....+
T Consensus 426 ~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-----~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 426 YSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-----PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-----CccHHHHHHHHHHHHhCC
Confidence 4443332 222222222222 1334678999999999998863 677777777777665544
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.83 E-value=0.33 Score=43.38 Aligned_cols=205 Identities=18% Similarity=0.113 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIK-SLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
..........+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344555555566666666666666655531 123344445555555566666667777776666543222 122222222
Q ss_pred -HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 036303 443 -GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLL 519 (605)
Q Consensus 443 -~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 519 (605)
.+...|+++.|...+.+.....+ . .......+......+...++.+.+...+.++.. ..++ ...+..+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDP-E-LNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-C-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHH
Confidence 56677777777777777644210 0 001222333333335566778888888887776 3333 456667777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 520 RAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..++++.|...+..... ..|+ ...+..+...+...|+++++...+++..+..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77778888888877776 3333 455556666666667788888888888877766
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.037 Score=48.44 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=61.0
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD-NLRPD-NCTYTTMLRGLLRA 521 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 521 (605)
+.+.|++.+|...|...++.++.+...|+...| |+.++...|++++|..+|..+.+. +-.|. +..+.-|..+..+.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 455677777777777777777666666665544 667777777777777777777662 11222 34566666677777
Q ss_pred CCHHHHHHHHHHHHH
Q 036303 522 KRMLDVMMLLADMIK 536 (605)
Q Consensus 522 g~~~~A~~~~~~~~~ 536 (605)
|+.++|..+|++.++
T Consensus 229 ~~~d~A~atl~qv~k 243 (262)
T COG1729 229 GNTDEACATLQQVIK 243 (262)
T ss_pred cCHHHHHHHHHHHHH
Confidence 777777777777775
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=96.77 E-value=0.061 Score=51.07 Aligned_cols=89 Identities=12% Similarity=-0.055 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
...+|.++.+++++.+ +-|+.....+..+....++++.|...|+++.. +.|+ +.+|...+....-+|+.++|...+
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567888889998843 33666777777777888889999999999998 6675 888999999999999999999999
Q ss_pred HHHHhcCCCCCCC
Q 036303 567 EFLKESRIGSSET 579 (605)
Q Consensus 567 ~~~~~~~~~~~~~ 579 (605)
+++.+++|..-..
T Consensus 396 ~~alrLsP~~~~~ 408 (458)
T PRK11906 396 DKSLQLEPRRRKA 408 (458)
T ss_pred HHHhccCchhhHH
Confidence 9999999976543
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.72 E-value=0.0093 Score=56.25 Aligned_cols=100 Identities=9% Similarity=-0.066 Sum_probs=73.3
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC----TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVI 545 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 545 (605)
+.+...++.+..+|...|++++|+..|+++++ +.|+.. .|..+..+|...|+.++|+..++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 55578899999999999999999999999998 677754 48899999999999999999999999842 22 1
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHhcCCC
Q 036303 546 NQVMVR--GYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 546 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
|..+.. .+....+.++..++++.+.+-+-.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 221111 122334445667777777776543
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.72 E-value=0.003 Score=35.92 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 543 AVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
+.+|..++.+|...|++++|+..++++.+.+|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357888999999999999999999999999986
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.43 Score=42.44 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=99.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD 486 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (605)
......|++.+|...|+...... +.+......++.+|...|+.+.|..++..+..... .........-+..+.+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ----DKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch----hhHHHHHHHHHHHHHHH
Confidence 34567788888888888888765 44566777888888899999999888887654321 11112222334445555
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCChhHHHH
Q 036303 487 GQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIV-PDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
....+...+-.+.-+ .| |...-..+...+...|+.++|.+.+-.+++.... -|...-..++..+.-.|.-+.+..
T Consensus 217 a~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 217 AATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred hcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 555555555555543 45 5556667777888899999998887777654322 256667777888877776555544
Q ss_pred HHH
Q 036303 565 CSE 567 (605)
Q Consensus 565 ~~~ 567 (605)
.++
T Consensus 294 ~~R 296 (304)
T COG3118 294 AYR 296 (304)
T ss_pred HHH
Confidence 443
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.95 Score=46.25 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=20.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 036303 165 CNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEF 211 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 211 (605)
....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence 3333344444444444444443 333334444444444444444333
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.64 E-value=0.0039 Score=37.99 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 544 VINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.++..++.+|.+.|++++|+++++++.+.+|++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 35666777777777777777777777777776654
No 241
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.59 E-value=0.36 Score=40.55 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=85.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 399 VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
+..|+.+.--+...|+++.|.+.|+...+.+..-+....|.-+ ++.--|++.-|.+-+...-...+ ..|=...|-.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~---~DPfR~LWLY 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDP---NDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCC---CChHHHHHHH
Confidence 3456666666677777888887777777765333333333322 23345677777666666555431 1121122211
Q ss_pred HHHHHHccCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-------HHHHHHHH
Q 036303 479 IIQALCYDGQILKASKLF-SDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-------AVINQVMV 550 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~ 550 (605)
+ --..-++.+|..-+ ++... .|..-|...+-.+. .|+..+ ..+++++... -..+ .++|..++
T Consensus 175 l---~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 175 L---NEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERLKAD-ATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred H---HHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHHHhh-ccchHHHHHHHHHHHHHHH
Confidence 1 11233566665544 33332 23344443333222 222221 2233333321 1111 45777888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 551 RGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
+-+...|+.++|...|+-+...+.-+.
T Consensus 245 K~~l~~G~~~~A~~LfKLaiannVynf 271 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANNVYNF 271 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHhHHHH
Confidence 888888888888888887777555433
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.36 Score=41.43 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036303 262 YNCLIDGHCKAGNLFEAMSLCSEMEKFE---ISPDVFTYNILIKGLCGVGQLEGAEGL 316 (605)
Q Consensus 262 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (605)
+...|-.|.-..++..|...++.-.+.+ -+-+..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344444555556666666666543321 122344455555544 33555554443
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.58 E-value=0.041 Score=52.06 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHH----HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV----LYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
+.+...++.++.+|.+.|++++|+..|++.+. +.|+.. +|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55677899999999999999999999999987 777743 5889999999999999999999999873
No 244
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=1.1 Score=45.31 Aligned_cols=346 Identities=12% Similarity=0.054 Sum_probs=178.2
Q ss_pred CCCCCCcccHH-----HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH--HHHHHHHHHHHHCCC
Q 036303 183 CGVVPNLYTYN-----ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL--RAAGNFFVHMAKFGV 255 (605)
Q Consensus 183 ~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 255 (605)
.|++.+..-|. .++.-+...+.+..|+++-.-+-..-... ...|......+.+..+. +.+.+.+++-.+...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 35555544443 35566667788888888876654321111 45666666666655321 222222222222211
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEIS----PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVT 331 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 331 (605)
.....|..+...-...|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+..+ .+...
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~ 580 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSS 580 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHH
Confidence 34456777777777889888888777542211100 01111223333344445554444444444332 01111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHC-CCCCCHhhHHHHHHHH
Q 036303 332 YNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEM-VIK-SLVPDVVVFTALIDGL 409 (605)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~~~~l~~~~ 409 (605)
+. ....+...|..+|.+..+.. +..+ +-..|....+...+-.+.-+- ... .+.+-.........++
T Consensus 581 l~------~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 581 LF------MTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred HH------HHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 11 11223345555665554431 1111 112222222222221111111 000 0111122223333444
Q ss_pred HhcCCHH---HH-------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 410 SKDGNMK---ET-------LRLYKEMLE-AKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 410 ~~~g~~~---~a-------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
.+..... +| +.+.+.+.. .+..-...+.+--+..+...|+..+|.++-.+.. -||-..|-.
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wL 720 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWL 720 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHH
Confidence 4433211 11 111122211 1323334455566667788899999998887764 567777777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGD 558 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 558 (605)
-+.+++..+++++-+++-+... .+..|.-.+.+|.+.|+.++|.+++-+.- +.. -.+.+|.+.|+
T Consensus 721 k~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~ 785 (829)
T KOG2280|consen 721 KLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGD 785 (829)
T ss_pred HHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhcc
Confidence 7888899999988777766543 25578888999999999999998865332 111 46778999999
Q ss_pred hhHHHHHHHH
Q 036303 559 LKSAFRCSEF 568 (605)
Q Consensus 559 ~~~A~~~~~~ 568 (605)
+.+|.+..-+
T Consensus 786 ~~eAad~A~~ 795 (829)
T KOG2280|consen 786 VKEAADLAAE 795 (829)
T ss_pred HHHHHHHHHH
Confidence 9999876443
No 245
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.31 Score=41.48 Aligned_cols=100 Identities=9% Similarity=-0.053 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHhC--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-----HHHH-HHHHHHHHh
Q 036303 487 GQILKASKLFSDMRSD--NLRP---DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-----AVIN-QVMVRGYQE 555 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~--~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~ 555 (605)
.+++.|+..|+.+-+. |-.. ....+.-+...-...+++.+|+.+|++.....+..+ ..-| ..-+-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 5677788888777652 1111 122444444545567899999999998876544332 2222 233334444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCccchhh
Q 036303 556 NGDLKSAFRCSEFLKESRIGSSETEGHTTRS 586 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 586 (605)
.+|.=.+...+++..+.+|....+....+..
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk 238 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLK 238 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 5888888999999999999888775544433
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.43 E-value=0.56 Score=40.91 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIKMGIVPD---AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
+..-|.+.|.+-.|..-++.|++. .+.+ ...+..+..+|.+.|-.++|.+.-+.+.. +.++++|.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~-N~p~s~~~ 240 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA-NYPDSQWY 240 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh-cCCCCcch
Confidence 345677889999999999999974 2222 55677788899999999999987665555 55556553
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.42 E-value=0.037 Score=44.96 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 122 YGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180 (605)
Q Consensus 122 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (605)
...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.++|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455555555555555555555543 234555555555555555555555555554
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.41 E-value=0.084 Score=40.06 Aligned_cols=93 Identities=13% Similarity=0.005 Sum_probs=64.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCH--HHHHHHHHHH
Q 036303 442 HGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD-NLRPDN--CTYTTMLRGL 518 (605)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~--~~~~~l~~~~ 518 (605)
.++...|+++.|++.|.+.+.. .+.+...||.-..++.-+|+.++|++-++++++. |-.... ..|..-...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 4566778888888888887765 3566777888888888888888888888888773 222111 1333344456
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 036303 519 LRAKRMLDVMMLLADMIKMGI 539 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~ 539 (605)
...|+.+.|..-|+.+.+.|.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 667888888888887777663
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=1.4 Score=45.15 Aligned_cols=225 Identities=12% Similarity=0.101 Sum_probs=144.2
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 036303 2 FYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIEVL 81 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 81 (605)
+.++...+++---..++.++...+...+..- . ++. .........+-....-+....+...++-|+.+.+.....
T Consensus 290 ~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~-~---vlt--sdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d 363 (933)
T KOG2114|consen 290 FKAYDLRNRYVLYSSVLEDLSDNLIEWSFDC-L---VLT--SDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLD 363 (933)
T ss_pred eehhhhcCcccchHHhHHHHHHHHHhcCCcE-E---EEe--cCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCC
Confidence 4566677777777777788877766665111 0 000 000111122334556677788889999999999887644
Q ss_pred CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 036303 82 PAI--QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTI 159 (605)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (605)
++. ......+..+.+.|++++|...|-+.+.. +.| ..++.-+....+...-..+++.+.+.|.. +..--..
T Consensus 364 ~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttl 436 (933)
T KOG2114|consen 364 EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTL 436 (933)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHH
Confidence 432 34455667778899999999988877654 333 23445556666777778888888888865 5566678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 036303 160 LIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGE 239 (605)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (605)
|+.+|.+.++.++..+..+.-. .|.. ..-....+..+.+.+-.++|.-+-.+... ...... -.+-..++
T Consensus 437 LLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~---ille~~~n 505 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLD---ILLEDLHN 505 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHH---HHHHHhcC
Confidence 9999999999988777666544 2211 12245566677777777777666554332 222222 23445788
Q ss_pred HHHHHHHHHHH
Q 036303 240 LRAAGNFFVHM 250 (605)
Q Consensus 240 ~~~a~~~~~~~ 250 (605)
+++|.+.+..+
T Consensus 506 y~eAl~yi~sl 516 (933)
T KOG2114|consen 506 YEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcC
Confidence 99999988776
No 250
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.39 E-value=1.2 Score=44.15 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=31.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036303 225 VTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK 287 (605)
Q Consensus 225 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 287 (605)
.+...+..-+.+...+..|-++|.++-. ...++..+...++|.+|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3444444444555566666666666643 12355666667777777776666544
No 251
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.39 E-value=0.055 Score=44.53 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=69.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPD------NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
+.-+...|++++|..-|..+++. -|. +..|..-..+..+.++++.|+.-..++++ +.| ....+..-+.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 34456778888888888888773 332 22455555566778888888888888887 445 36666677888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 553 YQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
|.+...+++|+.-|+++.+.+|....
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 88888889999888888888887653
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.52 Score=41.94 Aligned_cols=141 Identities=11% Similarity=0.029 Sum_probs=69.3
Q ss_pred HHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHH
Q 036303 61 AFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKA 138 (605)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 138 (605)
.....|++.+|..+|... ..+.+..+-..++.+|...|+.+.|..++..+...-..........-+..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345556666666666554 233344555556666666666666666666554331111111111223344444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcccHHHHHHHHhccCC
Q 036303 139 LNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMREC--GVVPNLYTYNALMDGYCKVAD 204 (605)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 204 (605)
..+-..+... +-|...-..+...+...|+.+.|.+.+-.+... |.. |...-..++..+.-.|.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 4444444432 225555555666666666666666555544433 222 34444555555555553
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.32 E-value=0.7 Score=44.34 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 438 SSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
..+..++.+.|+.++|++.+.++++..+ ...+......++.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p---~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFP---NLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCC---ccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444555555555555555555554321 0111223345555555555555555555554
No 254
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.99 E-value=1.5 Score=41.53 Aligned_cols=428 Identities=13% Similarity=0.113 Sum_probs=217.1
Q ss_pred HHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 70 EALWVYRKIE-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 70 ~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
+-+++=+++. .|.++.+|..|++-+..++..++..+++++|..- .+--+.+|...+..-....++.....+|.+.+..
T Consensus 27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 4446666774 6678899999999999999999999999999764 3334567887787777789999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHH-CCCCCCc-ccHHHHHHHH---hccCChH------HHHHH
Q 036303 149 GIEPTVVIYTILIHGLCNENKM------VEAESMFRSMRE-CGVVPNL-YTYNALMDGY---CKVADVN------RALEF 211 (605)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~---~~~~~~~------~a~~~ 211 (605)
..+...|...+.--.+.+.. -...+.|+-... .++.|-. ..|+..+..+ -..|.++ ...+.
T Consensus 106 --~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 --SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred --hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 34566777666554443321 112233333222 3444433 3455444433 2334433 34445
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--C
Q 036303 212 YHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF-PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK--F 288 (605)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 288 (605)
|.+++...+ .....+-. +++.-+.-+..+....+. ..... +..|...++++.. .
T Consensus 184 Y~ral~tP~----~nleklW~------dy~~fE~e~N~~TarKfvge~sp~-------------ym~ar~~yqe~~nlt~ 240 (660)
T COG5107 184 YMRALQTPM----GNLEKLWK------DYENFELELNKITARKFVGETSPI-------------YMSARQRYQEIQNLTR 240 (660)
T ss_pred HHHHHcCcc----ccHHHHHH------HHHHHHHHHHHHHHHHHhcccCHH-------------HHHHHHHHHHHHHHhc
Confidence 555554211 11111111 111111111111110000 00001 1222222222211 0
Q ss_pred CC----CCChhh-----------HHHHHHHHHh-----cCC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 289 EI----SPDVFT-----------YNILIKGLCG-----VGQ-L-EGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDME 346 (605)
Q Consensus 289 ~~----~~~~~~-----------~~~l~~~~~~-----~~~-~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 346 (605)
|. +.+..+ |...|.--.. .|+ . ...--++++.... +......|-.--..+...++-+
T Consensus 241 Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q 319 (660)
T COG5107 241 GLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQ 319 (660)
T ss_pred cccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHH
Confidence 10 001111 1111111100 011 1 1111122222221 1223333333333344455555
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------CC---------------CC
Q 036303 347 KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK--------------SL---------------VP 397 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~---------------~~ 397 (605)
.|.....+.... .|+. -..+...|....+.+.....|+..... +. .-
T Consensus 320 ~al~tv~rg~~~--spsL--~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k 395 (660)
T COG5107 320 KALKTVERGIEM--SPSL--TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINK 395 (660)
T ss_pred HHHHHHHhcccC--CCch--heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhh
Confidence 555554443332 2221 111222222222322222222221110 00 00
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH
Q 036303 398 DVVVFTALIDGLSKDGNMKETLRLYKEMLEAK-ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY 476 (605)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (605)
-...|...+....+..-.+.|..+|-++.+.+ +.++..++++++..+ ..|+...|.++|+--+... ||...|
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f------~d~~~y 468 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF------PDSTLY 468 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC------CCchHH
Confidence 12234445555556666788888888888877 566677777776654 4678888888888877753 443333
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 477 -AAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 477 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+-.+..+..-++-..|..+|+..++. +..+ ..+|..+++--..-|++..+..+=++|.+
T Consensus 469 ~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 469 KEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 45666777788888888888866652 2223 44788888877788888888777777765
No 255
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=0.67 Score=37.48 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=86.8
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---hHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIEV----LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV---TYG 123 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~ 123 (605)
+...|..-+ -+.+.|+.++|+..|..+.. .-.+-+.........+.|+...|...|.++-.....|... .-.
T Consensus 58 sgd~flaAL-~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAAL-KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHH-HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 334444333 24566888888888887731 1223344455566677888888888888887664444333 112
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 124 VLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 124 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (605)
.-.-.+...|.++......+.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 2223456788888888888877766545455566777778888888888888888887643
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.26 Score=42.21 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPD------VVVFTALIDGLSKDGNMKETLRLYKEML----EAKITPS 433 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~ 433 (605)
...|..-..+|...+++++|...+.+..+.. ..+ ...|...+-..-....+.++..++++.. +.| .|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spd 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPD 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccc
Confidence 3456666778888899999998888776321 111 1223333333334556677777777664 345 444
Q ss_pred HHHH--HHHHHHHHhcCCHHHHHHHHHHhhhccCCCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC
Q 036303 434 VFTV--SSLIHGLFKNGRISNALNFFLEKTDKTDGGY-CSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRP 506 (605)
Q Consensus 434 ~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p 506 (605)
.... ..... ..+.-++++|+.+|++.......++ ...-...+....+.+++...+.+|-..+.+-... .-.|
T Consensus 109 tAAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 109 TAAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred hHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 4332 22222 3456677888888887777533211 1111223444556667777777776666553321 1122
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCc-cHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 507 DN-CTYTTMLRGLLRAKRMLDVMMLLADMIKMG--IVP-DAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 507 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
+. ..|...+-.+....++..|...+...-+.+ ..+ +..+...|+.+| ..||.+++.++..
