Query 036303
Match_columns 605
No_of_seqs 672 out of 3594
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 19:31:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.3E-42 7.8E-47 356.8 38.8 500 62-579 63-586 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.7E-41 5.9E-46 350.3 40.2 492 50-554 82-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-29 1.1E-33 243.4 46.3 379 163-558 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-28 4.1E-33 239.5 46.9 361 92-462 7-367 (388)
5 2gw1_A Mitochondrial precursor 100.0 3.6E-27 1.2E-31 238.6 36.0 453 84-578 6-484 (514)
6 2gw1_A Mitochondrial precursor 100.0 8.2E-26 2.8E-30 228.6 39.3 462 51-549 5-489 (514)
7 4g26_A Pentatricopeptide repea 100.0 8.1E-28 2.8E-32 236.4 23.3 200 106-305 12-221 (501)
8 4g26_A Pentatricopeptide repea 100.0 1.1E-27 3.8E-32 235.4 23.8 205 137-341 8-222 (501)
9 3fp2_A TPR repeat-containing p 100.0 6.9E-25 2.4E-29 223.1 37.7 435 85-536 26-490 (537)
10 3fp2_A TPR repeat-containing p 99.9 5.6E-24 1.9E-28 216.4 38.7 438 51-509 24-496 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 7.2E-24 2.5E-28 210.4 38.4 356 188-579 25-417 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 1.8E-23 6.1E-28 207.5 38.6 329 102-463 10-358 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 4.3E-21 1.5E-25 184.2 38.3 318 226-579 5-342 (359)
14 2xm6_A Protein corresponding t 99.9 2.6E-19 8.8E-24 178.9 49.7 384 153-572 38-467 (490)
15 2xm6_A Protein corresponding t 99.9 8.1E-19 2.8E-23 175.3 50.2 366 173-575 26-435 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 3.3E-20 1.1E-24 177.9 38.2 329 188-555 2-352 (359)
17 3hym_B Cell division cycle pro 99.9 1.4E-20 4.9E-25 178.2 28.1 294 256-558 19-320 (330)
18 3hym_B Cell division cycle pro 99.9 9E-20 3.1E-24 172.7 33.1 286 291-586 19-313 (330)
19 1xi4_A Clathrin heavy chain; a 99.9 1.6E-17 5.4E-22 173.1 51.4 499 2-567 880-1440(1630)
20 2ooe_A Cleavage stimulation fa 99.9 1.5E-18 5.2E-23 175.2 42.1 432 107-576 2-496 (530)
21 2ooe_A Cleavage stimulation fa 99.9 4.3E-18 1.5E-22 171.9 43.9 423 48-536 9-491 (530)
22 1xi4_A Clathrin heavy chain; a 99.9 2.5E-16 8.5E-21 164.2 53.4 413 48-520 981-1413(1630)
23 1fch_A Peroxisomal targeting s 99.9 1.3E-19 4.5E-24 174.4 26.0 265 295-571 65-358 (368)
24 4g1t_A Interferon-induced prot 99.9 4E-18 1.4E-22 170.0 35.9 391 153-580 50-467 (472)
25 1fch_A Peroxisomal targeting s 99.8 5.3E-19 1.8E-23 170.2 25.2 307 198-535 34-357 (368)
26 4eqf_A PEX5-related protein; a 99.8 6.6E-19 2.2E-23 169.2 25.6 264 295-568 66-352 (365)
27 3cv0_A Peroxisome targeting si 99.8 1.4E-18 4.8E-23 164.2 23.9 269 298-577 25-320 (327)
28 1b89_A Protein (clathrin heavy 99.8 3.3E-18 1.1E-22 159.7 25.4 284 63-386 14-304 (449)
29 4g1t_A Interferon-induced prot 99.8 4.2E-17 1.4E-21 162.6 33.7 393 48-476 47-469 (472)
30 4eqf_A PEX5-related protein; a 99.8 3.9E-18 1.3E-22 163.8 24.9 262 262-533 68-352 (365)
31 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.8E-22 153.6 25.7 246 270-536 10-263 (291)
32 1b89_A Protein (clathrin heavy 99.8 2.5E-18 8.6E-23 160.6 21.4 282 96-420 15-303 (449)
33 3mkr_A Coatomer subunit epsilo 99.8 3.1E-17 1.1E-21 150.7 25.8 256 304-578 9-270 (291)
34 3cv0_A Peroxisome targeting si 99.8 3.3E-17 1.1E-21 154.7 26.5 273 54-353 23-310 (327)
35 3e4b_A ALGK; tetratricopeptide 99.8 7.7E-17 2.6E-21 158.2 24.3 347 57-429 8-388 (452)
36 2pl2_A Hypothetical conserved 99.8 1.2E-16 4.2E-21 140.2 21.6 199 361-570 2-212 (217)
37 3e4b_A ALGK; tetratricopeptide 99.7 4.7E-16 1.6E-20 152.7 26.5 223 331-574 178-423 (452)
38 3u4t_A TPR repeat-containing p 99.7 4.4E-16 1.5E-20 142.7 23.5 240 331-579 5-257 (272)
39 3uq3_A Heat shock protein STI1 99.7 3.8E-16 1.3E-20 141.8 22.9 227 330-574 6-238 (258)
40 3uq3_A Heat shock protein STI1 99.7 1E-15 3.6E-20 138.9 23.4 222 296-536 7-235 (258)
41 1ouv_A Conserved hypothetical 99.7 3.3E-14 1.1E-18 130.0 33.3 227 328-576 5-255 (273)
42 2pl2_A Hypothetical conserved 99.7 9.5E-16 3.2E-20 134.5 19.4 196 50-250 3-211 (217)
43 2h6f_A Protein farnesyltransfe 99.7 2.4E-15 8.1E-20 142.7 22.8 240 329-581 97-357 (382)
44 3u4t_A TPR repeat-containing p 99.7 8.5E-15 2.9E-19 134.0 24.5 243 302-554 11-266 (272)
45 2ho1_A Type 4 fimbrial biogene 99.7 1.7E-14 5.8E-19 130.3 25.7 207 364-578 37-244 (252)
46 4e6h_A MRNA 3'-END-processing 99.7 1.8E-12 6.1E-17 131.3 42.7 148 69-217 49-222 (679)
47 4e6h_A MRNA 3'-END-processing 99.7 1.5E-12 5E-17 131.9 41.4 456 31-518 48-584 (679)
48 2q7f_A YRRB protein; TPR, prot 99.7 4.2E-15 1.4E-19 133.5 20.3 208 363-579 22-229 (243)
49 2vq2_A PILW, putative fimbrial 99.7 3.5E-14 1.2E-18 125.7 25.7 209 363-578 7-217 (225)
50 2h6f_A Protein farnesyltransfe 99.7 2.4E-14 8.1E-19 135.8 25.8 248 295-556 98-366 (382)
51 1ouv_A Conserved hypothetical 99.7 7.7E-14 2.6E-18 127.6 28.6 224 50-288 4-251 (273)
52 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.5E-15 2.6E-19 134.7 20.8 245 306-566 17-269 (275)
53 3vtx_A MAMA; tetratricopeptide 99.7 1.1E-14 3.7E-19 124.4 19.7 169 398-576 4-174 (184)
54 4a1s_A PINS, partner of inscut 99.6 4.8E-15 1.6E-19 144.8 18.7 210 366-575 128-375 (411)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-14 6.1E-19 132.1 20.6 249 272-531 18-269 (275)
56 3sf4_A G-protein-signaling mod 99.6 9.8E-15 3.4E-19 142.3 19.0 231 331-561 89-365 (406)
57 3spa_A Mtrpol, DNA-directed RN 99.6 6.9E-16 2.4E-20 156.0 10.9 150 84-238 127-286 (1134)
58 2ho1_A Type 4 fimbrial biogene 99.6 2.3E-13 8E-18 122.8 26.5 164 366-536 73-237 (252)
59 2q7f_A YRRB protein; TPR, prot 99.6 2.3E-14 7.8E-19 128.7 19.7 213 329-552 23-236 (243)
60 3sf4_A G-protein-signaling mod 99.6 1.6E-14 5.5E-19 140.8 20.2 283 292-575 7-339 (406)
61 3ro2_A PINS homolog, G-protein 99.6 1E-14 3.5E-19 138.1 18.2 210 366-575 85-335 (338)
62 2ond_A Cleavage stimulation fa 99.6 4.1E-13 1.4E-17 124.9 28.2 225 346-579 33-277 (308)
63 2vq2_A PILW, putative fimbrial 99.6 4.2E-13 1.4E-17 118.7 26.4 199 331-536 10-210 (225)
64 3spa_A Mtrpol, DNA-directed RN 99.6 6E-16 2E-20 156.5 8.6 120 118-237 126-249 (1134)
65 3ulq_A Response regulator aspa 99.6 6.5E-14 2.2E-18 135.1 20.9 238 335-575 109-371 (383)
66 4a1s_A PINS, partner of inscut 99.6 4.7E-14 1.6E-18 137.7 17.9 271 265-536 54-371 (411)
67 3ulq_A Response regulator aspa 99.6 3.5E-13 1.2E-17 130.0 22.1 234 300-536 109-367 (383)
68 3nf1_A KLC 1, kinesin light ch 99.6 5.9E-14 2E-18 131.2 15.9 244 330-575 28-310 (311)
69 4abn_A Tetratricopeptide repea 99.6 1.4E-13 4.7E-18 136.0 19.0 211 345-568 84-317 (474)
70 3vtx_A MAMA; tetratricopeptide 99.6 1.1E-12 3.8E-17 111.8 22.1 165 363-536 4-169 (184)
71 2ond_A Cleavage stimulation fa 99.5 1.1E-11 3.9E-16 115.1 29.2 217 311-536 33-269 (308)
72 3ro2_A PINS homolog, G-protein 99.5 5E-13 1.7E-17 126.4 20.2 270 267-537 13-332 (338)
73 3q15_A PSP28, response regulat 99.5 1.7E-12 5.8E-17 124.8 23.9 237 334-573 106-366 (378)
74 4abn_A Tetratricopeptide repea 99.5 8.4E-13 2.9E-17 130.4 20.1 211 310-532 84-316 (474)
75 1hz4_A MALT regulatory protein 99.5 2E-11 6.7E-16 117.3 29.0 91 266-356 21-120 (373)
76 4i17_A Hypothetical protein; T 99.5 2.1E-12 7.2E-17 114.4 19.9 201 362-578 5-215 (228)
77 4gyw_A UDP-N-acetylglucosamine 99.5 7.1E-13 2.4E-17 135.9 19.0 168 398-575 8-177 (723)
78 3as5_A MAMA; tetratricopeptide 99.5 2E-12 7E-17 110.3 18.3 172 400-579 9-180 (186)
79 3q15_A PSP28, response regulat 99.5 8.2E-12 2.8E-16 120.0 24.0 233 300-536 107-364 (378)
80 4i17_A Hypothetical protein; T 99.5 1.4E-11 4.9E-16 109.0 22.4 208 327-552 5-223 (228)
81 3nf1_A KLC 1, kinesin light ch 99.5 1.3E-12 4.5E-17 122.0 16.1 204 331-536 71-306 (311)
82 1hz4_A MALT regulatory protein 99.4 1.6E-10 5.5E-15 110.9 30.5 279 227-536 17-321 (373)
83 4gyw_A UDP-N-acetylglucosamine 99.4 6.4E-12 2.2E-16 128.9 19.0 167 48-217 5-173 (723)
84 3as5_A MAMA; tetratricopeptide 99.4 3.4E-11 1.2E-15 102.6 19.8 165 51-218 7-173 (186)
85 3edt_B KLC 2, kinesin light ch 99.4 1.1E-11 3.9E-16 113.7 16.9 233 340-573 12-282 (283)
86 1qqe_A Vesicular transport pro 99.3 2.4E-11 8.1E-16 111.9 16.2 202 373-576 46-273 (292)
87 3qky_A Outer membrane assembly 99.3 6.4E-11 2.2E-15 107.2 18.9 176 398-578 14-230 (261)
88 3mv2_B Coatomer subunit epsilo 99.3 8.2E-10 2.8E-14 99.0 24.7 185 383-578 85-288 (310)
89 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.7E-10 5.8E-15 101.6 20.0 193 364-582 4-223 (225)
90 3urz_A Uncharacterized protein 99.3 5.5E-11 1.9E-15 103.2 16.0 129 439-576 59-190 (208)
91 1qqe_A Vesicular transport pro 99.3 3.5E-11 1.2E-15 110.7 15.5 185 379-580 32-236 (292)
92 3edt_B KLC 2, kinesin light ch 99.3 7.9E-11 2.7E-15 108.0 15.9 230 305-536 12-280 (283)
93 4ga2_A E3 SUMO-protein ligase 99.3 1.2E-11 4.1E-16 100.8 8.5 131 440-579 3-136 (150)
94 3qky_A Outer membrane assembly 99.3 3.3E-10 1.1E-14 102.5 18.4 83 477-563 152-252 (261)
95 3rjv_A Putative SEL1 repeat pr 99.2 1.5E-09 5.2E-14 94.3 21.6 174 383-574 5-199 (212)
96 3urz_A Uncharacterized protein 99.2 3.3E-10 1.1E-14 98.2 17.1 138 404-551 59-198 (208)
97 2fo7_A Synthetic consensus TPR 99.2 6.4E-10 2.2E-14 88.8 17.4 133 436-575 3-135 (136)
98 3mv2_B Coatomer subunit epsilo 99.2 6.9E-09 2.4E-13 93.0 25.1 244 269-542 23-285 (310)
99 2uy1_A Cleavage stimulation fa 99.2 4.2E-08 1.4E-12 96.6 32.8 45 313-358 198-242 (493)
100 4ga2_A E3 SUMO-protein ligase 99.2 4.5E-11 1.5E-15 97.4 9.2 144 405-558 3-149 (150)
101 3dra_A Protein farnesyltransfe 99.2 6.2E-09 2.1E-13 94.5 23.9 222 344-575 48-291 (306)
102 2ifu_A Gamma-SNAP; membrane fu 99.2 3.3E-10 1.1E-14 105.0 15.5 229 307-564 4-253 (307)
103 2pzi_A Probable serine/threoni 99.2 3.1E-10 1E-14 117.3 16.2 172 375-558 402-583 (681)
104 2uy1_A Cleavage stimulation fa 99.2 3.7E-08 1.3E-12 97.0 30.1 378 96-571 6-412 (493)
105 3qou_A Protein YBBN; thioredox 99.2 1.1E-09 3.6E-14 100.3 17.6 167 396-571 114-283 (287)
106 2vsy_A XCC0866; transferase, g 99.2 7.2E-10 2.5E-14 112.7 17.6 153 377-538 2-158 (568)
107 2r5s_A Uncharacterized protein 99.2 6.8E-10 2.3E-14 93.4 14.3 162 53-217 7-172 (176)
108 2pzi_A Probable serine/threoni 99.1 1.3E-10 4.4E-15 120.1 11.6 167 410-587 402-578 (681)
109 2r5s_A Uncharacterized protein 99.1 5E-10 1.7E-14 94.2 13.3 162 401-571 8-172 (176)
110 3rjv_A Putative SEL1 repeat pr 99.1 9.8E-09 3.3E-13 89.1 21.7 175 347-538 4-198 (212)
111 3gyz_A Chaperone protein IPGC; 99.1 3.5E-10 1.2E-14 91.4 10.4 104 470-577 33-138 (151)
112 2fo7_A Synthetic consensus TPR 99.1 5.6E-09 1.9E-13 83.2 16.7 127 403-536 5-131 (136)
113 4gco_A Protein STI-1; structur 99.1 1.3E-09 4.5E-14 85.4 11.9 106 470-579 9-117 (126)
114 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.4E-08 4.8E-13 89.2 19.7 192 328-538 3-214 (225)
115 2ifu_A Gamma-SNAP; membrane fu 99.1 1.5E-09 5E-14 100.7 13.4 228 271-529 3-253 (307)
116 2qfc_A PLCR protein; TPR, HTH, 99.1 3.8E-08 1.3E-12 90.5 22.8 172 401-572 77-266 (293)
117 3dra_A Protein farnesyltransfe 99.0 1E-07 3.6E-12 86.5 24.6 226 58-287 38-286 (306)
118 3qou_A Protein YBBN; thioredox 99.0 3.5E-09 1.2E-13 96.9 14.6 163 84-250 117-281 (287)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1E-08 3.6E-13 89.3 16.4 129 439-576 11-154 (213)
120 2vgx_A Chaperone SYCD; alterna 99.0 1.4E-09 4.6E-14 88.2 9.3 104 471-578 19-124 (148)
121 4gco_A Protein STI-1; structur 99.0 1.1E-08 3.8E-13 80.1 13.6 110 434-552 13-124 (126)
122 3u3w_A Transcriptional activat 99.0 1.7E-07 5.9E-12 86.0 23.1 169 405-573 81-267 (293)
123 2vsy_A XCC0866; transferase, g 99.0 1.5E-08 5.1E-13 103.0 17.4 150 66-218 3-157 (568)
124 4f3v_A ESX-1 secretion system 99.0 3.9E-08 1.3E-12 87.0 17.4 133 436-575 104-240 (282)
125 2c2l_A CHIP, carboxy terminus 99.0 2.6E-08 8.9E-13 90.7 17.0 200 363-577 3-204 (281)
126 3q7a_A Farnesyltransferase alp 98.9 2.1E-07 7.1E-12 85.3 22.6 222 343-574 68-334 (349)
127 2e2e_A Formate-dependent nitri 98.9 7.5E-09 2.6E-13 87.1 11.4 124 445-577 21-149 (177)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.7E-07 5.9E-12 81.4 19.8 131 53-185 7-152 (213)
129 3dss_A Geranylgeranyl transfer 98.9 9.1E-07 3.1E-11 80.7 24.6 218 347-576 48-308 (331)
130 2xcb_A PCRH, regulatory protei 98.9 6.5E-09 2.2E-13 83.7 9.5 103 472-578 17-121 (142)
131 3gw4_A Uncharacterized protein 98.9 3.5E-08 1.2E-12 85.1 14.8 163 411-574 4-178 (203)
132 2qfc_A PLCR protein; TPR, HTH, 98.9 2.5E-07 8.6E-12 84.9 21.4 171 366-536 77-265 (293)
133 3u3w_A Transcriptional activat 98.9 5.3E-07 1.8E-11 82.8 23.4 91 336-426 82-182 (293)
134 1a17_A Serine/threonine protei 98.9 7.8E-08 2.7E-12 79.8 15.0 129 435-572 14-146 (166)
135 3gyz_A Chaperone protein IPGC; 98.8 1.6E-08 5.4E-13 81.7 10.2 94 436-536 38-132 (151)
136 3sz7_A HSC70 cochaperone (SGT) 98.8 1.4E-08 4.8E-13 84.1 9.9 106 470-579 8-115 (164)
137 3q49_B STIP1 homology and U bo 98.8 1.7E-08 5.8E-13 80.7 10.0 119 470-592 6-126 (137)
138 3q7a_A Farnesyltransferase alp 98.8 1.6E-06 5.4E-11 79.5 23.5 176 60-239 62-257 (349)
139 4gcn_A Protein STI-1; structur 98.8 3.6E-08 1.2E-12 77.3 10.9 101 473-575 8-115 (127)
140 1hxi_A PEX5, peroxisome target 98.8 2.6E-08 9E-13 77.3 9.8 99 475-577 19-119 (121)
141 3gw4_A Uncharacterized protein 98.8 2.5E-07 8.4E-12 79.7 17.1 160 376-536 4-175 (203)
142 3upv_A Heat shock protein STI1 98.8 4.3E-08 1.5E-12 76.9 11.2 98 473-574 4-103 (126)
143 2lni_A Stress-induced-phosphop 98.8 1.1E-07 3.8E-12 75.3 13.7 115 434-557 16-132 (133)
144 4f3v_A ESX-1 secretion system 98.8 4.1E-07 1.4E-11 80.5 18.0 197 341-549 18-247 (282)
145 4gcn_A Protein STI-1; structur 98.8 7.8E-08 2.7E-12 75.4 12.1 104 436-548 10-121 (127)
146 2vgx_A Chaperone SYCD; alterna 98.8 3.5E-08 1.2E-12 79.8 10.3 97 433-536 20-117 (148)
147 2c2l_A CHIP, carboxy terminus 98.8 1.2E-07 4.2E-12 86.2 14.9 195 83-287 3-198 (281)
148 2kck_A TPR repeat; tetratricop 98.8 7.2E-08 2.5E-12 73.7 11.5 105 472-578 5-112 (112)
149 2vyi_A SGTA protein; chaperone 98.8 1.1E-07 3.9E-12 74.9 12.8 117 434-559 12-130 (131)
150 2hr2_A Hypothetical protein; a 98.8 6.5E-08 2.2E-12 76.9 10.9 105 475-581 13-140 (159)
151 1a17_A Serine/threonine protei 98.8 2.8E-07 9.7E-12 76.3 15.6 128 400-535 14-144 (166)
152 1p5q_A FKBP52, FK506-binding p 98.8 1.2E-07 4E-12 88.8 14.6 135 433-571 146-293 (336)
153 3dss_A Geranylgeranyl transfer 98.7 1.4E-05 4.7E-10 73.0 26.4 195 345-551 90-317 (331)
154 2lni_A Stress-induced-phosphop 98.7 2.5E-07 8.6E-12 73.2 13.5 119 48-168 12-132 (133)
155 1na0_A Designed protein CTPR3; 98.7 3.9E-07 1.3E-11 71.1 14.5 94 437-536 12-105 (125)
156 1elw_A TPR1-domain of HOP; HOP 98.7 3E-07 1E-11 70.9 13.3 103 472-577 3-106 (118)
157 2fbn_A 70 kDa peptidylprolyl i 98.7 2.3E-08 7.8E-13 85.9 7.2 135 434-572 38-186 (198)
158 2e2e_A Formate-dependent nitri 98.7 1.6E-07 5.4E-12 78.9 12.2 118 377-501 23-143 (177)
159 2dba_A Smooth muscle cell asso 98.7 3.5E-07 1.2E-11 74.0 13.8 105 470-578 25-134 (148)
160 3upv_A Heat shock protein STI1 98.7 5.6E-07 1.9E-11 70.5 13.8 95 435-536 5-100 (126)
161 1na0_A Designed protein CTPR3; 98.7 8.7E-07 3E-11 69.0 14.8 113 399-519 9-122 (125)
162 2vyi_A SGTA protein; chaperone 98.7 5.4E-07 1.9E-11 70.9 13.6 118 399-524 12-130 (131)
163 3rkv_A Putative peptidylprolyl 98.7 5.9E-08 2E-12 80.1 8.1 103 473-577 11-131 (162)
164 1p5q_A FKBP52, FK506-binding p 98.6 5.3E-07 1.8E-11 84.3 15.0 128 401-535 149-292 (336)
165 2xev_A YBGF; tetratricopeptide 98.6 4.3E-07 1.5E-11 71.5 11.9 99 476-578 5-111 (129)
166 1elr_A TPR2A-domain of HOP; HO 98.6 3E-07 1E-11 72.5 10.6 57 439-500 9-65 (131)
167 1elw_A TPR1-domain of HOP; HOP 98.6 1.5E-06 5E-11 66.9 14.3 110 434-552 4-115 (118)
168 4b4t_Q 26S proteasome regulato 98.6 3.8E-06 1.3E-10 82.1 20.2 171 402-572 58-245 (434)
169 2fbn_A 70 kDa peptidylprolyl i 98.6 1.2E-07 4.2E-12 81.2 8.3 148 59-209 11-176 (198)
170 2xcb_A PCRH, regulatory protei 98.6 6.1E-07 2.1E-11 72.0 11.8 90 439-535 23-113 (142)
171 3ro3_A PINS homolog, G-protein 98.6 6.5E-07 2.2E-11 73.7 12.2 140 435-574 10-160 (164)
172 3q49_B STIP1 homology and U bo 98.6 7.8E-07 2.7E-11 70.8 12.0 98 432-536 7-105 (137)
173 3sz7_A HSC70 cochaperone (SGT) 98.5 1.3E-06 4.5E-11 72.1 13.1 97 433-536 10-107 (164)
174 2if4_A ATFKBP42; FKBP-like, al 98.5 1.8E-07 6.2E-12 87.6 8.5 101 475-579 232-335 (338)
175 1wao_1 Serine/threonine protei 98.5 2.2E-07 7.5E-12 91.4 9.0 133 440-581 12-159 (477)
176 2dba_A Smooth muscle cell asso 98.5 3.4E-06 1.2E-10 68.0 14.6 113 432-554 26-144 (148)
177 1elr_A TPR2A-domain of HOP; HO 98.5 1.5E-06 5.1E-11 68.4 12.2 113 400-517 5-121 (131)
178 2kck_A TPR repeat; tetratricop 98.5 1.3E-06 4.4E-11 66.5 11.3 97 51-148 5-106 (112)
179 3k9i_A BH0479 protein; putativ 98.5 1.7E-07 5.7E-12 72.3 5.9 90 486-577 3-95 (117)
180 1hxi_A PEX5, peroxisome target 98.5 1.5E-06 5.1E-11 67.3 11.1 88 441-535 24-112 (121)
181 3rkv_A Putative peptidylprolyl 98.4 1.9E-06 6.6E-11 70.9 11.8 78 472-553 62-142 (162)
182 4b4t_Q 26S proteasome regulato 98.4 1.4E-05 4.9E-10 78.0 20.1 201 301-501 11-244 (434)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.6E-06 5.3E-11 85.0 13.0 133 434-570 268-413 (457)
184 1ihg_A Cyclophilin 40; ppiase 98.4 2.6E-06 8.8E-11 80.6 13.5 90 471-564 271-362 (370)
185 2hr2_A Hypothetical protein; a 98.4 1.6E-06 5.3E-11 69.0 9.2 99 436-536 13-130 (159)
186 3ro3_A PINS homolog, G-protein 98.4 2.8E-06 9.5E-11 69.8 11.4 136 401-536 11-157 (164)
187 1dce_A Protein (RAB geranylger 98.4 7.3E-06 2.5E-10 82.0 16.3 160 414-583 44-232 (567)
188 2xev_A YBGF; tetratricopeptide 98.3 1.2E-05 4.1E-10 63.0 13.5 60 475-536 41-104 (129)
189 1dce_A Protein (RAB geranylger 98.3 2.7E-05 9.2E-10 77.9 18.9 187 379-576 44-271 (567)
190 3k9i_A BH0479 protein; putativ 98.3 2.3E-06 7.9E-11 65.8 7.8 86 447-536 3-89 (117)
191 1wao_1 Serine/threonine protei 98.3 4.9E-06 1.7E-10 81.8 12.0 119 372-497 14-134 (477)
192 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.5E-05 5.3E-10 77.9 14.8 128 401-535 270-413 (457)
193 2if4_A ATFKBP42; FKBP-like, al 98.2 2.7E-06 9.1E-11 79.6 8.7 70 510-581 232-302 (338)
194 1zu2_A Mitochondrial import re 98.2 1.4E-06 4.8E-11 69.1 5.2 89 485-577 14-125 (158)
195 2l6j_A TPR repeat-containing p 98.2 1.5E-06 5.3E-11 66.0 5.3 93 472-568 3-103 (111)
196 1ihg_A Cyclophilin 40; ppiase 98.2 1.5E-05 5.1E-10 75.4 12.6 90 433-529 272-362 (370)
197 1klx_A Cysteine rich protein B 98.2 7.7E-05 2.6E-09 59.0 14.6 110 449-573 10-127 (138)
198 3n71_A Histone lysine methyltr 98.2 2.2E-05 7.5E-10 76.5 13.4 135 443-577 318-469 (490)
199 1zu2_A Mitochondrial import re 98.1 1.1E-05 3.8E-10 64.0 7.5 99 411-517 14-133 (158)
200 2kat_A Uncharacterized protein 98.0 1.2E-05 4.3E-10 61.4 7.7 83 491-577 3-87 (115)
201 1klx_A Cysteine rich protein B 98.0 0.00015 5.2E-09 57.3 13.9 111 413-538 9-127 (138)
202 3n71_A Histone lysine methyltr 98.0 2E-05 7E-10 76.8 10.1 128 5-147 319-463 (490)
203 1na3_A Designed protein CTPR2; 97.9 8E-05 2.7E-09 53.7 9.8 82 472-557 8-91 (91)
204 2l6j_A TPR repeat-containing p 97.9 4.3E-05 1.5E-09 57.8 8.5 90 433-529 3-99 (111)
205 3bee_A Putative YFRE protein; 97.9 8.9E-05 3E-09 53.5 9.4 72 505-579 3-78 (93)
206 2kat_A Uncharacterized protein 97.9 3.4E-05 1.2E-09 58.9 7.6 78 452-536 3-81 (115)
207 3ma5_A Tetratricopeptide repea 97.9 2.6E-05 8.7E-10 57.7 6.4 64 471-536 5-69 (100)
208 1na3_A Designed protein CTPR2; 97.8 0.00011 3.9E-09 52.9 9.1 61 53-113 10-72 (91)
209 3lvg_A Clathrin heavy chain 1; 97.8 6.9E-08 2.4E-12 89.3 -10.8 426 50-530 52-534 (624)
210 3ly7_A Transcriptional activat 97.7 0.00038 1.3E-08 63.7 12.6 70 505-576 274-343 (372)
211 3ma5_A Tetratricopeptide repea 97.7 9.8E-05 3.4E-09 54.5 7.0 70 507-578 6-76 (100)
212 1pc2_A Mitochondria fission pr 97.7 0.00025 8.4E-09 55.6 9.1 89 489-579 14-107 (152)
213 3qww_A SET and MYND domain-con 97.6 0.00014 4.9E-09 69.6 8.4 87 486-572 311-411 (433)
214 2kc7_A BFR218_protein; tetratr 97.6 0.00011 3.9E-09 54.0 6.2 88 479-578 6-96 (99)
215 3ly7_A Transcriptional activat 97.6 0.0022 7.5E-08 58.7 15.1 75 470-548 274-348 (372)
216 2kc7_A BFR218_protein; tetratr 97.5 0.00035 1.2E-08 51.3 7.8 66 513-580 5-72 (99)
217 3u64_A Protein TP_0956; tetrat 97.4 0.014 4.9E-07 51.1 17.9 105 471-579 152-276 (301)
218 3qwp_A SET and MYND domain-con 97.4 0.00048 1.6E-08 66.1 9.6 93 480-572 294-400 (429)
219 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0014 4.8E-08 48.5 9.4 68 511-578 8-81 (104)
220 3qww_A SET and MYND domain-con 97.2 0.0011 3.6E-08 63.6 8.6 60 53-112 341-410 (433)
221 3qwp_A SET and MYND domain-con 97.1 0.0052 1.8E-07 58.9 12.9 96 441-536 294-399 (429)
222 1nzn_A CGI-135 protein, fissio 97.1 0.0026 9E-08 47.8 8.4 89 489-579 17-110 (126)
223 3bee_A Putative YFRE protein; 97.1 0.0032 1.1E-07 45.2 8.6 64 50-113 4-72 (93)
224 1pc2_A Mitochondria fission pr 97.0 0.013 4.4E-07 45.9 11.7 84 417-508 16-104 (152)
225 4h7y_A Dual specificity protei 97.0 0.0027 9.1E-08 48.8 7.5 105 471-577 11-128 (161)
226 4h7y_A Dual specificity protei 96.7 0.018 6.2E-07 44.3 10.1 106 80-187 9-127 (161)
227 2v5f_A Prolyl 4-hydroxylase su 96.7 0.02 6.8E-07 42.1 10.3 74 433-508 4-79 (104)
228 1y8m_A FIS1; mitochondria, unk 96.6 0.065 2.2E-06 41.0 12.2 75 505-579 36-113 (144)
229 3u64_A Protein TP_0956; tetrat 96.5 0.38 1.3E-05 42.3 19.5 85 135-221 179-272 (301)
230 3o48_A Mitochondria fission 1 96.5 0.034 1.2E-06 41.9 10.1 77 503-579 35-114 (134)
231 3lvg_A Clathrin heavy chain 1; 96.4 3.7E-05 1.3E-09 71.6 -7.4 265 84-385 54-325 (624)
232 3mkq_A Coatomer beta'-subunit; 96.2 0.2 6.8E-06 53.0 18.7 28 433-460 680-707 (814)
233 3mkq_B Coatomer subunit alpha; 96.2 0.14 4.8E-06 41.2 12.7 102 60-179 13-114 (177)
234 3mkq_A Coatomer beta'-subunit; 96.1 0.24 8.1E-06 52.4 18.3 45 165-215 663-707 (814)
235 4ady_A RPN2, 26S proteasome re 95.8 2.3 7.8E-05 44.5 41.1 269 235-518 385-671 (963)
236 3mkq_B Coatomer subunit alpha; 95.7 0.66 2.3E-05 37.3 15.7 100 164-284 15-114 (177)
237 1nzn_A CGI-135 protein, fissio 95.5 0.31 1.1E-05 36.6 11.3 23 479-501 80-102 (126)
238 4ady_A RPN2, 26S proteasome re 95.3 3.4 0.00012 43.2 39.3 221 304-536 384-622 (963)
239 1wy6_A Hypothetical protein ST 95.1 0.76 2.6E-05 34.7 14.2 59 160-219 97-155 (172)
240 4b4t_P 26S proteasome regulato 95.0 2.2 7.5E-05 41.0 19.0 99 403-501 141-246 (445)
241 3ffl_A Anaphase-promoting comp 94.1 0.39 1.3E-05 38.0 9.1 133 2-163 27-164 (167)
242 1wy6_A Hypothetical protein ST 93.9 1.5 5.3E-05 33.1 17.8 62 477-539 95-156 (172)
243 2ff4_A Probable regulatory pro 93.8 2 6.8E-05 40.4 15.4 78 476-555 174-257 (388)
244 4fhn_B Nucleoporin NUP120; pro 93.5 3 0.0001 45.8 18.3 88 120-209 900-991 (1139)
245 3o48_A Mitochondria fission 1 93.4 0.77 2.7E-05 34.6 9.3 69 470-542 37-110 (134)
246 4gns_B Protein CSD3, chitin bi 93.4 0.6 2.1E-05 47.7 11.6 52 481-534 345-397 (754)
247 1y8m_A FIS1; mitochondria, unk 92.6 2.5 8.7E-05 32.3 11.2 68 81-148 36-106 (144)
248 3txn_A 26S proteasome regulato 92.5 3.6 0.00012 38.4 14.7 94 478-571 104-209 (394)
249 4b4t_P 26S proteasome regulato 92.4 7.9 0.00027 37.1 22.7 188 343-535 30-245 (445)
250 3ffl_A Anaphase-promoting comp 91.5 1.1 3.9E-05 35.3 8.5 29 541-569 120-148 (167)
251 1zbp_A Hypothetical protein VP 91.1 1 3.5E-05 38.9 8.6 119 443-578 6-135 (273)
252 4gns_B Protein CSD3, chitin bi 91.0 0.89 3.1E-05 46.5 9.6 127 88-215 252-397 (754)
253 4fhn_B Nucleoporin NUP120; pro 90.8 3.7 0.00013 45.1 14.9 134 436-573 901-1051(1139)
254 3txn_A 26S proteasome regulato 90.7 11 0.00037 35.2 23.4 166 260-426 20-208 (394)
255 2ff4_A Probable regulatory pro 90.1 2.2 7.4E-05 40.2 10.9 70 437-511 174-248 (388)
256 1v54_E Cytochrome C oxidase po 87.8 2.7 9.3E-05 29.7 7.0 61 488-549 25-85 (109)
257 3esl_A Checkpoint serine/threo 87.1 11 0.00036 31.0 11.4 75 470-544 74-151 (202)
258 2wpv_A GET4, UPF0363 protein Y 86.8 17 0.00058 32.5 17.4 113 54-178 35-158 (312)
259 3esl_A Checkpoint serine/threo 84.8 9.6 0.00033 31.3 10.0 57 521-577 92-149 (202)
260 3lpz_A GET4 (YOR164C homolog); 84.4 23 0.00079 32.0 21.0 112 54-177 37-159 (336)
261 1v54_E Cytochrome C oxidase po 84.3 9 0.00031 27.2 9.8 54 523-576 25-78 (109)
262 3lpz_A GET4 (YOR164C homolog); 84.3 23 0.0008 31.9 18.8 171 366-571 37-215 (336)
263 1qsa_A Protein (soluble lytic 83.2 40 0.0014 33.8 35.3 51 515-568 388-438 (618)
264 1zbp_A Hypothetical protein VP 83.1 3.1 0.00011 36.0 6.8 58 482-542 6-63 (273)
265 2y69_E Cytochrome C oxidase su 82.4 5.8 0.0002 29.9 7.0 48 488-535 68-115 (152)
266 4a1g_A Mitotic checkpoint seri 80.3 7.1 0.00024 30.4 7.4 47 527-573 84-131 (152)
267 4b4t_R RPN7, 26S proteasome re 79.9 20 0.00067 34.1 12.1 97 86-182 133-236 (429)
268 4a1g_A Mitotic checkpoint seri 77.6 23 0.00079 27.6 11.5 73 470-545 65-138 (152)
269 4b4t_R RPN7, 26S proteasome re 77.1 17 0.00059 34.6 10.8 61 366-426 133-195 (429)
270 2wpv_A GET4, UPF0363 protein Y 77.0 41 0.0014 30.1 20.9 126 427-572 85-217 (312)
271 2y69_E Cytochrome C oxidase su 75.5 24 0.00082 26.7 10.5 51 526-576 71-121 (152)
272 3mv2_A Coatomer subunit alpha; 75.1 28 0.00097 31.0 10.5 20 444-463 124-143 (325)
273 2wvi_A Mitotic checkpoint seri 74.1 31 0.0011 27.3 11.0 72 470-544 60-132 (164)
274 2wvi_A Mitotic checkpoint seri 71.2 25 0.00084 27.8 8.3 53 101-153 77-130 (164)
275 4b4t_S RPN3, 26S proteasome re 70.4 50 0.0017 31.9 11.8 19 4-22 145-163 (523)
276 1bpo_A Protein (clathrin); cla 69.8 77 0.0026 30.1 12.5 111 65-177 342-452 (494)
277 2p58_C Putative type III secre 69.5 27 0.00092 24.7 7.5 49 164-218 50-98 (116)
278 2uwj_G Type III export protein 67.5 25 0.00087 24.8 6.6 49 164-218 49-97 (115)
279 2p58_C Putative type III secre 67.3 30 0.001 24.5 7.1 75 488-571 22-97 (116)
280 3kae_A CDC27, possible protein 66.8 46 0.0016 26.4 9.9 33 545-577 116-148 (242)
281 3ltm_A Alpha-REP4; protein eng 66.8 53 0.0018 27.1 19.3 92 432-536 93-184 (211)
282 2uwj_G Type III export protein 64.6 29 0.001 24.5 6.5 76 488-572 21-97 (115)
283 4aez_C MAD3, mitotic spindle c 62.7 33 0.0011 28.7 7.8 52 101-152 131-183 (223)
284 4aez_C MAD3, mitotic spindle c 57.9 83 0.0028 26.3 9.9 72 469-543 113-185 (223)
285 3mkr_B Coatomer subunit alpha; 56.9 44 0.0015 29.8 8.1 20 444-463 112-131 (320)
286 3eiq_C Programmed cell death p 50.4 1.1E+02 0.0039 27.9 10.0 64 263-327 221-286 (358)
287 1qsa_A Protein (soluble lytic 49.3 2.2E+02 0.0074 28.6 41.4 99 66-170 53-152 (618)
288 4gq2_M Nucleoporin NUP120; bet 48.3 1.5E+02 0.0052 31.7 12.2 131 57-202 815-949 (950)
289 4gq2_M Nucleoporin NUP120; bet 47.5 1.4E+02 0.0049 31.9 11.9 112 440-573 816-927 (950)
290 4b4t_S RPN3, 26S proteasome re 45.4 56 0.0019 31.6 7.4 69 510-578 233-305 (523)
291 2d2s_A Exocyst complex compone 43.1 1.5E+02 0.0053 25.1 9.3 88 91-181 25-118 (235)
292 3bge_A Predicted ATPase; struc 39.5 1.5E+02 0.0053 24.1 8.9 39 305-343 18-56 (201)
293 2d2s_A Exocyst complex compone 39.3 1.8E+02 0.006 24.7 9.2 30 431-460 88-117 (235)
294 2r9g_A AAA ATPase, central reg 39.3 1.6E+02 0.0054 24.1 9.7 37 306-343 26-62 (204)
295 1wdy_A 2-5A-dependent ribonucl 36.5 2E+02 0.0069 24.6 10.9 7 95-101 13-19 (285)
296 3ctd_A Putative ATPase, AAA fa 36.3 1.8E+02 0.0062 24.0 9.0 39 305-343 46-84 (213)
297 3ltj_A Alpharep-4; protein eng 36.1 1.7E+02 0.0058 23.6 19.9 92 432-536 88-179 (201)
298 2ijq_A Hypothetical protein; s 35.0 1.6E+02 0.0056 23.1 7.7 52 96-147 44-103 (161)
299 1oyz_A Hypothetical protein YI 34.9 2.2E+02 0.0075 24.5 22.9 122 432-571 140-262 (280)
300 3bu8_A Telomeric repeat-bindin 34.1 1.7E+02 0.0057 24.3 7.3 49 100-148 88-143 (235)
301 3eu9_A Huntingtin-interacting 33.3 1.7E+02 0.006 24.1 8.5 7 164-170 49-55 (240)
302 3mv2_A Coatomer subunit alpha; 32.5 2.7E+02 0.0093 24.9 11.4 108 3-115 122-238 (325)
303 3pvs_A Replication-associated 31.0 3.5E+02 0.012 25.7 14.0 55 236-290 267-326 (447)
304 2crb_A Nuclear receptor bindin 31.0 85 0.0029 21.7 4.4 23 546-568 18-40 (97)
305 3ltm_A Alpha-REP4; protein eng 31.0 2.1E+02 0.0073 23.2 17.9 48 118-169 63-110 (211)
306 3u84_A Menin; MLL, JUND, ledgf 30.9 3.3E+02 0.011 25.3 9.9 29 434-462 318-346 (550)
307 3kae_A CDC27, possible protein 30.8 2E+02 0.0069 22.9 17.0 37 539-575 202-240 (242)
308 2zu6_B Programmed cell death p 30.0 2.1E+02 0.0071 25.5 8.2 68 437-509 169-238 (307)
309 3eu9_A Huntingtin-interacting 29.9 2.3E+02 0.008 23.3 9.5 9 128-136 48-56 (240)
310 2qx5_A Nucleoporin NIC96; mRNA 28.3 4.8E+02 0.016 26.4 21.6 342 159-534 157-564 (661)
311 2fe3_A Peroxide operon regulat 28.3 2E+02 0.0068 22.0 7.2 60 109-169 12-71 (145)
312 2zu6_B Programmed cell death p 27.9 3.2E+02 0.011 24.3 10.2 91 476-570 169-268 (307)
313 3jxi_A Vanilloid receptor-rela 27.5 90 0.0031 26.6 5.6 14 306-319 234-247 (260)
314 2ijq_A Hypothetical protein; s 27.4 2.3E+02 0.0077 22.3 8.6 53 484-536 43-103 (161)
315 2xig_A Ferric uptake regulatio 26.3 2.2E+02 0.0076 21.9 7.7 59 110-169 18-76 (150)
316 1mzb_A Ferric uptake regulatio 26.0 2.1E+02 0.0072 21.5 6.9 59 110-169 9-68 (136)
317 2o03_A Probable zinc uptake re 25.7 1.4E+02 0.0048 22.3 5.6 38 132-169 23-60 (131)
318 2jul_A Calsenilin; EF-hand, ca 25.4 2.7E+02 0.0091 23.7 8.2 146 33-180 91-255 (256)
319 3hra_A Ankyrin repeat family p 25.3 2.6E+02 0.0088 22.3 8.7 12 131-142 14-25 (201)
320 3bge_A Predicted ATPase; struc 25.2 2.8E+02 0.0096 22.6 7.6 20 202-221 20-39 (201)
321 4ets_A Ferric uptake regulatio 25.1 1.7E+02 0.0057 23.0 6.1 59 111-170 25-85 (162)
322 3l6a_A Eukaryotic translation 25.1 2.3E+02 0.0079 26.0 7.8 62 261-326 14-80 (364)
323 1wdy_A 2-5A-dependent ribonucl 24.9 3.2E+02 0.011 23.2 10.8 55 126-188 9-66 (285)
324 2w57_A Ferric uptake regulatio 24.6 2.3E+02 0.0077 21.8 6.7 61 109-170 7-68 (150)
325 1s6c_A KV4 potassium channel-i 24.0 2.6E+02 0.0089 21.9 8.6 129 50-180 36-182 (183)
326 2fe3_A Peroxide operon regulat 24.0 2.4E+02 0.0083 21.5 7.7 67 68-135 6-72 (145)
327 2rpa_A Katanin P60 ATPase-cont 23.7 67 0.0023 21.5 2.9 25 547-571 16-40 (78)
328 2xig_A Ferric uptake regulatio 23.4 2.5E+02 0.0087 21.5 7.3 45 334-378 31-75 (150)
329 1mzb_A Ferric uptake regulatio 23.0 1.8E+02 0.0062 21.9 5.8 15 204-218 33-47 (136)
330 2w2u_A Hypothetical P60 katani 23.0 1.7E+02 0.0057 19.9 4.9 16 520-535 31-46 (83)
331 2b7e_A PRE-mRNA processing pro 23.0 88 0.003 19.6 3.1 28 172-199 4-31 (59)
332 3jxi_A Vanilloid receptor-rela 22.9 1.1E+02 0.0039 26.0 5.3 54 93-146 11-73 (260)
333 3eyy_A Putative iron uptake re 22.7 1.9E+02 0.0066 22.1 6.0 59 109-169 9-67 (145)
334 3kea_A K1L; tropism, ANK repea 22.5 3.8E+02 0.013 23.2 11.6 206 139-363 13-222 (285)
335 3mwm_A ZUR, putative metal upt 22.3 1.3E+02 0.0044 22.9 4.8 46 125-170 19-64 (139)
336 2w57_A Ferric uptake regulatio 21.9 1.9E+02 0.0066 22.2 5.9 35 204-238 32-66 (150)
337 2cos_A Serine/threonine protei 21.6 1.1E+02 0.0036 18.7 3.1 35 530-569 12-48 (54)
338 4gq4_A Menin; tumor suppressor 21.4 3.1E+02 0.011 25.5 7.5 141 405-561 251-398 (489)
339 1k1a_A B-cell lymphoma 3-encod 21.3 3.5E+02 0.012 22.3 12.1 21 129-149 16-36 (241)
340 3bqo_A Telomeric repeat-bindin 21.2 3.4E+02 0.012 22.2 7.4 46 68-113 94-146 (211)
341 2v6y_A AAA family ATPase, P60 20.9 1.9E+02 0.0065 19.5 4.9 19 518-536 21-39 (83)
342 3t8k_A Uncharacterized protein 20.6 3.2E+02 0.011 21.7 10.2 83 171-253 91-180 (186)
343 2keb_A DNA polymerase subunit 20.5 2.3E+02 0.0079 19.9 6.5 56 492-549 28-88 (101)
344 3pvs_A Replication-associated 20.4 5.5E+02 0.019 24.3 14.3 17 308-324 269-285 (447)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-42 Score=356.84 Aligned_cols=500 Identities=10% Similarity=0.025 Sum_probs=409.0
Q ss_pred HHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHH
Q 036303 62 FSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNL 141 (605)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 141 (605)
+.+.|.+..+...+...+. ++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 4556666777777665543 56788999999999999999999999999864 56788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCcccHHHHHHHHhccCChH
Q 036303 142 FDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMREC---------------GVVPNLYTYNALMDGYCKVADVN 206 (605)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~~~~~ 206 (605)
|+.+... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9998654 678899999999999999999999999853322 12335778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 207 RALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAG--NF-FVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCS 283 (605)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 283 (605)
+|++.|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 9999999999864 334455555554443332222111 11 3444443334445566777888999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 036303 284 EMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPN 363 (605)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 363 (605)
++.+. +++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 99875 5889999999999999999999999999999875 3477889999999999999999999999998764 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG 443 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (605)
..++..++..|.+.|++++|.++|+++.... +.+..++..++..|...|++++|..+|+++.+.+ +.+..++..++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 8899999999999999999999999998763 3467899999999999999999999999999875 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHH
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD--NCTYTTMLRG 517 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~ 517 (605)
|.+.|++++|+++|+++.... +.+..+|..++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-----QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 999999999999999998864 567889999999999999999999999999874 55787 6799999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 518 LLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
|.+.|++++|...++++++.+ +.+..+|..++.+|.+.|++++|...++++.+.+|++...
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999999999754 3379999999999999999999999999999999987543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-41 Score=350.26 Aligned_cols=492 Identities=12% Similarity=0.054 Sum_probs=417.0
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKI-EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
.+...|..++..|.+.|++++|+.+|+++ ...|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 45667899999999999999999999988 34567788999999999999999999999998654 6789999999999
Q ss_pred HHccCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 036303 129 CCGQGDVMKALNLFDEMIDK---------------GIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN 193 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 193 (605)
|.+.|++++|+.+|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.++. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 99999999999999953322 22345789999999999999999999999999987543 455666
Q ss_pred HHHHHHhccCChHHHHH--H-HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 036303 194 ALMDGYCKVADVNRALE--F-YHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHC 270 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (605)
.+...+...+..+.+.. + +..+...+..+...++..++..|.+.|++++|.++|+.+.+. +++..+++.++..|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 66655554433322211 1 344444433444555666778888999999999999998875 588999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 271 KAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALS 350 (605)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (605)
+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++++.+.. +.+..++..++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999998765 4578889999999999999999999999998764 5578899999999999999999999
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 351 VCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI 430 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 430 (605)
+|+++.+.. +.+..++..++.+|.+.|++++|+++|+++...+ +.+..++..++.+|...|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998864 3478899999999999999999999999999874 4478899999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN 508 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (605)
+.+..++..++..+.+.|++++|+++|+++....+..+..|+ ..+|..++.+|.+.|++++|++.++++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 568899999999999999999999999999886433234566 7899999999999999999999999999843 3367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHH
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQ 554 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 554 (605)
.+|..++.+|...|++++|.+.++++++ +.| +...+..++.+|.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 7999999999999999999999999998 456 6888888887764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.3e-29 Score=243.43 Aligned_cols=379 Identities=16% Similarity=0.115 Sum_probs=231.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 036303 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA 242 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (605)
.+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..++..++..+...|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 344445555555555554443221 23334444444455555555555555544432 3344455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 243 AGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYK 322 (605)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (605)
|...|+++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555554432 2233445555556666666666666666655532 22333445555556666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 036303 323 EGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVF 402 (605)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 402 (605)
.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+..... +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 43 2345566666666666667777777766666653 2345566666677777777777777777666553 2245666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA 482 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (605)
..+..++...|++++|...++++++.+ +.+..++..++.++.+.|++++|+..|++++... +.+..++..++.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-----PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccHHHHHHHHHH
Confidence 677777777777777777777777654 4456677777777777777777777777777653 4566677777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCC
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGD 558 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 558 (605)
+...|++++|++.++++.+ ..|+ ..++..++.++.+.|++++|...++++++ +.| +..++..++.++...|+
T Consensus 315 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence 7777788888887777776 3343 45777777777777888888888777776 345 47777777777766653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-28 Score=239.45 Aligned_cols=361 Identities=15% Similarity=0.116 Sum_probs=175.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 92 NGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV 171 (605)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (605)
..+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34445555555555555555442 2234444445555555555555555555555442 234455555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 172 EAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMA 251 (605)
Q Consensus 172 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (605)
+|...|+++....+. +..+|..++.++.+.|++++|++.|+++++.+ +.+...+..+...+...|++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555555555543221 23345555555555555555555555555432 2223334444455555555555555555554
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036303 252 KFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVT 331 (605)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 331 (605)
+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 432 2234445555555555555555555555554432 2233444445555555555555555555544432 123444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 332 YNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK 411 (605)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (605)
+..+...+...|++++|...++++.+.+ +.+..++..++.++...|++++|...|+++.... +.+..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 4555555555555555555555555442 1234444444455555555555555555444432 2234444444444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 412 DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
.|++++|...++++++.. +.+..++..++.++.+.|++++|+..|++++.
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555444432 23344444444444445555555555544444
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-27 Score=238.58 Aligned_cols=453 Identities=11% Similarity=0.026 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHG 163 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (605)
...+...+..+.+.|++++|+..|+++...+ |+...+..++.++.+.|++++|+..++++++.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567777888888888888888888888864 578888888888888888888888888888774 3366788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 036303 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAA 243 (605)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 243 (605)
+...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+......-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 8888888888888888887653 244444444444444333333333333333222222221111110000000111111
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 036303 244 GNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG---VGQLEGAEGLLQKM 320 (605)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 320 (605)
..+...+......+. . .....+.+...+......+.. .|++++|...++++
T Consensus 162 ~~~~~~~~~~~~~~~----------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 162 TSMASFFGIFKPELT----------------F----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp HHHHHHHTTSCCCCC----------------C----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHH----------------H----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 111111111000000 0 000001112233333333332 55566666666655
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 321 YK-----EGI--------LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 321 ~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
.. ... +.+..++..+...+...|++++|...++++.+.... ...+..++.++...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55 210 112334555556666666666666666666655322 555566666666666666666666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (605)
+++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..++++....
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 368 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--- 368 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---
Confidence 6666543 2244555666666666666666666666666654 3345556666666666666666666666666542
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 036303 468 YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-------NCTYTTMLRGLLR---AKRMLDVMMLLADMIKM 537 (605)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 537 (605)
+.+...+..++.++...|++++|.+.++++.+. .|+ ...+..++.++.. .|++++|...++++++.
T Consensus 369 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 369 --PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp --TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred --ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 233455566666666666666666666666552 222 2256666666666 66666666666666653
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 538 GIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 538 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
. +.+..++..++.+|.+.|++++|...++++.+.+|++..
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 2 124566666666666667777776666666666665443
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-26 Score=228.63 Aligned_cols=462 Identities=10% Similarity=-0.005 Sum_probs=319.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI-EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
....+...+..+.+.|++++|+..|+++ ...|+..++..++.++.+.|++++|...|+++.+.+ +.+..++..++.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 4567889999999999999999999988 334689999999999999999999999999999885 34778999999999
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
...|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 157 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN----- 157 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C-----
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC-----
Confidence 99999999999999999985 345555555666555555555555555544444333333322221111111111
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCK---AGNLFEAMSLCSEME 286 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 286 (605)
.|+.......+..+...... .....+.+...+......+.. .|++++|...|+++.
T Consensus 158 -----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 158 -----------LPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp -----------CCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred -----------CchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 11211111111100000000 000012223333334443443 677777777777776
Q ss_pred h-----CCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 287 K-----FEI--------SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 287 ~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
+ ... +.+..++..+...+...|++++|...++++..... +...+..+...+...|++++|...++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5 311 12345667777788888888888888888887643 37778888888888888888888888
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 354 QMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS 433 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 433 (605)
++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 888764 3366778888888899999999999999888774 3356678888888999999999999999988764 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCC-CH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYAAIIQALCY---DGQILKASKLFSDMRSDNLRP-DN 508 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p-~~ 508 (605)
..++..++..+...|++++|+..++++....+.... ......+..++.++.. .|++++|...++++.+ ..| +.
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~ 449 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSE 449 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccH
Confidence 778888899999999999999999998875421100 0013378888999999 9999999999999988 344 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHH
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVM 549 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 549 (605)
.++..+..++...|++++|...++++++ +.|+ ...+..+
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~ 489 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHHHHH
Confidence 6888899999999999999999999998 4454 4444443
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.1e-28 Score=236.39 Aligned_cols=200 Identities=19% Similarity=0.251 Sum_probs=106.4
Q ss_pred HHHHHHHCCCCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHHHH
Q 036303 106 FYEEMVLCGLVADVV-TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK---------MVEAES 175 (605)
Q Consensus 106 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~ 175 (605)
+.+.+.+.+..+.+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|.+.+. ++.|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 334444444433332 4555566666666666666666666666666666666666666654433 345555
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 176 MFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGV 255 (605)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (605)
+|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLC 305 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (605)
.||..+|+.++.+|++.|++++|.++|++|.+.+..|+..||+.++..|.
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555444
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-27 Score=235.43 Aligned_cols=205 Identities=18% Similarity=0.249 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC---------hH
Q 036303 137 KALNLFDEMIDKGIEPTV-VIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVAD---------VN 206 (605)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~ 206 (605)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|.+.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666555443 35788889999999999999999999999999999999999998887654 56
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 207 RALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEME 286 (605)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 286 (605)
+|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77788888887788888888888888888888888888888888877777888888888888888888888888888888
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036303 287 KFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK 341 (605)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (605)
+.|+.||..+|+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7788888888888888888888888888888888877777888888777777654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=6.9e-25 Score=223.08 Aligned_cols=435 Identities=11% Similarity=0.035 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 85 QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGL 164 (605)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (605)
..+..++..+.+.|++++|+..|+++.... +.++..+..+..++...|++++|+..++++++.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 455666666666677777777777666653 2356666666667777777777777777666653 33556666666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHH
Q 036303 165 CNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHN--LQPNVVTFGVLMDGLCKVGELRA 242 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 242 (605)
...|++++|...|+.+ ... |+. ....+..+...+....|...++.+.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 7777777777766532 221 111 1112333334444566666666665431 01111112223333444444444
Q ss_pred HHHHHHHHHHCCCCCCHh-hHHHHHHHH--------HhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHh
Q 036303 243 AGNFFVHMAKFGVFPNIF-VYNCLIDGH--------CKAGNLFEAMSLCSEMEKFEISPDV-------FTYNILIKGLCG 306 (605)
Q Consensus 243 a~~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 306 (605)
+...+...... .+... ....+...+ ...|++++|..+++++.+.. +.+. .++..+...+..
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 43333222211 11111 112222111 12346778888888877643 2222 245556667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 307 VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGL 386 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 386 (605)
.|++++|...++++.... |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 888888888888887763 446777778888888888888888888887764 33667777888888888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 387 YTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..|++++...+.
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 88877663 2345667777777888888888888888887764 455667777788888888888888888877664321
Q ss_pred CC-CCccHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 467 GY-CSPNHVLYAAIIQALCYD----------GQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 467 ~~-~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
.. .......+.....++... |++++|+..++++.+ ..| +...+..+..++...|++++|...++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 111122233445566666 788888888888776 334 3457777777777888888888888877
Q ss_pred HH
Q 036303 535 IK 536 (605)
Q Consensus 535 ~~ 536 (605)
++
T Consensus 489 l~ 490 (537)
T 3fp2_A 489 AI 490 (537)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=5.6e-24 Score=216.40 Aligned_cols=438 Identities=13% Similarity=0.047 Sum_probs=330.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
.+..+..++..+.+.|++++|+..|+++ ..|.+..++..++.++.+.|++++|++.|+++...++ .+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 3467889999999999999999999988 3567889999999999999999999999999998853 478899999999
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHhccCChH
Q 036303 129 CCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGV--VPNLYTYNALMDGYCKVADVN 206 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~ 206 (605)
+...|++++|+..|+ .... .|+. ....+..+...+...+|...++.+....+ .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999997 4433 2221 22234455566667889999999876421 112223344555566666666
Q ss_pred HHHHHHHHHHhCCCCCCcc-hHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC-------HhhHHHHHHHHH
Q 036303 207 RALEFYHEMLHHNLQPNVV-TFGVLMDGLC--------KVGELRAAGNFFVHMAKFGVFPN-------IFVYNCLIDGHC 270 (605)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~ 270 (605)
.+...+...... .+... ....+...+. ..|++++|..+++.+.+.. +.+ ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 665544332221 11111 2222222221 2257899999999998754 222 224666778889
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 271 KAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALS 350 (605)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (605)
..|++++|...++.+.... |+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999998854 567888889999999999999999999998875 4478889999999999999999999
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 351 VCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI 430 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 430 (605)
.++++.+..+ .+...+..+..++...|++++|...++++.... +.+...+..+...+...|++++|...++++++...
T Consensus 332 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999998743 356788899999999999999999999998874 44667888899999999999999999999886531
Q ss_pred -----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 036303 431 -----TPSVFTVSSLIHGLFKN----------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKL 495 (605)
Q Consensus 431 -----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 495 (605)
......+...+.++... |++++|+..|++++... +.+...+..++.++...|++++|.+.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-----PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 11222344556677777 99999999999999864 45678899999999999999999999
Q ss_pred HHHHHhCCCCCCHH
Q 036303 496 FSDMRSDNLRPDNC 509 (605)
Q Consensus 496 ~~~~~~~~~~p~~~ 509 (605)
|+++.+ +.|+..
T Consensus 485 ~~~al~--~~~~~~ 496 (537)
T 3fp2_A 485 FEDSAI--LARTMD 496 (537)
T ss_dssp HHHHHH--HC--CH
T ss_pred HHHHHH--hCCCcH
Confidence 999998 556544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=7.2e-24 Score=210.38 Aligned_cols=356 Identities=12% Similarity=0.040 Sum_probs=236.0
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 188 NLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLID 267 (605)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 267 (605)
+...+..++..+.+.|++++|+..|++++... +.+..++..++.++...|++++|...++.+.+.+ +.+...+..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44455556666666666666666666665542 3345555566666666666666666666665543 234455555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 268 GHCKAGNLFEAMSLCSEMEKFEISPDV---FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD 344 (605)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (605)
+|...|++++|...|+++.+.. +.+. ..+..++..+.. ..+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 6666666666666666665532 1122 333333222110 011222344666777
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (605)
+++|...++++.+.. +.+...+..++.+|...|++++|...|+++.... +.+..++..++..+...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777777653 3366677777777777777777777777776653 33566777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHH
Q 036303 425 MLEAKITPSVFTVSSL------------IHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQIL 490 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 490 (605)
+++.. +.+...+..+ +..+.+.|++++|+..|++++...+. .+. ...+..++.++.+.|+++
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS---IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHCCCHH
Confidence 77653 3344444433 78888999999999999999875321 111 346788889999999999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHH------------HHHHhc
Q 036303 491 KASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMV------------RGYQEN 556 (605)
Q Consensus 491 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~------------~~~~~~ 556 (605)
+|+..++++.+ ..| +...|..++.+|...|++++|...++++++ +.| +..++..++ ..|...