T Consensus 188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 22 134455555666778888888877654322 122 456666666655 5677777765543
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.87 E-value=0.28 Score=47.86 Aligned_cols=154 Identities=13% Similarity=0.158 Sum_probs=68.1
Q ss_pred HHhcCChHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHH
Q 036303 62 FSEMGHIEEALWVYR--KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKAL 139 (605)
Q Consensus 62 ~~~~g~~~~A~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 139 (605)
..-.|+++++.+..+ ++...-+......++..+.+.|..+.|+++-.. +. .-.....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHH
Confidence 444566666555544 111111133345555666666666666554322 11 1123344566666665
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 036303 140 NLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHN 219 (605)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (605)
++.+.. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 554332 2455666666666666666666666655432 4445555555555555555554444433
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 036303 220 LQPNVVTFGVLMDGLCKVGELRAAGNFFV 248 (605)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 248 (605)
-++....++.-.|+.++..+++.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 12233333334455555444443
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.87 E-value=0.022 Score=34.62 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
+..+...+.+.|++++|.++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555555555555555555544
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.84 E-value=0.015 Score=33.46 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
++..|+.+|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888888888888888888553
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.35 Score=43.49 Aligned_cols=156 Identities=13% Similarity=0.026 Sum_probs=107.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHhcCCH
Q 036303 305 CGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNV----VTFSSLIDGQCKAGNI 380 (605)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 380 (605)
...|+..+|-..++++.+. .+.|...++..=.+|.-.|+.+.-...++++... ..++. ..-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567778888888888775 4557778888888888899988888888888765 22333 2333444556678899
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 381 DAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS---VFTVSSLIHGLFKNGRISNALNFF 457 (605)
Q Consensus 381 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 457 (605)
++|.+.-++..+.+ +.|...-.+....+...|+.+++.++..+-...=-..+ ..-|-.....+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99998888887765 44666777778888888999999888766543210111 112333444556678899999999
Q ss_pred HHhhhc
Q 036303 458 LEKTDK 463 (605)
Q Consensus 458 ~~~~~~ 463 (605)
+.-+-+
T Consensus 271 D~ei~k 276 (491)
T KOG2610|consen 271 DREIWK 276 (491)
T ss_pred HHHHHH
Confidence 865543
No 261
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.76 E-value=0.019 Score=32.51 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 544 VINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
.+|..++.+|...|++++|...|+++.+.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46788999999999999999999999998884
No 262
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.74 E-value=0.32 Score=40.26 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=59.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 036303 442 HGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLR 520 (605)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~ 520 (605)
.-+...|++++|..-|..++..-+..........|..-..++.+.+.++.|+.-..++++ +.|+.. .+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 335567777777777777776532111112233455555667777888888888877777 555543 44444567777
Q ss_pred cCCHHHHHHHHHHHHH
Q 036303 521 AKRMLDVMMLLADMIK 536 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~ 536 (605)
..++++|++-++++++
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 7888888888888776
No 263
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.73 E-value=0.29 Score=38.05 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS-DNLRPDNCTYTTMLRGLL 519 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 519 (605)
+...|+...+.+++.+|+..|++..|+++.+...+ .+++.+..+|..|+.-+.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44677788888888888888888888888887766 355556667777776443
No 264
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.70 E-value=0.95 Score=38.18 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 85 QACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
.+||.+.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 44444444444555555555555555444
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=0.11 Score=42.82 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=65.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPDNCTY-----TTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGY 553 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 553 (605)
+...++..|++++|+..++..+. .|....+ ..|.+.....|.+++|+..++.....+ ..+.....-++++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHH
Confidence 44567788889999998888775 2322222 345566778899999998877544322 2345556778999
Q ss_pred HhcCChhHHHHHHHHHHhcC
Q 036303 554 QENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 554 ~~~g~~~~A~~~~~~~~~~~ 573 (605)
...|+.++|+..|+++.+.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999999887
No 266
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.66 E-value=1.9 Score=40.19 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (605)
.+.-+...|+...|.++-++. . -|+...|...+.+++..++|++-.++... +.++..|..++.+|.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s----------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS----------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----------CCCCCChHHHHHHHH
Confidence 334444555555555544333 1 24555555555566666666555443321 112244555555555
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
..|+..+|..++.++ + + ..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHH
Confidence 556666655555541 1 1 2233445555555555543
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.83 Score=36.97 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=97.6
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 036303 74 VYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV-TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEP 152 (605)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 152 (605)
.++.-........|..-+. +.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|
T Consensus 49 yw~~s~as~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 49 YWQTSRASKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred hhcccccccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 3444433444555554443 467788999999999999887653322 33444556778899999999999998763333
Q ss_pred CHH-HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhC
Q 036303 153 TVV-IY--TILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHH 218 (605)
Q Consensus 153 ~~~-~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (605)
-.. -. ..-...+...|.+++.....+-+...+-+-....-..|.-+-.+.|++.+|.+.|..+...
T Consensus 128 ~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 128 QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred chhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 322 11 1122345678999999888888776554434445566777888999999999999988764
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.43 Score=43.01 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=108.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH----HHHHHHHhcCCH
Q 036303 340 CKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFT----ALIDGLSKDGNM 415 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 415 (605)
...|+..+|-..++++++. .|.|...+...-.++...|+.+.-...++++... ..+|...|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567788888888888876 4567777777778888889888888888887754 233443333 233345678899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 036303 416 KETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKL 495 (605)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 495 (605)
++|.+.-++..+.+ +.|......+...+...|++.++.++..+....-..+.+... ..|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas-HNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS-HNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh-hhhHHHHHhhhcccchhHHHHH
Confidence 99999988888876 667777778888888889999999888765543221111111 1222334456677899999999
Q ss_pred HHHHH
Q 036303 496 FSDMR 500 (605)
Q Consensus 496 ~~~~~ 500 (605)
|++=+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 97633
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.53 E-value=0.015 Score=32.91 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHH
Q 036303 531 LADMIKMGIVP-DAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 531 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
++++++ +.| ++.+|..++.+|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455555 445 5888888888888888888875
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.51 E-value=1.6 Score=42.13 Aligned_cols=149 Identities=10% Similarity=0.096 Sum_probs=85.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (605)
++...-+..++..-++.-++..+. .||-.+.-.++ +--......++.+++++..+.|- ..+..-- .....|.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~g~ 245 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHHGH 245 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhcccc
Confidence 344444555666666666666654 23332221111 12234457788888888776531 1111000 0011111
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSVFTVSSLIHGLFKNGRISNALNFFL 458 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (605)
.++....+...+-..+-..+..+..+.|+.++|++.++++.+.... ....+...|+.++...+.+.++..++.
T Consensus 246 ------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 ------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred ------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1112222222233344456777788999999999999999875422 234477889999999999999999998
Q ss_pred Hhhh
Q 036303 459 EKTD 462 (605)
Q Consensus 459 ~~~~ 462 (605)
+.-+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 8643
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.44 E-value=1.8 Score=38.50 Aligned_cols=200 Identities=18% Similarity=0.107 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEK-GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALID 407 (605)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 407 (605)
..........+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555666666666665555431 122344445555555556666666666666666542222 111122222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHHHHHHHHHHH
Q 036303 408 -GLSKDGNMKETLRLYKEMLEAKI--TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHVLYAAIIQAL 483 (605)
Q Consensus 408 -~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 483 (605)
.+...|+++.+...+.+...... ......+......+...++.+.++..+.+..... +. ....+..+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 212 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-----PDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-----cccchHHHHHhhHHH
Confidence 56677777777777777655221 0123333334444566777788888887777653 22 355566677777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 484 CYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...++++.|...+..+.. ..|+ ...+..+...+...+..+++...+.+.+.
T Consensus 213 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 213 LKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777778888888887776 3444 33444555555566667888877777775
No 272
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.43 E-value=0.025 Score=31.68 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
++..++.++.+.|++++|.+.++++.+..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45678889999999999999999999988864
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.42 E-value=0.41 Score=46.72 Aligned_cols=158 Identities=14% Similarity=0.079 Sum_probs=76.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036303 93 GLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVE 172 (605)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (605)
...-+++++.+.++.+.-.-. +.-+....+.++..+-+.|-.+.|+++...-. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 334456666655555411100 01123445666666666676666666533321 12344556666666
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 173 AESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 173 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -+..|+-.|...|+.+.-.++.+....
T Consensus 337 A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 665443322 44567777777777777777776666532 244555556666666666666655554
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 253 FGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSE 284 (605)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 284 (605)
.| -++....++.-.|+.++..+++.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43 123333344445666666555544
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.41 E-value=2.1 Score=39.22 Aligned_cols=163 Identities=7% Similarity=-0.005 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHH
Q 036303 401 VFTALIDGLSKDGNMK---ETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYA 477 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (605)
++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+++.+.+.+++... .-....+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-----~~~e~~~~ 159 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-----DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-----ccccchHH
Confidence 4445556666555443 344444444332 22233444344555555667777777777777643 11222233
Q ss_pred HHHHHH---HccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH----HHHHhcCC------HHHHHHHHHHHHH---CCCC
Q 036303 478 AIIQAL---CYDGQILKASKLFSDMRSDNLRPDNC-TYTTML----RGLLRAKR------MLDVMMLLADMIK---MGIV 540 (605)
Q Consensus 478 ~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~----~~~~~~g~------~~~A~~~~~~~~~---~~~~ 540 (605)
..+..+ .. .....|...+..++...+.|... ....++ ......++ .+....+++...+ ..+.
T Consensus 160 ~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 333332 22 23345555555555433444432 111111 11112111 3333334443222 2222
Q ss_pred ccH-HHH----HHHHHHHHhcCChhHHHHHHHHHH
Q 036303 541 PDA-VIN----QVMVRGYQENGDLKSAFRCSEFLK 570 (605)
Q Consensus 541 ~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 570 (605)
+.. ... -.-+..+.+.++|++|..+|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 221 111 223556788999999999998665
No 275
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.41 E-value=2.6 Score=40.24 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=77.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036303 95 IKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAE 174 (605)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (605)
...|+.-.|-+-+...+.. .+.++.............|+++.+...+...... +.....+...+++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3457776665544444433 2223433333344566688888888887766543 2234566777888888889999998
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 036303 175 SMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHN 219 (605)
Q Consensus 175 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (605)
..-+.|....++ +...........-..|-++++.-.++++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888888876665 44444333334445677888888888877654
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.40 E-value=0.049 Score=48.77 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL 518 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (605)
+..|.++|.+++|+..|...+. ..| |++.+..-..+|.+...+..|+.-.+.++.. ... ...|..-+.+-
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHH
Confidence 5556677777777777766553 444 5666666666677766666666666665541 111 11333333333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
...|...+|.+-++..++ ++|+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHhhHHHHHHhHHHHHh--hCcc
Confidence 344566666666665555 4454
No 277
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.34 E-value=0.31 Score=37.88 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH
Q 036303 429 KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484 (605)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (605)
...|+..++.+++.+|+..|++..|+++.+...+.++ ++-+...|..++.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~---I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP---IPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888776 4555677777765443
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.08 E-value=2.7 Score=38.55 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 331 TYNSLIDGYCKEGDME---KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALID 407 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 407 (605)
++..++.+|...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+.+.+|+..-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 4566677777666544 4555555554442 223444545566666677888888888888776221 2223333333
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 036303 408 GL---SKDGNMKETLRLYKEMLEAKITPSV 434 (605)
Q Consensus 408 ~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (605)
.+ .. .....+...+..++...+.|..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 33 23 2345566666666554444444
No 279
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.07 E-value=4.1 Score=40.59 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCCHHH
Q 036303 342 EGDMEKALSVCSQMTEKGVEPNVVTFS-SLIDGQCKAGNIDAAMGLYTEMVIKS---LVPDVVVFTALIDGLSKDGNMKE 417 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 417 (605)
..+.+.|.+++..+... -|+...|. .-.+.+...|++++|++.|++..... .+.....+..++..+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34567777777777776 34444333 33456666788888888887655321 01123344455666677788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHhhh
Q 036303 418 TLRLYKEMLEAKITPSVFTVSSLIH-GLFKNGRI-------SNALNFFLEKTD 462 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~ 462 (605)
|...|..+.+.. ..+...|..+.. ++...|+. ++|.++|.++..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888887754 334444443333 34456666 677777766544
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.57 E-value=1.2 Score=37.27 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH--HH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV--VVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSVFTVS--SL 440 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~--~l 440 (605)
.+..+...|.+.|+.+.|++.|.++......+.. ..+..++......+++..+.....+....--. .+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3455566666666666666666666554333222 23445556666666666666666555432111 1111111 11
Q ss_pred --HHHHHhcCCHHHHHHHHHHhhhcc
Q 036303 441 --IHGLFKNGRISNALNFFLEKTDKT 464 (605)
Q Consensus 441 --~~~~~~~g~~~~A~~~~~~~~~~~ 464 (605)
+-.+...+++.+|-+.|-+.....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCcCC
Confidence 122345677777777777665543
No 281
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.44 E-value=7.3 Score=40.56 Aligned_cols=195 Identities=10% Similarity=0.024 Sum_probs=95.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC-----HhhHHHHHH--HHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 036303 375 CKAGNIDAAMGLYTEMVIKSL-VPD-----VVVFTALID--GLSKDGNMKETLRLYK--------EMLEAKITPSVFTVS 438 (605)
Q Consensus 375 ~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 438 (605)
+-.+++..|...+..+....- .|+ ...+..++. .+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889899988888875421 111 122222232 2446799999999997 333444333333333
Q ss_pred HH--HHHHHhcCC--HHH--HHHHHHHhhhccCCCCCCccHHHHHHHH-HHHHcc--CCHHHHHHHHHHHHhCC--CCCC
Q 036303 439 SL--IHGLFKNGR--ISN--ALNFFLEKTDKTDGGYCSPNHVLYAAII-QALCYD--GQILKASKLFSDMRSDN--LRPD 507 (605)
Q Consensus 439 ~l--~~~~~~~g~--~~~--A~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~--g~~~~A~~~~~~~~~~~--~~p~ 507 (605)
.+ +..+...+. ..+ +-++++.+....... ...+..++..++ .++... -...++...+.+..+.- ...+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNS-PNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCC-ccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 22 222222222 222 666666554432111 122333444433 333211 12235555544433311 1112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc--cHHHHH-----HHHHHHHhcCChhHHHHHHHHHHh
Q 036303 508 NC----TYTTMLRGLLRAKRMLDVMMLLADMIKMGI-VP--DAVINQ-----VMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 508 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
.. +++.+...+. .|+..+............. .| ....|. .+.+.|...|+.++|.....+...
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 21 2222333333 6787776666555442111 12 344452 345568889999999988877654
No 282
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.44 E-value=7.3 Score=40.56 Aligned_cols=196 Identities=15% Similarity=0.039 Sum_probs=95.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CcC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHhhHH
Q 036303 340 CKEGDMEKALSVCSQMTEKGV-EPN-------VVTFSSLIDGQCKAGNIDAAMGLYT--------EMVIKSLVPDVVVFT 403 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 403 (605)
+-.+++..|...++.+..... .|+ +..+...+-.+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 457889899999988876421 111 2222333334445799999999997 333444333333333
Q ss_pred H--HHHHHHhcC--CHHH--HHHHHHHHHHC-CCCCC--HHHHHHHH-HHHHh--cCCHHHHHHHHHHhhhcc-CCCCCC
Q 036303 404 A--LIDGLSKDG--NMKE--TLRLYKEMLEA-KITPS--VFTVSSLI-HGLFK--NGRISNALNFFLEKTDKT-DGGYCS 470 (605)
Q Consensus 404 ~--l~~~~~~~g--~~~~--a~~~~~~~~~~-~~~~~--~~~~~~l~-~~~~~--~g~~~~A~~~~~~~~~~~-~~~~~~ 470 (605)
. ++..+...+ ...+ ...+++.+... .-.|+ ..++..++ .++.. .-...++...+.+.++.. ...+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 112222222 2223 66666655432 11222 22333333 22221 112236666665555543 111111
Q ss_pred cc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCH--HHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 036303 471 PN-HVLYAAIIQALCYDGQILKASKLFSDMRSD-NLRPDN--CTYTT-----MLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 471 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~--~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.- ..+++.+...+. .|+..+..+........ ...||. ..|.. +.+.+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 122333333333 67777766665554331 112332 24533 33446678999999888776543
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.26 E-value=5.6 Score=38.49 Aligned_cols=99 Identities=9% Similarity=0.029 Sum_probs=71.2
Q ss_pred CccHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH-HCCCCccHHH
Q 036303 470 SPNHVLY-AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLL--RAKRMLDVMMLLADMI-KMGIVPDAVI 545 (605)
Q Consensus 470 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~-~~~~~~~~~~ 545 (605)
.++..++ +.++..+.+.|-.++|.+.+.++... .+|+...|..+++.-. ...+...+.++++.|. ..| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555544 46677788889999999999999883 2445667777776433 2345888899999988 566 56777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
|-.....=...|..+.+-.++-++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 76666555588888888887666654
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.13 E-value=3 Score=34.82 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCCHHH-----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 036303 56 STLIIAFSEMGHIEEALWVYRKIEVLPAIQA-----CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCC 130 (605)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (605)
..++..+...|++++|..-++.....+.... -..|.+.....|.+++|..+++.....+. .......-...+.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 4566677778888888877776532222222 23455666677777777777776654321 2233444556677
Q ss_pred ccCChhHHHHHHHHHHhCC
Q 036303 131 GQGDVMKALNLFDEMIDKG 149 (605)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~ 149 (605)
..|+-++|+.-|+..++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777777663
No 285
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.06 E-value=16 Score=42.96 Aligned_cols=367 Identities=12% Similarity=0.048 Sum_probs=185.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHN--LQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCK 271 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (605)
.+..+-.+++.+.+|+..++.-.... .......+..+...|+..+++|...-+...... .|+ . ...+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H-HHHHHHHHh
Confidence 45556678899999999998731110 011233455555699999999988877764221 122 2 334556778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 036303 272 AGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSL-IDGYCKEGDMEKALS 350 (605)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 350 (605)
.|++..|...|+.+.+.+ ++....++.++......|.+.......+-..... .+....++.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 999999999999999876 3446678888887778888888887666655442 2233333332 333456677777666
Q ss_pred HHHHHhhCCCCcCHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHHCCCCC---------CHhhHHHHHHHHHhcCCHHH
Q 036303 351 VCSQMTEKGVEPNVVTFSS--LIDGQCKAG--NIDAAMGLYTEMVIKSLVP---------DVVVFTALIDGLSKDGNMKE 417 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~ 417 (605)
... .. +..+|.. ++....+.. +.-.-.+..+.+...-+.| -...|..++....-.. .+.