T Consensus 313 ~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 313 EAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 99999999887 345 567899999999999999999999999987 456 577777777 345555
Q ss_pred C-----ChhHHHHHHHH-HHhcCCCCCCC
Q 036303 557 G-----DLKSAFRCSEF-LKESRIGSSET 579 (605)
Q Consensus 557 g-----~~~~A~~~~~~-~~~~~~~~~~~ 579 (605)
| +.+++.+.+++ +.+..|++.+.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~~~pd~~~~ 417 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQWHPDNFQN 417 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHHSCGGGCCS
T ss_pred CCCccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 5 67788998886 77888877654
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.8e-23 Score=207.51 Aligned_cols=329 Identities=15% Similarity=0.083 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 102 SVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMR 181 (605)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (605)
.+...+.++.... +.+...+..++..+.+.|++++|+.+|+.+.+.. +.+..++..++.++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555442 3356677777777778888888888888777653 3466777777777888888888888888777
Q ss_pred HCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 182 ECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNV---VTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN 258 (605)
Q Consensus 182 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (605)
+.++. +..++..++.++.+.|++++|.+.|+++.... +.+. ..+..++..+..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH----------------------
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH----------------------
Confidence 76433 56667777777777777777777777777642 2222 333333332111
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 259 IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDG 338 (605)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (605)
..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..++..
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 112223445666777777777777776643 3456667777777777777777777777776653 3456777777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----Hhh
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSL------------IDGQCKAGNIDAAMGLYTEMVIKSLVPD-----VVV 401 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 401 (605)
+...|++++|...++++....+ .+...+..+ +..+...|++++|...|+++... .|+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHH
Confidence 7777777777777777776532 233333333 55666666677776666666654 222 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 402 FTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 402 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
+..+...+.+.|++++|...++++++.. +.+..++..++.+|...|++++|+..|+++++.
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5556666666666666666666666543 445666666666666666666666666666654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=4.3e-21 Score=184.17 Aligned_cols=318 Identities=13% Similarity=0.084 Sum_probs=209.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036303 226 TFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLC 305 (605)
Q Consensus 226 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (605)
.+..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34445555555555555555555554432 2334445555555555555555555555554432 223344444555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 036303 306 GVGQLEGAEGLLQKMYKEGIL--ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAA 383 (605)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 383 (605)
..|++++|...++++.+.... .+...+..+...+. ...+..+...+...|++++|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHHH
Confidence 555555555555555443210 01112211111000 00112235677778888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 384 MGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++...
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888887663 3466777778888888888888888888888764 566778888888888888888888888888775
Q ss_pred cCCCCCCccHHHHH------------HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHH
Q 036303 464 TDGGYCSPNHVLYA------------AIIQALCYDGQILKASKLFSDMRSDNLRPDNC-----TYTTMLRGLLRAKRMLD 526 (605)
Q Consensus 464 ~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~ 526 (605)
. +.+...+. .++..+...|++++|+..++++.+ ..|+.. .+..+..++...|++++
T Consensus 218 ~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 218 D-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp C-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred C-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 3 23333332 336678899999999999999998 345432 34557788999999999
Q ss_pred HHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 527 VMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 527 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
|...++++++. .| +..++..++.+|...|++++|...++++.+.+|++...
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 291 AIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 99999999974 45 68899999999999999999999999999999886643
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=2.6e-19 Score=178.93 Aligned_cols=384 Identities=14% Similarity=0.029 Sum_probs=232.2
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCc
Q 036303 153 TVVIYTILIHGLCN----ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCK----VADVNRALEFYHEMLHHNLQPNV 224 (605)
Q Consensus 153 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 224 (605)
+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444445555544 455555555555555432 33444445555554 555555555555555433 33
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhh
Q 036303 225 VTFGVLMDGLCK----VGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCK----AGNLFEAMSLCSEMEKFEISPDVFT 296 (605)
Q Consensus 225 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 296 (605)
..+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|++.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444455555554 456666666666655543 34445555555555 556666666666666542 4555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 036303 297 YNILIKGLCG----VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK----EGDMEKALSVCSQMTEKGVEPNVVTFS 368 (605)
Q Consensus 297 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (605)
+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5556666655 566777777776666653 45556666666654 567777777777766653 344555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036303 369 SLIDGQCK----AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKD-----GNMKETLRLYKEMLEAKITPSVFTVSS 439 (605)
Q Consensus 369 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (605)
.+...|.. .+++++|+..|++..+.+ +...+..+...|... +++++|...|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 56666666 677777777777776553 445556666666665 77777888777777754 4456666
Q ss_pred HHHHHHhcC---CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036303 440 LIHGLFKNG---RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY----DGQILKASKLFSDMRSDNLRPDNCTYT 512 (605)
Q Consensus 440 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (605)
++..+...| ++++|++.|++..+. .++..+..+...|.. .+++++|.+.|+++.+.+ ++..+.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAK-------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 777666655 677788888777763 345666777777776 678888888888877743 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-c-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 513 TMLRGLLR----AKRMLDVMMLLADMIKMGIV-P-DAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 513 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
.+...|.. .+++++|...++++.+.+.. | ++.....++..+.. +.+.|.+..++..+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHH
Confidence 77777776 67888888888888765533 2 45555555554443 334444444444443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=8.1e-19 Score=175.34 Aligned_cols=366 Identities=13% Similarity=0.054 Sum_probs=311.0
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHH
Q 036303 173 AESMFRSMRECGVVPNLYTYNALMDGYCK----VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCK----VGELRAAG 244 (605)
Q Consensus 173 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 244 (605)
+...++...+.| +...+..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555555543 66777788888887 899999999999998864 56788889999998 89999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 036303 245 NFFVHMAKFGVFPNIFVYNCLIDGHCK----AGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG----VGQLEGAEGL 316 (605)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 316 (605)
..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998865 66777788888888 889999999999998864 56677788888877 7899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 036303 317 LQKMYKEGILANVVTYNSLIDGYCK----EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK----AGNIDAAMGLYT 388 (605)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 388 (605)
|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 78888899999988 899999999999999875 56777888888886 789999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 036303 389 EMVIKSLVPDVVVFTALIDGLSK----DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN-----GRISNALNFFLE 459 (605)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~ 459 (605)
+....+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...+... +++++|+..|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998764 56677778888877 899999999999998764 566788888888887 899999999999
Q ss_pred hhhccCCCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 036303 460 KTDKTDGGYCSPNHVLYAAIIQALCYDG---QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRMLDVMMLLA 532 (605)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 532 (605)
+.+. .+...+..+...|...| ++++|+++|+++.+. .++..+..+...|.. .+++++|...++
T Consensus 322 a~~~-------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 322 SAEQ-------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHT-------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHhc-------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9874 34567778888887766 889999999999984 367788889999988 899999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC
Q 036303 533 DMIKMGIVPDAVINQVMVRGYQE----NGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 533 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 575 (605)
++.+.+ ++..+..++.+|.. .+++++|..+|+++.+.+|+
T Consensus 392 ~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 392 KAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999865 57889999999998 89999999999999999865
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=3.3e-20 Score=177.90 Aligned_cols=329 Identities=12% Similarity=0.048 Sum_probs=231.0
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 188 NLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLID 267 (605)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 267 (605)
+...+..+...+...|++++|+..|+++++.. +.+..++..++..+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567888999999999999999999998864 5567889999999999999999999999998864 446788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 268 GHCKAGNLFEAMSLCSEMEKFEISP----DVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG 343 (605)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (605)
.+...|++++|...++++.+.. | +...+..+..... ...+..+...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 9999999999999999998854 4 3333333321100 111223344555566
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 344 DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYK 423 (605)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (605)
++++|...++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666655542 2345555556666666666666666666665542 3345555566666666666666666666
Q ss_pred HHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccH----HHHHHHHHHHHccC
Q 036303 424 EMLEAKITPSVFTVS------------SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNH----VLYAAIIQALCYDG 487 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 487 (605)
++.+.. +.+...+. .++..+.+.|++++|+..++++....+ .+. ..+..++.++...|
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHHHHcc
Confidence 666543 22233222 336667888999999999988887642 222 23456778888899
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 488 QILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
++++|++.++++.+ ..| +...+..+..++...|++++|...++++++ +.| +..++..+..++..
T Consensus 287 ~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 287 KPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence 99999999999887 345 566888888899999999999999999987 445 46677777665543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.4e-20 Score=178.21 Aligned_cols=294 Identities=14% Similarity=0.037 Sum_probs=192.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSL 335 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 335 (605)
+.+...+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4455566667777777788888888777776643 3445556666677777777777777777777653 3355667777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 036303 336 IDGYCKEG-DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414 (605)
Q Consensus 336 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (605)
...+...| ++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777777 7777777777777664 2345666777777777777777777777776653 2234455556667777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC----CccHHHHHHHHHHHHccCCHH
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC----SPNHVLYAAIIQALCYDGQIL 490 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 490 (605)
+++|...++++++.. +.+..++..++..+...|++++|+..+++++......+. +....++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 777777777777654 445666777777777777777777777776664322111 223456666667777777777
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHH-HhcCC
Q 036303 491 KASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGY-QENGD 558 (605)
Q Consensus 491 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~ 558 (605)
+|+..++++.+. .| +...+..+..++...|++++|...++++++ +.| +..++..++.++ ...|+
T Consensus 254 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCc
Confidence 777777776662 23 344666666677777777777777776665 334 466666666666 34444
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=9e-20 Score=172.66 Aligned_cols=286 Identities=8% Similarity=-0.035 Sum_probs=218.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 036303 291 SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSL 370 (605)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (605)
+.+...+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4555667777788888888888888888887764 3345566667777788888888888888888764 3366777888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 371 IDGQCKAG-NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGR 449 (605)
Q Consensus 371 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (605)
...+...| ++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 88888888 8888888888888764 3356677788888888888888888888888765 4455667778888888888
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhc
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN--------LRPDNCTYTTMLRGLLRA 521 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~ 521 (605)
+++|+..+++++... +.+...+..++..+...|++++|+..++++.+.. .+.....+..+..++...
T Consensus 175 ~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 175 SKLAERFFSQALSIA-----PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 888888888888764 4567788888888888888888888888887631 123355788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhh
Q 036303 522 KRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRS 586 (605)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 586 (605)
|++++|...++++++.. +.+..++..++.+|.+.|++++|...++++.+.+|++..........
T Consensus 250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 88888888888888643 22577888888888888888888888888888888766554444433
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=1.6e-17 Score=173.07 Aligned_cols=499 Identities=12% Similarity=0.108 Sum_probs=333.5
Q ss_pred hhhHhhcCCchHH----HHHHHHH-HHHHhhcCCCcccHHHHHHHHh---hCcCCCCCHHhHHHHHHHHHhcCChHHHH-
Q 036303 2 FYVLANAKLYKNA----RCLIKDV-TENLLKSRKPHHVCYSVFNALN---SLEIPKFNPSVFSTLIIAFSEMGHIEEAL- 72 (605)
Q Consensus 2 ~~~~~~~~~~~~a----~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~- 72 (605)
+.++..+++-|+. ...|+++ ++.++..++|. .+.-.|+.=. .+..-......|...++.+.+..+.+-=-
T Consensus 880 akiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~-la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~ 958 (1630)
T 1xi4_A 880 AKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPH-LACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGS 958 (1630)
T ss_pred HHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcc-hHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHH
Confidence 3445555554444 3344444 56777777777 5444444300 00000112234445555555544433111
Q ss_pred ----------HHHHhc-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHccCCh
Q 036303 73 ----------WVYRKI-----EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGL--VADVVTYGVLIDCCCGQGDV 135 (605)
Q Consensus 73 ----------~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 135 (605)
++.++. +...++.--...+.+|...|.+.+|+++++++...+- ..+...-+.++.+.++. +.
T Consensus 959 vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~ 1037 (1630)
T 1xi4_A 959 VLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DR 1037 (1630)
T ss_pred HhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Ch
Confidence 122211 2223344445667888889999999999999884321 12344555666666666 55
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 136 MKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
.+..+...++... + ...+...+...|.+++|..+|++... .....+.++. ..+++++|.+++++.
T Consensus 1038 ~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv 1102 (1630)
T 1xi4_A 1038 TRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC 1102 (1630)
T ss_pred hhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc
Confidence 6666666665422 2 34477788889999999999988531 2222233332 678889999888754
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 036303 216 LHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVF 295 (605)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 295 (605)
-++.+|..++.++...|++++|...|.+. .+...|..++.++.+.|++++|.+.|....+.. +++.
T Consensus 1103 ------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~ 1168 (1630)
T 1xi4_A 1103 ------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESY 1168 (1630)
T ss_pred ------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cccc
Confidence 24678889999999999999999998664 466677888999999999999999998877754 3333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 036303 296 TYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQC 375 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (605)
..+.++.+|.+.+++++...++ . .++...+..+...|...|++++|..+|..+ ..|..++.++.
T Consensus 1169 Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1169 VETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 1232 (1630)
T ss_pred ccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHH
Confidence 3445888888888888544442 2 346667778888999999999999999875 36888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 376 KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 376 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
+.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.
T Consensus 1233 kLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred HhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988763 668888888889888998888876654 23466677788888999999999999
Q ss_pred HHHHhhhccCCCCCCccHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHH
Q 036303 456 FFLEKTDKTDGGYCSPNHVLYAAIIQALCY--DGQILKASKLFSDMRSDNLRP------DNCTYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A 527 (605)
+++..+... +.+...|+-+..++.+ -++..++.++|..-.+ ++| +...|..++-.|.+.|+++.|
T Consensus 1302 LlE~aL~Le-----raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1302 MLEAALGLE-----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHhccC-----hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 998887643 3345556556666554 3456666666665443 443 455788888889899999988
Q ss_pred HHHH-------------HHHHHCCCCccHHHHHHHHHHHHhcC---------------ChhHHHHHHH
Q 036303 528 MMLL-------------ADMIKMGIVPDAVINQVMVRGYQENG---------------DLKSAFRCSE 567 (605)
Q Consensus 528 ~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 567 (605)
.... +..+. -..++++|...+..|...+ |++.+.+.++
T Consensus 1375 ~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1375 IITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 8322 11111 2336888888888888777 7777766665
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.5e-18 Score=175.24 Aligned_cols=432 Identities=10% Similarity=0.049 Sum_probs=298.0
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036303 107 YEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVV 186 (605)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (605)
|++.++.. +-+...|..++.. .+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|..+|++.+...
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 56666654 3378889988884 77899999999999999873 4577789999999999999999999999998863
Q ss_pred CCcccHHHHHHHH-hccCChHHHHH----HHHHHHhC-CCCC-CcchHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 036303 187 PNLYTYNALMDGY-CKVADVNRALE----FYHEMLHH-NLQP-NVVTFGVLMDGLCK---------VGELRAAGNFFVHM 250 (605)
Q Consensus 187 p~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 250 (605)
|+...|...+... ...|+++.|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|+.+
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777777776533 34577776655 66666543 4333 34455555555443 56778888888887
Q ss_pred HHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH------H
Q 036303 251 AKFGVFPN--IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMY------K 322 (605)
Q Consensus 251 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~ 322 (605)
++. +.+ ...|..........|. . +...++. ...+++..|..++..+. +
T Consensus 157 l~~--P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 157 CVN--PMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp TTS--CCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred Hhc--hhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 762 211 1222222111100110 0 0011110 12344555655555422 1
Q ss_pred CC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-------
Q 036303 323 EG---ILAN--------VVTYNSLIDGYCKE----GDM----EKALSVCSQMTEKGVEPNVVTFSSLIDGQCK------- 376 (605)
Q Consensus 323 ~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 376 (605)
.. ++|+ ...|...+...... ++. .++..+|++++... +.+...|..++..+..
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhh
Confidence 11 2333 23444444332221 222 47778898888763 4477888888888775
Q ss_pred cCCHH-------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 036303 377 AGNID-------AAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV-FTVSSLIHGLFKNG 448 (605)
Q Consensus 377 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 448 (605)
.|+++ +|..+|++.+..-.+.+...+..++..+...|++++|..+|+++++.. +.+. .+|..++..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhc
Confidence 68887 899999999863234467888889999999999999999999999863 2233 57888888888999
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH-HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA-LCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLD 526 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 526 (605)
++++|+++|++++... +.+...+...+.. +...|++++|.++|+++++ ..| +...|..++..+.+.|+.++
T Consensus 371 ~~~~A~~~~~~Al~~~-----~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHTCT-----TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred CHHHHHHHHHHHHhcc-----CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhh
Confidence 9999999999998753 2223333322222 3358999999999999988 445 46689899999999999999
Q ss_pred HHHHHHHHHHCC-CCcc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 527 VMMLLADMIKMG-IVPD--AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 527 A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
|..+|++++..+ ..|+ ..+|...+......|+.+.+.++.+++.+.-|++
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 999999999753 3342 5588888888899999999999999999998853
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=4.3e-18 Score=171.88 Aligned_cols=423 Identities=11% Similarity=0.091 Sum_probs=239.0
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.|.+..+|..++. +.+.|++++|..+|+++ ..|.+...|..++..+.+.|++++|..+|++++... |+...|...
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 4557777777776 36677888888888776 345566777777777777788888888888777653 466666666
Q ss_pred HHHH-HccCChhHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCc
Q 036303 126 IDCC-CGQGDVMKALN----LFDEMIDK-GIEP-TVVIYTILIHGLCN---------ENKMVEAESMFRSMRECGVVPNL 189 (605)
Q Consensus 126 ~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~ 189 (605)
+... ...|+.+.|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|++.++. |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 6433 34566666554 55555432 3322 34556655554443 44555555555555542 211
Q ss_pred ---ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036303 190 ---YTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLI 266 (605)
Q Consensus 190 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 266 (605)
..|..........|. .+...++. ...+++..|..++......
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~------------- 207 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETV------------- 207 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHH-------------
Confidence 111111110000000 00000000 0112233333333321100
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---CCCC--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCC
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFE---ISPD--------VFTYNILIKGLCGV----GQL----EGAEGLLQKMYKEGILA 327 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~ 327 (605)
....+.. ++|+ ...|...+...... ++. +.+..+|+++.... +.
T Consensus 208 ----------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~ 270 (530)
T 2ooe_A 208 ----------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GH 270 (530)
T ss_dssp ----------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TT
T ss_pred ----------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CC
Confidence 0011100 1121 12233322221111 121 35556666666542 33
Q ss_pred CHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 328 NVVTYNSLIDGYCK-------EGDME-------KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK 393 (605)
Q Consensus 328 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 393 (605)
+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+..++..+...|++++|..+|++++..
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 56666666666554 56665 77777777775212345667777777777778888888888877775
Q ss_pred CCCCC-H-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhccCCCCCC
Q 036303 394 SLVPD-V-VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG-LFKNGRISNALNFFLEKTDKTDGGYCS 470 (605)
Q Consensus 394 ~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (605)
.|+ . ..|..++..+.+.|++++|..+|++.++.. +.+...+...+.. +...|+.++|..+|+..++.. +
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p 422 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----G 422 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----T
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----C
Confidence 333 2 467777777777777888888888877653 2233333322222 335788888888888877763 3
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDN-LRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+...|..++..+...|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+..++.+
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 423 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777788888888888888888888887753 2332 33666777777777888888888887775
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=2.5e-16 Score=164.21 Aligned_cols=413 Identities=13% Similarity=0.107 Sum_probs=310.2
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIEVL-----PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTY 122 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 122 (605)
...+|.-....+.+|...|.+.+|+++++++... .+....+.++.+.++. +..+..+..+++... + .
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---A 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---H
Confidence 3458888889999999999999999999998422 3345667777777777 556666666665432 1 3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 036303 123 GVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV 202 (605)
Q Consensus 123 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 202 (605)
..+...+...|.+++|..+|++... .....+.+ +...+++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 3477888899999999999999631 22222333 227788999999888652 567899999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 203 ADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLC 282 (605)
Q Consensus 203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 282 (605)
|++++|++.|.+. .+...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|.+.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999663 477788999999999999999999999888754 34444456889999999988644442
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 036303 283 SEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP 362 (605)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (605)
. .++...|..+...|...|++++|..+|..+ ..|..++.++.+.|+++.|.+.+++..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------
Confidence 2 356667778999999999999999999885 378999999999999999999998772
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... +-....+..++.
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 5688888899999999999998876542 3366677889999999999999999999888765 445556666666
Q ss_pred HHHh--cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHH-------------HHHHHhCCCCCC
Q 036303 443 GLFK--NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKL-------------FSDMRSDNLRPD 507 (605)
Q Consensus 443 ~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~ 507 (605)
.+++ -++.-+++++|.+-....+--....+...|..+...|.+.|+++.|... |+..+. ...|
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence 6654 4567777777776655211000113567788899999999999988832 222222 2345
Q ss_pred HHHHHHHHHHHHh
Q 036303 508 NCTYTTMLRGLLR 520 (605)
Q Consensus 508 ~~~~~~l~~~~~~ 520 (605)
+..|...+.-|..
T Consensus 1401 ~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1401 VELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666653
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.3e-19 Score=174.43 Aligned_cols=265 Identities=11% Similarity=-0.004 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 036303 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQ 374 (605)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (605)
..+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..++.++
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555555555566666666666655543 2345555555556666666666666666555543 22455555566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHH----------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHH
Q 036303 375 CKAGNIDAAMGLYTEMVIKSLVPDVVVFT----------------ALIDGLSKDGNMKETLRLYKEMLEAKITP--SVFT 436 (605)
Q Consensus 375 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~ 436 (605)
...|++++|...++++...... +...+. .+.. +...|++++|...++++++.. +. +..+
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 219 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDV 219 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHH
Confidence 6666666666666665554211 111111 2333 338899999999999999875 33 5888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTML 515 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 515 (605)
+..++.++...|++++|+..+++++... +.+..++..++.++...|++++|+..++++.+ ..| +...+..+.
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~ 292 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-----PNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 9999999999999999999999998863 45678899999999999999999999999988 445 466889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCc----------cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 516 RGLLRAKRMLDVMMLLADMIKMGIVP----------DAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
.+|...|++++|...++++++..... ...+|..++.+|...|++++|..++++..+
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 99999999999999999998632111 168999999999999999999998876554
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=4e-18 Score=170.01 Aligned_cols=391 Identities=12% Similarity=-0.053 Sum_probs=233.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHhccCChHHHHHHHHHHHhC-----C
Q 036303 153 TVVIYTILIHGLCNENKMVEAESMFRSMREC-----G--VVP-NLYTYNALMDGYCKVADVNRALEFYHEMLHH-----N 219 (605)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 219 (605)
....|+.+..++...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888888889999999888877542 1 112 3456778888888888888888888876542 1
Q ss_pred -CC-CCcchHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCC
Q 036303 220 -LQ-PNVVTFGVLMDGLCK--VGELRAAGNFFVHMAKFGVFPNIFVYNCLIDG---HCKAGNLFEAMSLCSEMEKFEISP 292 (605)
Q Consensus 220 -~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 292 (605)
.. ....++.....++.. .+++++|...|+++.+.. |.+...+..+..+ +...++.++|++.+++..+.+ +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 01 123345545444444 345788888888877653 2334444444433 334566777777777776643 23
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 036303 293 DVFTYNILIKGLCG----VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFS 368 (605)
Q Consensus 293 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (605)
+..++..+...+.. .+++++|...+++..... +.+...+..+...|...|++++|...++++.+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 44455444444433 356677777777776654 3456677777777888888888888888777763 23555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG 448 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (605)
.+..+|...+.... ... ...........+.++.|...+++..+.+ +.+..++..++..+...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 66555533211110 000 0000011112234678888888888765 556677888999999999
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccH--HHHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNH--VLYAAIIQ-ALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (605)
++++|+..|++++.... .+.. ..+..+.. .....|++++|+..|+++++ +.|+....... ..
T Consensus 349 ~~~~A~~~~~kaL~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~ 413 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKEL----TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KD 413 (472)
T ss_dssp CHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HH
T ss_pred cHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HH
Confidence 99999999999987531 1211 12223332 24578999999999999998 67775543322 23
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
.+.+++++.++.. +.++.+|..++.+|...|++++|++.|+++++.+|..+.+.
T Consensus 414 ~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 414 KLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 4455666666532 33688999999999999999999999999999988876553
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=5.3e-19 Score=170.17 Aligned_cols=307 Identities=10% Similarity=-0.050 Sum_probs=187.5
Q ss_pred HHhccCChHHHHH-HHHHHHhCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 036303 198 GYCKVADVNRALE-FYHEMLHHNL---QPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG 273 (605)
Q Consensus 198 ~~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (605)
++...|++++|++ .+++...... ..+...+..++..+...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444455566655 5554433210 0123445555555556666666666666555543 334445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 274 NLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
++++|...|+++.+.. +.+..++..+...+...|++++|...++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 5555555555555433 234445555555555555555555555555544211 11111000000 00
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 354 QMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP 432 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (605)
. .. ....+..+...+ ..|++++|...++++....... +..++..+...+...|++++|...++++++.. +.
T Consensus 178 ----~-~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 ----G-AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ----h-hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 00 000111233333 7889999999999888764221 47788888899999999999999999988865 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----- 507 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----- 507 (605)
+..++..++.++...|++++|+..|++++... +.+..++..++.++...|++++|...++++.+. .|+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 322 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-----PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPR 322 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCcc
Confidence 67888999999999999999999999988763 456788889999999999999999999998872 232
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 508 -------NCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 508 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
..+|..+..++...|++++|..++.+.+
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 4689999999999999999998876443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=6.6e-19 Score=169.23 Aligned_cols=264 Identities=8% Similarity=-0.035 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 036303 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQ 374 (605)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (605)
..+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..++.+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666665543 2345566666666666666666666666666543 23455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 036303 375 CKAGNIDAAMGLYTEMVIKSLV---------PDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP--SVFTVSSLIHG 443 (605)
Q Consensus 375 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 443 (605)
...|++++|...++++...... .....+..+...+...|++++|...++++++.. +. +..++..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 6666666666666666554100 012233445778888999999999999998875 33 68889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAK 522 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 522 (605)
+...|++++|+..|++++... +.+..+|..++.++...|++++|+..|+++.+ ..|+ ..++..+..+|...|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-----PEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCC
Confidence 999999999999999998864 55688899999999999999999999999988 4554 668889999999999
Q ss_pred CHHHHHHHHHHHHHCCCC-----------ccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 523 RMLDVMMLLADMIKMGIV-----------PDAVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
++++|...++++++.... .+..+|..++.++...|+.+.|.++.++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999863211 0267899999999999999988877655
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.4e-18 Score=164.22 Aligned_cols=269 Identities=10% Similarity=-0.038 Sum_probs=181.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 036303 298 NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA 377 (605)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (605)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444432 2234444444444445555555555555444432 22344444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHH-------------H-HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTA-------------L-ID-GLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
|++++|...++++...... +...+.. + .. .+...|++++|...++++.+.. +.+..++..++.
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555555443211 1111111 1 22 3677889999999999998875 557888999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRA 521 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 521 (605)
.+...|++++|+..+++++... +.+...+..++.++...|++++|++.++++.+ ..| +...+..+..++...
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-----PDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998763 45678888999999999999999999999987 344 466888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCc-----------cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 522 KRMLDVMMLLADMIKMGIVP-----------DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
|++++|...++++++..... +..++..++.++.+.|++++|...++++.+..|+..
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 99999999999998643221 477889999999999999999999887776655443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=3.3e-18 Score=159.73 Aligned_cols=284 Identities=16% Similarity=0.127 Sum_probs=114.0
Q ss_pred HhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHH
Q 036303 63 SEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLF 142 (605)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 142 (605)
-+.|++++|.++++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..+
T Consensus 14 ~~~~~ld~A~~fae~~~~---~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 356778888888887733 247888888888888888888888542 46667777788888888888888877
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 036303 143 DEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQP 222 (605)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 222 (605)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 766654 3456677778888888888887776664 256668888888888888888888888755
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036303 223 NVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIK 302 (605)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (605)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHH
Confidence 36777888888888888888888777 26677888888888888888885544432 223333445777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCc------CHHHHHHHHHHHH
Q 036303 303 GLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK-GVEP------NVVTFSSLIDGQC 375 (605)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~ 375 (605)
.|.+.|.+++|..+++...... +.-...|+.+.-+|++- ++++..+.++...+. +++| +...|..+...|.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777654 44556666666666554 334443333333222 2222 3456777777788
Q ss_pred hcCCHHHHHHH
Q 036303 376 KAGNIDAAMGL 386 (605)
Q Consensus 376 ~~~~~~~a~~~ 386 (605)
..++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 88888877653
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=4.2e-17 Score=162.61 Aligned_cols=393 Identities=11% Similarity=-0.044 Sum_probs=237.7
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-----------VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCG-- 114 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 114 (605)
.+....+|+.++..+...|++++|++.|++.. .+....+|+.++.+|...|++++|...++++....
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 33455678889999999999999999987651 23345678888999999999999998888776431
Q ss_pred ---C--CCCHHhHHHHHHHHHc--cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC
Q 036303 115 ---L--VADVVTYGVLIDCCCG--QGDVMKALNLFDEMIDKGIEPTVVIYTILIHG---LCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 115 ---~--~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 184 (605)
. .....++.....++.. .+++++|+..|++.++.. |-++..+..+..+ +...++.++|++.+++..+.+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0 1134556665555544 456889999999888774 2245555555544 344677788888888887764
Q ss_pred CCCCcccHHHHHHHHh----ccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 185 VVPNLYTYNALMDGYC----KVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIF 260 (605)
Q Consensus 185 ~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 260 (605)
+. +..++..+...+. ..+++++|.+.+++..... +.+..++..++..+...|++++|...++++.+.. |.+..
T Consensus 206 p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 PD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp SS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred Cc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 33 4555555554443 3467788888888887753 4566778888888888999999999888887754 34555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036303 261 VYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYC 340 (605)
Q Consensus 261 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (605)
++..+..+|...+... .... ... ........+.++.|...+++....+ +.+..++..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~~---------~~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQV---------MNLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------hhHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 6666665553321111 0000 000 0011111234677888888877654 334556777888888
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036303 341 KEGDMEKALSVCSQMTEKGVEPNVV--TFSSLID-GQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKE 417 (605)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (605)
..|++++|...|+++.+....+... .+..+.. .....|+.++|+..|.+.+.. .|+...... ....
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHH
Confidence 8899999999998888764433221 2222332 234678899999999888876 343322221 2234
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH
Q 036303 418 TLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY 476 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (605)
+..++++.+..+ +.+..++..++.++...|++++|++.|+++++..+ ..|+..+|
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~---~~p~a~~~ 469 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS---LIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCCcHhhc
Confidence 455666666655 66778899999999999999999999999887643 24444443
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=3.9e-18 Score=163.81 Aligned_cols=262 Identities=11% Similarity=-0.017 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036303 262 YNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK 341 (605)
Q Consensus 262 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (605)
+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|+..|+++.+.. +.+..++..++..|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444444445555555544444432 2334444455555555555555555555554432 2234455555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCC---------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh
Q 036303 342 EGDMEKALSVCSQMTEKGVE---------PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-PDVVVFTALIDGLSK 411 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 411 (605)
.|++++|...++++.+..+. .....+..+...+...|++++|...++++...... ++..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555555443110 01223334567777888888888888888876322 156778888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHH
Q 036303 412 DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILK 491 (605)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (605)
.|++++|...++++++.. +.+..++..++.++...|++++|+..|++++... +.+..++..++.+|...|++++
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-----PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHCCCHHH
Confidence 888888888888888765 5567788888888888999999999998888763 4457788888888889999999
Q ss_pred HHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 492 ASKLFSDMRSDNLRP-------------DNCTYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 492 A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
|...|+++.+. .| +...|..+..++...|+.+.+.....+
T Consensus 300 A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999888762 22 256788899999999999888776554
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.1e-17 Score=153.64 Aligned_cols=246 Identities=11% Similarity=0.060 Sum_probs=106.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036303 270 CKAGNLFEAMSLCSEMEKFEISPDV--FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEK 347 (605)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 347 (605)
...|++..|+..++...... |+. .....+..+|...|+++.|+..++. . -+|+..++..+...+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 34555555555554443321 221 2223344455555555555543322 1 12334444445555555555555
Q ss_pred HHHHHHHHhhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 348 ALSVCSQMTEKGV-EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEML 426 (605)
Q Consensus 348 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 426 (605)
|++.++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+...|++++|...++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555544332 22333444444555555555555555443 2344444444455555555555555555554
Q ss_pred HCCCCCCHH-HH--HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 036303 427 EAKITPSVF-TV--SSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 427 ~~~~~~~~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
+.. |+.. .. ...+..+...|++++|+.+|++++... +.+...++.++.++...|++++|+..++++++
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-----p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-- 228 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-----SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD-- 228 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 432 2211 10 111122222344444444444444432 23344444444444444444444444444444
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 036303 504 LRP-DNCTYTTMLRGLLRAKRMLD-VMMLLADMIK 536 (605)
Q Consensus 504 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 536 (605)
..| ++.++..++..+...|+.++ +.++++++++
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 222 22344444444444444433 2344444443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.5e-18 Score=160.57 Aligned_cols=282 Identities=13% Similarity=0.117 Sum_probs=109.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 96 KKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAES 175 (605)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (605)
+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567788888888776 23457888888888888888888888552 366677778888888888888888
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 176 MFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGV 255 (605)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (605)
.++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..++..++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77666653 3356667778888888888887777663 356667888888888888888888888765
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSL 335 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 335 (605)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|...|+++.|......+ ...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 35777788888888888888888777 25677788888888888888885444332 2233334467
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------CHhhHHHHHHH
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK-SLVP------DVVVFTALIDG 408 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 408 (605)
+..|.+.|.+++|..+++...... +-....|+.+..+|++- ++++..+.++....+ +++| +...|..+...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 777778888888888887777654 33556666666666553 233333333322222 2222 34456666666
Q ss_pred HHhcCCHHHHHH
Q 036303 409 LSKDGNMKETLR 420 (605)
Q Consensus 409 ~~~~g~~~~a~~ 420 (605)
|...++++.|..
T Consensus 292 y~~~~e~d~A~~ 303 (449)
T 1b89_A 292 YDKYEEYDNAII 303 (449)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhhchHHHHHH
Confidence 677777776655
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=3.1e-17 Score=150.65 Aligned_cols=256 Identities=13% Similarity=0.051 Sum_probs=141.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAA 383 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 383 (605)
....|++..|+..++................+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666655543321111112334455666666666666654432 1 234555556666666666666666
Q ss_pred HHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 384 MGLYTEMVIKSLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 384 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
++.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.++++..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666554323 344445555566666666666666655 34555666666666666666666666666665
Q ss_pred ccCCCCCCccHH-H--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 463 KTDGGYCSPNHV-L--YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGI 539 (605)
Q Consensus 463 ~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 539 (605)
.. |+.. . ...++..+...|++++|..+|+++.+. .+.+...+..+..++.+.|++++|...++++++ .
T Consensus 159 ~~------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~ 229 (291)
T 3mkr_A 159 QD------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--K 229 (291)
T ss_dssp HC------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred hC------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 42 2211 1 112223333446666666666666653 223444566666666666666666666666665 2
Q ss_pred Cc-cHHHHHHHHHHHHhcCChhH-HHHHHHHHHhcCCCCCC
Q 036303 540 VP-DAVINQVMVRGYQENGDLKS-AFRCSEFLKESRIGSSE 578 (605)
Q Consensus 540 ~~-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~ 578 (605)
.| ++.++..++.++...|+.++ +.++++++.+.+|+++.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 33 46666666666666666654 34566666666666543
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=3.3e-17 Score=154.72 Aligned_cols=273 Identities=9% Similarity=-0.023 Sum_probs=125.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
.+..++..+...|++++|+.+|+++ ..+.+..++..++.++...|++++|...|+++.... +.+..++..+..++..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3445555555555555555555544 123344444455555555555555555555554442 2234444444444444
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH-HH-HHhccCChHHHH
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNAL-MD-GYCKVADVNRAL 209 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~-~~~~~~~~~~a~ 209 (605)
.|++++|...++++.+.... +...+..+... .|+......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 55555555555444443211 11111111000 0000000111 11 244555666666
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE 289 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 289 (605)
+.++++.... +.+...+..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6666655542 2344555555555556666666666665555432 2334455555555555555666655555554432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 290 ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILA-----------NVVTYNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
+.+..++..+...+...|++++|...++++....... +...+..+..++...|++++|..+++
T Consensus 237 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 237 -PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2234445555555555555555555555554432110 23444455555555555555555444
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=7.7e-17 Score=158.21 Aligned_cols=347 Identities=12% Similarity=-0.041 Sum_probs=208.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 036303 57 TLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKF---DSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQG 133 (605)
Q Consensus 57 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (605)
.++..+.+.|++++|+.+|+++....+..++..+...+...|+. ++|...|++.... ++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 36667778888888888888774334555666677777777777 7888888887754 5556666666454544
Q ss_pred -----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 036303 134 -----DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVE---AESMFRSMRECGVVPNLYTYNALMDGYCKVADV 205 (605)
Q Consensus 134 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 205 (605)
++++|+..|++..+.|. ...+..|...|...+..++ +.+.+......| +...+..+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 67788888888887652 2366667777776554333 444444444433 455666777777777765
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CCHHHH
Q 036303 206 NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVG---ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA----GNLFEA 278 (605)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a 278 (605)
+++.+....+.+.-...++..+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 555544333332212234447777777887788 7888888888887776 34444445566666544 678888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHH
Q 036303 279 MSLCSEMEKFEISPDVFTYNILIKG-L--CGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG-----DMEKALS 350 (605)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~ 350 (605)
+..|+... +-+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..
T Consensus 237 ~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 88888876 2345555556555 3 45678888888888877765 6666777776666 44 7888888
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHH
Q 036303 351 VCSQMTEKGVEPNVVTFSSLIDGQCK----AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK----DGNMKETLRLY 422 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 422 (605)
.|++.. . -+...+..+...|.. ..++++|...|++....| +......+...|.. ..+..+|...|
T Consensus 309 ~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 309 HFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 887776 3 255666666666665 337788888888777665 33445556665553 34777788888
Q ss_pred HHHHHCC
Q 036303 423 KEMLEAK 429 (605)
Q Consensus 423 ~~~~~~~ 429 (605)
+...+.|
T Consensus 382 ~~A~~~g 388 (452)
T 3e4b_A 382 QLAKAQD 388 (452)
T ss_dssp HHHHTTC
T ss_pred HHHHHCC
Confidence 7777765
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.2e-16 Score=140.16 Aligned_cols=199 Identities=14% Similarity=0.057 Sum_probs=148.5
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036303 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSL 440 (605)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (605)
+++...+..+...+...|++++|+..|++++... +.+...+..+...+...|++++|...+++.++.+ |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455666777777777778888877777777663 3356677777777777888888888888877765 5566777777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 036303 441 IHGLFKN-----------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC 509 (605)
Q Consensus 441 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (605)
+.++... |++++|+..|++++... +.+...+..+..++...|++++|+..|+++++.. .+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-----PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 7777777 99999999999998864 4567888899999999999999999999999865 6778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLK 570 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 570 (605)
.+..+..++...|++++|+..++++++ ..| +..++..++.++.+.|++++|...++++-
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999999999999997 345 68889999999999999999999888763
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=4.7e-16 Score=152.66 Aligned_cols=223 Identities=12% Similarity=0.011 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHH
Q 036303 331 TYNSLIDGYCKEG---DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA----GNIDAAMGLYTEMVIKSLVPDVVVFT 403 (605)
Q Consensus 331 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 403 (605)
.+..+...|...| +.++|+..|++..+.|. ++...+..+...|... +++++|+..|++.. . -++..+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4444444444444 44555555555554432 2333333344444332 45555555555554 2 2333444
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 404 ALIDG-L--SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG-----RISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 404 ~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
.+... + ...+++++|...|++..+.| +......++..|. .| ++++|+..|++.. . .++..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g~~~A 320 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------REVAA 320 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------TCHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------CCHHH
Confidence 44444 2 34556666666666655543 4445555555554 33 6666666666554 1 23344
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHH
Q 036303 476 YAAIIQALCY----DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRMLDVMMLLADMIKMGIVPDAVINQ 547 (605)
Q Consensus 476 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (605)
+..+...|.. ..++++|..+|+++.+.|. ......|...|.. ..++.+|...++++.+.|. ++.....
T Consensus 321 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l 396 (452)
T 3e4b_A 321 DYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLA 396 (452)
T ss_dssp HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHH
Confidence 4455555544 3466666666666665432 2233344444442 3466666666666665552 2222222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
..+......++..+|....++-++..+
T Consensus 397 ~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 397 TQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 222223334455566666655555443
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=4.4e-16 Score=142.65 Aligned_cols=240 Identities=14% Similarity=0.096 Sum_probs=189.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHH
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPD--VVVFTALIDG 408 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 408 (605)
.+......+...|++++|...++++.+..+ .+...+..+..++...|++++|+..++++...+..++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 345566677888888888888888887643 3455777788888888899999988888887431121 2347788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
+...|++++|...+++..+.. +.+..++..++.++...|++++|+..+++++... +.+...+..++..+...++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-----TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-----CCcHHHHHHHHHHHHHHHH
Confidence 999999999999999998865 5567789999999999999999999999998863 4567777777734445569
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCcc------HHHHHHHHHHHHhcC
Q 036303 489 ILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKR---MLDVMMLLADMIKMG-IVPD------AVINQVMVRGYQENG 557 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g 557 (605)
+++|++.++++.+ ..|+ ...+..+..++...|+ +++|...++++++.. -.|+ ..++..++.+|...|
T Consensus 158 ~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 158 YVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 9999999999998 4555 5577788888888888 888999999988632 1133 367888999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCC
Q 036303 558 DLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 558 ~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++++|...++++.+.+|++...
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHhcCccHHHH
Confidence 9999999999999999987644
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.8e-16 Score=141.77 Aligned_cols=227 Identities=11% Similarity=0.079 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HhhHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV--PD----VVVFT 403 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 403 (605)
..+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...+.++...... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666654 45566666666666777777777766666654211 11 45667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHH
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQAL 483 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (605)
.+...+...|++++|...++++.+.. |+. ..+...|++++|+..+++..... +.+...+..++.++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-----PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-----cchHHHHHHHHHHH
Confidence 77777778888888888888777753 342 34556677888888888887752 34566778888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHH
Q 036303 484 CYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++++.. +.+..++..++.+|.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88899999999998888732 2346678888888888999999999999888743 225888888999999999999999
Q ss_pred HHHHHHHhcCC
Q 036303 564 RCSEFLKESRI 574 (605)
Q Consensus 564 ~~~~~~~~~~~ 574 (605)
..++++.+.+|
T Consensus 228 ~~~~~a~~~~~ 238 (258)
T 3uq3_A 228 ETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCh
Confidence 99999988873
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1e-15 Score=138.87 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=151.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cC----HHHHHH
Q 036303 296 TYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVE--PN----VVTFSS 369 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 369 (605)
.+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|...++++.+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555556666666666666666666554 45556666666666666666666666666553211 11 456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 370 LIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGR 449 (605)
Q Consensus 370 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (605)
+..++...|++++|...++++... .|+. ..+...|++++|...++++.... +.+...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777665 2332 23455567778888888777754 4455667777788888888
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVM 528 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 528 (605)
+++|+..+++++... +.+...+..++.++...|++++|++.++++.+ ..|+ ...+..+..++...|++++|.
T Consensus 155 ~~~A~~~~~~a~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-----PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888888888887753 44567777888888888888888888888877 3344 557778888888888888888
Q ss_pred HHHHHHHH
Q 036303 529 MLLADMIK 536 (605)
Q Consensus 529 ~~~~~~~~ 536 (605)
..++++++
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888876
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=3.3e-14 Score=130.03 Aligned_cols=227 Identities=11% Similarity=-0.035 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 036303 328 NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK----AGNIDAAMGLYTEMVIKSLVPDVVVFT 403 (605)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 403 (605)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++....+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566677777777788888888888877773 245667777777777 888888888888887764 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 404 ALIDGLSK----DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK----NGRISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 404 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
.+...|.. .+++++|...|++..+.+ +...+..++..+.. .+++++|+..|++..+. .+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a 148 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDG 148 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHH
Confidence 78888887 888888888888888764 67778888888888 88999999999888873 24566
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHH
Q 036303 476 YAAIIQALCY----DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRMLDVMMLLADMIKMGIVPDAVINQ 547 (605)
Q Consensus 476 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (605)
+..+...|.. .+++++|+..++++.+.+ +...+..+...|.. .+++++|+..++++++.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 7777788877 889999999999988743 45677788888888 899999999999998854 377888
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhcCCCC
Q 036303 548 VMVRGYQE----NGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 548 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 576 (605)
.++.+|.. .|++++|..+++++.+.+|++
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 89999999 999999999999999988764
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=9.5e-16 Score=134.49 Aligned_cols=196 Identities=15% Similarity=0.059 Sum_probs=121.9
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLID 127 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 127 (605)
.++..+..++..+.+.|++++|+..|+++ ..|.+..++..+..++.+.|++++|+..|++..+..+ .+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 45566777777777777888777777766 3556677777777777777777777777777777643 25667777777
Q ss_pred HHHcc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 036303 128 CCCGQ-----------GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM 196 (605)
Q Consensus 128 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 196 (605)
++... |++++|+..+++.++.. |.+...+..+..++...|++++|+..|++..+.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 77777777777666653 2245566666666667777777777776666655 3556666666
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 197 DGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHM 250 (605)
Q Consensus 197 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (605)
.++...|++++|+..|++.++.. +.+...+..+...+...|++++|...++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666666542 334555556666666666666666665554
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=2.4e-15 Score=142.70 Aligned_cols=240 Identities=13% Similarity=0.088 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN-IDAAMGLYTEMVIKSLVPDVVVFTALID 407 (605)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 407 (605)
...|..+...+...|++++|+..+++++...+ .+...|..+..++...|+ +++|+..|++++... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34567777788888889999999998888743 367788888888888896 999999999988874 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc-c
Q 036303 408 GLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY-D 486 (605)
Q Consensus 408 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 486 (605)
++...|++++|+..|+++++.+ +.+..+|..++.++...|++++|+..|++++... +.+..+|+.+..++.. .
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-----P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-----VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876 6678899999999999999999999999999874 5568889999999888 6
Q ss_pred CCHHHH-----HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcC
Q 036303 487 GQILKA-----SKLFSDMRSDNLRPD-NCTYTTMLRGLLRAK--RMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENG 557 (605)
Q Consensus 487 g~~~~A-----~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 557 (605)
|..++| +..++++++ +.|+ ...|..+..++...| ++++|++.+.++ + ..| +..++..++++|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHh
Confidence 665777 588999988 5665 458888888888877 689999999887 3 445 6888999999999875
Q ss_pred --------C-hhHHHHHHHHH-HhcCCCCCCCCc
Q 036303 558 --------D-LKSAFRCSEFL-KESRIGSSETEG 581 (605)
Q Consensus 558 --------~-~~~A~~~~~~~-~~~~~~~~~~~~ 581 (605)
+ +++|+.+++++ .+.+|.......
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~ 357 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDTIRKEYWR 357 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 3 58999999999 898886554433
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=8.5e-15 Score=134.02 Aligned_cols=243 Identities=10% Similarity=0.018 Sum_probs=110.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCC
Q 036303 302 KGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP--NVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 379 (605)
..+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+....+ ....+..+...+...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 334444444444444444443321 122233344444444444444444444444321000 11224444444444555
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLE 459 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (605)
+++|+..++++.... +.+...+..+...+...|++++|...+++.++.. +.+..++..++..+...+++++|++.|++
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444432 1233444455555555555555555555555442 33444444444222233355555555555
Q ss_pred hhhccCCCCCCccHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 036303 460 KTDKTDGGYCSPNHVLYAAIIQALCYDGQ---ILKASKLFSDMRSDN-LRPD------NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
+++.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++|..
T Consensus 168 a~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 168 VLELK-----PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHS-----TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-----ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55542 2234444455555555554 555555555555410 1122 1345556666666666666666
Q ss_pred HHHHHHHCCCCc-cHHHHHHHHHHHH
Q 036303 530 LLADMIKMGIVP-DAVINQVMVRGYQ 554 (605)
Q Consensus 530 ~~~~~~~~~~~~-~~~~~~~l~~~~~ 554 (605)
.++++++ +.| +..++..+.....
T Consensus 243 ~~~~al~--~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 243 AWKNILA--LDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHH--HCTTCHHHHHHHC----
T ss_pred HHHHHHh--cCccHHHHHHHhhhhhc
Confidence 6666665 334 4555555544433
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=1.7e-14 Score=130.32 Aligned_cols=207 Identities=14% Similarity=0.048 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG 443 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (605)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777788888888888888888887763 3466778888888889999999999999888765 5577888888999
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAK 522 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 522 (605)
+...|++++|+++++++.... ..+.+...+..++.++...|++++|.+.++++.+. .| +...+..++..+...|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDT---LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCT---TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHhCc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcC
Confidence 999999999999999988711 12446777888899999999999999999999873 34 4668888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
++++|...++++++.. +.+...+..++.++...|++++|.+.++++.+.+|++..
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999998732 336788889999999999999999999999999887653
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=1.8e-12 Score=131.27 Aligned_cols=148 Identities=11% Similarity=0.154 Sum_probs=104.7
Q ss_pred HHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC---hhHHHHHHH
Q 036303 69 EEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGD---VMKALNLFD 143 (605)
Q Consensus 69 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~ 143 (605)
.+-+..|+.. .++.+...|..++..+.+.+.++.+..+|++++.. .+.....|...+..-.+.|+ ++.+..+|+
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444444443 46678899999999999999999999999999887 55577888888888888888 999999999
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-cccHHHHHHHHhc---------c
Q 036303 144 EMIDKG-IEPTVVIYTILIHGLCNENKM--------VEAESMFRSMRE-CGV-VPN-LYTYNALMDGYCK---------V 202 (605)
Q Consensus 144 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~p~-~~~~~~l~~~~~~---------~ 202 (605)
+.+... .+|++..|...+....+.++. +.+.++|+..+. .|. .|+ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998873 137888888887766665543 334477776554 355 443 3567776665432 2
Q ss_pred CChHHHHHHHHHHHh
Q 036303 203 ADVNRALEFYHEMLH 217 (605)
Q Consensus 203 ~~~~~a~~~~~~~~~ 217 (605)
++++.+..+|++.+.
T Consensus 208 ~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 346677788888775
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=1.5e-12 Score=131.91 Aligned_cols=456 Identities=9% Similarity=0.056 Sum_probs=287.3
Q ss_pred CcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC---hhHHHH
Q 036303 31 PHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGK---FDSVWE 105 (605)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 105 (605)
+.+....+-+.+.. .|.+...|..++..+.+.+.++.+..+|+++ ..|.....|...+..-.+.++ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~---np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE---QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 33333344444444 5679999999999999999999999999988 366778899999999899999 999999
Q ss_pred HHHHHHHCCC-CCCHHhHHHHHHHHHccCCh--------hHHHHHHHHHHhC-CC-CC-CHHHHHHHHHHHHh-------
Q 036303 106 FYEEMVLCGL-VADVVTYGVLIDCCCGQGDV--------MKALNLFDEMIDK-GI-EP-TVVIYTILIHGLCN------- 166 (605)
Q Consensus 106 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~~------- 166 (605)
+|++.+...+ +|++..|...+....+.++. +...++|+..+.. |. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999998731 37888999888877766554 3455788876653 55 44 45688888876542
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 036303 167 --ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAG 244 (605)
Q Consensus 167 --~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (605)
.++++.+..+|+..+.. |... +..+-..| ...... + +..+...++.- ...+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~i---P~~~-~~~~w~~Y-------------~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ---PMDC-LESMWQRY-------------TQWEQD-V--NQLTARRHIGE--LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS---CCSS-HHHHHHHH-------------HHHHHH-H--CTTTHHHHHHH--HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC---ccHH-HHHHHHHH-------------HHHHHh-c--CcchHHHHHHH--hhHHHHHHH
Confidence 34577889999998863 3221 11111111 111110 0 00111111111 112333344
Q ss_pred HHHHHHHH--CCC----CCC-------------------HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCC
Q 036303 245 NFFVHMAK--FGV----FPN-------------------IFVYNCLIDGHCKAG-------NLFEAMSLCSEMEKFEISP 292 (605)
Q Consensus 245 ~~~~~~~~--~~~----~~~-------------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~ 292 (605)
..+.++.. .++ +.. ...|...+..-...+ ....+..+|++.... .+-
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCC
Confidence 44433221 011 000 123333333222221 123455677777664 245
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------Cc
Q 036303 293 DVFTYNILIKGLCGVGQLEGAE-GLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV---------EP 362 (605)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 362 (605)
....|...+..+...|+.++|. .++++.... .+.+...|...+....+.|+++.|..+|+++..... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 6677777777778888888886 888888765 344666677777778888889999988888876310 12
Q ss_pred ------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCC
Q 036303 363 ------------NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKD-GNMKETLRLYKEMLEAK 429 (605)
Q Consensus 363 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 429 (605)
....|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 12356677777777788888888888887751122233444333333333 4578888888888875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 036303 430 ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC 509 (605)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (605)
.+.+...+...+......|+.+.|..+|+.++..... .......|...+..-...|+.+.+.++.+++.+ ..|+..
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~--~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~ 575 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD--SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVN 575 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS--TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCC
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCc
Confidence 3556666777777777788888888888888875310 012456677777777788888888888888887 445554
Q ss_pred HHHHHHHHH
Q 036303 510 TYTTMLRGL 518 (605)
Q Consensus 510 ~~~~l~~~~ 518 (605)
....+++-|
T Consensus 576 ~~~~f~~ry 584 (679)
T 4e6h_A 576 KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 444444444
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=4.2e-15 Score=133.50 Aligned_cols=208 Identities=12% Similarity=0.040 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
....+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34556666777777788888888888777653 3356677777788888888888888888887764 456777888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (605)
.+...|++++|++.++++.... +.+...+..++.++...|++++|+..++++.+.. +.+...+..++..+...|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-----MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-----CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC
Confidence 8888888888888888888763 4566778888888889999999999999888732 235667888888899999
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++++|...++++++.. +.+..++..++.+|...|++++|...++++.+.+|++...
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 9999999999988742 2357888899999999999999999999999988876543
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=3.5e-14 Score=125.70 Aligned_cols=209 Identities=11% Similarity=-0.009 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+...+..++..+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566777777778888888888887777653 3356677777788888888888888888887764 456777888888
Q ss_pred HHHhc-CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 036303 443 GLFKN-GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLR 520 (605)
Q Consensus 443 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 520 (605)
.+... |++++|+..+++++... ..+.+...+..++.++...|++++|+..++++.+ ..| +...+..++.++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADP---TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTST---TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCc---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHH
Confidence 88888 88888888888887711 1234467778888888889999999999988887 334 46678888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 521 AKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.|++++|...++++++.....+...+..++..+...|+.++|..+++.+.+.+|++..
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999998886432135777778888888999999999999998888877553
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=2.4e-14 Score=135.84 Aligned_cols=248 Identities=9% Similarity=-0.018 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 036303 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD-MEKALSVCSQMTEKGVEPNVVTFSSLIDG 373 (605)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (605)
..|..+...+...|++++|+..+++++... +-+...|..+..++...|+ +++|+..++++++..+ .+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 456666677777788888888888877764 3366777777777888885 8888888888877643 367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 036303 374 QCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK-NGRISN 452 (605)
Q Consensus 374 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 452 (605)
+...|++++|+..|++++... +-+...|..+..++...|++++|+..++++++.+ +.+..+|..++.++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888888764 3366777888888888888888888888888876 5577788888888887 555577
Q ss_pred H-----HHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--
Q 036303 453 A-----LNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG--QILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAK-- 522 (605)
Q Consensus 453 A-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-- 522 (605)
| +..|++++... +.+...|..+..++...| ++++|++.++++ + ..| +...+..++.+|...|
T Consensus 254 A~~~~el~~~~~Al~l~-----P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-----PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcc
Confidence 7 47788887753 455778888888888877 578888888887 3 344 4557788888887764
Q ss_pred -------CHHHHHHHHHHH-HHCCCCc-cHHHHHHHHHHHHhc
Q 036303 523 -------RMLDVMMLLADM-IKMGIVP-DAVINQVMVRGYQEN 556 (605)
Q Consensus 523 -------~~~~A~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~~ 556 (605)
.+++|+++++++ ++ +.| ....|..++..+...
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHH
Confidence 258899999888 65 556 466777776655543
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=7.7e-14 Score=127.59 Aligned_cols=224 Identities=13% Similarity=-0.003 Sum_probs=142.0
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK----KGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.++.++..++..+...|++++|+..|++...+.+..++..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35666777777777777777777777766445556677777777777 777777777777777664 56667777
Q ss_pred HHHHHc----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 036303 126 IDCCCG----QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN----ENKMVEAESMFRSMRECGVVPNLYTYNALMD 197 (605)
Q Consensus 126 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 197 (605)
..++.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..++..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777777 777777777777777653 55666667777776 677777777777766653 3445555555
Q ss_pred HHhc----cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 198 GYCK----VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCK----VGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGH 269 (605)
Q Consensus 198 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (605)
.+.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 6655 666666666666665542 33445555555555 556666666665555543 134444455555
Q ss_pred Hh----cCCHHHHHHHHHHHHhC
Q 036303 270 CK----AGNLFEAMSLCSEMEKF 288 (605)
Q Consensus 270 ~~----~~~~~~a~~~~~~~~~~ 288 (605)
.. .+++++|...|++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 55 55555555555555443
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=7.5e-15 Score=134.65 Aligned_cols=245 Identities=12% Similarity=-0.100 Sum_probs=139.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 036303 306 GVGQLEGAEGLLQKMYKEGIL---ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDA 382 (605)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 382 (605)
..|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+.. +.+...+..++.++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 446677777777777665221 124456666667777777777777777776653 2356666667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 383 AMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 383 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
|...++++.... +.+...+..+...+...|++++|...++++.+.. |+..........+...|++++|+..+.+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777766653 2245566666666777777777777777766643 2222222223333455667777777666655
Q ss_pred ccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 463 KTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-----NCTYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
.. +++...+ .++..+...++.++|.+.++++.+ ..|+ ...+..++.++...|++++|...++++++.
T Consensus 173 ~~-----~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-----DKEQWGW-NIVEFYLGNISEQTLMERLKADAT--DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-----CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-----CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc--ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 43 2222222 244555556666666666666654 2221 345566666666666666666666666652
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 036303 538 GIVPDAVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 538 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
.|+. +...+.++...|++++|+..+
T Consensus 245 --~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred --Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 3321 122244556666666666554
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=1.1e-14 Score=124.37 Aligned_cols=169 Identities=15% Similarity=0.080 Sum_probs=146.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHH
Q 036303 398 DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYA 477 (605)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (605)
+...|..+...|...|++++|+..|++.++.+ |.+..++..++.++.+.|++++|+..+....... +.+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-----TTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----chhHHHHH
Confidence 56778888999999999999999999998876 5678888999999999999999999999988764 45577778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
.+...+...++++.|...++++.+ ..| +...+..+..++...|++++|++.++++++ +.| +..++..++.+|.+
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHH
Confidence 888888999999999999999887 445 455888889999999999999999999997 445 68899999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCC
Q 036303 556 NGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~ 576 (605)
.|++++|+..++++.+.+|++
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999998864
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=4.8e-15 Score=144.79 Aligned_cols=210 Identities=10% Similarity=0.030 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHhhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIK----S-LVPDVVVFTALIDGLSKDGN-----------------MKETLRLYK 423 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~ 423 (605)
.+..+...|...|++++|...+.++... + .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3444445555555555555555544432 0 01122345555666666666 666666666
Q ss_pred HHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHHHHHHHHHccCCHHHHHHHHH
Q 036303 424 EMLEA----KI-TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYAAIIQALCYDGQILKASKLFS 497 (605)
Q Consensus 424 ~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (605)
+.++. +. +....++..++..+...|++++|+..+++.+......+. ......+..++.++...|++++|+..++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65432 11 112346777788888889999999988888764321100 0112367788889999999999999999
Q ss_pred HHHhCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 498 DMRSDN--LR---PDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 498 ~~~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
++.+.. .. ....++..+...+...|++++|...++++++. +..+ ...++..++.+|.+.|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 887621 10 01457788888999999999999999998752 1111 25688899999999999999999999
Q ss_pred HHHhcCCC
Q 036303 568 FLKESRIG 575 (605)
Q Consensus 568 ~~~~~~~~ 575 (605)
++.+..+.
T Consensus 368 ~al~~~~~ 375 (411)
T 4a1s_A 368 QHLQLAXX 375 (411)
T ss_dssp HHHHHCCH
T ss_pred HHHHHHhh
Confidence 99887654
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.8e-14 Score=132.10 Aligned_cols=249 Identities=9% Similarity=-0.086 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 272 AGNLFEAMSLCSEMEKFEI---SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKA 348 (605)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (605)
.|++++|+..++++.+... +.+..++..+...+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4555556666655555321 1123445555555555566666666655555543 22455555555555556666666
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 349 LSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA 428 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 428 (605)
...++++.+.. +.+...+..+..++...|++++|...++++... .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66665555542 223455555555555566666666665555544 222222222233334445555666555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 036303 429 KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN 508 (605)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (605)
. +++...+ .++..+...++.++|+..+.+........ .+.+...+..++.++...|++++|...|+++.+ ..|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSL-AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccc-cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 2 2222222 24444445555555555555554431000 000134455555555555666666666655554 33322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLL 531 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~ 531 (605)
. .....++...|++++|++.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 1 12233444455555554443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=9.8e-15 Score=142.31 Aligned_cols=231 Identities=12% Similarity=0.000 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CcCHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEKGV-----EPNVVTFSSLIDGQCKAGN--------------------IDAAMG 385 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~~ 385 (605)
++..+...+...|++++|...++++.+... .....++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444455555555555555554443200 0012345555556666666 666666
Q ss_pred HHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 036303 386 LYTEMVIK----SLV-PDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI-TPS----VFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 386 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
.+.+.... +.. ....++..+...+...|++++|...+++.++... .++ ..++..++..+...|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66655432 111 1233566777778888888888888887765310 111 2367788888899999999999
Q ss_pred HHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036303 456 FFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD-NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
.+++.+......+..+. ..++..++.++...|++++|.+.++++.+. +..+. ..++..+..+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99888764322111111 456778889999999999999999998762 11111 4477888889999999999999
Q ss_pred HHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhH
Q 036303 530 LLADMIKM----GIVP-DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 530 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 561 (605)
.++++++. +..+ ...++..++.++...|+...