T Consensus 1540 ~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~ 1611 (2382)
T KOG0890|consen 1540 YLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN 1611 (2382)
T ss_pred hhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH
Confidence 554 11 1222222 222222221 1111111222221110000 0112222222211110 000
Q ss_pred HHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHhhh-ccCCCCC-CccHHHHHHHHHHHHccCCH
Q 036303 418 TLRLYKEMLEAKITPSVF------TVSSLIHGLFKNGRISNALNFFLEKTD-KTDGGYC-SPNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 489 (605)
..+... +..++.. -|..-+..-....+..+-+--+++..- .....+. ..-..+|....+.....|++
T Consensus 1612 ---~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1612 ---SIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred ---HHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 001111 1111111 111111111111122222222221111 1111011 22245666777777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-------cHH-----H----HHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-------DAV-----I----NQVMVRGY 553 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~-----~----~~~l~~~~ 553 (605)
+.|...+=.+.+.+ -+..+...+.-....|+...|+.+++..++...+. .+. + ...+..-.
T Consensus 1687 q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~ 1763 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYL 1763 (2382)
T ss_pred HHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHH
Confidence 88888877776643 23345566777778888889988888877432111 111 1 11222223
Q ss_pred HhcCCh--hHHHHHHHHHHhcCCCCCCCCccch
Q 036303 554 QENGDL--KSAFRCSEFLKESRIGSSETEGHTT 584 (605)
Q Consensus 554 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~ 584 (605)
...|+. +.-.+.|..+.+..|+.+..+.+.+
T Consensus 1764 ~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1764 EESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 344442 3445678888888887777777666
No 286
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.45 Score=40.72 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHH
Q 036303 487 GQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
.+++.|+..+.+++. +.|+.. .|..-+..+.+..+++.+..--.++++ +.|+ ......++..+.....+++|+.
T Consensus 24 k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 344444444444443 344442 233333344444444444444444443 3343 3344444445555555555555
Q ss_pred HHHHHHhcCCCCCCCCccchhhhhh
Q 036303 565 CSEFLKESRIGSSETEGHTTRSFLG 589 (605)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (605)
.+.++..+.-...++....+...|.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~ 124 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALR 124 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHH
Confidence 5555544433333333333333333
No 287
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.96 E-value=0.78 Score=41.48 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=46.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY 485 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 485 (605)
.+-|.++|.+++|+..|...+... +.++.++..-..+|.+...+..|..-...++... ..-.-+|..-+.+-..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-----~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-----KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-----HHHHHHHHHHHHHHHH
Confidence 344556666666666666555542 3355555555666666666665555555444321 1112223333333333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC
Q 036303 486 DGQILKASKLFSDMRSDNLRPD 507 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~ 507 (605)
.|...+|.+-++..++ +.|+
T Consensus 178 Lg~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HhhHHHHHHhHHHHHh--hCcc
Confidence 4445555555555554 4454
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.83 E-value=0.96 Score=37.90 Aligned_cols=95 Identities=14% Similarity=0.028 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCccHHH--H
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC--TYTTMLRGLLRAKRMLDVMMLLADMIKM---GIVPDAVI--N 546 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~ 546 (605)
..+..++..|.+.|+.++|.+.+.++.+....|... .+..++..+...+++..+...+.++... |-+++... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456677777778888888888888877654444332 5566777777777888777777766532 21222111 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 036303 547 QVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
..-+-.+...|++.+|.+.|=.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHc
Confidence 1223345566777777765433
No 289
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.72 E-value=1.4 Score=36.11 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHccC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 473 HVLYAAIIQALCYDG-----------QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
..++..++.+|...+ .+++|...|+++.+ ..|+...|+.-+..+. +|-++..+..+.+
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 455555665554332 25566677777776 7899999988887763 4556666665544
No 290
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.66 E-value=2.5 Score=40.46 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=72.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCC-CCcc---HHHHHHHHHHHHccCCHHHHHHHHHHHHh-------CCCCCCH--
Q 036303 442 HGLFKNGRISNALNFFLEKTDKTDGGY-CSPN---HVLYAAIIQALCYDGQILKASKLFSDMRS-------DNLRPDN-- 508 (605)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~-- 508 (605)
..+.-.|++..|.+++...-......+ ..|. -..||.++..+.+.|.+..+..+|.++++ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567888888887765433222111 1221 23356777777788888888888877764 3555532
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 036303 509 --------CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQEN 556 (605)
Q Consensus 509 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 556 (605)
.......-.|.+.|++-.|.+.|.+.... +..++..|..++.+|...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 12223344566889999999988887742 455788898888887643
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.66 E-value=3.2 Score=33.58 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=8.5
Q ss_pred HHccCChhHHHHHHHHHHh
Q 036303 129 CCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~ 147 (605)
++..|+|.+|+.+|+.+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3344444444444444433
No 292
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.59 E-value=3.1 Score=33.30 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=5.6
Q ss_pred HHccCCHHHHHHHHH
Q 036303 483 LCYDGQILKASKLFS 497 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~ 497 (605)
|.+.+.++++.-++.
T Consensus 79 c~~~~l~~~~~~l~~ 93 (140)
T smart00299 79 CEKAKLYEEAVELYK 93 (140)
T ss_pred HHHcCcHHHHHHHHH
Confidence 333333333333333
No 293
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.36 E-value=0.96 Score=39.80 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH
Q 036303 81 LPAIQACNALLNGLIK-----KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVV 155 (605)
Q Consensus 81 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 155 (605)
..+-.+|...+..+.. .+..+-.-..+..|...|+.-|..+|+.|++.+-+-.- -| ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP-~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IP-QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------cc-HH
Confidence 3455566666665543 34455555666777777777777777777766533211 11 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 036303 156 IYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVAD 204 (605)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 204 (605)
.+....--|- .+.+=+++++++|...|+.||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1223467788888888888888888888888776654
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.33 E-value=7.8 Score=37.08 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK 358 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 358 (605)
...+.-+.|+++............ .++...+..+... ..++++++....+.+...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 355677888888855555554432 2344455555433 778888888887776653
No 295
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.32 E-value=3.5 Score=33.02 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=15.1
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 036303 196 MDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLC 235 (605)
Q Consensus 196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (605)
+..+...+.+.....+++.+...+ ..+....+.++..|+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 333333334444444444443333 123333344444443
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.29 E-value=0.21 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=12.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
|..++.++...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444555555555555555555544
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.13 E-value=0.26 Score=28.26 Aligned_cols=27 Identities=4% Similarity=-0.015 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+|..|...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778888888888888888888553
No 298
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.02 E-value=1 Score=36.97 Aligned_cols=95 Identities=11% Similarity=-0.020 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc---CC-------HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD---GQ-------ILKASKLFSDMRSDNLRPDNC-TYTTMLRGL 518 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-------~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~ 518 (605)
++.|++.++...... +.|...++..+.++... .. +++|+.-|++++. +.|+.. ++..+..++
T Consensus 7 FE~ark~aea~y~~n-----P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 345555555544443 44555555544444322 22 3455666666666 788865 788888887
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 036303 519 LRAK-----------RMLDVMMLLADMIKMGIVPDAVINQVMVRGY 553 (605)
Q Consensus 519 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 553 (605)
...+ .+++|...|+++.. .+|+...|..-....
T Consensus 80 ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 80 TSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 7432 25556666666665 678888887765554
No 299
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=12 Score=38.25 Aligned_cols=344 Identities=13% Similarity=0.082 Sum_probs=179.5
Q ss_pred CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC--hHHHHHHHHHHHhCCCC
Q 036303 149 GIEPTVVIYT-----ILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVAD--VNRALEFYHEMLHHNLQ 221 (605)
Q Consensus 149 ~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 221 (605)
|++.+..-|. .++..+...+.+..|+++-..+...-.. ....|......+.+..+ -+++++.+++=++...
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 5666655554 3556667778888888887776543222 14555566666665532 2344444444333222
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 036303 222 PNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF----PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTY 297 (605)
Q Consensus 222 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 297 (605)
.....|..++......|+.+.|..+++.=...+.. .+..-+...+.-....|+.+-...++-.+... .....+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 34556777887777888888888877643221100 01111222233333444444444444443321 111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHhhC-CCCcCHHHHHHHHHHHH
Q 036303 298 NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVC-SQMTEK-GVEPNVVTFSSLIDGQC 375 (605)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~-~~~~~~~~~~~l~~~~~ 375 (605)
+....+...|..++.+..+.. |..+ +-..|-...+...+..+. +..... -+.+-..........+.
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 111123344555555554431 1111 111122222222211111 110000 01111122223333444
Q ss_pred hcCCHH----------HHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036303 376 KAGNID----------AAMGLYTEMVIK-SLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGL 444 (605)
Q Consensus 376 ~~~~~~----------~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (605)
+..... +-+.+.+.+... +......+.+.-+.-+...|+..+|.++-.+.. -|+...|..-+.++
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTAL 725 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHH
Confidence 333211 112222222221 222233345555666778899999988877664 57888888888899
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (605)
+..+++++-.++-++. ..+..|.-...+|.+.|+.++|.+++-+.. +.. ..+.+|.+.|++
T Consensus 726 a~~~kweeLekfAksk----------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSK----------KSPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDV 786 (829)
T ss_pred HhhhhHHHHHHHHhcc----------CCCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccH
Confidence 9999999877766543 224557778889999999999999987653 222 567789999999
Q ss_pred HHHHHHHH
Q 036303 525 LDVMMLLA 532 (605)
Q Consensus 525 ~~A~~~~~ 532 (605)
.+|.+..-
T Consensus 787 ~eAad~A~ 794 (829)
T KOG2280|consen 787 KEAADLAA 794 (829)
T ss_pred HHHHHHHH
Confidence 99987643
No 300
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.91 E-value=13 Score=38.57 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=21.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 036303 160 LIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV 202 (605)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 202 (605)
++-.+.++|++++|.++....... .......+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 344556666666666666443332 222344555555555543
No 301
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.77 E-value=3.6 Score=31.75 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKS 394 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 394 (605)
+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33344444444444444444332 13344444444444444444444444444444443
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.72 E-value=1.6 Score=41.65 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=78.9
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (605)
..|+...|-+-+...+...+ ..|+... .....+...|+++.+...+...... +.....+...+++.....|+++
T Consensus 301 ~~gd~~aas~~~~~~lr~~~---~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQ---QDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCC---CCchhhH--HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 45666666555555555432 1333322 2333455668888888777655442 3344556777777777888888
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
+|....+.|+...++ ++++....+..-...|-++++...|+++..++|+..
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 888888777754443 555555555555667788888888888888877543
No 303
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.68 E-value=0.91 Score=39.95 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=74.4
Q ss_pred CHHhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 036303 118 DVVTYGVLIDCCCG-----QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTY 192 (605)
Q Consensus 118 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 192 (605)
|-.+|...+..+.. .+.++=.-..+..|.+.|+..|..+|+.|++++-+-.-... .+|+.
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~------------- 130 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQK------------- 130 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHH-------------
Confidence 55566666655543 35566666677788888888888888888877654332111 11111
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH-HHHHHHHHHH
Q 036303 193 NALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELR-AAGNFFVHMA 251 (605)
Q Consensus 193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~ 251 (605)
....|- .+-+-++.++++|...|+.||..+-..++.++.+.+..- +..++.--|.
T Consensus 131 --~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 --VFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred --HHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 111111 223567899999999999999999999999998887643 3334443443
No 304
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.68 E-value=0.28 Score=31.02 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
....++-++.+.|++++|++..+.+++..|++...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 44566777888888888888888888888876543
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.65 E-value=0.29 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=11.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+..++...|++++|++.|+++++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.63 E-value=0.17 Score=28.60 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNA 453 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A 453 (605)
|.+..++..++..+...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.38 E-value=1.7 Score=39.00 Aligned_cols=76 Identities=12% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS-----DNLRPDNCTY 511 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 511 (605)
+..++..+...|+.+.+.+.+++.+... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3444445555555555555555555543 44455555555555555555555555555443 3555555544
Q ss_pred HHHHHH
Q 036303 512 TTMLRG 517 (605)
Q Consensus 512 ~~l~~~ 517 (605)
..+..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 443333
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.30 E-value=15 Score=37.68 Aligned_cols=178 Identities=17% Similarity=0.055 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 036303 240 LRAAGNFFVHMAKFGVFPNIFVYNCLIDG-----HCKAGNLFEAMSLCSEMEK-------FEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 307 (605)
...+.++++...+.| +......+..+ +....+.+.|+..|+.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456667777766654 22222222222 2345677778777777755 43 233445566666553
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----c
Q 036303 308 G-----QLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK-EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK----A 377 (605)
Q Consensus 308 ~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 377 (605)
. +.+.|..++.+....| .|+.......+..... ..+...|.++|..+...|.. ..+..+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 5667888888887776 3344333222222222 24567888888888887643 222223333322 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAK 429 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 429 (605)
.+...|..++.+....+ .|........+..+.. ++++.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 46788888888888776 3222222222333333 66777776666666655
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.25 E-value=5.3 Score=32.37 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLY-AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKR 523 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (605)
...++.+++..++..+.-- .|..... ..-...++..|++.+|+.+|+++.+. .|....-..|+..|....+
T Consensus 21 l~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcC
Confidence 4556666776666665543 3332222 22234456677777777777776652 2333333344444433222
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 036303 524 MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
-..=...-..+++.+-.|+. ..+++.+....+...|..
T Consensus 93 D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 12222223334443333322 224444444444444443
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.24 E-value=7 Score=33.74 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=11.2
Q ss_pred hhcCCchHHHHHHHHHHHH
Q 036303 6 ANAKLYKNARCLIKDVTEN 24 (605)
Q Consensus 6 ~~~~~~~~a~~~~~~l~~~ 24 (605)
..++++.+|-.++.+....
T Consensus 25 gg~~k~eeAadl~~~Aan~ 43 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANM 43 (288)
T ss_pred CCCcchHHHHHHHHHHHHH
Confidence 3445666666666666543
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.08 E-value=0.27 Score=26.79 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 544 VINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
.++..++.++...|++++|...++.+.+.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667777888888888888888888777664
No 312
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.83 E-value=4.9 Score=31.09 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
+..+..+|+-+.-.+++..+.+ +-.+++.....+..+|.+.|+..++-+++.++.+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444432 123444444444444444455444444444444444
No 313
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.70 E-value=2.1 Score=33.11 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 505 RPDNCTYTTMLRGLLRAK---RMLDVMMLLADMIKMGIVP--DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.++..+-..+.+++.+.. +.++.+.+++...+. -.| .......|+-.+.+.|+|+.++++.+.+.+..|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 456667778888888764 456677788888862 233 35666778888999999999999999999988887644
No 314
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.62 E-value=2.5 Score=38.02 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-ccCCCCCCccHHHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD-KTDGGYCSPNHVLY 476 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~ 476 (605)
++..++..+...|+.+.+...+++++... +-+...+..++.+|.+.|+...|+..|+.+.+ .....|+.|.+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34455555566666666666666666554 44555666666666666666666666665554 22233445544443
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.42 E-value=0.48 Score=28.07 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 543 AVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
..++..++.+|...|++++|..+++++.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4567888999999999999999988887653
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.35 E-value=14 Score=35.36 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVP---DVVVFTALIDGLSKDGNMKETLRLYKEMLE 427 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 427 (605)
...++..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777788888888888777777643111 233444445556677777888877777766
No 317
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.30 E-value=9.8 Score=33.54 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC----CC-------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLV----PD-------VVVFTALIDGLSKDGNMKETLRLYKEMLEAK-ITPSVFT 436 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 436 (605)
.+...|...+.+..-.++++++...... .| ...|..-++.|....+-.....+|++.+... --|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 3455555555565555555555432110 01 1244445566666666666667777665321 1233333
Q ss_pred HHHH----HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH--HHHHHHHHccC
Q 036303 437 VSSL----IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY--AAIIQALCYDG 487 (605)
Q Consensus 437 ~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g 487 (605)
...+ +.+..+.|++++|-.-|-++.+.+..+|.+....++ ..+...+.++|
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3222 122346677887776666666666666654444433 33334444433
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.11 E-value=6.6 Score=31.24 Aligned_cols=51 Identities=6% Similarity=-0.108 Sum_probs=22.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 97 KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
.++++++..+++.|.-..+. ....-..-...+...|+|++|..+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443221 1111112223344455555555555555544
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.90 E-value=24 Score=37.22 Aligned_cols=226 Identities=15% Similarity=0.090 Sum_probs=114.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHhhCC----CCcCHHHHHHHH
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANV-------VTYNSLID-GYCKEGDMEKALSVCSQMTEKG----VEPNVVTFSSLI 371 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 371 (605)
.....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++.+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888887654222222 12333322 2345788888888888777651 122345566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHH--HHHHhcCCHH--HHHHHHHHHHHC---CCCC---CHHHHH
Q 036303 372 DGQCKAGNIDAAMGLYTEMVIKSLVPDVVV---FTALI--DGLSKDGNMK--ETLRLYKEMLEA---KITP---SVFTVS 438 (605)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~g~~~--~a~~~~~~~~~~---~~~~---~~~~~~ 438 (605)
.+..-.|++++|..+..+..+..-.-+... +..+. ..+...|+.. +....+...... ..+. -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777778999999888877665422223322 22222 2345566322 222233222221 1111 122333
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhhhccCCCCCCccHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCC----CHHHH
Q 036303 439 SLIHGLFK-NGRISNALNFFLEKTDKTDGGYCSPNHVLY--AAIIQALCYDGQILKASKLFSDMRSDNLRP----DNCTY 511 (605)
Q Consensus 439 ~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~ 511 (605)
.+..++.+ .+...++..-+.-..... ..|-...+ ..++.+....|+.++|...++++......+ +..+-
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~----~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYT----PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcc----cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 44444443 122222222222211111 12222222 366777888899999998888887643222 22232
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHH
Q 036303 512 TTMLRGLL--RAKRMLDVMMLLAD 533 (605)
Q Consensus 512 ~~l~~~~~--~~g~~~~A~~~~~~ 533 (605)
...+.... ..|+..++.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 23333222 46777777665543
No 320
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.79 E-value=13 Score=34.20 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPDNC--TYTTMLRGLLRAKR--MLDVMMLLADMIKMGIVPDAVINQVMVR 551 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 551 (605)
+.++.+|+.+.+.|+..+.. ....++..+..... ...+..+++.+.+.|+++....|..++-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 34555555555555544332 22222222211111 3345555555666666555544554443
No 321
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.36 E-value=26 Score=36.89 Aligned_cols=229 Identities=13% Similarity=0.062 Sum_probs=124.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCH-------HHHHHH-HHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHHH
Q 036303 340 CKEGDMEKALSVCSQMTEKGVEPNV-------VTFSSL-IDGQCKAGNIDAAMGLYTEMVIK----SLVPDVVVFTALID 407 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 407 (605)
....++++|..+..++...-..|+. ..+..+ .......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4577899999998887665222221 122222 22334578999999998887765 12234556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHH--HHHHHhcCCHH--HHHHHHHHhhhccCCCC--CCccHHHHHH
Q 036303 408 GLSKDGNMKETLRLYKEMLEAKITPSVF---TVSSL--IHGLFKNGRIS--NALNFFLEKTDKTDGGY--CSPNHVLYAA 478 (605)
Q Consensus 408 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~g~~~--~A~~~~~~~~~~~~~~~--~~~~~~~~~~ 478 (605)
+..-.|++++|..+..+..+..-.-+.. .+..+ ...+..+|+.. +....|........... ..+-......