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99998752 2222 36778889999999998744
No 57
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=6.9e-16 Score=155.99 Aligned_cols=150 Identities=14% Similarity=0.130 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVL---CGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
..+|+.++.+|++.|+.++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45799999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC------cchHHHHHHH
Q 036303 161 IHGLCNENKM-VEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPN------VVTFGVLMDG 233 (605)
Q Consensus 161 ~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 233 (605)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+ +.+++..+++ ..++.|+ ..+...|...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999984 7899999999999999999999988865544 3455555555 2234443 4455566666
Q ss_pred HHhcC
Q 036303 234 LCKVG 238 (605)
Q Consensus 234 ~~~~~ 238 (605)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66554
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.3e-13 Score=122.78 Aligned_cols=164 Identities=9% Similarity=-0.006 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP-SVFTVSSLIHGL 444 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 444 (605)
.+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.+..| +...+..++.++
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence 33333333333444444444443333321 1123333334444444444444444444444311111 233344444444
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (605)
...|++++|+..+++++... +.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLN-----RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH
Confidence 44445555555444444432 2234444445555555555555555555554421 12233444444455555555
Q ss_pred HHHHHHHHHHHH
Q 036303 525 LDVMMLLADMIK 536 (605)
Q Consensus 525 ~~A~~~~~~~~~ 536 (605)
++|.+.++++++
T Consensus 226 ~~A~~~~~~~~~ 237 (252)
T 2ho1_A 226 DTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=2.3e-14 Score=128.68 Aligned_cols=213 Identities=12% Similarity=0.095 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 036303 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDG 408 (605)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (605)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445556666667777777777777776653 3356666777777777777777777777776653 3356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
+...|++++|...++++.+.. +.+...+..++..+...|++++|+..+++++... +.+...+..++.++...|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-----ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHcCC
Confidence 777788888888887777654 4566677777777888888888888888877653 4456677777888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
+++|++.++++.+.. +.+..++..+..++...|++++|...++++++. .| +..++..+...
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAKKLL 236 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHHHHH
Confidence 888888888877632 234557777888888888888888888888763 34 45555554433
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.6e-14 Score=140.78 Aligned_cols=283 Identities=13% Similarity=0.079 Sum_probs=207.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-
Q 036303 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN----VVTYNSLIDGYCKEGDMEKALSVCSQMTEK----GVEP- 362 (605)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 362 (605)
.....+......+...|++++|...++++.+.+. .+ ...+..+...+...|++++|...++++... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3444555666677777777777777777776532 23 245667777788888888888888776543 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCC--------------------HHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-PD----VVVFTALIDGLSKDGN--------------------MKE 417 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~ 417 (605)
....+..+...+...|++++|...+.++...... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456778889999999999999999988754110 11 3477788888999999 999
Q ss_pred HHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHHHHHHHHHHHHccCCHHH
Q 036303 418 TLRLYKEMLEA----KI-TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHVLYAAIIQALCYDGQILK 491 (605)
Q Consensus 418 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 491 (605)
|...+++.... +. +....++..++..+...|++++|+..+++.+......+..+ ...++..++.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999887653 11 11234678888999999999999999999887533211111 13477888999999999999
Q ss_pred HHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhH
Q 036303 492 ASKLFSDMRSD----NLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 492 A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 561 (605)
|...++++.+. +..+. ..++..+...+...|++++|...++++++. +..+ ...++..++.+|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998762 11111 447788889999999999999999998752 2112 26688899999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 036303 562 AFRCSEFLKESRIG 575 (605)
Q Consensus 562 A~~~~~~~~~~~~~ 575 (605)
|...++++.+..+.
T Consensus 326 A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 326 AMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887543
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=1e-14 Score=138.09 Aligned_cols=210 Identities=13% Similarity=0.041 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCC--------------------HHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-VPD----VVVFTALIDGLSKDGN--------------------MKETLR 420 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 420 (605)
.+..+...+...|++++|...+.+...... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 344455555555555555555555443200 001 2245555556666666 666666
Q ss_pred HHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHHHHHHHHHccCCHHHHHH
Q 036303 421 LYKEMLEA----K-ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYAAIIQALCYDGQILKASK 494 (605)
Q Consensus 421 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 494 (605)
.+++.... + .+....++..++..+...|++++|+..+++........+. .....++..++.++...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66665432 1 1112346777788888899999999999887764321111 1113367788889999999999999
Q ss_pred HHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhHHHH
Q 036303 495 LFSDMRSDNL-RPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 495 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
.++++.+... .++ ..++..+...+...|++++|...++++++. +..+ ...++..++.+|.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9998875210 111 447778888999999999999999998752 1111 25678899999999999999999
Q ss_pred HHHHHHhcCCC
Q 036303 565 CSEFLKESRIG 575 (605)
Q Consensus 565 ~~~~~~~~~~~ 575 (605)
.++++.+..++
T Consensus 325 ~~~~a~~~~~~ 335 (338)
T 3ro2_A 325 FAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=4.1e-13 Score=124.91 Aligned_cols=225 Identities=12% Similarity=0.065 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 346 EKALSVCSQMTEKGVEPNVVTFSSLIDGQC-------KAGNI-------DAAMGLYTEMVIKSLVPDVVVFTALIDGLSK 411 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (605)
++|..+|++++... +.+...|..++..+. ..|++ ++|..+|++.+..-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 346667766666654 34775 8888888888873123355678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH-ccCCH
Q 036303 412 DGNMKETLRLYKEMLEAKITPSVF-TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC-YDGQI 489 (605)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 489 (605)
.|++++|..+|+++++.. +.+.. ++..++..+.+.|++++|+.+|++++... +.+...|...+.... ..|++
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-----RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----TCCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHcCCH
Confidence 899999999999988753 22343 78888888888999999999999988753 233444444333322 36999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCc--cHHHHHHHHHHHHhcCChhHHHHH
Q 036303 490 LKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMG-IVP--DAVINQVMVRGYQENGDLKSAFRC 565 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 565 (605)
++|.++|+++++ ..| +...|..++..+.+.|++++|+.+|+++++.. ++| ...+|..++..+.+.|+.++|..+
T Consensus 186 ~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 186 SVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999987 344 45688888888889999999999999999853 455 367888899999999999999999
Q ss_pred HHHHHhcCCCCCCC
Q 036303 566 SEFLKESRIGSSET 579 (605)
Q Consensus 566 ~~~~~~~~~~~~~~ 579 (605)
++++.+..|++...
T Consensus 264 ~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 264 EKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHHHHTTTTTSS
T ss_pred HHHHHHHccccccc
Confidence 99999999976544
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=4.2e-13 Score=118.68 Aligned_cols=199 Identities=10% Similarity=-0.011 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLS 410 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (605)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444444432 1233444444444445555555555554444432 223344444555555
Q ss_pred hc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 411 KD-GNMKETLRLYKEMLEAKITP-SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 411 ~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
.. |++++|...++++++.+..| +...+..++.++...|++++|+..+++++... +.+...+..++.++...|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-----PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHTC
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHcCC
Confidence 55 55555555555555421111 23444555555555555555555555555432 2334455555555555666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+++|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666665555421102333444444455555666666555555543
No 64
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=6e-16 Score=156.45 Aligned_cols=120 Identities=15% Similarity=0.213 Sum_probs=110.7
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 036303 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMID---KGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA 194 (605)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 194 (605)
...+|+++|.+|++.|++++|.++|+.|.+ .|+.||+.+||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 036303 195 LMDGYCKVADV-NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV 237 (605)
Q Consensus 195 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (605)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999888655443
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=6.5e-14 Score=135.08 Aligned_cols=238 Identities=9% Similarity=-0.036 Sum_probs=178.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHhhHH
Q 036303 335 LIDGYCKEGDMEKALSVCSQMTEK----GVEP-NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-P-----DVVVFT 403 (605)
Q Consensus 335 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 403 (605)
....+...|++++|...++++.+. +-++ ...++..+...|...|+++.|...+.+....... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999888764 1111 3457788888899999999999998887754111 1 234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHH
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKI-TPS----VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYA 477 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ 477 (605)
.+...|...|++++|...+++.++... .++ ..++..++.++...|++++|+..+++++......+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999998875411 111 246888999999999999999999999874322222 33467788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC---CCCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDN---LRPDN-CTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
.++.++...|++++|...++++.+.. -.|.. ..+..+...+...|+ +++|+.++++. +..| ...++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999988621 01222 245667777888888 77777777654 3444 36688899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 550 VRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
+.+|...|++++|...++++.+....
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987554
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=4.7e-14 Score=137.73 Aligned_cols=271 Identities=11% Similarity=0.011 Sum_probs=165.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHH
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPDV----FTYNILIKGLCGVGQLEGAEGLLQKMYKE----G-ILANVVTYNSL 335 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l 335 (605)
+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...+++.... + .+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344444555555555555544432 1111 23444444555555555555555544332 0 01122344555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC----C-CCcCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEK----G-VEPNVVTFSSLIDGQCKAGN-----------------IDAAMGLYTEMVIK 393 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~ 393 (605)
...|...|++++|...++++.+. + .+....++..+...|...|+ +++|...+.+....
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55556666666666666555432 0 11123455566666666677 67777666665432
Q ss_pred ----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 394 ----SL-VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PS----VFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 394 ----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
+. ......+..+...+...|++++|...+++.++.... ++ ..++..++.++...|++++|+..+++++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11 112346667777888888888888888887653210 11 236778888899999999999999888775
Q ss_pred cCCCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 464 TDGGYCS-PNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 464 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
....+.. ....++..+..++...|++++|...++++.+. +..+ ...++..+..+|...|++++|...++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3211111 12466778889999999999999999998762 1111 133778888999999999999999999987
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=3.5e-13 Score=129.97 Aligned_cols=234 Identities=8% Similarity=-0.027 Sum_probs=169.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CcCHHHHH
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGI-LAN----VVTYNSLIDGYCKEGDMEKALSVCSQMTEKG--V----EPNVVTFS 368 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 368 (605)
....+...|++++|...+++....-. .++ ..++..+...|...|+++.|...+.+..+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45566777888888888888776310 122 3467777888888888888888888776531 1 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLV-PD----VVVFTALIDGLSKDGNMKETLRLYKEMLEA----KI-TPSVFTVS 438 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 438 (605)
.+..+|...|++++|...+.+....... ++ ..++..+...|...|++++|...+++.++. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888999999999988887754111 11 236778888999999999999999998872 22 34466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ---ILKASKLFSDMRSDNLRPD-NCTYTTM 514 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 514 (605)
.++.++...|++++|...+++.+......+.+.....+..+...+...|+ .++|+.++++.. ..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 89999999999999999999887743211112223345677888888898 778888887762 3343 3377788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 036303 515 LRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...|...|++++|...++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999875
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=5.9e-14 Score=131.20 Aligned_cols=244 Identities=14% Similarity=0.090 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEK-------GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK------SL- 395 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~- 395 (605)
.++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445555555555555555555555442 11223344555556666666666666666655543 11
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC-
Q 036303 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA------KI-TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG- 467 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 467 (605)
+.....+..+...+...|++++|...++++++. +. +....++..++..+...|++++|+.++++++......
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 123345666666777777777777777776653 11 2234456777778888888888888888776641110
Q ss_pred --CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 036303 468 --YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD-------NLRPDNC-------TYTTMLRGLLRAKRMLDVMMLL 531 (605)
Q Consensus 468 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~ 531 (605)
..+....++..++.++...|++++|.+.++++.+. ...+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 01223456778888888889999999888888752 1222222 1222222333455666666667
Q ss_pred HHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 532 ADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 532 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..... ..| +..++..++.+|.+.|++++|..+++++.++.|.
T Consensus 268 ~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66664 234 5788999999999999999999999999988764
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=1.4e-13 Score=136.04 Aligned_cols=211 Identities=9% Similarity=-0.042 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNI-DAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYK 423 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (605)
++++...++...... +.+...+..+...+...|++ ++|+..|++++... +.+...+..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555544432 33566666667777777777 77777777776653 2345667777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc--------
Q 036303 424 EMLEAKITPSVFTVSSLIHGLFKN---------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD-------- 486 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 486 (605)
+.++.. |+...+..++.++... |++++|+..|++++... +.+...|..++.+|...
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-----VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 777653 4566777777777777 88888888888887753 44567777888888777
Q ss_pred CCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhH
Q 036303 487 GQILKASKLFSDMRSDNLRP----DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 561 (605)
|++++|++.|+++.+ +.| +...|..+..+|...|++++|...++++++ +.| +..++..++.++...|++++
T Consensus 235 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 235 KISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887 455 566888888888888888888888888887 345 57788888888888888888
Q ss_pred HHHHHHH
Q 036303 562 AFRCSEF 568 (605)
Q Consensus 562 A~~~~~~ 568 (605)
|...+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 8865543
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=1.1e-12 Score=111.81 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+...|..+...|...|++++|++.|+++++.. +.+...+..+..++...|++++|...+....... +.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45566666666777777777777777666653 2355566666667777777777777777766654 445566666666
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRA 521 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 521 (605)
.+...++++.|...+.+..... +.+...+..++.++...|++++|++.|+++.+ +.| +...|..+..++...
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-----TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHC
Confidence 6777777777777777766653 44566666777777777777777777777776 334 344677777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 036303 522 KRMLDVMMLLADMIK 536 (605)
Q Consensus 522 g~~~~A~~~~~~~~~ 536 (605)
|++++|+..++++++
T Consensus 155 g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 155 GLRDEAVKYFKKALE 169 (184)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777777776
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=1.1e-11 Score=115.12 Aligned_cols=217 Identities=11% Similarity=0.053 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 036303 311 EGAEGLLQKMYKEGILANVVTYNSLIDGYC-------KEGDM-------EKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376 (605)
Q Consensus 311 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (605)
++|...|+++.... +.+...|..++..+. ..|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666543 335566666665554 34664 7788888887773123355677777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-Hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 036303 377 AGNIDAAMGLYTEMVIKSLVPD-VV-VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLF-KNGRISNA 453 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 453 (605)
.|++++|..+|++++.. .|+ .. .|..++..+.+.|++++|..+|++.++.. +++...+...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888765 333 33 67777777777888888888888887764 334444443333322 36888888
Q ss_pred HHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 036303 454 LNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN-LRPD--NCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
+.+|+++++.. +.+...|..++..+...|++++|..+|+++++.. +.|+ ...|..++..+...|+.++|..+
T Consensus 189 ~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 189 FKIFELGLKKY-----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHhC-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888887764 4456777888888888888888888888888742 3443 44777777777788888888888
Q ss_pred HHHHHH
Q 036303 531 LADMIK 536 (605)
Q Consensus 531 ~~~~~~ 536 (605)
++++++
T Consensus 264 ~~~a~~ 269 (308)
T 2ond_A 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888876
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=5e-13 Score=126.42 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=157.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHH
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFEISPD----VFTYNILIKGLCGVGQLEGAEGLLQKMYKE----GIL-ANVVTYNSLID 337 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~ 337 (605)
..+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ....++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 33444444444444444444322 111 123334444444444444444444443321 000 11233444555
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CcC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 036303 338 GYCKEGDMEKALSVCSQMTEKGV-EPN----VVTFSSLIDGQCKAGN--------------------IDAAMGLYTEMVI 392 (605)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 392 (605)
.+...|++++|...++++.+... .++ ..++..+...+...|+ +++|...+.+...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55555555555555555443200 001 2245555556666666 6666666655443
Q ss_pred C----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 393 K----SL-VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAK-----ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 393 ~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
. +. +.....+..+...+...|++++|...+++..+.. ......++..++..+...|++++|...+++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 10 1123356667777888888888888888776431 011123677788888999999999999998876
Q ss_pred ccCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 463 KTDGGYCSP-NHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 463 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.....+..+ ...++..+..++...|++++|...++++.+. +..+ ...++..+..++...|++++|...++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 432111111 1456778888999999999999999998762 1111 133777888999999999999999999987
Q ss_pred C
Q 036303 537 M 537 (605)
Q Consensus 537 ~ 537 (605)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 3
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=1.7e-12 Score=124.80 Aligned_cols=237 Identities=7% Similarity=-0.006 Sum_probs=174.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC--CC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CC-CHhhH
Q 036303 334 SLIDGYCKEGDMEKALSVCSQMTEKG--VE---PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-----VP-DVVVF 402 (605)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 402 (605)
.....+...|++++|...++++.+.. .+ ....++..+..+|...|+++.|...+.+...... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34556678899999999999887651 11 1245677888899999999999999988775311 11 23467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEA----KIT-PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYA 477 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (605)
..+...|...|++++|...+++.++. +.+ ....++..++.++...|++++|+..+++++......+.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78888899999999999999988763 111 1234678889999999999999999999887221111234467788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC---CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDNL---RPDN-CTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
.++.++...|++++|...++++.+... .|.. ..+..+...+...++ +.+|+..+++ .+..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 999999999999999999999987311 2332 245555556667777 7777777765 33334 36677889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 036303 550 VRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
+..|...|++++|...++++.+..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988653
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=8.4e-13 Score=130.37 Aligned_cols=211 Identities=13% Similarity=0.042 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 310 LEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDM-EKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYT 388 (605)
Q Consensus 310 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 388 (605)
++++...++...... +.+...+..+...+...|++ ++|+..|+++.+.. +.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666655543 34677888888888888888 88888888888764 3367788888888999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 036303 389 EMVIKSLVPDVVVFTALIDGLSKD---------GNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN--------GRIS 451 (605)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 451 (605)
+++.. .|+...+..+...+... |++++|...+++.++.. +.+...+..++.++... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88877 46677888888888888 99999999999998875 56788899999999888 9999
Q ss_pred HHHHHHHHhhhccCCCCCC---ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036303 452 NALNFFLEKTDKTDGGYCS---PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 527 (605)
+|+..|++++... + .+...|..++.+|...|++++|++.|+++.+ +.|+ ...+..+..++...|++++|
T Consensus 239 ~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 239 QALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998853 3 4788899999999999999999999999988 4555 44788888889889999888
Q ss_pred HHHHH
Q 036303 528 MMLLA 532 (605)
Q Consensus 528 ~~~~~ 532 (605)
+..+.
T Consensus 312 i~~~~ 316 (474)
T 4abn_A 312 LESKG 316 (474)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 87543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=2e-11 Score=117.27 Aligned_cols=91 Identities=14% Similarity=-0.013 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 036303 266 IDGHCKAGNLFEAMSLCSEMEKFEISPDVF----TYNILIKGLCGVGQLEGAEGLLQKMYKEGI-LANV----VTYNSLI 336 (605)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~ 336 (605)
...+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334455666666666666655432111111 233444445555566666555555443210 0111 1233344
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 036303 337 DGYCKEGDMEKALSVCSQMT 356 (605)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~ 356 (605)
..+...|++++|...+++..
T Consensus 101 ~~~~~~G~~~~A~~~~~~al 120 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAF 120 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555443
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=2.1e-12 Score=114.39 Aligned_cols=201 Identities=10% Similarity=-0.005 Sum_probs=158.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036303 362 PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLI 441 (605)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (605)
.++..+......+...|++++|+..|.+.+....+++...+..+..++...|++++|+..+++.++.+ +.+..++..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888899999999999999999999987643677778788899999999999999999999875 45677889999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCCccH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--H-HHH
Q 036303 442 HGLFKNGRISNALNFFLEKTDKTDGGYCSPNH-------VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--N-CTY 511 (605)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~-~~~ 511 (605)
.++...|++++|+..+++.+... +.+. ..|..+...+...|++++|++.|+++++ ..|+ . ..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 156 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDAL 156 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHH
Confidence 99999999999999999998864 3344 4577888888999999999999999987 5676 3 477
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
..+..++...| ...++++...+ ..+...+... .....|.+++|+..++++.+++|++..
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 77777776544 33455555533 2233334333 345667799999999999999998754
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=7.1e-13 Score=135.94 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=144.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHH
Q 036303 398 DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYA 477 (605)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (605)
+...++.+...+...|++++|+..|++.++.. +.+..++..++.++.+.|++++|+..|+++++.. +.+..+|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----P~~~~a~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----PTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHH
Confidence 45678888888999999999999999988875 5567888899999999999999999999988863 44578889
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
.++.++...|++++|++.|+++++ +.|+ ...|..+..++...|++++|+..++++++ +.| +..++..++.+|..
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHh
Confidence 999999999999999999999988 5565 45888999999999999999999999998 456 58889999999999
Q ss_pred cCChhHHHHHHHHHHhcCCC
Q 036303 556 NGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~ 575 (605)
.|++++|.+.++++.+..|+
T Consensus 158 ~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTCCTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhChh
Confidence 99999999999998887553
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=2e-12 Score=110.28 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHH
Q 036303 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAI 479 (605)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 479 (605)
..+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.... +.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~ 82 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-----PDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHH
Confidence 455666777778888888888888877654 4567778888888888899999999988888763 4567778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCh
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDL 559 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 559 (605)
+..+...|++++|.+.++++.+. .+.+...+..++.++...|++++|...++++++.. +.+..++..++.++...|++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCH
Confidence 88899999999999999998873 23356688888899999999999999999998743 33688999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCC
Q 036303 560 KSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 560 ~~A~~~~~~~~~~~~~~~~~ 579 (605)
++|...++++.+.+|++...
T Consensus 161 ~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 161 EEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHHHcCCCchhh
Confidence 99999999999998876643
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=8.2e-12 Score=120.03 Aligned_cols=233 Identities=9% Similarity=0.008 Sum_probs=168.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCc-CHHHHH
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGI-LAN----VVTYNSLIDGYCKEGDMEKALSVCSQMTEKG-----VEP-NVVTFS 368 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~ 368 (605)
....+...|++++|...++++..... .++ ..++..+...|...|+++.|...++++.+.. ..+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888888765411 122 3456777778888888888888888776531 011 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIK----SLV-PDVVVFTALIDGLSKDGNMKETLRLYKEMLE-----AKITPSVFTVS 438 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 438 (605)
.+..+|...|++++|...+.+.... +.. ....++..+..+|...|++++|...+++.++ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888899999998888877653 111 1234677788889999999999999998887 43 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ---ILKASKLFSDMRSDNLRPDN-CTYTTM 514 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l 514 (605)
.++.++.+.|++++|...+++.+......+.+.....+..+...+...++ +.+|+..+++.. ..|+. ..+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 89999999999999999999988865443333444556666677777888 778888877632 33333 366788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 036303 515 LRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...|...|++++|...++++++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999998875
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.4e-11 Score=108.96 Aligned_cols=208 Identities=10% Similarity=0.028 Sum_probs=164.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036303 327 ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALI 406 (605)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 406 (605)
.|+..+......+...|++++|...|+++.+...+++...+..+..++...|++++|+..+++..... +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788889999999999999999999999998654678888889999999999999999999999874 33567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc---HHHH
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSV-------FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN---HVLY 476 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~ 476 (605)
..+...|++++|...+++.++.. +.+. .++..++..+...|++++|+..|++++. ..|+ ...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~ 156 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------VTSKKWKTDAL 156 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------cCCCcccHHHH
Confidence 99999999999999999999875 4455 5588888999999999999999999986 5565 5667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
..++.++... +...++++...+ ..+...+.... ....+.+++|+..++++++ +.| +..+...+..+
T Consensus 157 ~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 157 YSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHHH
Confidence 7777777654 445566666532 22344444433 3356779999999999998 456 46666655544
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.3e-12 Score=121.98 Aligned_cols=204 Identities=13% Similarity=0.036 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-C
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEK------G-VEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK------SL-V 396 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~ 396 (605)
.+..+...+...|++++|...++++... + .+.....+..+...+...|++++|...++++... +. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444455555555555555444432 1 1122344555555666666666666666555543 11 1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC--
Q 036303 397 PDVVVFTALIDGLSKDGNMKETLRLYKEMLEA------K-ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG-- 467 (605)
Q Consensus 397 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 467 (605)
.....+..+...+...|++++|..+++++++. + .+....++..++.++...|++++|+..+++++......
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12345566666777777777777777776653 1 12223456677777778888888888887776531100
Q ss_pred -CCCc-------cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 468 -YCSP-------NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 468 -~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...+ ....+......+...+.+.++...+++... ..|+ ..++..+..+|...|++++|...++++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0001 111122223333445566667777777665 2343 44788899999999999999999999876
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=1.6e-10 Score=110.87 Aligned_cols=279 Identities=12% Similarity=0.011 Sum_probs=152.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCh----hhH
Q 036303 227 FGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIF----VYNCLIDGHCKAGNLFEAMSLCSEMEKFEI-SPDV----FTY 297 (605)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~ 297 (605)
.......+...|++++|...++.........+.. ++..+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556778999999999999988754222222 456677788899999999999998765211 1122 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----cCHHH
Q 036303 298 NILIKGLCGVGQLEGAEGLLQKMYKE----GIL--A-NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVE----PNVVT 366 (605)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 366 (605)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56777888999999999999887653 111 1 1234455666667777777777777766553211 01223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036303 367 FSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV-VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLF 445 (605)
Q Consensus 367 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (605)
+..+...+...|++++|...+++.......++. ..+... .....+..+.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~ 226 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN------------------------------ANKVRVIYWQ 226 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH------------------------------HHHHHHHHHH
Confidence 334444444445555555444444322100000 000000 0001222344
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHh
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPDN-CTYTTMLRGLLR 520 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~ 520 (605)
..|++++|...+++........ .......+..+..++...|++++|...++++... +..++. ..+..+..++..
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 5566666666665554422110 0111223445555666666666666666665431 111122 144455556666
Q ss_pred cCCHHHHHHHHHHHHH
Q 036303 521 AKRMLDVMMLLADMIK 536 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~ 536 (605)
.|+.++|...+++++.
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 6777777776666654
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=6.4e-12 Score=128.92 Aligned_cols=167 Identities=19% Similarity=0.126 Sum_probs=148.7
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.|.++.+++.++..|.+.|++++|+..|+++ ..+.+..++..++.++.+.|++++|+..|+++++..+. +...|..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4557889999999999999999999999987 35667899999999999999999999999999988533 68899999
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADV 205 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 205 (605)
..++...|++++|++.|++.++.. +-+..+++.+..+|.+.|++++|++.|++.++..+. +...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 999999999999999999999875 336889999999999999999999999999987544 677899999999999999
Q ss_pred HHHHHHHHHHHh
Q 036303 206 NRALEFYHEMLH 217 (605)
Q Consensus 206 ~~a~~~~~~~~~ 217 (605)
++|.+.+++.++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888764
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=3.4e-11 Score=102.55 Aligned_cols=165 Identities=15% Similarity=0.051 Sum_probs=133.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
....+..++..+...|++++|...|+++. .+.+..++..++..+...|++++|...++++.... +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34567788888999999999999998873 44567888888888999999999999999988774 3367788888888
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 036303 129 CCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRA 208 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 208 (605)
+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++.....+. +..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888899999999998888764 346777888888888888888888888888776433 566777788888888888888
Q ss_pred HHHHHHHHhC
Q 036303 209 LEFYHEMLHH 218 (605)
Q Consensus 209 ~~~~~~~~~~ 218 (605)
.+.+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888887664
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=1.1e-11 Score=113.71 Aligned_cols=233 Identities=13% Similarity=0.076 Sum_probs=162.2
Q ss_pred HhcCCHHHHHHHHHHHhhC-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHhhHHHH
Q 036303 340 CKEGDMEKALSVCSQMTEK-------GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK------SL-VPDVVVFTAL 405 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 405 (605)
...|+++.|..++++..+. ..+....++..+...+...|++++|...+.++... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4566777777777666552 22334667888999999999999999999998864 21 2235578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC---CCCCccHHH
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEA------K-ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG---GYCSPNHVL 475 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~ 475 (605)
...+...|++++|...+++++.. . .+....++..++..+...|++++|+..+++++..... ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 1 1334567888999999999999999999999986211 011223567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH----HCC-CCc-
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSD-------NLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMI----KMG-IVP- 541 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~- 541 (605)
+..++.++...|++++|...++++.+. ...+... .+..+...+...+....+.. +..+. ..+ ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 788999999999999999999998862 1233333 44444444443333222222 12111 111 223
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 542 DAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
...++..++.+|...|++++|..+++++.+..
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 36788899999999999999999999998753
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=2.4e-11 Score=111.88 Aligned_cols=202 Identities=8% Similarity=-0.005 Sum_probs=128.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHH
Q 036303 373 GQCKAGNIDAAMGLYTEMVIK----SLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI---TP--SVFTVSSLIH 442 (605)
Q Consensus 373 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 442 (605)
.|...|++++|...|.+.... +.++ ...++..+..+|...|++++|+..+++.++... .+ ...++..++.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555554432 1111 134556666666667777777776666654310 11 1346777888
Q ss_pred HHHhc-CCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------HHHHHH
Q 036303 443 GLFKN-GRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN------CTYTTM 514 (605)
Q Consensus 443 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l 514 (605)
+|... |++++|+..|++++...+..+..+. ..++..++.++...|++++|+..|+++.+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999999888875421111111 346778888999999999999999998883221111 146677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcc------HHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCC
Q 036303 515 LRGLLRAKRMLDVMMLLADMIKMGIVPD------AVINQVMVRGYQ--ENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
..++...|++++|+..+++.++ +.|+ ...+..++.++. ..+++++|+..|+++.+++|..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 7788889999999999998876 3443 223445666665 5677888888888887766643
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.34 E-value=6.4e-11 Score=107.23 Aligned_cols=176 Identities=10% Similarity=-0.051 Sum_probs=125.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHH
Q 036303 398 DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS---VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV 474 (605)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (605)
+...+..+...+...|++++|...|+++++.. +.+ ..++..++.++...|++++|+..|++.+...+.. +....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~ 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--PRVPQ 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--chhHH
Confidence 44555566666777777777777777776653 223 5566677777777777777777777777654211 12244
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHhcCCHHHHH
Q 036303 475 LYAAIIQALCY--------DGQILKASKLFSDMRSDNLRPDNC-TY-----------------TTMLRGLLRAKRMLDVM 528 (605)
Q Consensus 475 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~g~~~~A~ 528 (605)
++..++.++.. .|++++|+..|+++++ ..|+.. .. ..+...|...|++++|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 55666667766 7788888888888776 334322 22 56688899999999999
Q ss_pred HHHHHHHHCCCC-c-cHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCC
Q 036303 529 MLLADMIKMGIV-P-DAVINQVMVRGYQEN----------GDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 529 ~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
..++++++.... + ....+..++.+|... |++++|...++++.+..|++..
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 999999874321 1 367888999999977 9999999999999999998654
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=8.2e-10 Score=98.98 Aligned_cols=185 Identities=9% Similarity=0.020 Sum_probs=105.8
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036303 383 AMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI-TPSVFTVSSLIHGLFKNGRISNALNFFLEKT 461 (605)
Q Consensus 383 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (605)
|+..+++....+ .++...+..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33444444556666666667777666666655442 1345555566666666777777777776665
Q ss_pred hccCCCCCCc-----cHHHHHHHHHH--HHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 462 DKTDGGYCSP-----NHVLYAAIIQA--LCYDG--QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 462 ~~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 532 (605)
+. .| +..+...++.+ ....| ++.+|..+|+++.+ ..|+..+-..++.++.+.|++++|.+.++
T Consensus 164 ~~------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 NA------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HH------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hc------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 53 34 23333334333 22223 67777777777765 34553332333336667777777777777
Q ss_pred HHHHC-----CC---Cc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 533 DMIKM-----GI---VP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 533 ~~~~~-----~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.+++. .. .| ++.++..++.+....|+ +|.++++++.+..|+++.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 55531 00 13 56666566666666665 677777777777776553
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.32 E-value=1.7e-10 Score=101.57 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHH
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-P-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV---FTVS 438 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~ 438 (605)
...+..++..+...|++++|+..|++++..... | ....+..++.++...|++++|+..|+++++... .+. .++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHH
Confidence 344455566666677777777777776654211 1 123555566667777777777777777666531 111 1344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HH------
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TY------ 511 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~------ 511 (605)
.++.++...|.. .+ ..|..+...+...|++++|+..|+++++ ..|+.. .+
T Consensus 83 ~~g~~~~~~~~~-----~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL----------------QGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHC-----------------------------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh----------------hhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH
Confidence 444444432210 00 0011222233456788888888888887 445533 22
Q ss_pred -----------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 512 -----------TTMLRGLLRAKRMLDVMMLLADMIKMGIVPD----AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 512 -----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
..+...+...|++++|+..++++++. .|+ ..++..++.+|.+.|++++|...++++....|++
T Consensus 140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 34566788999999999999999973 332 4678999999999999999999999999999988
Q ss_pred CCCCcc
Q 036303 577 SETEGH 582 (605)
Q Consensus 577 ~~~~~~ 582 (605)
.+-+.|
T Consensus 218 ~~~~~~ 223 (225)
T 2yhc_A 218 LEHHHH 223 (225)
T ss_dssp CCCTTC
T ss_pred hhhccc
Confidence 776554
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=5.5e-11 Score=103.18 Aligned_cols=129 Identities=12% Similarity=-0.037 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRG 517 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 517 (605)
.++.++...|++++|+..|++.+... +.+...+..++.++...|++++|+..|+++++ +.|+ ...+..+..+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-----PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 37888889999999999999988864 45678888899999999999999999999988 5565 4578888887
Q ss_pred HHhcCC--HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 518 LLRAKR--MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 518 ~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
|...|+ .+.+...+.+... ..|....+...+.++...|++++|...++++.+++|+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 766543 3445555555432 33334456667888888999999999999999998863
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=3.5e-11 Score=110.75 Aligned_cols=185 Identities=9% Similarity=-0.069 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA----KITPS-VFTVSSLIHGLFKNGRISNA 453 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 453 (605)
++++|...|.+. +..|...|++++|...|.+.++. +-++. ..++..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888887765 34577899999999999988764 21222 46788999999999999999
Q ss_pred HHHHHHhhhccCCCCCCc-cHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCH
Q 036303 454 LNFFLEKTDKTDGGYCSP-NHVLYAAIIQALCYD-GQILKASKLFSDMRSDNLRPD-------NCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~ 524 (605)
+..|++++......+-.. -..++..++.+|... |++++|+..|+++++ +.|+ ..++..+...+...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999887543221111 145788899999996 999999999999987 3231 34688899999999999
Q ss_pred HHHHHHHHHHHHCCCCcc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 525 LDVMMLLADMIKMGIVPD------AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
++|+..++++++...... ...+..++.++...|++++|...++++.+.+|......
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 999999999998432221 12678899999999999999999999999999876543
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=7.9e-11 Score=108.05 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=160.8
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCcCHHHHHHH
Q 036303 305 CGVGQLEGAEGLLQKMYKE-------GILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK------G-VEPNVVTFSSL 370 (605)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 370 (605)
...|++++|+..+++..+. +.+....++..+...+...|++++|...++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 22234567888999999999999999999998764 1 12345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHH
Q 036303 371 IDGQCKAGNIDAAMGLYTEMVIK------SL-VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA------K-ITPSVFT 436 (605)
Q Consensus 371 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 436 (605)
..++...|++++|...+.++... .. +.....+..+...+...|++++|...++++++. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998865 11 224567888899999999999999999999875 1 1223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCC----CCCCccHHHHHHHHHHHHccCC------HHHHHHHHHHHHhCCCCC
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDG----GYCSPNHVLYAAIIQALCYDGQ------ILKASKLFSDMRSDNLRP 506 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p 506 (605)
+..++.++...|++++|+.++++++..... .........|..+...+...+. +..+...++.... ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 889999999999999999999999985211 0011222334344444433332 3333333333221 223
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 507 D-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 507 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+ ..++..+..+|...|++++|...++++++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 34788899999999999999999999875
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=1.2e-11 Score=100.81 Aligned_cols=131 Identities=7% Similarity=-0.097 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL 518 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (605)
|+..+...|++++|+..++...... +.+...+..+..+|...|++++|++.|+++++ +.|+ ...|..+..++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-----p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-----RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLY 75 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-----HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4455666778888888888887642 33355566788888888999999999988887 5554 55888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCCCCC
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRC-SEFLKESRIGSSET 579 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~ 579 (605)
...|++++|+..++++++ +.| +..++..++.+|.+.|++++|... ++++.+++|+++..
T Consensus 76 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 889999999999998887 456 588888888899999988877664 58888888886543
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=3.3e-10 Score=102.49 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=61.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCcc
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTMLRGLLRA----------KRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 542 (605)
..++.+|...|++++|+..|+++++ ..|+ ...+..+..+|... |++++|+..++++++. .|+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~ 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPD 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCC
Confidence 5678889999999999999999988 3454 34677888888866 8999999999999973 343
Q ss_pred ----HHHHHHHHHHHHhcCChhHHH
Q 036303 543 ----AVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 543 ----~~~~~~l~~~~~~~g~~~~A~ 563 (605)
......+..++.+.|+++++.
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345555666666666555443
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.25 E-value=1.5e-09 Score=94.28 Aligned_cols=174 Identities=8% Similarity=-0.020 Sum_probs=110.2
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 036303 383 AMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG----RISNALNFFL 458 (605)
Q Consensus 383 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 458 (605)
|+..|++..+.+ ++..+..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455555555543 55556666666666667777777776666643 45556666666655 4 6777777777
Q ss_pred HhhhccCCCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHH
Q 036303 459 EKTDKTDGGYCSPNHVLYAAIIQALCY----DGQILKASKLFSDMRSDNLRPD---NCTYTTMLRGLLR----AKRMLDV 527 (605)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A 527 (605)
+..+ ..++.++..+...|.. .+++++|+++|+++.+. .|+ +..+..|...|.. .+++++|
T Consensus 78 ~A~~-------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVE-------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--SESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHH-------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHH-------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7654 2345556666666665 66777777777777663 232 4566666667766 6677777
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 036303 528 MMLLADMIKMGIVPDAVINQVMVRGYQEN-G-----DLKSAFRCSEFLKESRI 574 (605)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 574 (605)
+..++++.+. ..++..+..++.+|... | ++++|..+++++.+.+.
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7777777764 23445666777776643 2 77777777777777653
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=3.3e-10 Score=98.23 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHH
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQAL 483 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (605)
.+..++...|++++|+..|++.++.. |.+...+..++.++...|++++|+..|++++... +.+..+|..++.+|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-----ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHH
Confidence 37777888888888888888888765 5567788888888888888888888888888764 45577777777777
Q ss_pred HccCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 036303 484 CYDGQ--ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVR 551 (605)
Q Consensus 484 ~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 551 (605)
...|+ .+.+...++++.. ..|....+.....++...|++++|+..|+++++ +.|+......+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 65543 3455666665542 222223344455566677888888888888886 5676554444433
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=6.4e-10 Score=88.83 Aligned_cols=133 Identities=10% Similarity=0.110 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTML 515 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (605)
.+..++..+...|++++|+.+++++.... +.+...+..++..+...|++++|.+.++++.+.+ +.+...+..++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 45667777888888888888888887753 4456777788888888899999999999888732 23456788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 516 RGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..+...|++++|...++++++.. +.+..++..++.++...|++++|...++++.+.+|+
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88999999999999999988743 235788888999999999999999999999988875
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=6.9e-09 Score=93.01 Aligned_cols=244 Identities=12% Similarity=0.107 Sum_probs=151.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 269 HCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKA 348 (605)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (605)
..-.|++..++.-. .+.....+......+..++...|++... ....|....+..+...+ ..+ +
T Consensus 23 ~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 34467777666632 2211111222223344666666666532 12234444444444333 322 6
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 349 LSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-VPDVVVFTALIDGLSKDGNMKETLRLYKEMLE 427 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 427 (605)
+..+++..+.+ +++...+..+..++...|++++|++++.+.+..+. .-+...+..+++.+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776654 34555566778888888888888888888866543 13556677778888888999999999988877
Q ss_pred CCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036303 428 AKITP-----SVFTVSSLIHG--LFKNG--RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSD 498 (605)
Q Consensus 428 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (605)
. .| +..+...++.+ ....| +..+|..+|+++... .|+...-..++.++.+.|++++|.+.++.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~------~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT------FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT------SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh------CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 44 34555556555 33334 888899999988765 34322222333478888999999999887
Q ss_pred HHhC-----CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 499 MRSD-----NL---RPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 499 ~~~~-----~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
+.+. +. .|+ +.++..++......|+ +|.++++++.+ ..|+
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~ 285 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHE 285 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCC
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCC
Confidence 6652 11 244 4466566666666776 78888888887 4564
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.22 E-value=4.2e-08 Score=96.62 Aligned_cols=45 Identities=16% Similarity=-0.026 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036303 313 AEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK 358 (605)
Q Consensus 313 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 358 (605)
+..+|+++.... +.+...|...+..+.+.|+.+.|..+++++...
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 444555555432 334555555555555666666666666666655
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=4.5e-11 Score=97.40 Aligned_cols=144 Identities=7% Similarity=-0.001 Sum_probs=106.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (605)
|...+...|++++|+..++...... +.+...+..++..|.+.|++++|++.|+++++.. +.+..+|..++.++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----ERDPKAHRFLGLLYE 76 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHH
Confidence 3445556677888888888776542 2234456677888888888888888888888764 456778888888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCc-cHHHHHHHHHHHHhcCC
Q 036303 485 YDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMML-LADMIKMGIVP-DAVINQVMVRGYQENGD 558 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 558 (605)
..|++++|+..|+++++ +.|+ ...+..+..+|...|++++|... ++++++ +.| ++.+|......+...|+
T Consensus 77 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 88999999999988887 5565 55788888888888888776654 578877 456 57788888888877775
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=6.2e-09 Score=94.49 Aligned_cols=222 Identities=10% Similarity=0.036 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH----Hhc---CC
Q 036303 344 DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG--NIDAAMGLYTEMVIKSLVPDVVVFTALIDGL----SKD---GN 414 (605)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 414 (605)
..++|+.+++.++..++ .+...|+.-..++...| ++++++..+..++..... +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34577777777777642 24556666666666666 788888888877766422 444444433333 344 67
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC----
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS--NALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ---- 488 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 488 (605)
+++++.+++++++.+ +.+..+|..-..++.+.|.++ ++++++++++... +.|..+|+....++...+.
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-----~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-----LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhccccchh
Confidence 889999999998876 668888888888888888888 8999999988875 6678888877777777776
Q ss_pred --HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-CCc-cHHHHHHHHHHHHhcCChhHH
Q 036303 489 --ILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLD-VMMLLADMIKMG-IVP-DAVINQVMVRGYQENGDLKSA 562 (605)
Q Consensus 489 --~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 562 (605)
++++++.+++++. ..| |...|..+...+.+.|+..+ +..+..++.+.+ ..| ++..+..++++|.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 8899999999887 445 45578888888878777444 555666655432 123 678889999999999999999
Q ss_pred HHHHHHHHh-cCCC
Q 036303 563 FRCSEFLKE-SRIG 575 (605)
Q Consensus 563 ~~~~~~~~~-~~~~ 575 (605)
.++++.+.+ .+|-
T Consensus 278 ~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 278 RTVYDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHHHHTTCGG
T ss_pred HHHHHHHHhccChH
Confidence 999999986 5764
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.19 E-value=3.3e-10 Score=105.02 Aligned_cols=229 Identities=12% Similarity=0.040 Sum_probs=137.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 307 VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK-EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMG 385 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 385 (605)
.|++++|..++++..+.... .+.. .++++.|...|.++ +..|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 45667777777766553211 0222 46666666666554 445677788888888
Q ss_pred HHHHHHHCCC---CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 036303 386 LYTEMVIKSL---VP--DVVVFTALIDGLSKDGNMKETLRLYKEMLEAK--I-TPS--VFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 386 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
.|.+...... .+ -..++..+...|...|++++|+..|++.++.. . .+. ..++..++.+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877664310 01 13366677777778888888888887776531 0 111 3456677777777 88888888
Q ss_pred HHHHhhhccCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036303 456 FFLEKTDKTDGGYCSP-NHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD-NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
.|++++......+... ...++..+..++...|++++|+..|+++.+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888877643221111 1345667777778888888888888877652 11111 1245555666667788888888
Q ss_pred HHHHHHHCCCC-cc---HHHHHHHHHHHHhcCChhHHHH
Q 036303 530 LLADMIKMGIV-PD---AVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 530 ~~~~~~~~~~~-~~---~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
.+++.+ .... ++ ......++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888776 3211 01 22344555555 4666665555
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=3.1e-10 Score=117.33 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=88.3
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036303 375 CKAGNIDAAMGLYTEMV--------IKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK 446 (605)
Q Consensus 375 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (605)
...|++++|++.++++. ... +.+...+..+...+...|++++|...++++++.+ +.+...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555555 221 2233445555555555555666665555555543 3345555555555555
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 036303 447 NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 525 (605)
.|++++|+..|+++++.. +.+...|..+..++...|++++ ++.|+++++ ..|+ ...|..+..++...|+++
T Consensus 480 ~g~~~~A~~~~~~al~l~-----P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-----PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-----TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHH
Confidence 566666666665555542 2234445555555555555555 555555555 3332 335555555555566666
Q ss_pred HHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCC
Q 036303 526 DVMMLLADMIKMGIVPD-AVINQVMVRGYQENGD 558 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 558 (605)
+|+..++++++ +.|+ ..++..++.++...|+
T Consensus 552 ~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 552 GAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 66655555544 3342 4455555555544443
No 104
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=3.7e-08 Score=96.97 Aligned_cols=378 Identities=10% Similarity=0.030 Sum_probs=216.3
Q ss_pred hcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHH
Q 036303 96 KKG-KFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK-MVEA 173 (605)
Q Consensus 96 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 173 (605)
+.| +++.|..+|+++... -|. |+++.+..+|++.+.. .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 478888888888765 222 8899999999988875 4688888888877776653 3456
Q ss_pred HHHHHHHHHC-CCCC-CcccHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 036303 174 ESMFRSMREC-GVVP-NLYTYNALMDGYCK----VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFF 247 (605)
Q Consensus 174 ~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (605)
..+|+..+.. |..| +...|...+..+.. .++.+.+..+|++.+.. ++. ....+-..|.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~------------ 131 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFE------------ 131 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHH------------
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHH------------
Confidence 6677766553 4322 44556666655432 34566677777777652 211 1112211111
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 248 VHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILA 327 (605)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 327 (605)
..... .+..+...++.-. .+.+..|..+++.+... + . ..
T Consensus 132 -~fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~----------------------------~----~---~~ 170 (493)
T 2uy1_A 132 -NFELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPL----------------------------I----R---GW 170 (493)
T ss_dssp -HHHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----------------------------H----H---TC
T ss_pred -HHHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHH----------------------------H----h---hc
Confidence 11100 0011111111111 11223333333332210 0 0 00
Q ss_pred CHHHHHHHHHHHHhc--C-----CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 328 NVVTYNSLIDGYCKE--G-----DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV 400 (605)
Q Consensus 328 ~~~~~~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 400 (605)
+...|...+..-... + ..+.+..+|++++... +.+...|...+..+...|+.+.|..+|++.+.. +.+..
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence 122333332221111 0 1345677888888763 456888888888889999999999999999987 33433
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAK---------I---TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY 468 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 468 (605)
.+.. |+.....++. ++.+.+.- . .....+|...+....+.+..+.|..+|+.+ ...
T Consensus 248 l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~---- 315 (493)
T 2uy1_A 248 LSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE---- 315 (493)
T ss_dssp HHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS----
T ss_pred HHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC----
Confidence 3322 2221111111 22222110 0 111245666667677788899999999998 321
Q ss_pred CCccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHH
Q 036303 469 CSPNHVLYAAIIQALCYD-GQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVIN 546 (605)
Q Consensus 469 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 546 (605)
..+...|...+..-... ++.+.|..+|+.+.+. .|+ +..+...++-....|+.+.|..+|+++. .....|
T Consensus 316 -~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw 387 (493)
T 2uy1_A 316 -GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMW 387 (493)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHH
T ss_pred -CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHH
Confidence 22344444333332233 3699999999999884 243 4566667777778999999999999862 257888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 547 QVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
...+..=...|+.+.+.+++++..+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888877888999999998988875
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=1.1e-09 Score=100.35 Aligned_cols=167 Identities=10% Similarity=0.006 Sum_probs=134.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
+.+...+..+...+...|++++|...|+++++.. +.+...+..++.++...|++++|+..++++.... |+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------p~~~~ 186 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------QDTRY 186 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------CSHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------cchHH
Confidence 3455667778888889999999999999998876 5678889999999999999999999999887753 44333
Q ss_pred -HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 476 -YAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 476 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.......+...++.++|+..++++.+ ..|+ ...+..+..++...|++++|+..+.++++..... +...+..++.+
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 23333446677888889999999988 4554 5688899999999999999999999999743221 37889999999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 036303 553 YQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~ 571 (605)
|...|+.++|...+++...
T Consensus 265 ~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHH
Confidence 9999999999999988764
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=7.2e-10 Score=112.71 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=101.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNF 456 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (605)
.|++++|...++++.... +.+...+..+...+...|++++|...+++.++.. +.+...+..++.++...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888777653 3356677777788888888888888888888765 45677778888888888888888888
Q ss_pred HHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 036303 457 FLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRA---KRMLDVMMLLA 532 (605)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~ 532 (605)
++++++.. +.+...+..+..++...|++++|++.++++.+ ..| +...+..+..++... |++++|.+.++
T Consensus 80 ~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 80 LQQASDAA-----PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHhcC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 88887753 44567777888888888888888888888877 344 345777777788777 88888888888
Q ss_pred HHHHCC
Q 036303 533 DMIKMG 538 (605)
Q Consensus 533 ~~~~~~ 538 (605)
++++.+
T Consensus 153 ~al~~~ 158 (568)
T 2vsy_A 153 AAVAQG 158 (568)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 887643
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=6.8e-10 Score=93.40 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=124.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH-H
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC-C 129 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 129 (605)
..+..++..+.+.|++++|...|+++. .|.+..++..+..++...|++++|...|+++....+ ++..+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 357778888999999999999999883 566788999999999999999999999999877643 45444333222 2
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHhccCChHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVP-NLYTYNALMDGYCKVADVNRA 208 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 208 (605)
...++...|+..+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233445788888888764 3367888888999999999999999999988875443 345788888888889999999
Q ss_pred HHHHHHHHh
Q 036303 209 LEFYHEMLH 217 (605)
Q Consensus 209 ~~~~~~~~~ 217 (605)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887654
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=1.3e-10 Score=120.14 Aligned_cols=167 Identities=12% Similarity=0.005 Sum_probs=145.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHH
Q 036303 410 SKDGNMKETLRLYKEML--------EAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQ 481 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 481 (605)
...|++++|+..+++.+ +.. +.+...+..++.++...|++++|+..|+++++.. +.+...|..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----GWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----cchHHHHHHHHH
Confidence 77899999999999998 543 5567788999999999999999999999999874 556788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCh
Q 036303 482 ALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDL 559 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 559 (605)
++...|++++|++.|+++++ +.|+ ...+..+..++...|++++ +..++++++ +.| +...+..++.+|.+.|++
T Consensus 476 ~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998 5564 5588899999999999999 999999998 445 688999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccchhhh
Q 036303 560 KSAFRCSEFLKESRIGSSETEGHTTRSF 587 (605)
Q Consensus 560 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (605)
++|+..++++.+.+|++..........+
T Consensus 551 ~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 9999999999999998766654444443
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=5e-10 Score=94.21 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=121.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (605)
.+......+...|++++|...+++.++.. |.+...+..++.++...|++++|+..++++.... |++..+....
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~~ 80 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY------QDNSYKSLIA 80 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG------CCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc------CChHHHHHHH
Confidence 45556677888899999999998887654 5567788888889999999999999998887653 3443333222
Q ss_pred HH-HHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcC
Q 036303 481 QA-LCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENG 557 (605)
Q Consensus 481 ~~-~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 557 (605)
.. +...+...+|+..++++.+ ..|+ ...+..+..++...|++++|+..++++++....+ +...+..++.++...|
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 22 1222333457888998887 5564 5688888999999999999999999998744322 3668889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 036303 558 DLKSAFRCSEFLKE 571 (605)
Q Consensus 558 ~~~~A~~~~~~~~~ 571 (605)
+.++|...|+++..
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999988764
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=9.8e-09 Score=89.12 Aligned_cols=175 Identities=14% Similarity=0.037 Sum_probs=132.7
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHH
Q 036303 347 KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDG----NMKETLRLY 422 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 422 (605)
+|...|++..+.| +...+..+...|...+++++|+..|++....+ ++..+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677776653 56677777777777888888888888887764 55666777777776 5 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCC--ccHHHHHHHHHHHHc----cCCHHHH
Q 036303 423 KEMLEAKITPSVFTVSSLIHGLFK----NGRISNALNFFLEKTDKTDGGYCS--PNHVLYAAIIQALCY----DGQILKA 492 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~g~~~~A 492 (605)
++..+.+ +...+..+...|.. .+++++|+.+|++..... + .++.++..+...|.. .+++++|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-----ESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-----TSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-----CCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 8887754 66777788888776 788999999999888752 1 126778888888887 7889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 036303 493 SKLFSDMRSDNLRPDNCTYTTMLRGLLRA-K-----RMLDVMMLLADMIKMG 538 (605)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 538 (605)
+.+|+++.+. .++...+..|...|... | ++++|...++++.+.|
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999884 34555677777777653 3 8999999999998876
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.12 E-value=3.5e-10 Score=91.39 Aligned_cols=104 Identities=10% Similarity=-0.105 Sum_probs=89.2
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQ 547 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 547 (605)
+.+...+..++..+...|++++|+..|+++++ +.|+ ...|..+..+|...|++++|+..|+++++ +.| ++..|.
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~ 108 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHH
Confidence 33466778888899999999999999999998 5564 56888899999999999999999999998 455 588899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.++.+|.+.|++++|...|+++.+..|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999988653
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=5.6e-09 Score=83.23 Aligned_cols=127 Identities=12% Similarity=0.182 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA 482 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (605)
..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.... +.+...+..++..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----CCchHHHHHHHHH
Confidence 344444555555555555555554433 2344445555555555555555555555555432 2334445555555
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555566666666665555421 12334555555555566666666666655554
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.08 E-value=1.3e-09 Score=85.40 Aligned_cols=106 Identities=10% Similarity=-0.009 Sum_probs=92.9
Q ss_pred Ccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHH
Q 036303 470 SPN-HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVIN 546 (605)
Q Consensus 470 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 546 (605)
.|+ ...+...+..+.+.|++++|++.|+++++ +.| +...|..+..++...|++++|+..++++++ +.| +..+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~ 84 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGY 84 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHH
Confidence 444 45677889999999999999999999998 455 466888999999999999999999999998 445 68899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 547 QVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
..++.+|...|++++|...|+++.+++|++...
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999999999999987654
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=1.4e-08 Score=89.21 Aligned_cols=192 Identities=7% Similarity=-0.067 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHH
Q 036303 328 NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP--NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV--VVFT 403 (605)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 403 (605)
+...+..+...+...|++++|+..|+++.+..+.. ....+..++.++...|++++|+..|++++........ ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677788999999999999999999864321 1357788899999999999999999999987322111 1444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-----------
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN----------- 472 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------- 472 (605)
.+..++...|.. .+ ..+..+...+...|++++|+..|+++++..+.+...++
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 455555442210 00 00111122223344444555555544443321110000
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 473 -HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN----CTYTTMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 473 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
......++..+...|++++|+..|+++++ ..|+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456778899999999999999998 44553 467888999999999999999999888744
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=1.5e-09 Score=100.68 Aligned_cols=228 Identities=11% Similarity=0.057 Sum_probs=163.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036303 271 KAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG-VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKAL 349 (605)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 349 (605)
..|++++|.+++++..+.. +. .+.. .++++.|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3578889999999887632 11 1222 57888888887765 45678899999999
Q ss_pred HHHHHHhhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHhhHHHHHHHHHhcCCHHHHH
Q 036303 350 SVCSQMTEK----GVEP-NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL---VP--DVVVFTALIDGLSKDGNMKETL 419 (605)
Q Consensus 350 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~ 419 (605)
..+.++.+. +-.+ -..++..+..+|...|++++|+..|++.+.... .+ ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887654 1111 145788889999999999999999998775411 11 13567788888888 9999999
Q ss_pred HHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHH
Q 036303 420 RLYKEMLEAKIT---P--SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKAS 493 (605)
Q Consensus 420 ~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 493 (605)
..|++.++.... + ...++..++.++...|++++|+..|++++......+..+. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998864211 1 1457888999999999999999999999987643332222 225667777888889999999
Q ss_pred HHHHHHHhCCCCCC---H---HHHHHHHHHHHhcCCHHHHHH
Q 036303 494 KLFSDMRSDNLRPD---N---CTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 494 ~~~~~~~~~~~~p~---~---~~~~~l~~~~~~~g~~~~A~~ 529 (605)
..|++.. . .|+ . .....++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999998 3 332 1 1344455555 5677666555
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.06 E-value=3.8e-08 Score=90.49 Aligned_cols=172 Identities=11% Similarity=-0.024 Sum_probs=125.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV-----FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHV 474 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 474 (605)
.+...+..+...|++++|...+.+.++....... ..+..++..+...|++++|+..+++++.......... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777888888888888887775422111 1234456667788899999999998876433211111 145
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-cH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSD-NLRPD-----NCTYTTMLRGLLRAKRMLDVMMLLADMIKMG----IVP-DA 543 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 543 (605)
+++.++..|...|++++|+..++++.+. ...|+ ..++..++.+|...|++++|+..++++++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999998731 01222 2578889999999999999999999987531 111 17
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHHhc
Q 036303 544 VINQVMVRGYQENGDLKSA-FRCSEFLKES 572 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 572 (605)
.++..++.+|.+.|++++| ...++++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999 7788888765
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=1e-07 Score=86.46 Aligned_cols=226 Identities=10% Similarity=0.066 Sum_probs=161.1
Q ss_pred HHHHHHhcCCh-HHHHHHHHhc--CCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH---
Q 036303 58 LIIAFSEMGHI-EEALWVYRKI--EVLPAIQACNALLNGLIKKG--KFDSVWEFYEEMVLCGLVADVVTYGVLIDCC--- 129 (605)
Q Consensus 58 l~~~~~~~g~~-~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--- 129 (605)
.+.+..+.|.+ ++|+.+++++ ..|....+|+.-..++...| ++++++.+++.++..++. +..+|+.-..++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHH
Confidence 33344444554 6899998887 36667788888888888888 899999999999887644 556666555544
Q ss_pred -Hcc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 036303 130 -CGQ---GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV--EAESMFRSMRECGVVPNLYTYNALMDGYCKVA 203 (605)
Q Consensus 130 -~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 203 (605)
... +++++++.+++.+++.. +.+..+|+.-..++.+.|.++ ++++.++++.+.++. |..+|+.....+...+
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 444 78889999999988875 447788888887888888887 888888888887665 7777877766666666
Q ss_pred C------hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCC
Q 036303 204 D------VNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA-AGNFFVHMAKFG--VFPNIFVYNCLIDGHCKAGN 274 (605)
Q Consensus 204 ~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 274 (605)
. ++++++.+++++... +-|...++.+...+.+.|.... +..+...+.+.+ -+.+...+..++..|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 5 777888888777764 4566777777777766666333 444555554322 13455666777777777777
Q ss_pred HHHHHHHHHHHHh
Q 036303 275 LFEAMSLCSEMEK 287 (605)
Q Consensus 275 ~~~a~~~~~~~~~ 287 (605)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777765
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=3.5e-09 Score=96.87 Aligned_cols=163 Identities=9% Similarity=-0.002 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIY-TILIH 162 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 162 (605)
...+..+...+.+.|++++|...|+++....+. +...+..+..++...|++++|...++++.... |+.... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 344444555555555555555555555554322 44455555555555555555555555554442 222211 11222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHH
Q 036303 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQ-PNVVTFGVLMDGLCKVGELR 241 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 241 (605)
.+...++.++|...+++.....+. +...+..+...+...|++++|++.|.++++.... .+...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 234444455555555555544322 4445555555555555555555555555544211 01334555555555555555
Q ss_pred HHHHHHHHH
Q 036303 242 AAGNFFVHM 250 (605)
Q Consensus 242 ~a~~~~~~~ 250 (605)
.|...+++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555555443
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=1e-08 Score=89.27 Aligned_cols=129 Identities=10% Similarity=-0.031 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
.++..+...|++++|+..|++++ .|+...+..++.++...|++++|++.++++.+.. +.+...+..+..++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 33444445555555555555442 2244455555555555555555555555555421 11233455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCC--------------CCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 519 LRAKRMLDVMMLLADMIKMG--------------IVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~--------------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
...|++++|+..++++++.. ..| ...++..++.+|.+.|++++|...++++.+.+|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 55555555555555555421 111 12455555566666666666666666666555543
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.00 E-value=1.4e-09 Score=88.21 Aligned_cols=104 Identities=10% Similarity=-0.050 Sum_probs=87.9
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHH
Q 036303 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQV 548 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 548 (605)
.+...+..++..+...|++++|+..|+++.+ ..| +...|..+..+|...|++++|+..++++++ +.| ++..+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~ 94 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 3466677888889999999999999999887 445 566888888899999999999999999987 345 6888899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
++.+|...|++++|...++++.+.+|+++.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999999999999887543
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=1.1e-08 Score=80.05 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 512 (605)
...+...+..+.+.|++++|++.|+++++.. +.+...|..++.++...|++++|+..++++++ +.|+ ...|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~ 85 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHH
Confidence 3456667777888888888888888877753 45677778888888888888888888888887 4454 45777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.+..++...|++++|++.|+++++ +.| +..++..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHh
Confidence 888888888888888888888887 455 46666666544
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.96 E-value=1.7e-07 Score=86.04 Aligned_cols=169 Identities=11% Similarity=-0.041 Sum_probs=123.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-ccHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKI-TPSVF----TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-PNHVLYAA 478 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~ 478 (605)
.+..+...|++++|..++++..+... .|+.. .+..++..+...|++++|+..+++++.......-. ....+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788889999998888877431 12211 23346666777789999999999988743211111 11346888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcc-HHHHH
Q 036303 479 IIQALCYDGQILKASKLFSDMRS----D-NLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVPD-AVINQ 547 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 547 (605)
++.+|...|++++|+..++++.+ . +..+. ..++..+..+|...|++++|+..++++++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999884 1 12222 237888999999999999999999988752 22222 77899
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHhcC
Q 036303 548 VMVRGYQENGD-LKSAFRCSEFLKESR 573 (605)
Q Consensus 548 ~l~~~~~~~g~-~~~A~~~~~~~~~~~ 573 (605)
.++.+|.+.|+ +++|...++++.+..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999995 699999999998763
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=1.5e-08 Score=103.00 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=65.4
Q ss_pred CChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHH
Q 036303 66 GHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFD 143 (605)
Q Consensus 66 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 143 (605)
|++++|...|+++ ..+.+..++..+...+...|++++|.+.|++..+..+ .+...+..+..++...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555555444 1233344455555555555555555555555554421 234445555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc---CChHHHHHHHHHHHhC
Q 036303 144 EMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV---ADVNRALEFYHEMLHH 218 (605)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 218 (605)
+..+.. +.+...+..+..++.+.|++++|.+.|++..+..+. +...+..+...+... |++++|.+.+++.++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 554442 223444555555555555555555555555444322 334444455555555 5555555555555443
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.95 E-value=3.9e-08 Score=86.96 Aligned_cols=133 Identities=7% Similarity=-0.055 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTT 513 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ 513 (605)
....+...+...|++++|.+.|...... .|+......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~------~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA------GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT------TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 3445666778888888888888877653 3443355566667888888999998888665521 111 235677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIKMGIVP--DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
+..++...|++++|+..|++.......| ........+.++.+.|+.++|...|+++...+|+
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 7888888899999999988887533324 3557778888899999999999999999988887
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=2.6e-08 Score=90.68 Aligned_cols=200 Identities=11% Similarity=-0.028 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+...+..+...+...|++++|+..|.+++... +.+...+..+..++...|++++|...+++.++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566777777888888888888888887763 3366777788888888888888888888888765 556778888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (605)
++...|++++|+..|++++...+..........+..+ + ..++.... ........++......+.. + ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-----~---~~~~~~~~-~~~~~~~~~~~~i~~~l~~-l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-----R---IAKKKRWN-SIEERRIHQESELHSYLTR-L-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-----H---HHHHHHHH-HHHHTCCCCCCHHHHHHHH-H-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-----H---HHHHHHHH-HHHHHHHhhhHHHHHHHHH-H-HHH
Confidence 8888888888888888887753211111111111111 1 11122222 2222234445444444433 2 368
Q ss_pred CHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQEN-GDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 577 (605)
++++|++.++++++ ..| +......+...+.+. +.+++|.++|+++.+..+...