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999999887776542222322 23333 23356677433 33333333222110000 0112233444
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc----cHHHHHHHH-
Q 036303 479 IIQALCY-DGQILKASKLFSDMRSDNLRPDNCT--YTTMLRGLLRAKRMLDVMMLLADMIKMGIVP----DAVINQVMV- 550 (605)
Q Consensus 479 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~- 550 (605)
+..++.+ .+...++..-++--......|-... +..|+......|++++|...+.++......+ +-.+....+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4555544 2233334333433333222222222 2356777788999999999998887543333 322222222
Q ss_pred -HHHHhcCChhHHHHHHHH
Q 036303 551 -RGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 551 -~~~~~~g~~~~A~~~~~~ 568 (605)
..-...||..+|..+..+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 234567898888877655
No 322
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.35 E-value=9 Score=31.51 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=16.0
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 036303 281 LCSEMEKFEISPDVFTYNILIKGLCGVGQLE 311 (605)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (605)
.++.+.+.+++|+...+..++..+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344444455555555555555555555543
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.22 E-value=2.1 Score=38.45 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 134 DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRE 182 (605)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (605)
+.++++.++..=++.|+-||..+++.+|..+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555544443
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.14 E-value=32 Score=37.56 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 036303 226 TFGVLMDGLCKVG--ELRAAGNFFVHMA 251 (605)
Q Consensus 226 ~~~~l~~~~~~~~--~~~~a~~~~~~~~ 251 (605)
....++..|.+.+ .++.++.......
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3344555555555 4455554444444
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.10 E-value=3.9 Score=34.52 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=52.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHhcCChhH
Q 036303 485 YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM---GIVPDAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 561 (605)
+.|+ ++|.+.|-++...+.--++..... +..|....+.+++++++-++++. +-.+|+.++..|+..|.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3443 567777777766554444444434 44555577888888888888753 225578888889999999998888
Q ss_pred HH
Q 036303 562 AF 563 (605)
Q Consensus 562 A~ 563 (605)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 326
>PRK09687 putative lyase; Provisional
Probab=90.01 E-value=15 Score=33.61 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 036303 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDM----EKALSVCSQM 355 (605)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~ 355 (605)
+|.......+.++...|. +.+...+..+... +|...-...+.++...|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 444444555555555543 2233333333332 2444444444444444442 3344444444
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.94 E-value=25 Score=36.05 Aligned_cols=176 Identities=17% Similarity=0.061 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCcccHHHHHHHHhcc
Q 036303 135 VMKALNLFDEMIDKGIEPTVVIYTILIHG-----LCNENKMVEAESMFRSMRE-------CGVVPNLYTYNALMDGYCKV 202 (605)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~ 202 (605)
...|.+.++.....| +......+..+ +....+.+.|...|+.... .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456788888777765 33333333333 3345678888888887766 44 333555666666654
Q ss_pred C-----ChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----
Q 036303 203 A-----DVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV---GELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHC---- 270 (605)
Q Consensus 203 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 270 (605)
. +.+.|+.+|...-..| .|+.. ..+...+..- .+...|.++|..+.+.|. ...+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 3 4566777777777665 33333 2333333222 346677788877777663 222222222222
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 271 KAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEG 324 (605)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (605)
...+...|..++++..+.|. |...--...+..+.. +.++.+...+..+...+
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 23366777777777777652 221111122222223 55666665555555544
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.81 E-value=0.47 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 036303 545 INQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
....++.++...|+.++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566777777777777777654
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.25 E-value=38 Score=37.09 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC------CCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHH--hHHHH
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIEV------LPAIQACNALLNGLIKK-GKFDSVWEFYEEMVLCGLVADVV--TYGVL 125 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~--~~~~l 125 (605)
-...++-+++.+++.+|.++.++... ..+...+..-+.++.++ ++.+-...++-.+...++.-+.. ++..-
T Consensus 680 VLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~ 759 (1265)
T KOG1920|consen 680 VLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSG 759 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcccccccc
Confidence 34667778888999999999887631 22344555555555554 33343333333333221111000 01111
Q ss_pred HHHHHccC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 036303 126 IDCCCGQG----DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNEN--KMVEAESMFRSMRE 182 (605)
Q Consensus 126 ~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 182 (605)
...|.... .++...+.+....... .|+ .-...++..|.+.+ .++.++....+...
T Consensus 760 k~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 760 KQVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred ceeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 11221111 2233333333333332 444 44456777888877 66777776666654
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.24 E-value=0.7 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYR 76 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~ 76 (605)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666777777777776654
No 331
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.10 E-value=7 Score=33.98 Aligned_cols=89 Identities=9% Similarity=-0.002 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCc-----cHHHHHH
Q 036303 487 GQILKASKLFSDMRS----DNLRPD--NCTYTTMLRGLLRAKRML-------DVMMLLADMIKMGIVP-----DAVINQV 548 (605)
Q Consensus 487 g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~-----~~~~~~~ 548 (605)
..+++|++.+.-+.- .+.+|. ...+..+.+.|...|+.+ .|.+.|++..+..-.| +..+...
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 345555555544332 123333 235667777777777744 4555555555332221 2567778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
++....+.|++++|.+++.++....-.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 899999999999999999999875433
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.05 E-value=1.3 Score=31.81 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
+.=++.+-+..+....+.|++.+....+.+|.+.+|+..|.++++-..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344666666666666777777777777777777777777777777655
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.01 E-value=6.9 Score=33.10 Aligned_cols=73 Identities=15% Similarity=0.024 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCcccHHHHHHHHhccCChHHHH
Q 036303 136 MKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMREC---GVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
+.|+..|-.+...+.--++.....|+..|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566666666666554434555555544444 56677777777666554 22456677777777777777777663
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.95 E-value=4.1 Score=29.44 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
++.+-+..+....+.|++.+.....++|.+.+|+.-|.++++-++.+-
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 455556666666777777777777788888888888888887777543
No 335
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=88.78 E-value=0.61 Score=44.46 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHH
Q 036303 487 GQILKASKLFSDMRSDNLRPDNCT-YTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
++++.|+.++.++++ +.||... |..-..++.+.+++..|+.-+.++++ ..|+ ...|..-+.++.+.+++.+|+.
T Consensus 18 ~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred chHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHHHHHH
Confidence 344444444444444 3343332 22222334444444444444444443 2232 3344444444444444444444
Q ss_pred HHHHHHhcCCCC
Q 036303 565 CSEFLKESRIGS 576 (605)
Q Consensus 565 ~~~~~~~~~~~~ 576 (605)
.+++.....|++
T Consensus 94 ~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 94 DLEKVKKLAPND 105 (476)
T ss_pred HHHHhhhcCcCc
Confidence 444444444443
No 336
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=9.6 Score=33.07 Aligned_cols=83 Identities=13% Similarity=-0.011 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH-HHHHHHHHHcc
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSV-FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL-YAAIIQALCYD 486 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 486 (605)
|.....++.|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..--.++++ +.||... -..+..+....
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq------l~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ------LDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh------cChHHHHHHHHHHHHHHhh
Confidence 33444555555555555543 3333 2333444445555555555554444444 2343322 22333444445
Q ss_pred CCHHHHHHHHHHH
Q 036303 487 GQILKASKLFSDM 499 (605)
Q Consensus 487 g~~~~A~~~~~~~ 499 (605)
..+++|+..+.++
T Consensus 92 ~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 92 KGYDEAIKVLQRA 104 (284)
T ss_pred ccccHHHHHHHHH
Confidence 5555666665555
No 337
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.57 E-value=7.8 Score=33.69 Aligned_cols=80 Identities=8% Similarity=-0.028 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhhh
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLG 589 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (605)
.+..+.+++...|++-++++.-...+... +-+..+|..-+++....=+..+|..-+.++++++|.-.++.+..+..+-.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~ 310 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLEN 310 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 34455566667788888888877777632 23678888888888888888888888888888888777666665555444
Q ss_pred c
Q 036303 590 H 590 (605)
Q Consensus 590 ~ 590 (605)
+
T Consensus 311 r 311 (329)
T KOG0545|consen 311 R 311 (329)
T ss_pred H
Confidence 4
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.31 E-value=12 Score=29.96 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=37.9
Q ss_pred HHHHHhcCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036303 59 IIAFSEMGHIEEALWVYRKIE-VLPA-IQACNALLNGLIKKGKFDSVWEFYEEMVLCG 114 (605)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (605)
++.-...++++++..+++.+. ..|+ ...-.--...++..|++.+|+.+|+++...+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 334455889999999988773 2222 2222223345678999999999999998764
No 339
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.14 E-value=28 Score=34.15 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 036303 326 LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTAL 405 (605)
Q Consensus 326 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 405 (605)
+.|.....+++..+.....+.-...+..+|...| .+...+..++.+|... ..+.-..+|+++.+..+. |.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4556666666777776666777777777777654 3556666777777666 455566666666665332 33333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEA 428 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~ 428 (605)
+..|.+ ++...+..+|.++...
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH
Confidence 443333 6666666666666654
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.88 E-value=0.91 Score=25.33 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=13.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555555555555555544
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.80 E-value=4.6 Score=29.53 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 491 KASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
+..+-+..+....+.|++.+....+.+|.+.+++..|.++++-..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555555555666666666666666666666666666666554
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.74 E-value=0.72 Score=27.80 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=11.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 036303 549 MVRGYQENGDLKSAFRCSEFLK 570 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~ 570 (605)
++.+|...|+.+.|+.+++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4455555555555555555554
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.69 E-value=38 Score=35.18 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=65.6
Q ss_pred HHHHHHhcCChHHHHHHHHhcC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 036303 58 LIIAFSEMGHIEEALWVYRKIE-VLP---AIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQG 133 (605)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (605)
-+..+.+.+.+++|+.+-+... ..+ ....+..++..+...|++++|....-.|... +..-|..-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 4566778888888888887663 222 3456777778888888888888877777654 5566666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036303 134 DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (605)
+......+ +.......+...|..++..+..
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 65543332 2222222456677777766665
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.41 E-value=1.1 Score=24.67 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 438 SSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
..++.++.+.|++++|.+.|++++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34445555556666666666655554
No 345
>PRK09687 putative lyase; Provisional
Probab=87.33 E-value=23 Score=32.41 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=9.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
.+.++...|+- +|+..+..+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 33444444442 34444444443
No 346
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.25 E-value=1 Score=40.95 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=81.0
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKR 523 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 523 (605)
...|.+++|++.|...+... ++....|..-..++.+.+++..|++-+..+.+ +.||.. .|-.-..+-.-.|+
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-----p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-----PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred hcCcchhhhhcccccccccC-----CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhc
Confidence 35677888888888887753 45555666666778888888888888888887 667654 33333334445788
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 524 MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
|++|...+....+.++.+... ..+-.+.-..+..++-...+++.++..
T Consensus 198 ~e~aa~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred hHHHHHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHHHh
Confidence 999999998888866655433 333445555666666666666665543
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.99 E-value=32 Score=33.71 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 521 AKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..+++.|++++-+ ..|...-..+-.-|+..+.-.|+|..=-.-.++..+.+|.
T Consensus 359 rkdpewAikviik--s~~~~nlKeIK~ELVpsli~e~dWnsWsqkAK~ilKk~t~ 411 (711)
T COG1747 359 RKDPEWAIKVIIK--SLGPKNLKEIKQELVPSLIPEGDWNSWSQKAKKILKKSTR 411 (711)
T ss_pred hhChHHHHHHHHH--hcCCccHHHHHHHHHHhhCChhhhhHHHHHHHHHHhcCCc
Confidence 4566777666432 3332222556677777777788776544444455555543
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.99 E-value=1.6 Score=25.66 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=13.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+++.+..+|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555443
No 349
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.72 E-value=28 Score=32.72 Aligned_cols=30 Identities=17% Similarity=0.064 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
++..+...+..+|-.+.|...++-+.+.+-
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 344555566777888888888888777765
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.47 E-value=7.8 Score=28.40 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+..+-+..+....+.|++.+....+++|.+.+|+.-|.++++-++.+-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~ 78 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK 78 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh
Confidence 444445555566677777777777777777777777777777777654433
No 351
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.36 E-value=27 Score=32.23 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhC
Q 036303 275 LFEAMSLCSEMEKF 288 (605)
Q Consensus 275 ~~~a~~~~~~~~~~ 288 (605)
..++..+++.|++.
T Consensus 119 ~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 119 IQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555555553
No 352
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=86.20 E-value=1.5 Score=37.41 Aligned_cols=66 Identities=12% Similarity=0.000 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchh
Q 036303 518 LLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTR 585 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 585 (605)
....++.+.|.+++.+++. +.| ....|..++..-.++|+.+.|.+.|++..+++|++...-.+.+.
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa 71 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLA 71 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHH
Confidence 3467888888899988887 455 58889999999999999999999999999999988766554443
No 353
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.16 E-value=18 Score=29.85 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=69.3
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 105 EFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (605)
+.++.+.+.+++|+...+..++..+.+.|++.....+ +..++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4455556667777777777777777777775544443 33333334333332222221 2233344444444432
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 185 VVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 185 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113555666777777777777777654321 122234455555555555554444444433
No 354
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.79 E-value=19 Score=32.67 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=55.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE---ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTY 332 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (605)
+.+..+...++..-....+++.++..+-.+.... ..++.. -...+..+ ..-++++++.++..=+..|+.||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3444444555555555566666666666654421 011111 11122222 223556666666666666777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036303 333 NSLIDGYCKEGDMEKALSVCSQMTEK 358 (605)
Q Consensus 333 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 358 (605)
+.++..+.+.+++..|..+...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777666666555443
No 355
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.29 E-value=31 Score=33.59 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=27.1
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 131 GQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV 171 (605)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (605)
..+.++...+.+..+...|.......+|.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 35677777777777777765555556666666666666543
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.85 E-value=4.5 Score=34.43 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc----HHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD----AVINQVMV 550 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~ 550 (605)
.+..+..+.+.+...+|+...+.-++ -+|. ..+-..+++.++-.|+|++|..-++-+.+ +.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 44556677788888888888877666 3454 34555677788888999998887776665 3343 55566655
Q ss_pred H
Q 036303 551 R 551 (605)
Q Consensus 551 ~ 551 (605)
+
T Consensus 80 r 80 (273)
T COG4455 80 R 80 (273)
T ss_pred H
Confidence 4
No 357
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.20 E-value=65 Score=34.68 Aligned_cols=38 Identities=5% Similarity=-0.023 Sum_probs=21.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036303 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC 200 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 200 (605)
.|......+-+..+++.+....-.++....+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34555566666666666665543444455555555554
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.88 E-value=33 Score=30.99 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
++......|...|.+.+|.++.++.+. +.| +...+..++..|...||--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 455566788899999999999999987 455 788899999999999998888888877654
No 359
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.84 E-value=29 Score=30.38 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=71.0
Q ss_pred HhhcCCchHHHHHHHHHHHHH---hhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--C
Q 036303 5 LANAKLYKNARCLIKDVTENL---LKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--E 79 (605)
Q Consensus 5 ~~~~~~~~~a~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 79 (605)
|...|+|.+|..-|++.+.++ .-...|.+.-+.-+..+ ..| .+....+++...|++-++++-..++ .
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~-------~tp-LllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKM-------ITP-LLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHh-------hhH-HHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 567889999998888887543 23334554444444443 122 3555667778888888888877776 3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 80 VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
.+.++.+|..-..+.+..-+.++|..=|...+..
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 5667888888888888888888888888888775
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.78 E-value=39 Score=31.80 Aligned_cols=122 Identities=9% Similarity=0.074 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 036303 381 DAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK---NGRISNALNFF 457 (605)
Q Consensus 381 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 457 (605)
+.-+.+++++++.+ +.+......++..+.+..+.+...+.+++++... +.+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666666653 3455566666666666667777777777777653 3456666655554432 22455666666
Q ss_pred HHhhhccCCCCC--------Cc--cHHH---HHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 036303 458 LEKTDKTDGGYC--------SP--NHVL---YAAIIQALCYDGQILKASKLFSDMRSDNL 504 (605)
Q Consensus 458 ~~~~~~~~~~~~--------~~--~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (605)
.+.+........ .+ .... +..+...+...|..+.|+.+++-+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 555443211100 00 1111 22223334578888889988888888554
No 361
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.74 E-value=46 Score=33.47 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=48.9
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34566666655544432 444566666666666666666665554432 334444445555544444
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHM 250 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (605)
.+-....+.| ..|.. ..+|...|+++++.+++..-
T Consensus 713 ~la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 4444444433 11211 12234455666655555443
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.43 E-value=20 Score=32.05 Aligned_cols=121 Identities=11% Similarity=0.039 Sum_probs=69.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhc----C-----CCCCH-----HH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 036303 57 TLIIAFSEMGHIEEALWVYRKI----E-----VLPAI-----QA--CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120 (605)
Q Consensus 57 ~l~~~~~~~g~~~~A~~~~~~~----~-----~~~~~-----~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 120 (605)
.-+....-..|+..|++..++- . ..+.. .. ...-|++++..|++.++....-+.-+.--...+.
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk 119 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH
Confidence 4444455567777777776543 0 11111 11 1223577778888888776655544332223345
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHH
Q 036303 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLC-----NENKMVEAESMF 177 (605)
Q Consensus 121 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 177 (605)
+...-|-.|.+.|++..+.++-...++..-..+...|..++..|. -.|.+++|+++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 666666777888888888888777776522233444655555444 367777777766
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.43 E-value=23 Score=35.44 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=89.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 52 PSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
-..-+.+++.+-++|..++|+++- ++..- -.....+.|+++.|.++..+.. +..-|..|..+...
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 445667778888888888888753 22211 2233456788888877665442 56678888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEF 211 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 211 (605)
.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. + .+ ..+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-~A----F~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-LA----FLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-hH----HHHHHHcCCHHHHHHH
Confidence 8888888888877653 345666777777777666666666665543 2 22 2345567888888887
Q ss_pred HHHH
Q 036303 212 YHEM 215 (605)
Q Consensus 212 ~~~~ 215 (605)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7654
No 364
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.40 E-value=4.8 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChhHHHHH--HHHHHhcCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRC--SEFLKESRIG 575 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~--~~~~~~~~~~ 575 (605)
.+..++-.+...|++++|+.+ ++-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345667777788888888888 4466666554
No 365
>PRK10941 hypothetical protein; Provisional
Probab=82.22 E-value=9.9 Score=34.35 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.+-.+|.+.++++.|+...+.++. +.| ++.-+.-.+-+|.+.|-+..|..-++...+.-|+++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 334455566666666666666665 334 3444555566666666666666666666666665443
No 366
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.02 E-value=71 Score=33.52 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=29.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFL 458 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (605)
..+...|....|...+..+... .+......+...-.+.|..+.++....
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 3455667777777777776663 234444555555556666666665554
No 367
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.63 E-value=73 Score=33.42 Aligned_cols=409 Identities=9% Similarity=-0.024 Sum_probs=198.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 036303 56 STLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK--KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQG 133 (605)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (605)
..-+....+.|++..+..+...+...|- ..|......... ...+++...++++... .+.....-...+..+.+.+
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHcc
Confidence 3444556677889998888888854333 233222222222 2245544444443321 1222233344445566677
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH--HHH
Q 036303 134 DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRA--LEF 211 (605)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a--~~~ 211 (605)
++...+..+.. .+.+...-...+.+....|+.++|....+.+=..|.. .+...+.++..+.+.|.+... .+=
T Consensus 114 ~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R 187 (644)
T PRK11619 114 DWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLER 187 (644)
T ss_pred CHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHH
Confidence 77776663321 2456666677888888899988887777776554433 566788888888876655443 333
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCCCHhhHHHHHHH--HHhcCCHHHHHH
Q 036303 212 YHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK---------FGVFPNIFVYNCLIDG--HCKAGNLFEAMS 280 (605)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~--~~~~~~~~~a~~ 280 (605)
++.+...| +......+..... .+.....+.+..+.. ..++++...-..++.+ -....+.+.|..
T Consensus 188 ~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 188 IRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 33333333 2222233332220 111111111111111 0111222111111111 123445677777
Q ss_pred HHHHHHhCC-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036303 281 LCSEMEKFE-ISPDV--FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTE 357 (605)
Q Consensus 281 ~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (605)
.+....... ..+.. ..+..+.......+...++...+....... .+......-+......++++.+...+..|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 777764322 21111 122333322333322455666655544332 2344444445555577888888777777655
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHHH
Q 036303 358 KGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKET-LRLYKEMLEAKITPSVFT 436 (605)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~ 436 (605)
.. .-...-..-+.+++...|+.++|...|+.+... .+|-.++.+ .+.|..-.- ...... ....+... .
T Consensus 341 ~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~~~~~~~~~-~~~~~~~~--~ 409 (644)
T PRK11619 341 EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYPLKIDKAPK-PDSALTQG--P 409 (644)
T ss_pred hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCCCCCCCCCc-hhhhhccC--h
Confidence 32 223344445667767788888888888876421 123222211 122221000 000000 00000000 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSD 498 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (605)
...-+..+...|+...|...+..+... .+......+.......|.++.++....+
T Consensus 410 ~~~ra~~L~~~g~~~~a~~ew~~~~~~-------~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 410 EMARVRELMYWNMDNTARSEWANLVAS-------RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 122234456778888888888877763 2333344455555567777777665543
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.57 E-value=41 Score=30.45 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=58.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhhhcc-CCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 036303 428 AKITPSVFTVSSLIHGLFKNGRIS-NALNFFLEKTDKT-DGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLR 505 (605)
Q Consensus 428 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (605)
.+.+++......++..+...+.-+ +-.++.+.+++.. .+....-++..-..++..|.+.|++.+|+..|=.- -.
T Consensus 43 ~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~ 118 (260)
T PF04190_consen 43 SEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG----TD 118 (260)
T ss_dssp TT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----H
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc----CC
Confidence 344555555555555444433211 2333444444333 11122344555667778888888888888776321 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH-HHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 506 PDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQ-VMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
|+...+..++......|.. .+...+. ..+--|...|+...|...++...+.
T Consensus 119 ~~~~~~~~ll~~~~~~~~~----------------~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 119 PSAFAYVMLLEEWSTKGYP----------------SEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHHHHTSS------------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCC----------------cchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2222222233222222322 2333332 2334577788889898888777765
No 369
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.43 E-value=34 Score=29.45 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTM 514 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 514 (605)
..+..+.+.+.+.+|+...+.-++.. +.|...-..++..++-.|++++|..-++-+-+ +.|+ ...|..+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-----Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~l 78 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-----PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-----CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHH
Confidence 33445566677777777777766653 33444455666777777777777777766655 3333 2355555
Q ss_pred HHH
Q 036303 515 LRG 517 (605)
Q Consensus 515 ~~~ 517 (605)
+.+
T Consensus 79 ir~ 81 (273)
T COG4455 79 IRC 81 (273)
T ss_pred HHH
Confidence 543
No 370
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.00 E-value=0.85 Score=36.77 Aligned_cols=82 Identities=10% Similarity=0.061 Sum_probs=44.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 91 LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..+.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4445556666666666666665554455666677777777766666666655511 112223344555555555
Q ss_pred HHHHHHHHH
Q 036303 171 VEAESMFRS 179 (605)
Q Consensus 171 ~~a~~~~~~ 179 (605)
+++.-++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555444
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.77 E-value=5.7 Score=27.51 Aligned_cols=46 Identities=4% Similarity=0.067 Sum_probs=20.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRP-DN-CTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
...+.++|+..|+++++.-..| +- .++..++.+++..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555421111 11 1444445555555555554443
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.58 E-value=8.9 Score=37.94 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=73.7
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChh
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLK 560 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 560 (605)
+...|+...|.+.+..+.. ..|- .+....|.....+.|-..+|-.++.+.+... ...+-++..++++|....+.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhH
Confidence 3457888999998888775 3442 3355667777778888888888888877643 345777888899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCc
Q 036303 561 SAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 561 ~A~~~~~~~~~~~~~~~~~~~ 581 (605)
.|++.++.+.+++|+....+.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHH
Confidence 999999999999998876544
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.41 E-value=4.2 Score=24.55 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=10.3
Q ss_pred HHHHHccCChhHHHHHHHHHHh
Q 036303 126 IDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
..+|...|+.+.|+++++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 374
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=80.35 E-value=23 Score=26.92 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=53.6
Q ss_pred ccCCHHHHHHHHHHHHh--CCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCcc-HHH--
Q 036303 485 YDGQILKASKLFSDMRS--DNLRP---------DNCTYTTMLRGLLRAKRMLDVMMLLADMIK----MG-IVPD-AVI-- 545 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~--~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~-~~~-- 545 (605)
..|-+++|..-..++.+ ..++| |..++..|..++...|++++++.-.++.+. .| +..| ...
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 34566666666655543 22333 334566677788889999988877666653 22 3334 333
Q ss_pred --HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 546 --NQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 546 --~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
...-+.++...|+.++|...|+++-++
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 334566788999999999999877653
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.10 E-value=6.7 Score=27.19 Aligned_cols=50 Identities=4% Similarity=-0.004 Sum_probs=37.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVPD--AVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+...+.++|+..|.+.++.-..+. -.++-.++.+|+..|++.+++++.-.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999999997543432 33445678899999999999886543
No 376
>PRK12798 chemotaxis protein; Reviewed
Probab=79.82 E-value=59 Score=31.25 Aligned_cols=51 Identities=14% Similarity=0.222 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 036303 342 EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQ-CKAGNIDAAMGLYTEMVI 392 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~ 392 (605)
.|+..++.+.+..+.....++....+..|+.+- ....++..|+++|+...-
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL 176 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL 176 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 355555555555554444444444444444332 223455555555555543
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.18 E-value=46 Score=29.59 Aligned_cols=207 Identities=14% Similarity=0.076 Sum_probs=130.1
Q ss_pred CCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC--
Q 036303 290 ISPDVFTYNILIKG-LCGVGQLEGAEGLLQKMYKEGILA---NVVTYNSLIDGYCKEGDMEKALSVCSQMTEK---GV-- 360 (605)
Q Consensus 290 ~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-- 360 (605)
..||+..-|..-.+ -.+..++++|+.-|.+..+..... .-.....++....+.+++++....|.++... .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 45666544332211 123457899999999988753222 2335566788889999999999999887642 11
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----
Q 036303 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK-----SLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT---- 431 (605)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---- 431 (605)
.-+..+.+.++.......+.+--...|+.-+.. +-+.--.|-..+...|...|.+....++++++......
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 224566788887777777777776766654432 11111223456778888888999988998888765322
Q ss_pred CCHH-------HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH-----HHccCCHHHHHHHHHHH
Q 036303 432 PSVF-------TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA-----LCYDGQILKASKLFSDM 499 (605)
Q Consensus 432 ~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 499 (605)
.|.. +|..-+..|..+.+-..-..+|++.+.... .-|.+.... +++- ..+.|++++|..-|-++
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS---AIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS---AIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc---cCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 2222 344556667778888888888888876543 345555443 3333 34678888876655444
Q ss_pred H
Q 036303 500 R 500 (605)
Q Consensus 500 ~ 500 (605)
-
T Consensus 258 F 258 (440)
T KOG1464|consen 258 F 258 (440)
T ss_pred H
Confidence 3
No 378
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.92 E-value=1.3 Score=35.69 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=49.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 036303 125 LIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVAD 204 (605)
Q Consensus 125 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 204 (605)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556666777777777777776654556777777888888777666666655511 11223345555566666
Q ss_pred hHHHHHHHHH
Q 036303 205 VNRALEFYHE 214 (605)
Q Consensus 205 ~~~a~~~~~~ 214 (605)
++++.-+|.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 379
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.74 E-value=70 Score=31.48 Aligned_cols=67 Identities=10% Similarity=0.011 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC-ChhHHHHHHHHHHhCC
Q 036303 82 PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQG-DVMKALNLFDEMIDKG 149 (605)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 149 (605)
.|+..|...+..+.+.+.+.+...+|..|.... +.++..|..........+ +++.|+.+|..-++.+
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 466667666666666666667777777766652 224444444333333333 3667777776666653
No 380
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.42 E-value=1.3 Score=40.31 Aligned_cols=88 Identities=19% Similarity=0.119 Sum_probs=71.2
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhH
Q 036303 484 CYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 561 (605)
...|.++.|++.|...++ +.|. ...|..-..++.+.+++..|+.-+..+++ ++|| ..-|-.-+.+-...|+|++
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 356889999999999998 4454 44677777888899999999999888887 6675 5556666778888999999
Q ss_pred HHHHHHHHHhcCCC
Q 036303 562 AFRCSEFLKESRIG 575 (605)
Q Consensus 562 A~~~~~~~~~~~~~ 575 (605)
|.+.+..+.+++..
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999988653
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.38 E-value=21 Score=27.47 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 492 ASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
..+-+..+...++.|++......+++|.+.+|+..|..+|+-..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44555556666677888888888888888888888888887665
No 382
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.22 E-value=8.3 Score=29.48 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
+..+-+..+....+.|++.+-..-.+++.+.+|+..|.++++-++.+-+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 34445566677889999999999999999999999999999999876443
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.99 E-value=6.1 Score=20.82 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=12.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+..++...|++++|...+++.++
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444445555555555555555543
No 384
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.76 E-value=67 Score=29.68 Aligned_cols=150 Identities=18% Similarity=0.083 Sum_probs=73.0
Q ss_pred hcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----cCCh
Q 036303 64 EMGHIEEALWVYRKIEVLPAIQACNALLNGLIK----KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG----QGDV 135 (605)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 135 (605)
..+++..|...+.......+......+...+.. ..+..+|..+|......| .......+...+.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCH
Confidence 455666666666666433333444555555543 334666777777666554 23333444444443 2366
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhc----cCC
Q 036303 136 MKALNLFDEMIDKGIEPTVVIYTILIHGLCNEN-------KMVEAESMFRSMRECGVVPNLYTYNALMDGYCK----VAD 204 (605)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 204 (605)
.+|...|++..+.|..+...+...+...|..-. +...|...+.+....+ +......+...|.. ..+
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcC
Confidence 777777777777664322122333333333321 1224555555555543 22233333333322 224
Q ss_pred hHHHHHHHHHHHhCC
Q 036303 205 VNRALEFYHEMLHHN 219 (605)
Q Consensus 205 ~~~a~~~~~~~~~~~ 219 (605)
+.+|...|....+.|
T Consensus 207 ~~~A~~wy~~Aa~~g 221 (292)
T COG0790 207 LKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHHHHCC
Confidence 455555555555544
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.65 E-value=63 Score=29.31 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 226 TFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEM 285 (605)
Q Consensus 226 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 285 (605)
++......|...|.+.+|.++.+...... +.+...+..++..+...|+--.+.+.++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455667777888888888887777654 456667777777788888766666666655
No 386
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.29 E-value=66 Score=29.81 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH------ccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC------YDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAK 522 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g 522 (605)
++++..++.+..... .|.+......+.++- ..-+|.....+|+-+.. +.|+++ +.|.-+. .....
T Consensus 272 I~eg~all~rA~~~~-----~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVA-la~~~ 343 (415)
T COG4941 272 IDEGLALLDRALASR-----RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVA-LAMRE 343 (415)
T ss_pred HHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHH-HHHhh
Confidence 455555666555543 344444444433322 22356677777777766 567766 5554443 33344
Q ss_pred CHHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 523 RMLDVMMLLADMIKMG-IVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
-.+.++..++-+...+ +.--...+..-++.+.+.|..++|...|+++..+-++..
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 4667777777665432 222233344557788999999999999999988776543
No 387
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.05 E-value=1.1e+02 Score=31.86 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcC----CCCCHHHHHHHHHHHHhc---------C--C-----hhHHHHHHHHHHHC
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIE----VLPAIQACNALLNGLIKK---------G--K-----FDSVWEFYEEMVLC 113 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~---------~--~-----~~~A~~~~~~~~~~ 113 (605)
+...+-..|.-.|++++|+++.-..+ ..++......++.-|+.. + . -++-..++++|..+
T Consensus 61 AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~k 140 (929)
T KOG2062|consen 61 AALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQK 140 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHH
Confidence 33455567889999999999876663 334444444443333221 1 1 23444555555554
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHC---CCCCC
Q 036303 114 GLVADVVTYGVLIDCCCGQGDVMKALNLFDE-MIDKGIEPTVVIYTILIHGLCNENK-MVEAESMFRSMREC---GVVPN 188 (605)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~---~~~p~ 188 (605)
... +.. |..++.......++ .++++ +.+.. .+....+.++..+....+ -+--.++++.+.+. ...||
T Consensus 141 cl~-d~e-~~~aiGia~E~~rl----d~ie~Ail~~d--~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD 212 (929)
T KOG2062|consen 141 CLD-DNE-YKQAIGIAFETRRL----DIIEEAILKSD--SVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD 212 (929)
T ss_pred hhh-hhH-HHHHHhHHhhhhhH----HHHHHHhcccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC
Confidence 222 212 22222222222222 23333 22221 122233344444333222 22222334433332 33444
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhC
Q 036303 189 LYTYNALMDGYCKVADVNRALEFYHEMLHH 218 (605)
Q Consensus 189 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (605)
|..+..+|.-..+.+.+.++++++.+.
T Consensus 213 ---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 ---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred ---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 556778888999999999999999874
No 388
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.93 E-value=34 Score=31.50 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTML 515 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~ 515 (605)
|.-=+.-|.+..++..|...|.+.++..... ...+...|+.-..+-...|++..|+.=..+++. +.|+.. .|..=.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 3334444555555666666666555543211 122234444444444455555555555555554 444433 333333
Q ss_pred HHHHhcCCHHHHHHHHH
Q 036303 516 RGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 516 ~~~~~~g~~~~A~~~~~ 532 (605)
.++....++++|....+
T Consensus 161 kc~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444555444433
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.82 E-value=13 Score=36.85 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 036303 432 PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTY 511 (605)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 511 (605)
|-...++..+..+...|+...|...+..+....+ ....+....+.....+.|....|..++.+.+... ...+.++
T Consensus 605 p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p----~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~ 679 (886)
T KOG4507|consen 605 PIWLILNEAGLYWRAVGNSTFAIACLQRALNLAP----LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTF 679 (886)
T ss_pred CeEEEeecccceeeecCCcHHHHHHHHHHhccCh----hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHH
Confidence 3333344444445567888888888888776432 1122334456666777778888888888877643 3445577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVR 551 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 551 (605)
..+..++....+.+.|++.|+++++. .| +..+-+.|..
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~--~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKL--TTKCPECENSLKL 718 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhc--CCCChhhHHHHHH
Confidence 78888888888999999999988873 33 4555555443
No 390
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.76 E-value=24 Score=27.62 Aligned_cols=23 Identities=4% Similarity=-0.047 Sum_probs=11.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 036303 479 IIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+.-++.+.++++++.++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344445555555555554444
No 391
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.93 E-value=1.2e+02 Score=31.55 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEE 109 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 109 (605)
+..|. .+..+.-+|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 55665 67777778888888888743
No 392
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.38 E-value=1.2e+02 Score=31.59 Aligned_cols=187 Identities=15% Similarity=0.168 Sum_probs=96.8
Q ss_pred HHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHH---HhcCCH
Q 036303 384 MGLYTEMVIKSLVPD---VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVS-------SLIHGL---FKNGRI 450 (605)
Q Consensus 384 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~---~~~g~~ 450 (605)
..++.+|..+--.|+ ..+...++-.|....+++..+++.+.+... ||..-+. ....++ .+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 344555555422332 334555666677777788878877777653 2211110 011112 235677
Q ss_pred HHHHHHHHHhhhccCCCCCCccHHHHHHHH-------HHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHh
Q 036303 451 SNALNFFLEKTDKTDGGYCSPNHVLYAAII-------QALCYDGQILKASKLFSDMRSDNLRPDNC---TYTTMLRGLLR 520 (605)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~ 520 (605)
+.|+...-.++++.+ .+.||...+..-| ..|...+..+.|.++|+++-+ +.|+.. .+..|+.+..+
T Consensus 260 akAL~~~l~lve~eg--~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEG--PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred HHHHHHHHHHHHhcC--CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 777777777776532 2455543322111 123344566788999999887 667644 34444443332
Q ss_pred c-CCHHHHHH---HHHHHH-HCCCCccHHHHHH---HHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 521 A-KRMLDVMM---LLADMI-KMGIVPDAVINQV---MVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 521 ~-g~~~~A~~---~~~~~~-~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
. .+-.+-.. .+..++ +.|.-.....|-- ...+-.-++|+.+|....+++.+++|+..
T Consensus 336 ~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 336 HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 1 11111111 122222 2232212222222 23344567999999999999999987643
No 393
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.14 E-value=83 Score=29.55 Aligned_cols=236 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HH
Q 036303 291 SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNV----VT 366 (605)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 366 (605)
.|+..+...++.-|....+-+.....-..+... .+.+..++.+.+......++..++... ..|.. ..
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f~~l--------c~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~ 142 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIFFPL--------CHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSI 142 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHHHHH--------HHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhh
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036303 367 FSSLIDGQCKAGNIDAAMGLYTEMVIKS------LVPDVVVFTALIDG--LSKDGNMKETLRLYKEMLEAKITPSVFTVS 438 (605)
Q Consensus 367 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (605)
...++..+.+.+++..+...++.-+..- .+|.......+-.+ |...++++.|..++...+. .|...+-.
T Consensus 143 H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~ 219 (422)
T KOG2582|consen 143 HADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSH 219 (422)
T ss_pred HHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHH
Q ss_pred HHHHHHHh--------cCCH--------HHHHHHHHHhh---hccCCCCCCccHHHHHHHHHHHH----ccCCHHHHHHH
Q 036303 439 SLIHGLFK--------NGRI--------SNALNFFLEKT---DKTDGGYCSPNHVLYAAIIQALC----YDGQILKASKL 495 (605)
Q Consensus 439 ~l~~~~~~--------~g~~--------~~A~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~ 495 (605)
....+|-+ .|+. ..|.+.++.+. ....+...........+++..+. +.++..-|...