T Consensus 150 ~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~ 204 (281)
T 2c2l_A 150 ERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD 204 (281)
T ss_dssp HHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCC
T ss_pred HHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence 88999998888776 455 455556666666666 778899999998887554433
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.95 E-value=2.1e-07 Score=85.31 Aligned_cols=222 Identities=12% Similarity=0.047 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-C-CHHHHH
Q 036303 343 GDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG-NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKD-G-NMKETL 419 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~ 419 (605)
+..++|++++++++..++. +..+|+.-..++...| .+++++..+..++.... -+..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3345677777777666432 4555665555566666 47777777777776642 2555666555555554 5 677888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC---
Q 036303 420 RLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS--------NALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ--- 488 (605)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 488 (605)
.+++++++.+ +.+..+|..-..++.+.|.++ +++++++++++.. +.|..+|+.....+...++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-----p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-----GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcccccc
Confidence 8888887765 556777776666666666555 8888888888864 5678888888877777765
Q ss_pred ----HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC----C
Q 036303 489 ----ILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRM--------------------LDVMMLLADMIKMG----I 539 (605)
Q Consensus 489 ----~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~ 539 (605)
++++++.+++++. ..|+. ..|..+-..+.+.|+. .+...+..++...+ .
T Consensus 220 ~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 6889999998887 55654 4676666666665543 23333333333211 1
Q ss_pred -CccHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCC
Q 036303 540 -VPDAVINQVMVRGYQENGDLKSAFRCSEFLK-ESRI 574 (605)
Q Consensus 540 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 574 (605)
.+.+..+..++++|...|+.++|.++++.+. +.||
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 2468888999999999999999999999987 4444
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=7.5e-09 Score=87.14 Aligned_cols=124 Identities=7% Similarity=0.057 Sum_probs=93.2
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HHhcC
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRG-LLRAK 522 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g 522 (605)
...|++++|+..+++.+... +.+...|..++.++...|++++|+..|+++.+ ..| +...+..+..+ +...|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-----PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTT
T ss_pred hhccCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcC
Confidence 34677888888888877753 45667788888888888888888888888877 334 45577777777 66788
Q ss_pred CH--HHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 523 RM--LDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 523 ~~--~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
++ ++|...++++++. .| +..++..++.+|...|++++|...++++.+.+|++.
T Consensus 94 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp TCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred CcchHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 87 8888888888873 34 577888888888888999999998888888888764
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=1.7e-07 Score=81.43 Aligned_cols=131 Identities=8% Similarity=-0.064 Sum_probs=113.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQ 132 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (605)
..+..++..+...|++++|+..|+++. .++..++..++.++...|++++|...|++..... +.+...+..+..++...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 346778889999999999999999985 4578899999999999999999999999999875 34778899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 133 GDVMKALNLFDEMIDKGIEP---------------TVVIYTILIHGLCNENKMVEAESMFRSMRECGV 185 (605)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (605)
|++++|+..|++..+..... ....+..+..++.+.|++++|...|+...+..+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999863221 126788899999999999999999999988643
No 129
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.89 E-value=9.1e-07 Score=80.72 Aligned_cols=218 Identities=12% Similarity=0.004 Sum_probs=146.3
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--C
Q 036303 347 KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN----------IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDG--N 414 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 414 (605)
+|+.+++.++..++. +..+|+.--.++...+. +++++.++..++... +-+..+|+.-...+...| +
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 556666666655322 33333332222222222 567777777777654 336667766666666666 4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc-------
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGR-ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD------- 486 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 486 (605)
+++++.+++++++.+ +-+..+|+.-..++...|. ++++++.+.+++... +.|..+|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-----p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-----FSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHhhhccccc
Confidence 788888888888876 5677788777777777787 588888888888764 56677777666655544
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCcc-HHHH
Q 036303 487 -------GQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRA-----------KRMLDVMMLLADMIKMGIVPD-AVIN 546 (605)
Q Consensus 487 -------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~-~~~~ 546 (605)
+.++++++.+++++. ..|+.. .|+.+-..+.+. +.++++++.+.++++ +.|| ..++
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l 275 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWCL 275 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred cccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchHH
Confidence 457889999999887 556544 666565555544 457899999999997 5565 4444
Q ss_pred HHHHH---HHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 547 QVMVR---GYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 547 ~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
..++. .....|..+++..+++++.+.||-.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 33332 2335788899999999999999864
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.89 E-value=6.5e-09 Score=83.69 Aligned_cols=103 Identities=12% Similarity=-0.069 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
+...+..+...+...|++++|+..|+++.. ..| +...|..+..++...|++++|+..++++++. .| ++..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHH
Confidence 455667778888899999999999999887 445 4567888888999999999999999999874 45 68888899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 550 VRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+.+|...|++++|...++++.+.+|+++.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999887554
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=3.5e-08 Score=85.10 Aligned_cols=163 Identities=10% Similarity=-0.081 Sum_probs=99.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-ccHHHHHHHHHHHHccCCH
Q 036303 411 KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-PNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 489 (605)
..|++++|.+.++.+.. .......++..++..+...|++++|+..+++.+......+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664444332 212345566666777777777777777777766633222212 2345566777777778888
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCC
Q 036303 490 LKASKLFSDMRSD----NLRP--DNCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGD 558 (605)
Q Consensus 490 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~ 558 (605)
++|.+.++++.+. +-.| ....+..+...+...|++++|...+++.++. +... ...++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888887776652 1011 1235666777777788888888888777632 1111 13445777888888888
Q ss_pred hhHHHHHHHHHHhcCC
Q 036303 559 LKSAFRCSEFLKESRI 574 (605)
Q Consensus 559 ~~~A~~~~~~~~~~~~ 574 (605)
+++|...++++.+...
T Consensus 163 ~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887776643
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=2.5e-07 Score=84.94 Aligned_cols=171 Identities=9% Similarity=-0.021 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV-----VVFTALIDGLSKDGNMKETLRLYKEMLEAKI---TPS--VF 435 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 435 (605)
.+...+..+...|++++|.+.+.+.......... ..+..+...+...|++++|...+++.++... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566777888888888888877765322111 2233455667788899999999999886421 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-H
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP--NHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD-N 508 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~ 508 (605)
+++.++..|...|++++|+..|++++......+..+ ...++..++.+|...|++++|+..++++.+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788899999999999999999999884211111112 2257889999999999999999999998762 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 036303 509 CTYTTMLRGLLRAKRMLDV-MMLLADMIK 536 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 536 (605)
.+|..+..+|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788999999999999999 777887764
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=5.3e-07 Score=82.75 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHH
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEKGV-EPNV----VTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-PD----VVVFTAL 405 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 405 (605)
+..+...|++++|..++++...... .|+. ..+..+...+...|++++|+..+.++...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3445555566666666655554311 1111 11222333444444555555555555442111 11 1134444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 036303 406 IDGLSKDGNMKETLRLYKEML 426 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~ 426 (605)
...|...|++++|...+++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555544
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=7.8e-08 Score=79.76 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTT 513 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 513 (605)
..+..++..+...|++++|+..|++.+... +.+...+..++.++...|++++|+..++++.+ ..| +...+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~ 86 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 346667777888889999999998888763 45677888888889999999999999999887 344 4568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHH--HHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVIN--QVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
+..++...|++++|...++++++. .| +...+ ...+..+.+.|++++|...+++..+.
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888999999999999999999874 33 45555 44455588889999999999887765
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=1.6e-08 Score=81.67 Aligned_cols=94 Identities=18% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTM 514 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 514 (605)
.+..++..+.+.|++++|+..|++++... +.+...|..++.++...|++++|+..|+++.+ +.|+ +..|..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~l 110 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHH
Confidence 44444444555555555555555554432 23344455555555555555555555555554 2332 3344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 036303 515 LRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+|...|++++|+..|+++++
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.84 E-value=1.4e-08 Score=84.14 Aligned_cols=106 Identities=12% Similarity=-0.027 Sum_probs=81.0
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQ 547 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 547 (605)
+.+...+..+...+...|++++|++.|+++++ +.| +...|..+..+|...|++++|+..++++++. .| +..+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 83 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWS 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 34456677777788888888888888888877 344 4557777788888888888888888888773 34 577788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.++.+|...|++++|...++++.+.+|++...
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 88888888888888888888888888877664
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.83 E-value=1.7e-08 Score=80.70 Aligned_cols=119 Identities=12% Similarity=-0.011 Sum_probs=100.2
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQ 547 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 547 (605)
+.+...+..++..+...|++++|+..|+++++ ..|+ ...+..+..++...|++++|...++++++. .| +...+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHH
Confidence 45677888999999999999999999999988 3454 668889999999999999999999999984 35 688999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhhhccc
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGHLK 592 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (605)
.++.+|...|++++|...++++.+.+|+........+...+....
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999866555555655555443
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=1.6e-06 Score=79.50 Aligned_cols=176 Identities=10% Similarity=-0.028 Sum_probs=132.0
Q ss_pred HHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc-C-C
Q 036303 60 IAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKG-KFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQ-G-D 134 (605)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 134 (605)
....+.+..++|+++++++ ..+.+..+|+.-..++...| .+++++.+++.++...+. +..+|+.-..++... + +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344555567899999888 36677888988888888888 599999999999988654 677888777777666 6 8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC--
Q 036303 135 VMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV--------EAESMFRSMRECGVVPNLYTYNALMDGYCKVAD-- 204 (605)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-- 204 (605)
+++++++++.+++.. +.+..+|+.-..++.+.|.++ ++++.++++.+..+. |..+|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 899999999999875 347778877666666666665 888888988887665 77788888777777775
Q ss_pred -----hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 036303 205 -----VNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGE 239 (605)
Q Consensus 205 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (605)
++++++.+++++... +-|...+..+-..+.+.|.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 678888888877763 4466666665555555554
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.81 E-value=3.6e-08 Score=77.31 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcc----HHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMG--IVPD----AVI 545 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~ 545 (605)
..++..++..+.+.|++++|++.|+++++ +.|+ ...|..+..+|...|++++|+..++++++.. ..++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 45677888999999999999999999988 5565 5588889999999999999999999988632 1111 357
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
|..++.++...|++++|+..|+++.+..|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 888999999999999999999999987765
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.80 E-value=2.6e-08 Score=77.30 Aligned_cols=99 Identities=8% Similarity=0.003 Sum_probs=83.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.+..++..+.+.|++++|+..++++++ ..| +...|..+..++...|++++|+..++++++ +.| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 355677888999999999999999998 456 566888999999999999999999999998 456 68899999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 553 YQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
|...|++++|+..++++.+.+|+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999998764
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.80 E-value=2.5e-07 Score=79.69 Aligned_cols=160 Identities=9% Similarity=-0.046 Sum_probs=96.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCH
Q 036303 376 KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA----KI-TPSVFTVSSLIHGLFKNGRI 450 (605)
Q Consensus 376 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 450 (605)
..|++++|.+.++.+... .......+..+...+...|++++|...+++.++. +. +....++..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 356666666643333221 1223445666666666777777777777666541 11 12234566677777778888
Q ss_pred HHHHHHHHHhhhccCCCCCC--ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCC
Q 036303 451 SNALNFFLEKTDKTDGGYCS--PNHVLYAAIIQALCYDGQILKASKLFSDMRSDN---LRPD--NCTYTTMLRGLLRAKR 523 (605)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~ 523 (605)
++|+..+++.+......+.. .....+..+...+...|++++|...+++..+.. -.+. ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 88888887776642211111 123456677778888888888888888876420 1111 2245677778888888
Q ss_pred HHHHHHHHHHHHH
Q 036303 524 MLDVMMLLADMIK 536 (605)
Q Consensus 524 ~~~A~~~~~~~~~ 536 (605)
+++|...++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=4.3e-08 Score=76.94 Aligned_cols=98 Identities=11% Similarity=0.017 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMV 550 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 550 (605)
...|...+..+...|++++|+..|+++++ ..| +...|..+..++...|++++|+..++++++. .| +...+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 45677788888999999999999999988 445 4668888999999999999999999999873 45 588899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC
Q 036303 551 RGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
.++...|++++|...++++.+.+|
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999983
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=1.1e-07 Score=75.29 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 512 (605)
...+..++..+...|++++|+..|++.+... +.+...+..++.++...|++++|++.++++.+ ..| +...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~ 88 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYT 88 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHH
Confidence 3344444445555555555555555544432 22344444555555555555555555555544 222 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENG 557 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 557 (605)
.+..++...|++++|...++++++. .| +...+..++.++.+.|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 5555555555555555555555442 22 2444444444444433
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=4.1e-07 Score=80.49 Aligned_cols=197 Identities=8% Similarity=-0.034 Sum_probs=128.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 036303 341 KEGDMEKALSVCSQMTEKGVEPNVVTFSSL-------IDGQCKAGNIDAAMGLYTEMVIKSLVPD--------------- 398 (605)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 398 (605)
..++...|.+.|.++....+ -....|..+ ..++...++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 46677777777777776632 245555555 34444444455555444444331 111
Q ss_pred -------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc
Q 036303 399 -------VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP 471 (605)
Q Consensus 399 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (605)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-----d~ 167 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-----DK 167 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-----CH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-----Cc
Confidence 1223345566778889999998888877654 433366666777888899999999998665421 12
Q ss_pred c--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH
Q 036303 472 N--HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQ 547 (605)
Q Consensus 472 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (605)
. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++.. ..|+..++.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~ 245 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHH
Confidence 1 23567788888899999999999998875332254 33566777788889999999999999887 345544444
Q ss_pred HH
Q 036303 548 VM 549 (605)
Q Consensus 548 ~l 549 (605)
.|
T Consensus 246 aL 247 (282)
T 4f3v_A 246 AL 247 (282)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.78 E-value=7.8e-08 Score=75.37 Aligned_cols=104 Identities=6% Similarity=0.060 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-------- 507 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------- 507 (605)
.+..++..+.+.|++++|+..|++++... +.+...|..++.+|...|++++|++.++++++ +.|+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~ 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHH
Confidence 45556666667777777777777766643 34456666677777777777777777776665 2221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 036303 508 NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQV 548 (605)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (605)
..+|..+..++...|++++|++.+++.++ ..||+.+...
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 12455666667777777777777777765 3455554443
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=3.5e-08 Score=79.77 Aligned_cols=97 Identities=12% Similarity=-0.000 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTY 511 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 511 (605)
+...+..++..+...|++++|+..|++++... +.+...|..++.++...|++++|+..|+++++ +.| ++..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~ 92 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHH
Confidence 44556666777777777777777777777653 44566777777777777888888888877776 344 34566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+..++...|++++|...++++++
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777778888888888777775
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=1.2e-07 Score=86.23 Aligned_cols=195 Identities=10% Similarity=-0.004 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036303 83 AIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIH 162 (605)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (605)
+...+..++..+.+.|++++|+..|++++...+ .+...|..+..++...|++++|+..+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 445566666667777777777777777766532 256666777777777777777777777776653 235566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 036303 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA 242 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (605)
++...|++++|...|++..+.++. +...+...+....+. .+... +........+.+......+.. + ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 777777777777777766654321 111111122111111 11111 111222222333333333322 2 2466666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 036303 243 AGNFFVHMAKFGVFPNIFVYNCLIDGHCKA-GNLFEAMSLCSEMEK 287 (605)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 287 (605)
|.+.++...+.. +.+......+...+.+. +.+++|.++|..+.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 766666665542 12222333333333333 456667777766544
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.77 E-value=7.2e-08 Score=73.68 Aligned_cols=105 Identities=10% Similarity=-0.037 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP--DAVINQVM 549 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 549 (605)
+...+..++..+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++++.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567788888999999999999999998832 2356688899999999999999999999999853 23 58899999
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhcCCCCCC
Q 036303 550 VRGYQEN-GDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 550 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+.++... |++++|.+.++++.+..|++++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 112 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHHH 112 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCCC
Confidence 9999999 9999999999999999998653
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=1.1e-07 Score=74.94 Aligned_cols=117 Identities=11% Similarity=0.088 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 512 (605)
...+..++..+...|++++|+..+++.+... +.+...+..++.++...|++++|++.++++.+. .| +...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 84 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHH
Confidence 3344555555556666666666666655542 234455555566666666666666666666552 23 244555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCh
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDL 559 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 559 (605)
.+..++...|++++|...++++++. .| +..++..++.++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 5566666666666666666666552 23 455555666666555553
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.76 E-value=6.5e-08 Score=76.93 Aligned_cols=105 Identities=8% Similarity=-0.054 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-------------NCTYTTMLRGLLRAKRMLDVMMLLADMIKM---- 537 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 537 (605)
.+...+..+...|++++|+..|+++++ +.|+ ...|..+..++...|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 355666777788899999999988887 4454 228889999999999999999999999983
Q ss_pred -CCCc-cHHHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCc
Q 036303 538 -GIVP-DAVIN----QVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 538 -~~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (605)
.+.| +...| ...+.++...|++++|+..|+++.+++|++.....
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 1167 47888 99999999999999999999999999999876644
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=2.8e-07 Score=76.28 Aligned_cols=128 Identities=8% Similarity=0.040 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHH
Q 036303 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAI 479 (605)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 479 (605)
..+..+...+...|++++|...+++.++.. +.+..++..++.++...|++++|+..+++.+... +.+...+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~ 87 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cccHHHHHHH
Confidence 345566667777888888888888877754 4567777788888888888888888888887753 4456777788
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPD-NCTYT--TMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
+.++...|++++|.+.++++.+ ..|+ ...+. ..+..+...|++++|+..+.+..
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888888887 3343 33443 33334667788888888877654
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=1.2e-07 Score=88.80 Aligned_cols=135 Identities=9% Similarity=-0.047 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC----------CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC----------SPNHVLYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
+...+..++..+.+.|++++|+..|++++...+.... +.....|..+..++...|++++|+..++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 3445666666677777777777777777665321000 00147788999999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHH-HHHHHHHh
Q 036303 503 NLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAF-RCSEFLKE 571 (605)
Q Consensus 503 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 571 (605)
+.| +...+..+..+|...|++++|+..|+++++ +.| +..++..++.++.+.|++++|. ..|+++.+
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 456888999999999999999999999998 455 6888999999999999999994 46666654
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.72 E-value=1.4e-05 Score=73.01 Aligned_cols=195 Identities=8% Similarity=-0.023 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG--NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN-MKETLRL 421 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 421 (605)
+++++.+++.+....+ -+..+|+.-..++...+ .+++++.++..+.... +-+...|+.-..++...|. +++++..
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3455555555555432 25555555555555555 3566666666666553 2244555555555555555 4666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc-
Q 036303 422 YKEMLEAKITPSVFTVSSLIHGLFKN--------------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD- 486 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 486 (605)
++++++.+ +-+..+|+.....+.+. +.++++++++.+.+... +.|..+|+.+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-----P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-----PNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcc
Confidence 66666654 44555555555544443 34677888888877764 55667776555444443
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHH
Q 036303 487 ----------GQILKASKLFSDMRSDNLRPDNC-TYTTMLRG---LLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVR 551 (605)
Q Consensus 487 ----------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 551 (605)
+.++++++.++++.+ ..||.. ++..++.. .-..|..+++...+.++++ +.| ...-|..+..
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRS 317 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHH
Confidence 457899999999998 677763 33222221 1135778899999999998 667 4555555543
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=2.5e-07 Score=73.21 Aligned_cols=119 Identities=10% Similarity=-0.020 Sum_probs=74.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.+.++..+..++..+.+.|++++|...|+++ ..+.+..++..++.++...|++++|...++++.+..+ .+...+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 3345556677777777777777777777765 2334566666677777777777777777777766532 255666666
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNEN 168 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (605)
..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 667777777777777777666552 223445555555554433
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=3.9e-07 Score=71.09 Aligned_cols=94 Identities=9% Similarity=0.142 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLR 516 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (605)
+..++..+...|++++|++.+++++... +.+...+..++.++...|++++|+..++++.+.. +.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3334444444444444444444444331 2223334444444444444444444444444311 112334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 036303 517 GLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 517 ~~~~~g~~~~A~~~~~~~~~ 536 (605)
++...|++++|...++++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444443
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=3e-07 Score=70.87 Aligned_cols=103 Identities=10% Similarity=-0.047 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMV 550 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 550 (605)
....+..++..+...|++++|+..++++.+ ..| +...+..+..++...|++++|...++++++.. +.+...+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 345677788888889999999999999887 344 56678888888999999999999999988742 22588889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 551 RGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.++...|++++|...++++.+.+|++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999888754
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.70 E-value=2.3e-08 Score=85.87 Aligned_cols=135 Identities=10% Similarity=-0.047 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-----------HVLYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
...+..++..+...|++++|+..|++++...+....... ...+..+..++...|++++|+..++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~- 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK- 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 334556666777777777777777777764321110011 26778888899999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHH-HHHHHHHhc
Q 036303 503 NLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAF-RCSEFLKES 572 (605)
Q Consensus 503 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 572 (605)
..| +...+..+..++...|++++|+..++++++ +.| +..++..++.++...|+.+++. ..++++..+
T Consensus 117 -~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 117 -IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp -HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred -hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345 456888888999999999999999999987 345 6888888999998888888877 455555443
No 158
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=1.6e-07 Score=78.91 Aligned_cols=118 Identities=8% Similarity=0.086 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 036303 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG-LFKNGRI--SNA 453 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 453 (605)
.|++++|...++...... +.+...+..+...|...|++++|...|+++++.. +.+...+..++.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344555555555544432 2244455555555555555555555555555443 3344445555555 4455555 555
Q ss_pred HHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 454 LNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+..+++++... +.+...+..++.++...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-----SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555542 23344455555555555555555555555555
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=3.5e-07 Score=74.03 Aligned_cols=105 Identities=10% Similarity=-0.087 Sum_probs=89.9
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAV 544 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 544 (605)
+.+...+..++..+...|++++|++.|+++.+ ..|+ ...+..+..++...|++++|+..++++++. .| +..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHH
Confidence 34567788888899999999999999999987 5676 467888888999999999999999999874 44 688
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.+..++.+|...|++++|...++++.+.+|++..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 8899999999999999999999999999887653
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=5.6e-07 Score=70.46 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTT 513 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 513 (605)
..+..++..+.+.|++++|+..|++.+... +.+...|..++.++...|++++|+..++++++ +.|+ ...|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 77 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 344555555666666666666666665542 33455566666666666666666666666665 3333 345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+..++...|++++|+..++++++
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHH
Confidence 66666666666666666666654
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=8.7e-07 Score=69.02 Aligned_cols=113 Identities=15% Similarity=0.229 Sum_probs=73.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 399 VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..++++.... +.+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CccHHHHHH
Confidence 3455566666667777777777777776653 4456666677777777777777777777776643 345566667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLL 519 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 519 (605)
++.++...|++++|...++++.+ ..|+ ...+..+..++.
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 77777777777777777777766 3343 334444444443
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=5.4e-07 Score=70.92 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=80.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 399 VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
...+..+...+...|++++|...+++..... +.+...+..++.++...|++++|+..+++.+... +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~ 85 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-----PAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----ccCHHHHHH
Confidence 4455666666777777777777777777654 4456677777777777777788877777777653 344666777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 524 (605)
++.++...|++++|.+.++++.+ ..| +...+..+..++...|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHhcC
Confidence 77777788888888888887776 334 444666666666666553
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.65 E-value=5.9e-08 Score=80.15 Aligned_cols=103 Identities=10% Similarity=-0.010 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CC---------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSD-------NL---------RPD-NCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~---------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
...+...+..+.+.|++++|+..|+++++. +- .|. ...|..+..+|...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556666777777777777777777652 00 232 3478888889999999999999999999
Q ss_pred HCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 536 KMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 536 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
+. .| +..+|..++.+|...|++++|...++++.+++|++.
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 84 45 688999999999999999999999999999998866
No 164
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=5.3e-07 Score=84.35 Aligned_cols=128 Identities=19% Similarity=0.098 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITP--------------SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
.+..+...+...|++++|+..|++.++..... ...++..++.++.+.|++++|+..+++++...
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-- 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 44444455555555555555555555443111 14677788888888888888888888888764
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDV-MMLLADMI 535 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 535 (605)
+.+...|..+..++...|++++|+..|+++++ +.|+ ...+..+..++...|++++| ...+++|.
T Consensus 227 ---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 ---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888887 4554 45777778888888888877 44566665
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.62 E-value=4.3e-07 Score=71.47 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=81.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-c---HHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDN----CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-D---AVINQ 547 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~~~ 547 (605)
+..++..+...|++++|+..|+++.+ ..|+. ..+..+..++...|++++|...++++++.. | + ..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHH
Confidence 34566778889999999999999887 33443 377788889999999999999999998743 3 3 67788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.++.+|...|++++|...++++.+..|++..
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 9999999999999999999999999887543
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.60 E-value=3e-07 Score=72.48 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
.++..+...|++++|+..|++.+... +.+...+..++.++...|++++|+..++++.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD-----PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444444444443321 2223333344444444444444444444443
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=1.5e-06 Score=66.90 Aligned_cols=110 Identities=19% Similarity=0.168 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 512 (605)
...+..++..+...|++++|+..+++.+... +.+...+..++.++...|++++|...++++.+ ..| +...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~ 76 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHH
Confidence 3445566666667777777777777766643 34556666677777777777777777777766 333 345666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.+..++...|++++|...++++++. .| +...+..++.+
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKH--EANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHh
Confidence 7777777777777777777777753 33 45555555443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.8e-06 Score=82.10 Aligned_cols=171 Identities=11% Similarity=-0.026 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-ccHHH
Q 036303 402 FTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSV----FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-PNHVL 475 (605)
Q Consensus 402 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 475 (605)
+..++..|...|++++|...+..+.+.... ++. .+.+.+...+...|++++|+.++..........+.. .-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777766665542101 111 122333344445667777777777665532221112 22445
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC--CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcc--HH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSD--NL--RPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVPD--AV 544 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~ 544 (605)
+..++..+...|++++|..+++++... +. .|. ..++..++..|...|++++|..++++.+.. +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777778888888777776542 11 122 236667777777888888888877776531 11111 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
++..++..+...|++++|...+..+.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5666777777788888887777766654
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=1.2e-07 Score=81.22 Aligned_cols=148 Identities=13% Similarity=-0.001 Sum_probs=88.7
Q ss_pred HHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----------------H
Q 036303 59 IIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADV----------------V 120 (605)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~ 120 (605)
+......|++++|.+.++... .......+..++..+...|++++|...|++.....+. +. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHH
Confidence 334455566666666665431 2223456677778888888888888888888875332 22 5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036303 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC 200 (605)
Q Consensus 121 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 200 (605)
.+..+..++...|++++|+..++..++.. +.+..++..+..++...|++++|...|++..+..+. +...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 66677777777777777777777777663 335667777777777777777777777777665332 4455555555555
Q ss_pred ccCChHHHH
Q 036303 201 KVADVNRAL 209 (605)
Q Consensus 201 ~~~~~~~a~ 209 (605)
..++..++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555544444
No 170
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=6.1e-07 Score=71.97 Aligned_cols=90 Identities=9% Similarity=-0.061 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRG 517 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 517 (605)
.++..+...|++++|+..|++++... +.+...|..+..++...|++++|+..|+++.+ +.|+ +..+..+..+
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-----HYDARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 33334444444444444444444332 22333444444444444444444444444443 2222 2233344444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 036303 518 LLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~ 535 (605)
+...|++++|+..+++++
T Consensus 96 ~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 444444444444444444
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.57 E-value=6.5e-07 Score=73.66 Aligned_cols=140 Identities=10% Similarity=0.011 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-PNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRP-DN 508 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~ 508 (605)
.++..++..+...|++++|+..+++.+......+.. ....++..+...+...|++++|.+.++++.+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 356677778888888888888888877643211000 11246778888999999999999999998762 1111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
..+..+..++...|++++|...++++++. +..+ ...++..++.+|...|++++|...++++.+...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999998752 2122 256788899999999999999999999987643
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=7.8e-07 Score=70.81 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHH
Q 036303 432 PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCT 510 (605)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 510 (605)
.+...+..++..+...|++++|+..|.+.+... +.+...|..++.++...|++++|+..++++.+ ..|+ ...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 79 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKA 79 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHH
Confidence 345566666666677777777777777666653 34456666677777777777777777777766 3333 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+..+..++...|++++|...++++++
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666777777777777777777664
No 173
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=1.3e-06 Score=72.06 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTY 511 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 511 (605)
+...+..++..+...|++++|+..|++++... +.+...|..+..++...|++++|+..++++++ +.|+ ...|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 82 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 45567777788888888888888888888763 44677788888888888888888888888887 4454 5578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+..++...|++++|+..++++++
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888888888888888886
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.53 E-value=1.8e-07 Score=87.57 Aligned_cols=101 Identities=10% Similarity=-0.088 Sum_probs=51.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.|..+..++...|++++|+..++++++ +.| +...|..+..+|...|++++|+..|+++++ +.| +..++..+..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 677888889999999999999999988 445 456888889999999999999999998876 445 56677777766
Q ss_pred -HHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 553 -YQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 553 -~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
....+..+++...|+++.+..|++++.
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 445677788888999999988877654
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.51 E-value=2.2e-07 Score=91.38 Aligned_cols=133 Identities=13% Similarity=0.035 Sum_probs=97.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL 518 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (605)
++..+.+.|++++|++.|+++++.. +.+..+|..++.++...|++++|++.++++.+ +.|+ ...+..+..+|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3445567788888888888888763 44577888888888889999999999998888 4454 55788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH--HHhcCChhHHHHHHH-----------HHHhcCCCCCCCCc
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG--YQENGDLKSAFRCSE-----------FLKESRIGSSETEG 581 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~~~~~~~~~ 581 (605)
...|++++|.+.++++++. .| +..++..++.+ +.+.|++++|++.++ ++.+.+|....+..
T Consensus 85 ~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL 159 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccc
Confidence 8899999999999988873 34 45566666666 888899999999888 77777766555543
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=3.4e-06 Score=68.00 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-
Q 036303 432 PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN----HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP- 506 (605)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 506 (605)
.+...+..++..+...|++++|+..|++.+.. .|+ ...+..+..++...|++++|+..++++.+ ..|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~ 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--KDGG 97 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCcc
Confidence 35666777777788888888888888888764 333 56677788888888888888888888877 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHH
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQ 554 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 554 (605)
+...+..+..++...|++++|...++++++ +.| +..++..+..+..