T Consensus 220 ~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~a 299 (422)
T KOG2582|consen 220 IHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQA 299 (422)
T ss_pred HHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCC
Q 036303 496 FSDMRSDNLRPDNCTYTTMLRGLLRA----KRMLDVMMLLADMIKMG 538 (605)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 538 (605)
...+.+.++.-=..+|..+--.+... +..++|.+..-+|++.|
T Consensus 300 v~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 300 VSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 394
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.92 E-value=1.3e+02 Score=31.63 Aligned_cols=169 Identities=10% Similarity=0.092 Sum_probs=94.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036303 90 LLNGLIKKGKFDSVWEFYEEMVLCGLVA---DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (605)
=+..+.+.+.+++|+..-+..... .| -.......+..+...|++++|-...-.|... +...|......+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 356677888888888877665443 22 2346677778888888888888888888754 66677777777776
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 036303 167 ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNF 246 (605)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 246 (605)
.++.... +.-+.......+...|..++-.+.. .+. .-|.+.++. .+ ...|..+...-+...+
T Consensus 436 ~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-Wp--~~Lys~l~iisa~~~q------- 497 (846)
T KOG2066|consen 436 LDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-WP--GHLYSVLTIISATEPQ------- 497 (846)
T ss_pred ccccchh---hccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-CC--hhhhhhhHHHhhcchH-------
Confidence 6665432 3333333222345567776666655 222 222222221 12 2222222111111111
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036303 247 FVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK 287 (605)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 287 (605)
..+. ..+......|+..|...+++.+|+.++-....
T Consensus 498 ---~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 498 ---IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred ---HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1111 11222333377888888888888888776653
No 395
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.72 E-value=60 Score=29.27 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=41.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----
Q 036303 231 MDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG---- 306 (605)
Q Consensus 231 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 306 (605)
|++++..+++.++....-+--..--+....+...-|-.|.+.+.+..+.++-..-....-..+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555566666665544433322111122233334444566666666666665555543222333345555544433
Q ss_pred -cCCHHHHHHHH
Q 036303 307 -VGQLEGAEGLL 317 (605)
Q Consensus 307 -~~~~~~A~~~~ 317 (605)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 36666666554
No 396
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.16 E-value=82 Score=29.08 Aligned_cols=116 Identities=9% Similarity=0.032 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----C--
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK----DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN----G-- 448 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g-- 448 (605)
+...|..+|......| .......+...|.. ..+..+|...|+++.+.|..+.......+...+..- +
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 3555566665444443 22223334333333 236677777777777766333222334444444332 1
Q ss_pred -CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCC
Q 036303 449 -RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY----DGQILKASKLFSDMRSDNL 504 (605)
Q Consensus 449 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 504 (605)
+...|...|.++.... +......+...|.. ..++.+|..+|+++.+.|.
T Consensus 169 ~~~~~A~~~~~~aa~~~-------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 169 YDDKKALYLYRKAAELG-------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHhHHHHHHHHHHhc-------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2235666676665532 33344444444432 3367778888877777553
No 397
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.91 E-value=68 Score=27.99 Aligned_cols=26 Identities=8% Similarity=-0.126 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
.++....+.|+.++|.+.|.+.+..+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445667788888888888887644
No 398
>PRK10941 hypothetical protein; Provisional
Probab=71.81 E-value=64 Score=29.30 Aligned_cols=76 Identities=9% Similarity=0.000 Sum_probs=56.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIKMG-IVPDAVINQVMVRGY 553 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~ 553 (605)
.+.+-.+|.+.++++.|.++.+.+.. +.|+. .-+..-.-.|.+.|.+..|..-++..++.- -.|++......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45666778899999999999999998 56654 467777788999999999999999988632 233444444444333
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.35 E-value=23 Score=30.34 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=25.3
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 539 IVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 539 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
..|++.++..++.++...|+.++|.++.+++...-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456777777777777777777777777777777666
No 400
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.83 E-value=9.1 Score=36.93 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=48.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHc
Q 036303 408 GLSKDGNMKETLRLYKEMLEAKITPSVFTV-SSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCY 485 (605)
Q Consensus 408 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 485 (605)
.....+.++.|..++.++++. .|+...| ..-..++.+.+++..|+.=+..+++. .|. ...|..-+.++..
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHHHh
Confidence 344455566666666666654 2333332 22234555555555555555555543 222 2222222333444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 486 DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
.+++.+|...|+.... +.|+..-....+.-|
T Consensus 85 l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 4455555555555554 455555444444444
No 401
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.82 E-value=1.4e+02 Score=31.18 Aligned_cols=252 Identities=15% Similarity=0.077 Sum_probs=130.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 271 KAGNLFEAMSLCSEMEKFEISPDVFTY----NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDME 346 (605)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 346 (605)
..|+..++.+++.-..-..-.+ ...| ..+.-.+...|..+...+++....+..-.+....-.+|.-+++..|..
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa- 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA- 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcccc-
Confidence 3566677777776654321111 1111 122223344455555777776666553222233333444444444432
Q ss_pred HHHHHHHHHhhCCCCcCHHHH--HHHHHHHHhcCCH-HHHHH-HHHHHHHCCCCCCHhhHHH--HHHHHHhcCCHHHHHH
Q 036303 347 KALSVCSQMTEKGVEPNVVTF--SSLIDGQCKAGNI-DAAMG-LYTEMVIKSLVPDVVVFTA--LIDGLSKDGNMKETLR 420 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~-~~a~~-~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~ 420 (605)
-.++|+++++.-...+..+- ..+.-+++..|.+ .+|++ ++.-..+.. ...+... +.-++..-|+-++|..
T Consensus 447 -~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQ---Heki~RGl~vGiaL~~ygrqe~Ad~ 522 (929)
T KOG2062|consen 447 -NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQ---HEKIIRGLAVGIALVVYGRQEDADP 522 (929)
T ss_pred -cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhh---HHHHHHHHHHhHHHHHhhhhhhhHH
Confidence 23455555443112122211 1122233333432 22322 222222211 1122222 2334566778888999
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036303 421 LYKEMLEAKITPSVF--TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSD 498 (605)
Q Consensus 421 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (605)
+.++|.... .|-.. -...++.+|+-.|+...-.+++.-++.. ...|..-...+.-+++-..+++....+.+-
T Consensus 523 lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-----~nDDVrRaAVialGFVl~~dp~~~~s~V~l 596 (929)
T KOG2062|consen 523 LIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-----VNDDVRRAAVIALGFVLFRDPEQLPSTVSL 596 (929)
T ss_pred HHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-----cchHHHHHHHHHheeeEecChhhchHHHHH
Confidence 999998753 22222 2345566777788877777777665553 244555555556667777888888888886
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 499 MRSDNLRPDNC--TYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 499 ~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+.+. ..|-.. +-..|.-+|+-.|. .+|+.+++.|..
T Consensus 597 Lses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 597 LSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred Hhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 6653 444433 33345556766665 789999998875
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.46 E-value=25 Score=22.36 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=14.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPDNC 509 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (605)
.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 3345555666666666665555 455544
No 403
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.41 E-value=83 Score=28.41 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-------HHHHHHHHhcCCHHHHHHHH
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTY-------NILIKGLCGVGQLEGAEGLL 317 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~A~~~~ 317 (605)
+.+-..+.+++++|+..+.++...|+..|..+. ..+...|...|++....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 455566778888888888888887776665433 34555566666655544444
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.79 E-value=20 Score=26.17 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCc----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 520 RAKRMLDVMMLLADMIKM----GIVP----DAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
+.|++.+|.+.+.+..+. +... -......++......|++++|...++.+.+.-
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 556666665555544321 1111 12233445666777777777777777766553
No 405
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.04 E-value=1.6e+02 Score=30.83 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=13.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPD 507 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~ 507 (605)
+...|++++|++.++++. +-|.
T Consensus 515 ~~~~g~~~~AL~~i~~L~---liP~ 536 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD---LIPL 536 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT----S-S
T ss_pred HHHcCCHHHHHHHHHhCC---CCCC
Confidence 457788888888877764 5563
No 406
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.86 E-value=1.6e+02 Score=30.60 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHH
Q 036303 119 VVTYGVLIDCCCGQGDVMKALNLFDEM 145 (605)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 145 (605)
+..|. .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56676 566777889999999888443
No 407
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.89 E-value=1.1e+02 Score=28.33 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=63.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH--HHHHHHHHccCC
Q 036303 411 KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY--AAIIQALCYDGQ 488 (605)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 488 (605)
...-..+|.+++++.++.+ ..+|+ --..+.+.|...+|.. ++ ..+..+| ..+..+..+.|+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr-~sqq~qh~~~~~da~~------rR------Dtnvl~YIKRRLAMCARklGr 290 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYR-QSQQCQHQSPQHEAQL------RR------DTNVLVYIKRRLAMCARKLGR 290 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHh-hHHHHhhhccchhhhh------hc------ccchhhHHHHHHHHHHHHhhh
Confidence 3445667888888777643 11121 1122333333333321 11 3344444 234444557899
Q ss_pred HHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNC---TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAV 544 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 544 (605)
..+|.+.++.+.+. .|-.. +...|+.+|....-+.+.-.++.+--+...+.+..
T Consensus 291 lrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~ 347 (556)
T KOG3807|consen 291 LREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAA 347 (556)
T ss_pred HHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHH
Confidence 99999999888763 23222 45578888887777777666665544433333433
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.29 E-value=31 Score=25.18 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=12.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 036303 479 IIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+.......|++++|...++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344455666666666665554
No 409
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.12 E-value=26 Score=25.54 Aligned_cols=33 Identities=18% Similarity=-0.028 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 543 AVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
+....+|+-.|...|+-+.|.+-|+.-+.+=|+
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 333444444455555555555555444444443
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=65.40 E-value=16 Score=33.04 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=39.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 520 RAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
+.|+.++|.++|+.++. +.| ++.++..++......++.-+|-.+|-+++..+|.++.+.
T Consensus 128 ~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 56677777777777666 345 466666677666666777777777777777777766653
No 411
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.65 E-value=1.1e+02 Score=27.82 Aligned_cols=63 Identities=6% Similarity=0.110 Sum_probs=41.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK-SLVPDVVVFTALIDGLSKDGNMKETLRLYK 423 (605)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (605)
.++..+...++..++..+++..-.+++...... +...|...|..++......|+..-...+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 455666666777777777777777777766654 445566777777777777777655544443
No 412
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=63.44 E-value=87 Score=29.12 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHH--HHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLY--AAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+.++.++|+++++++.+...... .|+...| ...++++...|+.+++.+.+++..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~-e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYK-EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455555555555544322111 2333333 2334445556666666666655554
No 413
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=63.07 E-value=9.2 Score=22.21 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 544 VINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
.+|..|+.+-...+++++|..=|+++.++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356677777777777777777777766654
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.10 E-value=16 Score=27.60 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
|..++..|...|.+++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555555544
No 415
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.69 E-value=74 Score=26.64 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=26.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRA 521 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (605)
.+..|.+.|.+++|.+++++..+ .|+......-+....+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 34567888888888888888875 45555444444444443
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.60 E-value=1.6e+02 Score=28.54 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 036303 376 KAGNIDAAMGLYTEMVIKSLVPDVV--VFTALIDGLS--KDGNMKETLRLYKEMLE 427 (605)
Q Consensus 376 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 427 (605)
..+++..|.+++..+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555555555555443 222222 2223333332 23445555555555444
No 417
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.67 E-value=87 Score=27.84 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=17.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036303 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGY 339 (605)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 339 (605)
+....+.|+++++...++++...+...+..-.+.+..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 344444555555555555555544444444444444443
No 418
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.36 E-value=1.2e+02 Score=26.73 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHH
Q 036303 11 YKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNAL 90 (605)
Q Consensus 11 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 90 (605)
+|....-++.++..++..+... .......|+.+...-...+ ..+..-|-..-.-|....-..-
T Consensus 22 PP~s~~~L~~Ll~~i~~~~~~~---------------~~K~~l~~YlLlD~~~~~~--~~~~~~Fa~~f~ip~~~~~~~~ 84 (226)
T PF13934_consen 22 PPKSDNDLRALLDLILSSNVSL---------------LKKHSLFYYLLLDLDDTRP--SELAESFARAFGIPPKYIKFIQ 84 (226)
T ss_pred CccCHHHHHHHHHHHhcCCcCH---------------HHhHHHHHHHHHhcCcccc--ccHHHHHHHHhCCCHHHHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 91 LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
+-.+...+++++|.+.+ ..+...+..-..++.++...|+.+.|..++...... ..+......++.. ..++.+
T Consensus 85 g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 85 GFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCH
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHh----ccCChHHHHHH
Q 036303 171 VEAESMFRSMRECGVVPNLYTYNALMDGYC----KVADVNRALEF 211 (605)
Q Consensus 171 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~ 211 (605)
.+|...-+...+. -....+..++..+. +.+..++-+.+
T Consensus 157 ~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 157 TEAFSFQRSYPDE---LRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHhCchh---hhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 419
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=60.14 E-value=81 Score=24.61 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 526 DVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+...+|.-|.+.|+-.. +..|...+..+...|++.+|.++++.
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 35667888887776553 66777888889999999999888763
No 420
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.00 E-value=25 Score=23.21 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
|......++.++...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455666666666666666666554
No 421
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.27 E-value=1.7e+02 Score=28.10 Aligned_cols=93 Identities=13% Similarity=-0.017 Sum_probs=57.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC--C----CCccHHHHHHHHHH
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLL-RAKRMLDVMMLLADMIKM--G----IVPDAVINQVMVRG 552 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~----~~~~~~~~~~l~~~ 552 (605)
+..+.+.|-+..|.++.+-+...+..-|+......++.|+ +.++++--+++.+..... . .-| ..-..++-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP--n~a~S~aLA 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP--NFAFSIALA 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc--cHHHHHHHH
Confidence 4556678888888888888887443335666666677654 667777777776665431 0 122 233444445
Q ss_pred HHhcCCh---------------hHHHHHHHHHHhcCC
Q 036303 553 YQENGDL---------------KSAFRCSEFLKESRI 574 (605)
Q Consensus 553 ~~~~g~~---------------~~A~~~~~~~~~~~~ 574 (605)
+...++. +.|...+.++...-|
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 5566665 777777777666544
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.21 E-value=85 Score=24.55 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCCCCCH-HhHHHHHHHHHccCChhHHHHHHHH
Q 036303 102 SVWEFYEEMVLCGLVADV-VTYGVLIDCCCGQGDVMKALNLFDE 144 (605)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 144 (605)
.+.++|..|...|+.... ..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777776655433 3566666667777777777777764
No 423
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.13 E-value=1.1e+02 Score=26.93 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 036303 335 LIDGYCKEGDMEKALSVCSQMTEKGVE 361 (605)
Q Consensus 335 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 361 (605)
++-.....|+++.|+++.+.+++.|.+
T Consensus 89 ~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 89 VMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 333456677777777777777777643
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.96 E-value=58 Score=29.21 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-ccHHHHHHHHHHHHhcCChhHHHHHH
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIK----MGIV-PDAVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
....+...|.+.|++++|.++|+.+.. .|.. +...+...+..++.+.|+.+..+.+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344666677788888888888887752 2222 24566677777888888887777643
No 425
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=58.44 E-value=26 Score=19.42 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYT 512 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~ 512 (605)
++.|..+|++.+. ..|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4555555555555 445555544
No 426
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.33 E-value=4.3e+02 Score=32.39 Aligned_cols=326 Identities=10% Similarity=0.004 Sum_probs=174.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 036303 229 VLMDGLCKVGELRAAGNFFVHMAKFGV--FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG 306 (605)
Q Consensus 229 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (605)
.+..+-.+.+.+..|...++.-..... ......+..+...|...++++...-+...-.. .|+ ...-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 455566678888888888887411100 11223344455589999999888877764221 122 2334445677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH-HHHHHhcCCHHHHHH
Q 036303 307 VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSL-IDGQCKAGNIDAAMG 385 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 385 (605)
.|++..|...|+.+.+.+ ++...+++.++......+.++..+-..+-..... .+....++.+ ..+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 3346677777777777788888777666655542 2233333322 333356677776666
Q ss_pred HHHHHHHCCCCCCHhhHHHH--HHHHHhc--CCHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCCHHH
Q 036303 386 LYTEMVIKSLVPDVVVFTAL--IDGLSKD--GNMKETLRLYKEMLEA--------KITPS-VFTVSSLIHGLFKNGRISN 452 (605)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l--~~~~~~~--g~~~~a~~~~~~~~~~--------~~~~~-~~~~~~l~~~~~~~g~~~~ 452 (605)
... .. +..+|... +....+. .+.-.-....+.+.+. ...-+ ...|..++....-. +.+.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH
Confidence 554 11 22233222 2222221 1211111222222221 11101 11222222221111 1111
Q ss_pred HHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH-hCCCCC-----CHHHHHHHHHHHHhcCCHHH
Q 036303 453 ALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR-SDNLRP-----DNCTYTTMLRGLLRAKRMLD 526 (605)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p-----~~~~~~~l~~~~~~~g~~~~ 526 (605)
..+.+.... .+....-+...|..-+..-....+..+-+--+++.. .....| -..+|...++.+..+|+++.
T Consensus 1612 ~~~~l~~~s---~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1612 SIEELKKVS---YDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHhhccC---ccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111111111 111112222334333322222222333332233222 111222 23589999999999999999
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 527 VMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 527 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
|...+-++.+.+ -+.++--.+..+...|+...|..+++...+++-++
T Consensus 1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 999888887654 35667778889999999999999999999765444
No 427
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.17 E-value=1.8e+02 Score=28.00 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIE-----VLPAIQACNALLNGLIKKGKFDSVWEFYEE 109 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 109 (605)
+..++.-|...|+++.|++.|-++. ....+..|..++..-+-.|+|......-.+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~ 212 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISK 212 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Confidence 3444444444555555555444431 112233344444444444444444443333
No 428
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.10 E-value=74 Score=23.51 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=21.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 036303 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHN 219 (605)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (605)
+...|++++|..+.+.+. -||...|.++.. .+.|..+....-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 444555555554444331 244444433322 23444444444444444443
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.95 E-value=31 Score=22.81 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=8.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 036303 160 LIHGLCNENKMVEAESMFRSM 180 (605)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~ 180 (605)
++.++...|++++|.++++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 430
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=57.78 E-value=2.6e+02 Score=29.77 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=52.8
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 036303 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLC---NENKMVEAESMFRSMRECGVVPNLYTYNA 194 (605)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 194 (605)
+...+..||..+.+.|++++....-..|.+. .+.++..|...+.-.. ..+...++...|++...... ++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHH
Confidence 4556667777777778777766666666554 2445566655554433 23555666666666554321 3344555
Q ss_pred HHHHHhcc-------CChHHHHHHHHHHHh
Q 036303 195 LMDGYCKV-------ADVNRALEFYHEMLH 217 (605)
Q Consensus 195 l~~~~~~~-------~~~~~a~~~~~~~~~ 217 (605)
.+...... ++++....+|.+.+.
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 55444322 334444555555443
No 431
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=57.72 E-value=1.7e+02 Score=27.45 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=26.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhC--CCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 268 GHCKAGNLFEAMSLCSEMEKF--EISPDVF-------TYNILIKGLCGVGQLEGAEGLLQKM 320 (605)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (605)
.....++.+++..++..+... |...+.. +...+...+.+.|+.++-..++...
T Consensus 13 ~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~ 74 (411)
T KOG1463|consen 13 NLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSL 74 (411)
T ss_pred HhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 344455667777777776652 2222221 2233444555556555555544443
No 432
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.60 E-value=1.8e+02 Score=27.91 Aligned_cols=144 Identities=9% Similarity=0.003 Sum_probs=77.1
Q ss_pred HHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHH
Q 036303 62 FSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNL 141 (605)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 141 (605)
....++++.-..++.+.+ --+.+...+...+..+|+.+.|.+++++++-.- ..++......+........+.
T Consensus 20 ~v~~~Dp~~l~~ll~~~P--yHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 20 AVQSHDPNALINLLQKNP--YHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred HHHccCHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCccc--
Confidence 344456666666664443 345567777777788888888888777765320 111111111100000000000
Q ss_pred HHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh-ccCChHHHHHHHHHHHh
Q 036303 142 FDEMIDKGIEPTVVIYT---ILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC-KVADVNRALEFYHEMLH 217 (605)
Q Consensus 142 ~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 217 (605)
+.-...-|...|. ..+..+.+.|-+..|.++.+-+...++.-|+.....+|..|+ +.++++--+++++....
T Consensus 92 ----L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 92 ----LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ----cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 0000112333333 234566777888888888888887765555666666666655 66777777777776544
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.63 E-value=67 Score=27.42 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 491 KASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...+..++..+ ..|++.+|..++.++...|+.++|.+...++..
T Consensus 129 ~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 129 AYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555554 678999999999999999999999998888876
No 434
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.58 E-value=1.5e+02 Score=26.61 Aligned_cols=163 Identities=10% Similarity=0.013 Sum_probs=87.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG-RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG 487 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 487 (605)
+.+......|+++-...+..+ +.+..+|..-...+...+ ++.+-++.+.++.... +.|-..|..--...-..|
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-----pKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-----PKNYQVWHHRRVIVELLG 126 (318)
T ss_pred HhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-----ccchhHHHHHHHHHHHhc
Confidence 345556667777777777654 344444443333333222 5666677777776653 455566654433334445
Q ss_pred CHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-cCC-----hh
Q 036303 488 QIL-KASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQE-NGD-----LK 560 (605)
Q Consensus 488 ~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~-----~~ 560 (605)
++. .-+++.+.|.... .-+.+.|..--+++..-++++.-+.+..++++..+.- ..+|+.-.-.... .|= .+
T Consensus 127 d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N-NSAWN~Ryfvi~~~~~~~~~~~le 204 (318)
T KOG0530|consen 127 DPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN-NSAWNQRYFVITNTKGVISKAELE 204 (318)
T ss_pred CcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cchhheeeEEEEeccCCccHHHHH
Confidence 554 5556666666522 2355566666677766677777777777777654442 2333322111111 121 22
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 036303 561 SAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 561 ~A~~~~~~~~~~~~~~~~~ 579 (605)
.-+.+..+..+..|.+.++
T Consensus 205 ~El~yt~~~I~~vP~NeSa 223 (318)
T KOG0530|consen 205 RELNYTKDKILLVPNNESA 223 (318)
T ss_pred HHHHHHHHHHHhCCCCccH
Confidence 3334555666666666655
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.53 E-value=3e+02 Score=30.04 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 156 IYTILIHGLCNENKMVEAESMFRSMREC 183 (605)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (605)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3667777888888888888888877663
No 436
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.48 E-value=1.6e+02 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=16.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 257 PNIFVYNCLIDGHCKAGNLFEAMSLC 282 (605)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 282 (605)
.++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35566677777788888887777665
No 437
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=55.89 E-value=45 Score=32.37 Aligned_cols=31 Identities=10% Similarity=-0.092 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
+++.-+....+.+++..|..+.+++++++|+
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 4445555666777777777777777776664
No 438
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.78 E-value=76 Score=22.97 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 83 AIQACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
+..+...+...+...|+++.|++.+-.+++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444443
No 439
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.76 E-value=1.8e+02 Score=27.23 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=57.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH-----CCCCcc-HHHHH
Q 036303 479 IIQALCYDGQILKASKLFSDMRSD---NLRPDNCTYTT--MLRGLLRAKRMLDVMMLLADMIK-----MGIVPD-AVINQ 547 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~-~~~~~ 547 (605)
++...-+.++.++|++.++++.+. .-.|+...|.. ....+...||.+++.+.+.+..+ .+++|+ ...|+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 334444567899999999998863 34567665543 44556678999999999888876 567664 33344
Q ss_pred HHH-HHHHhcCChhHHHH
Q 036303 548 VMV-RGYQENGDLKSAFR 564 (605)
Q Consensus 548 ~l~-~~~~~~g~~~~A~~ 564 (605)
.+. .-|..-|++..+.+
T Consensus 161 ~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 444 44556677766654
No 440
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.76 E-value=74 Score=22.79 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=7.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 036303 166 NENKMVEAESMFRSMR 181 (605)
Q Consensus 166 ~~~~~~~a~~~~~~~~ 181 (605)
..|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3344555555555544
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.78 E-value=2.1e+02 Score=27.64 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMT 356 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 356 (605)
.+..+...|...|+++.|.+.|.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~R 177 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRAR 177 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhh
Confidence 34445555555555555555555543
No 442
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=54.72 E-value=1.9e+02 Score=27.17 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHH
Q 036303 415 MKETLRLYKEMLEAKI----TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQIL 490 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 490 (605)
...|.+.|+.....+. ..++.....+.....+.|..+.-..+++.... .++...-..++.+++...+.+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-------~~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-------STSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-------TSTHHHHHHHHHHHTT-S-HH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-------cCCHHHHHHHHHhhhccCCHH
Confidence 4567788888877422 34555556666666677776554444444443 345666678888888888888
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHHH----HHHCCCCccHHHHHHHHHHHHhcCChhHHH
Q 036303 491 KASKLFSDMRSDN-LRPDNCTYTTMLRGLLRAKRM--LDVMMLLAD----MIKMGIVPDAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 491 ~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
...++++.+...+ +++.. . ..++..+...+.. +.+.+++.. +.+ ....+......++..+......++-.
T Consensus 219 ~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~-~~~~~~~~~~~~~~~~~~~~~t~~~~ 295 (324)
T PF11838_consen 219 LLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIK-KFGTNSSALSRVIKSFAGNFSTEEQL 295 (324)
T ss_dssp HHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHC-HC-TTSHCCHHHHHCCCTT--SHHHH
T ss_pred HHHHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHhccCCCHHHH
Confidence 8889999888743 43333 3 2344444423332 566555443 331 22222224444554444433344444
Q ss_pred HHHHHHHhcCCCCCCCCccchhhhhh
Q 036303 564 RCSEFLKESRIGSSETEGHTTRSFLG 589 (605)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (605)
.-++...+..++..+.....+...++
T Consensus 296 ~~~~~f~~~~~~~~~~~~r~l~q~~e 321 (324)
T PF11838_consen 296 DELEEFFEDKPKPPPGLRRALAQSLE 321 (324)
T ss_dssp HHHHHHHHHHCTCCCTTTHHCHHHHH
T ss_pred HHHHHHHhhCcCCChHHHHHHHHHHH
Confidence 55555555455555554444444443
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.52 E-value=79 Score=28.38 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCC-CCccHHHHHHHHHHHHccCCHHHHHHH
Q 036303 438 SSLIHGLFKNGRISNALNFFLEKTDKTDGGY-CSPNHVLYAAIIQALCYDGQILKASKL 495 (605)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 495 (605)
..++..|.+.|++++|.++|+.+.......| ..+...+...+..++...|+.+..+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445556666666666666666544332221 122233334444444555555554444
No 444
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.68 E-value=2.5e+02 Score=28.37 Aligned_cols=158 Identities=12% Similarity=0.092 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC----CCC-----------HHHHHHHHHHHHhcCC----hhHHHHHHHHHHHCC
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIEV----LPA-----------IQACNALLNGLIKKGK----FDSVWEFYEEMVLCG 114 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----------~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~ 114 (605)
+...+-..|...|++++|+.+.-..+. ..+ ++.|-.........++ -..---+++.+....
T Consensus 61 aaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc 140 (926)
T COG5116 61 AALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKC 140 (926)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHH
Confidence 445566779999999999998766531 112 2222222222222333 111222344444332
Q ss_pred CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCcccHH
Q 036303 115 LVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAE-SMFRSMRECGVVPNLYTYN 193 (605)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~p~~~~~~ 193 (605)
+..+. +..++..... .--+++++..+..|.+ ....+.++......+.-.+-+ ++++.+.+.++.-....|.
T Consensus 141 ~~~se--~~~~lgIa~e----g~rldiie~~l~~~~d--~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf 212 (926)
T COG5116 141 VDDSE--IGYLLGIAAE----GLRLDIIEKYLSDGND--CDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYF 212 (926)
T ss_pred hhHHH--HHHHHHHHHH----HHHHHHHHHHHhCCCc--ccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEE
Confidence 22111 1111111111 1123455556665433 334455555554444333333 4455555554322223355
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHN 219 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (605)
.++.++....+.+.|.++++++.+.+
T Consensus 213 ~v~k~vv~LnDa~~a~~L~~kL~~en 238 (926)
T COG5116 213 YVIKAVVYLNDAEKAKALIEKLVKEN 238 (926)
T ss_pred EEeEEEEEeccHHHHHHHHHHHHhhh
Confidence 56777778888888888888887653
No 445
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.37 E-value=14 Score=28.71 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 486 DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
.|.-..|-.+|++|++.|.+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3556678899999999998888 466666554
No 446
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.69 E-value=18 Score=28.17 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 036303 168 NKMVEAESMFRSMRECGVVPNLYTYNALMD 197 (605)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 197 (605)
|.-.+|..+|+.|++.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 333444555555555554443 3444443
No 447
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=1.9e+02 Score=26.08 Aligned_cols=219 Identities=12% Similarity=0.053 Sum_probs=113.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH-HHH
Q 036303 342 EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK-AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMK-ETL 419 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~ 419 (605)
.....+|+++-+.++..++. +-.+|..--.++.. ..+..+-++.+.++.... +-+-..|..--......|++. .-+
T Consensus 56 ~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred cccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchH
Confidence 33456677777777665322 22222211111111 124666677777777664 224444444333334455655 667
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc-cCC-----HHHHH
Q 036303 420 RLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY-DGQ-----ILKAS 493 (605)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~-----~~~A~ 493 (605)
++.+.|+..+ ..+..+|..--.++..-+.++.-+.+..++++.. ..|..+|+.-.-.... .|- .+.-+
T Consensus 134 ef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D-----i~NNSAWN~Ryfvi~~~~~~~~~~~le~El 207 (318)
T KOG0530|consen 134 EFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEED-----IRNNSAWNQRYFVITNTKGVISKAELEREL 207 (318)
T ss_pred HHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh-----hhccchhheeeEEEEeccCCccHHHHHHHH
Confidence 7788888754 4566677766667777778888888888887764 3344445432111111 121 22233
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHh-cC--CHHHHHHHHHHHHHCCCCccHHHHHHHHHHH------HhcCChh---
Q 036303 494 KLFSDMRSDNLRPDNC-TYTTMLRGLLR-AK--RMLDVMMLLADMIKMGIVPDAVINQVMVRGY------QENGDLK--- 560 (605)
Q Consensus 494 ~~~~~~~~~~~~p~~~-~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~g~~~--- 560 (605)
.+..+++. ..|+.. .|+.|...+.. .| ...+...+...+......-.+.....+++.| .+++.-+
T Consensus 208 ~yt~~~I~--~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~ 285 (318)
T KOG0530|consen 208 NYTKDKIL--LVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELAR 285 (318)
T ss_pred HHHHHHHH--hCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHH
Confidence 44444444 456555 67666666653 44 2445555666655111112355555555555 2445545
Q ss_pred HHHHHHHHHH
Q 036303 561 SAFRCSEFLK 570 (605)
Q Consensus 561 ~A~~~~~~~~ 570 (605)
+|.++++.+.
T Consensus 286 ~a~~ly~~La 295 (318)
T KOG0530|consen 286 KAVKLYEDLA 295 (318)
T ss_pred HHHHHHHHHh
Confidence 4555555554
No 448
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.00 E-value=4e+02 Score=29.88 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhc
Q 036303 52 PSVFSTLIIAFSEMGHIEEALWVYRKI 78 (605)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (605)
+..-.+++.+|...|..-+|++.|.++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHH
Confidence 334456777788999999999998876
No 449
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.82 E-value=1e+02 Score=29.94 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHH-------HHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSD-------MRSDNLRP-----DNCTYTTMLRGLLRAKRMLDVMMLLADM----- 534 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 534 (605)
+......++..++...+..+-.+..+. .-+.|-.| ...+.-.|++..+-.||+..|++.++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred -HHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036303 535 -IKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLK 570 (605)
Q Consensus 535 -~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 570 (605)
+=..+++ ...++..++-+|.-.+++.+|.+.|..+.
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.14 E-value=4.3e+02 Score=30.01 Aligned_cols=166 Identities=11% Similarity=0.050 Sum_probs=105.8
Q ss_pred HHHHHhcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC---CCCCccHHHH
Q 036303 406 IDGLSKDGNMKETLR------LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG---GYCSPNHVLY 476 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~ 476 (605)
.+.....|.+.++.+ ++......-.++....+..+...+.+.|+.++|+..-.++.-.... -..+.+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344455566666666 5553333333555667888888889999999998877655432211 1112334456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC--cc
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSD-----N-LRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKM-----GIV--PD 542 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~ 542 (605)
..+...+...+....|...+.++... | ..|... ++..+-..+-..++++.|.++++.+.+. |.. ++
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 56655566666778888887777652 2 245444 4444444444568889999998888652 211 24
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 543 AVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
..++..+++.+...+++..|....+....
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 67788889999999999998876665443
No 451
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.11 E-value=2.1e+02 Score=32.17 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=81.8
Q ss_pred HHHhcCCHHHHHH------HHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCCHhhHHH
Q 036303 338 GYCKEGDMEKALS------VCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMV-------IKSLVPDVVVFTA 404 (605)
Q Consensus 338 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ 404 (605)
.....|.+.++.+ ++......-.++....|..+...+.+.|+.++|+..-.... ...-+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3344555555555 45432222234456677778888888888888877544332 1111123334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC---CccHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEA-----K--ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC---SPNHV 474 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ 474 (605)
+...+...++...|...+...... + .||...+...+...+...++.+.|+++.+.+......-.. -++..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 555555555666666666555432 1 2333334444444455557778888887777663221111 22334
Q ss_pred HHHHHHHHHHccCCHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKL 495 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~ 495 (605)
++..+.+.+...+++..|...
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 444555555555555444433
No 452
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.42 E-value=1.7e+02 Score=25.82 Aligned_cols=36 Identities=8% Similarity=-0.133 Sum_probs=27.9
Q ss_pred HHHHHHHHHHH---------HhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 543 AVINQVMVRGY---------QENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 543 ~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
...|...+..+ ...++...|...++++.+++|+...
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 55666777777 3557888999999999999987553
No 453
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.34 E-value=57 Score=29.79 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=21.5
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 036303 505 RPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP 541 (605)
Q Consensus 505 ~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 541 (605)
.||.. .|+..+....+.||+++|+.+++++.+.|+.-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 34444 34466666666666666666666666666543
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.24 E-value=2.2e+02 Score=26.00 Aligned_cols=100 Identities=8% Similarity=0.020 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY-AAIIQALCYDGQILKASKLFSDMRSDNLRPDNC--- 509 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--- 509 (605)
..++..++..|++-++.+.+.+...+........|.+-|...- ..++..|....-.++-++..+.+.+.|-.-+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4456666666677777777777666666655444444443321 122222333333455666666666655332211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 510 -TYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 510 -~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
+|..+ -+....++.+|..++.+.+
T Consensus 195 K~Y~Gi--~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGI--FKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHH--HHHHHHhhHHHHHHHHHHh
Confidence 22211 1223345666666655554
No 455
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.36 E-value=2.5e+02 Score=26.36 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-HHH
Q 036303 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKI-TP--SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-HVL 475 (605)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~ 475 (605)
..|..=.+-|.+..++..|...|.+-++... .| +...|+.-..+-...|++..|+.=...++.. .|+ .-.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------~P~h~Ka 155 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------KPTHLKA 155 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------Ccchhhh
Confidence 4566667778899999999999999887641 22 2334555556666788999999988888774 444 344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
|-.-..++....++++|..+.++..
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 4444556667777888888777664
No 456
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.96 E-value=4.5e+02 Score=29.30 Aligned_cols=154 Identities=14% Similarity=0.016 Sum_probs=83.8
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhccCCCCCCccHHH
Q 036303 397 PDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISN-ALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 397 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
+|...-...+.++...+..+. +..... .++..+-.....++...+..+. +...+..+.. .++...
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~-------D~d~~V 791 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG-------DPDPLV 791 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc-------CCCHHH
Confidence 354444455555555444321 222222 4566666666666666554332 3444444443 345555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQE 555 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 555 (605)
-...+.++...|....+...+..+++ .++...-...+.++...+. +++...+..+++ .|+..+-...+.++.+
T Consensus 792 R~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 792 RAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhc
Confidence 56666777777765555444555553 3455555556666666654 455566665653 4566666666777766
Q ss_pred cCChhHHHHHHHHHHh
Q 036303 556 NGDLKSAFRCSEFLKE 571 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~ 571 (605)
.+.-..+...+..+.+
T Consensus 865 ~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 865 WPGDPAARDALTTALT 880 (897)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 5434456666665554
No 457
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.29 E-value=3.4e+02 Score=27.67 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred CcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc-----------------------CCCCCHHHHHHH---HHHHHhcC
Q 036303 45 LEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI-----------------------EVLPAIQACNAL---LNGLIKKG 98 (605)
Q Consensus 45 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------------------~~~~~~~~~~~l---~~~~~~~~ 98 (605)
+...|.-......++..+..+|+.+.|..+.++. ..+.|...|..+ ++.+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-ccCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCC---HH
Q 036303 99 KFDSVWEFYEEMVLCGLVADVVTYGVLIDCCC-GQGDVMKALNLFDEMIDK---GIEPTVVIYTILIHGLCNENK---MV 171 (605)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~ 171 (605)
-+..|+++-.-+....+.-|+.....+|..|+ +..+++-.+++++..... ..-|+-..-.+++..|..... -.
T Consensus 357 C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rq 436 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQ 436 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHH
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 036303 172 EAESMFRSMRECGVVPNLYTYNALMDGY 199 (605)
Q Consensus 172 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 199 (605)
.|...+.+.... -+...+-|+..+
T Consensus 437 sa~~~l~qAl~~----~P~vl~eLld~~ 460 (665)
T KOG2422|consen 437 SALNALLQALKH----HPLVLSELLDEL 460 (665)
T ss_pred HHHHHHHHHHHh----CcHHHHHHHHhc
No 458
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.82 E-value=2.9e+02 Score=26.81 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=8.6
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 036303 341 KEGDMEKALSVCSQMTEK 358 (605)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~ 358 (605)
..+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 444445555555444443
No 459
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.41 E-value=2.9e+02 Score=26.67 Aligned_cols=66 Identities=15% Similarity=-0.075 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIK--MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..+.|++.|...+.++.|..+..+..- ..... -+..+..++++..-++++..|.+.+-.+..+.|.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 344444555555555555544433220 00000 0223344455555556666666655555555554
No 460
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=44.92 E-value=1.2e+02 Score=21.99 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChh
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLK 560 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 560 (605)
|...-..+...+...|++++|++.+-.+++..-.. +...-..++.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 33455566666777777777777766666533222 3445555666666666543
No 461
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.83 E-value=1.3e+02 Score=22.35 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=20.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 94 LIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
+..+|+|++|..+.+.+ ..||...|..+ +-.+.|-.+++..-+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhC
Confidence 33445555554444333 23344444332 223344444444444444443
No 462
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.58 E-value=4.9e+02 Score=29.04 Aligned_cols=125 Identities=12% Similarity=0.033 Sum_probs=58.3
Q ss_pred CHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH
Q 036303 398 DVVVFTALIDGLSKDGNMKE-TLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY 476 (605)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (605)
+...-...+.++...+..+. +...+..+.. .++..+-...+.++...|..+.+...+..++. .++...-
T Consensus 755 ~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~-------d~d~~VR 824 (897)
T PRK13800 755 NREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR-------ASAWQVR 824 (897)
T ss_pred CHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc-------CCChHHH
Confidence 44444444555554443322 2333334433 34555556666666666655444344444443 2333333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...+.++...+. +++...+-.+.+ .|+...-...+.++.+.+....+...+..+++
T Consensus 825 ~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 825 QGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 344555555443 344455544443 34555555555555553223345555555553
No 463
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.21 E-value=3.4e+02 Score=27.03 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=86.1
Q ss_pred HhcCCHHHHHHHHHHHhhCC-CCcCH-------HHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHH
Q 036303 340 CKEGDMEKALSVCSQMTEKG-VEPNV-------VTFSS-LIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVF--TALIDG 408 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~ 408 (605)
.-.|++.+|++-...|.+.- -.|.+ ..... +...++..+.++.|..-|....+.--.-|...+ ..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 45688888888877776641 11221 11122 223344567888888888777655323333332 234556
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHHHHHH
Q 036303 409 LSKDGNMKETLRLYKEMLEAK-ITPSVF-----TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYAAIIQ 481 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 481 (605)
|.+.|+.+.-.++++.+-..+ .+.+.. .+...+-.....+++.+|..++.+.++.....+. ....-....+..
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 778777666666655543221 111111 1111122235788999999999988775422111 111122233444
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 036303 482 ALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~ 500 (605)
.+...|+..++.++..-..
T Consensus 494 v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHhcchHHHHhccchHH
Confidence 5556788888777765544
No 464
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.86 E-value=50 Score=17.44 Aligned_cols=14 Identities=14% Similarity=0.276 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHC
Q 036303 100 FDSVWEFYEEMVLC 113 (605)
Q Consensus 100 ~~~A~~~~~~~~~~ 113 (605)
++.|..+|+++...
T Consensus 3 ~~~~r~i~e~~l~~ 16 (33)
T smart00386 3 IERARKIYERALEK 16 (33)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 465
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.75 E-value=5.2e+02 Score=29.11 Aligned_cols=133 Identities=8% Similarity=0.045 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC----TYT 512 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~ 512 (605)
|..+++.+-+.+..+.+.++-..+++..+... +.-..+++++.+.....|.+-+|.+.+-+ .||.. ...
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~-ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDN-PSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 45566667777888888888877777654322 22234556677777777777777655432 34433 456
Q ss_pred HHHHHHHhcCCHHH------------HHH-HHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHH-HHHHHHhcCCCC
Q 036303 513 TMLRGLLRAKRMLD------------VMM-LLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR-CSEFLKESRIGS 576 (605)
Q Consensus 513 ~l~~~~~~~g~~~~------------A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~ 576 (605)
.++-.+...|.++. ... +++...+.........|..|--.+...+++.+|-. .|+.+..++.+.
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~ 1136 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESET 1136 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccc
Confidence 66666666665443 233 22222222211234455555556677788877766 566666655443
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.57 E-value=1.5e+02 Score=23.86 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 108 EEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNEN 168 (605)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (605)
..+.+.|+.+++ .-..++..+...++.-.|.++++.+.+.++..+..+-..-+..+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455555433 233445555566566777777777776655554443333334444433
No 467
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.33 E-value=1.4e+02 Score=22.51 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=13.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 122 YGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 122 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555555444
No 468
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.79 E-value=2.8e+02 Score=29.93 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHCCCCcc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 525 LDVMMLLADMIKMGIVPD--AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+.+.++..-.....+.|- .-+....+..+.+.+++..|..+..++++..|..+.+
T Consensus 1064 ~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1064 EQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 333333333344456663 4455667778888888888888888888888766554
No 469
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=42.08 E-value=2.1e+02 Score=27.58 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=33.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 122 YGVLIDCCCGQGDVMKALNLFDEMIDK--GIEPTVVIYTILIHGLCNENKMVEAESMFRSMR 181 (605)
Q Consensus 122 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (605)
...|++.+.-.||+....+.++.+.+. |..|...+--.+.-+|.-.+++.+|.+.|-..+
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 334556666667766666666665543 222222111334556666677777777776554
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.02 E-value=1.2e+02 Score=24.45 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=11.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCC
Q 036303 195 LMDGYCKVADVNRALEFYHEMLHHN 219 (605)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (605)
++..+...++.-.|.++|+.+.+.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3444444444444445555544443
No 471
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.97 E-value=3.3e+02 Score=26.37 Aligned_cols=61 Identities=13% Similarity=-0.038 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLC--GLVADVVTYGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
...|++...-.|+++...+.++.+.+. |..|...+-..+.-+|...|++.+|.++|-.++-
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788977777777776554 2233222224456678889999999999988764
No 472
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=41.96 E-value=8.5 Score=39.07 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHH
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRG--LLRAKRMLDVMMLLADMIKMGIVPD--AVINQVMVRGYQ 554 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 554 (605)
.+.++...|++..|..++.++....+.|.......++.+ ....|+++.|+..+.......+++. ...+...+.+|.
T Consensus 30 Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~ 109 (536)
T PF04348_consen 30 AARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYE 109 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHH
Confidence 345566677777777777776644444544444444443 3346777777777664322223332 344455566777
Q ss_pred hcCChhHHHHHHHHHHhcC--CCCCCCCccchhhhhhccccc
Q 036303 555 ENGDLKSAFRCSEFLKESR--IGSSETEGHTTRSFLGHLKPT 594 (605)
Q Consensus 555 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 594 (605)
..|++-+|.+.+-.+-..- +.........++..|..+-..
T Consensus 110 ~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~~ 151 (536)
T PF04348_consen 110 QQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPPE 151 (536)
T ss_dssp ------------------------------------------
T ss_pred hcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCHH
Confidence 7777766666544433321 233334445555555554443
No 473
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=41.41 E-value=2.8e+02 Score=25.41 Aligned_cols=116 Identities=6% Similarity=0.045 Sum_probs=73.3
Q ss_pred ChhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHc-cC-ChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036303 99 KFDSVWEFYEEMVL-CGLVADVVTYGVLIDCCCG-QG-DVMKALNLFDEMIDK-GIEPTVVIYTILIHGLCNENKMVEAE 174 (605)
Q Consensus 99 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (605)
-..+|+.+|+.... ..+-.|..+...+++.... .+ ....--++.+-+... +..++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 1233466666666666655 22 222222333333322 34667778888888888899998888
Q ss_pred HHHHHHHHC-CCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 036303 175 SMFRSMREC-GVVPNLYTYNALMDGYCKVADVNRALEFYHE 214 (605)
Q Consensus 175 ~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 214 (605)
+.++..... ++.-|...|..+|..-...|+..-...+.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888877655 5566888888899888888887665555543
No 474
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.61 E-value=3.1e+02 Score=25.62 Aligned_cols=38 Identities=18% Similarity=0.006 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV 474 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (605)
+......|++-|+-+.|.+.+.+...+...-|.+-|..
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 34444445555555555555554444433333344433
No 475
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.66 E-value=3.3e+02 Score=25.71 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNC----TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQ 554 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 554 (605)
.+++..++..++. -.|+.. .|-.++......|.+++++.+|+.++..|..|-...-..+++++-
T Consensus 119 ~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4567777777776 346643 566667777778888899999999998888887777666777655
No 476
>PRK09857 putative transposase; Provisional
Probab=38.88 E-value=2.5e+02 Score=26.06 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036303 123 GVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVV 186 (605)
Q Consensus 123 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (605)
..++......|+.++..++++.+.+. .+........++.-+.+.|..+++.++..+|...|+.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444444445555555555555443 1222223333444444444444444444444444433
No 477
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.45 E-value=2.4e+02 Score=23.78 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=9.6
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 036303 163 GLCNENKMVEAESMFRSMRE 182 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~ 182 (605)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34444555555555544443
No 478
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.38 E-value=2.5e+02 Score=29.02 Aligned_cols=91 Identities=11% Similarity=0.149 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHccCChh------HHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 89 ALLNGLIKKGKFDSVWEFYEEMVLCGL--VADVVTYGVLIDCCCGQGDVM------KALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
+++.+|...|++-++.++++.+...+- +--...+|..++..++.|.++ .|.+.++... +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 788888889999888888888876521 122346777777788888664 2333333333 34466667666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 036303 161 IHGLCNENKMVEAESMFRSMRE 182 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~ 182 (605)
+.+-...-+-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 5554442222223334444443
No 479
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=37.78 E-value=62 Score=29.57 Aligned_cols=76 Identities=7% Similarity=0.043 Sum_probs=45.5
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTT-MLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVIN 546 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 546 (605)
..|+..|...+..-.+.|.+.+...++.++.. ..|+.. .|-. -.--+...++++.+..++.+.++ +.| ++.+|
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~--khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR--~N~~~p~iw 179 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLT--KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR--MNSRSPRIW 179 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc--cCCCCchHH
Confidence 55666676666655566777777777777776 455444 3321 11123356777777777777776 334 35555
Q ss_pred HHH
Q 036303 547 QVM 549 (605)
Q Consensus 547 ~~l 549 (605)
...
T Consensus 180 ~ey 182 (435)
T COG5191 180 IEY 182 (435)
T ss_pred HHH
Confidence 543
No 480
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.72 E-value=3.5e+02 Score=25.33 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVI----KSLVPDVVVFTA-LIDGLSKDGNMKETLRLYKEMLEAKITPSVF--- 435 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 435 (605)
...+......|++.|+-+.|++.++.... .|.+.|+..+.. +.-.|....-..+-++..+.+.+.|-..+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34566677888999998888887765544 355556554433 2222334333455555566666665433322
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q 036303 436 -TVSSLIHGLFKNGRISNALNFFLEKTDKTD 465 (605)
Q Consensus 436 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (605)
+|..+. +....++.+|-.+|-+.+....
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHccccc
Confidence 333332 2344578888888888777653
No 481
>PRK12798 chemotaxis protein; Reviewed
Probab=37.65 E-value=4e+02 Score=26.01 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 036303 272 AGNLFEAMSLCSEMEKFEISPDVFTYNILIKGL-CGVGQLEGAEGLLQKMY 321 (605)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~ 321 (605)
.|+..++.+.+..+.....++....+..|+.+- ....++..|+.+|+...
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 455555555555554444444444444444433 22344555555555543
No 482
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.01 E-value=86 Score=28.72 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 036303 86 ACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTY 122 (605)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 122 (605)
.|+..|..-.+.||+++|+.++++..+.|..--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3446666666666666666666666666654333333
No 483
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.98 E-value=2.7e+02 Score=28.83 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=51.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 57 TLIIAFSEMGHIEEALWVYRKIE-----VLPAIQACNALLNGLIKKGKFD------SVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 57 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
+|+.+|..+|++-++.++++..- ...-...+|..++...+.|.|+ .|.+.+++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999872 2233567888899999999864 4455555554 33466777766
Q ss_pred HHHHH
Q 036303 126 IDCCC 130 (605)
Q Consensus 126 ~~~~~ 130 (605)
+++-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 65543
No 484
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.39 E-value=2.1e+02 Score=22.39 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 526 DVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
++.++|..|...|+-- -+..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 8888999998877655 4888999999999999999999998875
No 485
>PHA02875 ankyrin repeat protein; Provisional
Probab=35.63 E-value=4.4e+02 Score=25.88 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=7.1
Q ss_pred HHHHHhcCCHHHHHH
Q 036303 161 IHGLCNENKMVEAES 175 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~ 175 (605)
+...+..|+.+.+..
T Consensus 72 L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 72 LHDAVEEGDVKAVEE 86 (413)
T ss_pred HHHHHHCCCHHHHHH
Confidence 334445565554433
No 486
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=34.65 E-value=2.3e+02 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=21.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 036303 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIE 151 (605)
Q Consensus 121 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 151 (605)
++..++-.+...|+++.|+.+.+.+++.|.+
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 4445555666777777777777777777643
No 487
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.56 E-value=1.1e+02 Score=18.82 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=13.5
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 131 GQGDVMKALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
+.|-.+++...++.|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444444444444444444444444433
No 488
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=34.00 E-value=2.8e+02 Score=30.73 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=55.6
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 036303 484 CYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENG 557 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 557 (605)
.....+.++..+|+.|.+.|+.+... .|......+.+++.+.+|..++...++..-.|-......+.....+.+
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 35567899999999999988887655 677777788889999999999999987777775554444444433333
No 489
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.36 E-value=2.9e+02 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=18.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 036303 478 AIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
.-+.-+...|+++.++..|.++..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445567778888888888888776
No 490
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=33.17 E-value=6.5e+02 Score=27.15 Aligned_cols=130 Identities=10% Similarity=0.001 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 380 IDAAMGLYTEMVI--------KSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS 451 (605)
Q Consensus 380 ~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (605)
.+....++..... .++..+......++... .|+..+++.+++.+............ .=..+
T Consensus 170 ~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i---------~It~~ 238 (725)
T PRK13341 170 DEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLI---------DITLA 238 (725)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCce---------eccHH
Confidence 4555566665554 23344555555555432 67888888877776532100000000 00111
Q ss_pred HHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 452 NALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (605)
.+.+.+.+....+...+ .++......++.. ++.++++.|+.++.+|++.|..|....-..++-+...-|
T Consensus 239 ~~~e~l~~~~~~ydk~g-d~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 239 IAEESIQQRAVLYDKEG-DAHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HHHHHHHHhhhhcccCC-CCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 22222222111111111 2333333344433 355799999999999999887666544443433443444
No 491
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.91 E-value=3.3e+02 Score=25.23 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh----------ccCChHHH
Q 036303 139 LNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC----------KVADVNRA 208 (605)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----------~~~~~~~a 208 (605)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+|+.+.. |..-|..++..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 57788888888888888888888888888889999999999886 3333666666555 35888888
Q ss_pred HHHHHH
Q 036303 209 LEFYHE 214 (605)
Q Consensus 209 ~~~~~~ 214 (605)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 888765
No 492
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.69 E-value=3.5e+02 Score=23.95 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLF 445 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (605)
....-+..|...-++.-|.....++. .+.--...+--|.+..+..--.++.+-....+++-+...+..++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIi------EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKII------EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhh------hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCC--------CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYC--------SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTM 514 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (605)
..|+..+|+.-++......+.-.. .|++.....++..|... ++++|.+++.++-+.|..|....-+..
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~-~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKR-NIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCHHHHHHHHH
No 493
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.53 E-value=4.1e+02 Score=24.65 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=36.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 036303 314 EGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQC 375 (605)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (605)
.++++.+...++.|.-.++.-+.-.+.+.=.+..++.+|+.+... ..-|..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 345666666677777777766666666666777777777777653 222555555554
No 494
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.27 E-value=1.9e+02 Score=20.72 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHH
Q 036303 105 EFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMI 146 (605)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 146 (605)
++|+-....|+..|+.+|..++..+...=-.+...+++..|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555554444444444444444443
No 495
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.17 E-value=2.1e+02 Score=26.91 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhhh
Q 036303 523 RMLDVMMLLADMIKMGIVPD----AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLG 589 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (605)
-.++...++..+++ -.|+ +..|..+++.....|..+..+.+|+++...+.....-..+.+..+|.
T Consensus 118 p~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34577778888886 3455 67889999999999999999999999999888765555555555555
No 496
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.47 E-value=1.3e+02 Score=26.41 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=32.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSP-NHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+..+.++.+.|.+++.+++. +.| ....|..+...--+.|+++.|.+-+++..+
T Consensus 4 ~~~~~~D~~aaaely~qal~------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hhcccCChHHHHHHHHHHhh------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 34455666666666666654 322 345566666666666777777777777666
No 497
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.45 E-value=2e+02 Score=20.71 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHH
Q 036303 378 GNIDAAMGLYTEMV 391 (605)
Q Consensus 378 ~~~~~a~~~~~~~~ 391 (605)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 498
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.37 E-value=7.2e+02 Score=27.11 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=16.1
Q ss_pred hhHhhcCCchHHHHHHHHHHH
Q 036303 3 YVLANAKLYKNARCLIKDVTE 23 (605)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~l~~ 23 (605)
-..+.+|.|..|-.++++-+.
T Consensus 914 adhvaAGsf~tA~~lL~dqvg 934 (1202)
T KOG0292|consen 914 ADHVAAGSFETAMRLLHDQVG 934 (1202)
T ss_pred hhhhhcCchHHHHHHHHhhhc
Confidence 345678999999988888763
No 499
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.35 E-value=2.3e+02 Score=25.66 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=33.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 517 GLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 517 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
++.+.++++.|....++.+. +.| |+.-..--+-+|.+.|-+.-|+.-++...+.-|+++
T Consensus 190 ~~~~e~~~~~al~~~~r~l~--l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 190 ALLRELQWELALRVAERLLD--LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHhhchHHHHHHHHHHHh--hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 44555666666666666555 223 444445555566666666666666666555555544
No 500
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.15 E-value=4.5e+02 Score=24.62 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=14.9
Q ss_pred hHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 036303 68 IEEALWVYRKI-EVLPAIQACNALLNG 93 (605)
Q Consensus 68 ~~~A~~~~~~~-~~~~~~~~~~~l~~~ 93 (605)
+..++++...+ ...++...|..++..
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~ 82 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSN 82 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 55667777766 566666666555543
Done!