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRNISG 144 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHh
Confidence 455777888888888888888888888887 344 4556555555443
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=1.5e-06 Score=68.38 Aligned_cols=113 Identities=10% Similarity=0.103 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc----HHH
Q 036303 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN----HVL 475 (605)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~ 475 (605)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|+..+++++...+.. .++ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHHH
Confidence 456667777888888888888888887764 5567778888888888888888888888887753210 111 556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRG 517 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (605)
+..++.++...|++++|.+.|+++.+ ..|+......+..+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 77777888888888888888888877 45665555444443
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.50 E-value=1.3e-06 Score=66.49 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=51.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA--DVVTYGVLI 126 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 126 (605)
++..+..++..+...|++++|...|+++ ..+.+..++..++..+...|++++|...|++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3444555555555566666666555554 123344555555555555555555555555555542 22 344555555
Q ss_pred HHHHcc-CChhHHHHHHHHHHhC
Q 036303 127 DCCCGQ-GDVMKALNLFDEMIDK 148 (605)
Q Consensus 127 ~~~~~~-g~~~~a~~~~~~~~~~ 148 (605)
.++... |++++|.+.++.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555544
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=1.7e-07 Score=72.33 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHH
Q 036303 486 DGQILKASKLFSDMRSDNL-RPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSA 562 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 562 (605)
.|++++|+..|+++++.+. .|+ ...+..+..+|...|++++|+..++++++. .| +..++..++.+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666677777777766210 132 335666666777777777777777777663 33 466667777777777777777
Q ss_pred HHHHHHHHhcCCCCC
Q 036303 563 FRCSEFLKESRIGSS 577 (605)
Q Consensus 563 ~~~~~~~~~~~~~~~ 577 (605)
...++++.+..|+++
T Consensus 81 ~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 81 VELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCcH
Confidence 777777777766554
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=1.5e-06 Score=67.27 Aligned_cols=88 Identities=10% Similarity=0.023 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLL 519 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 519 (605)
+..+.+.|++++|+..|++++... +.+...|..+..++...|++++|+..|+++++ +.|+ ...+..+..++.
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-----PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 334444444444444444444432 22344444444444444444444444444444 2232 224444444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 036303 520 RAKRMLDVMMLLADMI 535 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~ 535 (605)
..|++++|+..+++++
T Consensus 97 ~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 97 NEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444444
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=1.9e-06 Score=70.87 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-H-HHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-A-VINQV 548 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~ 548 (605)
+...|..+..+|...|++++|+..++++++ +.|+ ...|..+..++...|++++|...++++++ +.|+ . .+...
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~ 137 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVARE 137 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 456778888889999999999999999888 4454 55888888899999999999999999887 4564 4 44444
Q ss_pred HHHHH
Q 036303 549 MVRGY 553 (605)
Q Consensus 549 l~~~~ 553 (605)
+..+.
T Consensus 138 l~~~~ 142 (162)
T 3rkv_A 138 MKIVT 142 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.4e-05 Score=77.98 Aligned_cols=201 Identities=13% Similarity=0.045 Sum_probs=106.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcC
Q 036303 301 IKGLCGVGQLEGAEGLLQKMYKEGILAN----------------VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV-EPN 363 (605)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 363 (605)
...+...|++++|++.+..+.+...... ...+..++..|...|++++|.+.+..+..... .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456677888888888888777542211 12355666677777777777777766554310 111
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 036303 364 VV----TFSSLIDGQCKAGNIDAAMGLYTEMVIK----SLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEA--KI-- 430 (605)
Q Consensus 364 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 430 (605)
.. +.+.+...+...|+++.|..++...... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1222223333456666666666655432 1111 2334555666666666666666666665432 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 431 -TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 431 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+....++..++..|...|++++|..+++++.......+.++. ...+..++..+...|++++|...|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111334555666666666666666666666654322211222 12344445555566666666666666554
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.44 E-value=1.6e-06 Score=84.98 Aligned_cols=133 Identities=10% Similarity=-0.018 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC----------CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY----------CSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
...+..++..+.+.|++++|+..|++++...+... .+.....|..+..+|.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-- 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 33455566666666666666666666665431100 001156788889999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 036303 504 LRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFR-CSEFLK 570 (605)
Q Consensus 504 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 570 (605)
+.| +...|..+..+|...|++++|+..|+++++ +.| +..++..++.++.+.|++++|.+ .++++.
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 455888899999999999999999999987 456 57788899999999999988875 444443
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=2.6e-06 Score=80.58 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHH
Q 036303 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQV 548 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 548 (605)
.+...|..+..++.+.|++++|++.++++++ +.|+ ...+..+..+|...|++++|+..++++++ +.| +..++..
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~ 346 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 3456778888888888999999999988887 4454 55788888888888999999999888887 345 5778888
Q ss_pred HHHHHHhcCChhHHHH
Q 036303 549 MVRGYQENGDLKSAFR 564 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~ 564 (605)
+..++...++.+++.+
T Consensus 347 l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777765
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=1.6e-06 Score=69.01 Aligned_cols=99 Identities=11% Similarity=-0.029 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC-------CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGG-------YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNL---- 504 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 504 (605)
.+...+..+.+.|++++|+..|++++...+.. ..+.+...|..+..++...|++++|+..++++++ +
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhcc
Confidence 34455556666777777777777766653210 0011234888999999999999999999999988 5
Q ss_pred ---CCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 505 ---RPDNC-TY----TTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 505 ---~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.|+.. .| .....++...|++++|+..|+++++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78765 77 8899999999999999999999987
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.38 E-value=2.8e-06 Score=69.80 Aligned_cols=136 Identities=10% Similarity=-0.038 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PS----VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHV 474 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 474 (605)
++..+...+...|++++|...+++.++.... ++ ..++..++..+...|++++|+..+++.+......+.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555566666666666666665542100 11 13556667777777777777777777665432111111 134
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+..+..++...|++++|.+.++++.+. +..+. ...+..+...+...|++++|...++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777788888888888888877652 11111 23667777888888899999888888765
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=7.3e-06 Score=82.02 Aligned_cols=160 Identities=8% Similarity=-0.122 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHH
Q 036303 414 NMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGR----------ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQAL 483 (605)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (605)
..++|+..+++++..+ +.+..+|+.-..++...|+ ++++++.+++++... +.+..+|..-..++
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-----pK~y~aW~hR~w~l 117 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-----PKSYGTWHHRCWLL 117 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 3456677777777765 4456666666666666665 777788887777764 55677777777777
Q ss_pred HccC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhc--
Q 036303 484 CYDG--QILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAK-RMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQEN-- 556 (605)
Q Consensus 484 ~~~g--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-- 556 (605)
.+.| +++++++.++++.+. .| +...|..-..++.+.| .++++++.++++++ ..| +..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSC
T ss_pred HHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhcc
Confidence 7777 668888888887773 33 4557777777777777 77777777777776 334 577777776666653
Q ss_pred ------------CChhHHHHHHHHHHhcCCCCCCCCccc
Q 036303 557 ------------GDLKSAFRCSEFLKESRIGSSETEGHT 583 (605)
Q Consensus 557 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 583 (605)
+.+++|++.++++.+.+|++..+..+.
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 456778888888888888776654443
No 188
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=1.2e-05 Score=62.99 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=27.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+..++.++...|++++|+..++++.+ ..|+ ...+..+..++...|++++|...++++++
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444445555555555554444 2222 22344444444455555555555555443
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.33 E-value=2.7e-05 Score=77.94 Aligned_cols=187 Identities=9% Similarity=-0.056 Sum_probs=139.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN----------MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG 448 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (605)
..++|++.+.+++... +-+...|+.-..++...|+ +++++..++.+++.+ +.+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456677777777663 2244555555555555555 788888898888876 667888888888888888
Q ss_pred --CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc---
Q 036303 449 --RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG-QILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRA--- 521 (605)
Q Consensus 449 --~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 521 (605)
+++++++.++++++.. +.+..+|+.-..++...| .++++++.++++++ ..| |...|.....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d-----~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHhhc-----cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccc
Confidence 6699999999988875 567888888888888888 88899999998887 344 455777777766653
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhH------------HHHHHHHHHhcCCCC
Q 036303 522 -----------KRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKS------------AFRCSEFLKESRIGS 576 (605)
Q Consensus 522 -----------g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~~~~~~~~ 576 (605)
+.++++++.+.+++. +.| +..+|..+...+.+.|+.++ |...|+++.+.+|..
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 567999999999997 456 78899999999999998766 444566666666653
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=2.3e-06 Score=65.80 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 036303 447 NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 525 (605)
.|++++|+..|++++..... -+.+...+..++.++...|++++|++.|+++++ ..|+ ...+..+..++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQ--GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHH
Confidence 57778888888887764100 033456677788888888888888888888887 3444 457777888888888888
Q ss_pred HHHHHHHHHHH
Q 036303 526 DVMMLLADMIK 536 (605)
Q Consensus 526 ~A~~~~~~~~~ 536 (605)
+|+..++++++
T Consensus 79 ~A~~~~~~al~ 89 (117)
T 3k9i_A 79 QGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888876
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=4.9e-06 Score=81.80 Aligned_cols=119 Identities=8% Similarity=0.011 Sum_probs=65.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 372 DGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS 451 (605)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (605)
..+...|++++|.+.|+++++.. +.+...+..+..++...|++++|...+++.++.. +.+..++..++.++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34555666666666666666552 2245566666666666666666666666666654 345556666666666666666
Q ss_pred HHHHHHHHhhhccCCCCCCccHHHHHHHHHH--HHccCCHHHHHHHHH
Q 036303 452 NALNFFLEKTDKTDGGYCSPNHVLYAAIIQA--LCYDGQILKASKLFS 497 (605)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 497 (605)
+|++.|+++++.. +.+...+..+..+ +...|++++|++.++
T Consensus 92 eA~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-----PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-----TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666666542 2222333344333 555566666666665
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.25 E-value=1.5e-05 Score=77.90 Aligned_cols=128 Identities=13% Similarity=0.026 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITP--------------SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
.+..+...+.+.|++++|+..|++.++..... ...++..++.++.+.|++++|+..+++++...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Confidence 34444455555555555555555555432111 14677888888999999999999999988864
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMM-LLADMI 535 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~-~~~~~~ 535 (605)
+.+..+|..+..+|...|++++|+..|+++++ +.|+.. .+..+..++...++.+++.+ .+.+|.
T Consensus 348 ---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 ---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999999999999999999988 566544 77778888888888877654 445454
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.23 E-value=2.7e-06 Score=79.60 Aligned_cols=70 Identities=10% Similarity=-0.048 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCc
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (605)
.|..+..+|.+.|++++|+..++++++. .| +..++..++.+|...|++++|+..++++.+++|++.....
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~ 302 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 7888999999999999999999999984 45 6899999999999999999999999999999998766544
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.20 E-value=1.4e-06 Score=69.07 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=73.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRM----------LDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
+.+.+++|++.++++.+ ..| +...|..+..++...+++ ++|+..|+++++ +.| +..+|..++.+
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 34668889999999888 455 455777788888877654 599999999998 567 58899999999
Q ss_pred HHhcC-----------ChhHHHHHHHHHHhcCCCCC
Q 036303 553 YQENG-----------DLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 553 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~ 577 (605)
|...| ++++|+..|+++.+++|++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99875 89999999999999999864
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.5e-06 Score=66.01 Aligned_cols=93 Identities=8% Similarity=0.095 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-------H
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-------A 543 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~ 543 (605)
+...+..++..+...|++++|++.|+++++ ..| +...+..+..++...|++++|+..++++++ +.|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 456677888889999999999999999887 445 456888888899999999999999999987 4453 6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 544 VINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
.++..++.++...|+++.|...+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 6777888888888877777655443
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=1.5e-05 Score=75.37 Aligned_cols=90 Identities=13% Similarity=0.026 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTY 511 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 511 (605)
+..++..++.++.+.|++++|+..+++++... +.+...+..+..+|...|++++|++.|+++.+ +.|+ ...+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~ 344 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-----PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQ 344 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 45677888888888999999999999888753 44577788888888999999999999998887 4554 4466
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~ 529 (605)
..+..++...++.+++.+
T Consensus 345 ~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 345 AELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666667666666666544
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=7.7e-05 Score=58.98 Aligned_cols=110 Identities=8% Similarity=-0.059 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRM 524 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 524 (605)
++++|++.|++..+.. .++. . +...|...+.+++|.++|+++.+.| ++..+..|...|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-----~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-----EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-----CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-----CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 3455555555555432 1221 1 4444444455555666666665532 44455555555555 5566
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 036303 525 LDVMMLLADMIKMGIVPDAVINQVMVRGYQE----NGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 573 (605)
++|...++++.+.| ++..+..++..|.. .+|+++|..+++++.+.+
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666666543 45555666666666 666666666666666654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=2.2e-05 Score=76.54 Aligned_cols=135 Identities=10% Similarity=0.006 Sum_probs=99.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCC--Cc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCCH-HHHH
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYC--SP-NHVLYAAIIQALCYDGQILKASKLFSDMRS-----DN-LRPDN-CTYT 512 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~~~ 512 (605)
.+..+|++++|+.++++.+......-. .| ...+++.++.+|...|++++|+.+++++++ .| -.|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888877764332111 22 245678888899999999999999988775 12 23443 3788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-c-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIK-----MGIV-P-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.|...|...|++++|..+++++++ .|.. | ...+...+..++...|.+++|...+.++++..-++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~ 469 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ 469 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998864 3422 3 256667888899999999999999999988653333
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.05 E-value=1.1e-05 Score=63.97 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=68.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhccCCCCCCccHHHHHHHH
Q 036303 411 KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRI----------SNALNFFLEKTDKTDGGYCSPNHVLYAAII 480 (605)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (605)
+.+.+++|...++..++.+ +.+...+..++.++...+++ ++|+..|+++++.. +.+..+|..++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-----P~~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-----PKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-----cCcHHHHHHHH
Confidence 3445667777777777665 55666777666666666553 58888888887753 34567777888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 481 QALCYD-----------GQILKASKLFSDMRSDNLRPDNCTYTTMLRG 517 (605)
Q Consensus 481 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (605)
.+|... |++++|++.|+++++ +.|+...|...+..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 888766 478888888888888 67877666554443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.05 E-value=1.2e-05 Score=61.38 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 491 KASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 491 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+|+..|+++.+ ..| +...+..+..++...|++++|+..++++++. .| +...+..++.+|...|++++|...+++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666777766 334 3456777777777778888888888777763 34 466777777788888888888888888
Q ss_pred HHhcCCCCC
Q 036303 569 LKESRIGSS 577 (605)
Q Consensus 569 ~~~~~~~~~ 577 (605)
+.+..|...
T Consensus 79 al~~~~~~~ 87 (115)
T 2kat_A 79 GLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHT
T ss_pred HHHhccccc
Confidence 777766543
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.03 E-value=0.00015 Score=57.28 Aligned_cols=111 Identities=10% Similarity=0.021 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc----cCC
Q 036303 413 GNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY----DGQ 488 (605)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 488 (605)
+++++|...|++..+.+ .++.. +...|...+.+++|++.|++..+. .++..+..+...|.. .++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCcc
Confidence 35566777777766665 33332 555555556666677777776653 345556666666665 667
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 538 (605)
+++|.++|+++.+.| ++..+..|...|.. .+++++|...++++.+.|
T Consensus 77 ~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 77 LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777777777643 45556666667766 677777777777777655
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=2e-05 Score=76.76 Aligned_cols=128 Identities=11% Similarity=-0.026 Sum_probs=75.6
Q ss_pred HhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc------
Q 036303 5 LANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI------ 78 (605)
Q Consensus 5 ~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------ 78 (605)
+..+|+|.+|..+++..+....+.-.+. ++.-..+++.|+.+|..+|++++|..+++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~---------------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADT---------------NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTT---------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665332222222 2223446788999999999999999888765
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC-C-CHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 79 ---EVLP-AIQACNALLNGLIKKGKFDSVWEFYEEMVLC-----GLV-A-DVVTYGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 79 ---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
+..| ...+++.|+..|..+|++++|..++++.... |.. | ...+...+..++...+.++.|+.++..+.+
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 2356677777777777777777777765532 221 1 112334444555555666666666665543
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=8e-05 Score=53.74 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
+...+..+...+...|++++|+..++++.+ ..| +...+..+..++...|++++|...++++++. .| +...+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 345566666777777777777777777766 233 3446667777777777777777777777763 33 46666666
Q ss_pred HHHHHhcC
Q 036303 550 VRGYQENG 557 (605)
Q Consensus 550 ~~~~~~~g 557 (605)
+.++.+.|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 66665543
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=4.3e-05 Score=57.78 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----- 507 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----- 507 (605)
+...+..++..+...|++++|+..|++++... +.+...+..++.++...|++++|++.++++++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHH
Confidence 34566677777777888888888888777753 44567777778888888888888888888876 4555
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHH
Q 036303 508 --NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 508 --~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
...+..+..++...|+.+.|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHh
Confidence 3345555555555555554443
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.90 E-value=8.9e-05 Score=53.47 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 505 RPDNCTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++++..+..+..++...++ .++|..+++++++ ..| +......++..+.+.|++++|+..|+++.+.+|+ .++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4566778888888765544 6899999999987 456 5888888999999999999999999999999988 555
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.89 E-value=3.4e-05 Score=58.87 Aligned_cols=78 Identities=8% Similarity=-0.019 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 036303 452 NALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
+|+..|++.+... +.+...+..++.++...|++++|+..++++++ ..|+ ...|..+..++...|++++|...
T Consensus 3 ~a~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 3 AITERLEAMLAQG-----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CHHHHHHHHHTTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566666666543 34566677777777777777777777777776 3343 44666777777777777777777
Q ss_pred HHHHHH
Q 036303 531 LADMIK 536 (605)
Q Consensus 531 ~~~~~~ 536 (605)
++++++
T Consensus 76 ~~~al~ 81 (115)
T 2kat_A 76 WESGLA 81 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=2.6e-05 Score=57.74 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+...+..++.++...|++++|++.|+++++ ..|+ ...|..+..+|...|++++|+..++++++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555566666666666666666555 2332 33555555556566666666666655554
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=0.00011 Score=52.88 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
..+..++..+...|++++|+..|++. ..+.+..++..+..++.+.|++++|...|++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444555555555555555555544 12233444444455555555555555555554443
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.78 E-value=6.9e-08 Score=89.29 Aligned_cols=426 Identities=12% Similarity=0.088 Sum_probs=221.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
..|.+|..|+.+..+.|++.+|++.|-+..++ ..|..++.+..+.|.+++-+..+.-..+. .-++.+=+.|+-+|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dp---s~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP---SSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCC---CSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCCCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 46788999999999999999999888777543 34778889999999999999888766554 23556667889999
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
++.++..+-.+++. .|+..-...+..-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 99998776544322 35666667788888888888888766654432 233334444555555554
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE 289 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 289 (605)
+.-++ ..++.||..+..+|...+.+..|...--.++-.. + -...++..|...|.+++.+.+++.-....
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 43221 2244555555555555555554443333332111 0 01123334445555555555555544321
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHH----------
Q 036303 290 ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE-GILA------NVVTYNSLIDGYCKEGDMEKALSVC---------- 352 (605)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~---------- 352 (605)
......|+-|.-.|++- ++++..+.++..... +++- ....|.-++-.|..-.+++.|....
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h 337 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 337 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCG
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccH
Confidence 23344444444444433 233333333221111 1110 0112333333344333333332211
Q ss_pred ---HHHhhCCCCcCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHC----------CCCCCHhhHHH
Q 036303 353 ---SQMTEKGVEPNVVTFSS---------------LIDGQCKAGNIDAAMGLYTEMVIK----------SLVPDVVVFTA 404 (605)
Q Consensus 353 ---~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~ 404 (605)
.++..+ ..|...|.. |+.++...=|..++.+++++.-.. .-..+...-.+
T Consensus 338 ~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeA 415 (624)
T 3lvg_A 338 GQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNES 415 (624)
T ss_dssp GGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHH
T ss_pred HHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHH
Confidence 000000 012222222 222222222333333333321100 00112233334
Q ss_pred HHHHHHhcCCHHHHHH------------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc
Q 036303 405 LIDGLSKDGNMKETLR------------LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN 472 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 472 (605)
+-..|....+++.-.. +-+++.+ .+-...-..-...|.+.++|++++.+..+-
T Consensus 416 ln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkD------------ 480 (624)
T 3lvg_A 416 LNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK---HELIEFRRIAAYLFKGNNRWKQSVELCKKD------------ 480 (624)
T ss_dssp HHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTT------------
T ss_pred HHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh---CchHHHHHHHHHHHHhcccHHHHHHHHHhc------------
Confidence 4445666666554322 2222222 122333333445567777888877654221
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
..|...+.....+|+.+-|.++++-.++.| +...|...+-+|...=+++-++++
T Consensus 481 -klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 481 -SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp -CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred -ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 122333445567788888888888887643 556777777788777777776654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.73 E-value=0.00038 Score=63.75 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 505 RPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+.++.++..+...+...|++++|...+++++.. .|+...|..++.++.-.|++++|...++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 445667777777777789999999999999985 4777788888999999999999999999999998865
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.69 E-value=9.8e-05 Score=54.51 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+...+..+..++...|++++|+..++++++. .| +..+|..++.+|...|++++|...++++.++.|....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 4557778888888888888888888888873 34 5778888888888888888888888888887665443
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.67 E-value=0.00025 Score=55.57 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCChhHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK---RMLDVMMLLADMIKMGIVP--DAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
...+.+.|.+..+.+. ++..+...+.+++.+.+ +.++++.+++...+.. .| ....+..++-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3456666666665443 67778888888888887 6668999999888743 24 4778888888999999999999
Q ss_pred HHHHHHHhcCCCCCCC
Q 036303 564 RCSEFLKESRIGSSET 579 (605)
Q Consensus 564 ~~~~~~~~~~~~~~~~ 579 (605)
++++++++.+|++..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999876543
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.60 E-value=0.00014 Score=69.55 Aligned_cols=87 Identities=7% Similarity=-0.115 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHh---CCCCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCcc-HHHHHHHHH
Q 036303 486 DGQILKASKLFSDMRS---DNLRP---DN-CTYTTMLRGLLRAKRMLDVMMLLADMIK-----MG-IVPD-AVINQVMVR 551 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~---~~~~p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~-~~~~~~l~~ 551 (605)
.|++++|+.++++.++ .-+.| +. .+++.|+.+|...|++++|..+++++++ .| -.|+ ...++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677788887777665 11223 22 3777888888888888888888888764 23 2233 667788888
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 036303 552 GYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 552 ~~~~~g~~~~A~~~~~~~~~~ 572 (605)
+|..+|++++|...++++.+.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 888888888888888888775
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.60 E-value=0.00011 Score=54.02 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=56.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRP-DNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
.+..+...|++++|++.++++.+ ..| +.. .+..+..++...|++++|+..++++++. .| +..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 34456667777777777777776 334 345 6667777777777777777777777763 34 2333311
Q ss_pred cCChhHHHHHHHHHHhcCCCCCC
Q 036303 556 NGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+.+.+|...++++.+.+|+++.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCCSS
T ss_pred -HHHHHHHHHHHHHhccCccccc
Confidence 4566677777777666665543
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.56 E-value=0.0022 Score=58.74 Aligned_cols=75 Identities=7% Similarity=-0.067 Sum_probs=59.9
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQV 548 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (605)
+.++.++..+...+...|++++|+..+++++.. .|+...|..+...+.-.|++++|.+.+++++. +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 556777777777777789999999999999984 57877777778888889999999999999987 5676655543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.50 E-value=0.00035 Score=51.28 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAV-INQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
..+..+...|++++|+..++++++. .| +.. .+..++.+|...|++++|...++++.+.+|++....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3556778899999999999999974 45 577 999999999999999999999999999999877654
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.45 E-value=0.014 Score=51.08 Aligned_cols=105 Identities=7% Similarity=-0.035 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHHH-Hc--cC------CHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 036303 471 PNHVLYAAIIQAL-CY--DG------QILKASKLFSDMRSDNLRPD---NCTYTTMLRGLLRA-----KRMLDVMMLLAD 533 (605)
Q Consensus 471 ~~~~~~~~l~~~~-~~--~g------~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~ 533 (605)
+....|..++.+- .. .| ....|..+++++++ +.|+ ...|..+...|... |+.++|.+.|++
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 3445566655532 32 23 35788899999998 7787 45788888888874 999999999999
Q ss_pred HHHCCCCc--cHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCCC
Q 036303 534 MIKMGIVP--DAVINQVMVRGYQEN-GDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 534 ~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+++ +.| +..++..+++.++.. |+.++|.+.++++.+.+|...|.
T Consensus 230 AL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 230 LTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 998 556 488999999999885 99999999999999999886444
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.43 E-value=0.00048 Score=66.10 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=69.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCcc-HHH
Q 036303 480 IQALCYDGQILKASKLFSDMRSD---NLRPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIK-----MG-IVPD-AVI 545 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~-~~~ 545 (605)
+.-+...|++++|+.+++++++. -+.|+ ..+++.++.+|...|++++|+.+++++++ .| -.|+ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455678899999999888762 12333 23788888889899999999999888864 23 2232 667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
+..++.+|..+|++++|...++++.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 888999999999999999999988875
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.35 E-value=0.0014 Score=48.51 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIKMG------IVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
...++..+...|++..|...++.+++.. -.+...++..++.+|.+.|++++|...++++.+.+|++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3345555555555555555555554320 1123556666666666666666666666666666666543
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.0011 Score=63.56 Aligned_cols=60 Identities=12% Similarity=-0.123 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKI---------EVLPA-IQACNALLNGLIKKGKFDSVWEFYEEMVL 112 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 112 (605)
.+++.++.+|..+|++++|..+++++ +..|+ ..+++.|+..|..+|++++|..+|++...
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34677788888888888888877655 12222 34566677777777777777777666543
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.12 E-value=0.0052 Score=58.93 Aligned_cols=96 Identities=10% Similarity=-0.044 Sum_probs=72.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCC---ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCCH-HH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCS---PNHVLYAAIIQALCYDGQILKASKLFSDMRSD-----N-LRPDN-CT 510 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~ 510 (605)
+..+...|++++|+.++++.+......-.+ ....+++.++.+|...|++++|+.+++++++- | ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344567789999999999887654322112 22456788899999999999999999988751 2 23443 37
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998864
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.11 E-value=0.0026 Score=47.76 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCChhHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLD---VMMLLADMIKMGIVP--DAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
...+.+.|.+....|. |+..+-..+.+++.+...... ++.+++...+.+ .| .......++-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 4445556655554333 677777788888888776665 888888877643 24 4667778888999999999999
Q ss_pred HHHHHHHhcCCCCCCC
Q 036303 564 RCSEFLKESRIGSSET 579 (605)
Q Consensus 564 ~~~~~~~~~~~~~~~~ 579 (605)
+.++.+++..|++..+
T Consensus 95 ~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCCCCHHH
Confidence 9999999988876543
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.09 E-value=0.0032 Score=45.21 Aligned_cols=64 Identities=6% Similarity=0.010 Sum_probs=31.9
Q ss_pred CCHHhHHHHHHHHHhcCC---hHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 50 FNPSVFSTLIIAFSEMGH---IEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
.++..+..++.++...++ .++|..++++. ..+.+..+...++..+.+.|++++|+..|+++...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555443333 45555555544 24444455555555555555555555555555544
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.99 E-value=0.013 Score=45.90 Aligned_cols=84 Identities=15% Similarity=0.042 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhccCCCCCCc--cHHHHHHHHHHHHccCCHHH
Q 036303 417 ETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG---RISNALNFFLEKTDKTDGGYCSP--NHVLYAAIIQALCYDGQILK 491 (605)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 491 (605)
.+.+-|.+....+ +++..+...+..++.+.+ +.++++.++++..+.. .| +...+-.+.-++.+.|++++
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHccCHHH
Confidence 3444455444444 356666666666666666 4456666666666642 13 24444555566666677777
Q ss_pred HHHHHHHHHhCCCCCCH
Q 036303 492 ASKLFSDMRSDNLRPDN 508 (605)
Q Consensus 492 A~~~~~~~~~~~~~p~~ 508 (605)
|.+.++.+++ +.|+.
T Consensus 90 A~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 90 ALKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHh--cCCCC
Confidence 7777776666 55644
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.99 E-value=0.0027 Score=48.81 Aligned_cols=105 Identities=13% Similarity=0.001 Sum_probs=54.1
Q ss_pred ccHHHHHHHHHHHHccCCH------HHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHHC
Q 036303 471 PNHVLYAAIIQALCYDGQI------LKASKLFSDMRSDNLRPDNC-TYTTMLR------GLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~ 537 (605)
.|..+|-..+...-+.|++ ++.+++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444454444444444555 555555555554 2344321 1111111 112335666666666666543
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 538 GIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 538 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.-.- +.+|...+..=.++|+.+.|++++.++..+.|.+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 2111 66666666666666777777777777666665543
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.72 E-value=0.018 Score=44.29 Aligned_cols=106 Identities=12% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHH-hHHHHHH------HHHccCChhHHHHHHHHHH
Q 036303 80 VLPAIQACNALLNGLIKKGKF------DSVWEFYEEMVLCGLVADVV-TYGVLID------CCCGQGDVMKALNLFDEMI 146 (605)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~ 146 (605)
.+.+.++|-..+..+.+.|+. ++.+++|++.... ++|+.. .|...+. .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345556666666666666666 6666666666654 344321 1111111 1123367777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 147 DKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVP 187 (605)
Q Consensus 147 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 187 (605)
+.+-.- ...|......-.+.|++..|.+++...+..++.|
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 553222 5566666666667777777777777777766553
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.68 E-value=0.02 Score=42.15 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC--CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG--YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN 508 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (605)
+..-+..++..+.+.|++..|...|+.+++..... ...+....+..+..++.+.|++++|...++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 33444555566666666666666666655543211 0123445556666666666666666666666665 44543
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.57 E-value=0.065 Score=40.99 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 505 RPDNCTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.|+..+-..+.+++.+..+ ..+++.+++...+.+..-.......++-++.+.|++++|+++.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 5777777788888887764 45688888888864322246777888889999999999999999999998887543
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.52 E-value=0.38 Score=42.26 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc-CCh
Q 036303 135 VMKALNLFDEMIDKGIEPT---VVIYTILIHGLCNE-----NKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV-ADV 205 (605)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~ 205 (605)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46778888888876 455 55888888888884 89999999999998865433477788888888884 889
Q ss_pred HHHHHHHHHHHhCCCC
Q 036303 206 NRALEFYHEMLHHNLQ 221 (605)
Q Consensus 206 ~~a~~~~~~~~~~~~~ 221 (605)
+.+.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999998886443
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.49 E-value=0.034 Score=41.91 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 503 NLRPDNCTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+-.|+..+-..+.+++.+..+ ..+++.+++...+.+..-....+..++-++.+.|++++|+++.+.+++..|++..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 345777777788888887765 45688888888864411247778888999999999999999999999998887644
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.42 E-value=3.7e-05 Score=71.60 Aligned_cols=265 Identities=17% Similarity=0.131 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHG 163 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (605)
+..|..++.+....+...+|++.|-+ . .|+..|..++....+.|.+++-...+....+.. .++.+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 34566666666666666666554421 1 255566666666666677776666666555442 233333556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 036303 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAA 243 (605)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 243 (605)
|++.++..+..+.+ . .|+..-...+..-|...|.++.|.-+|..+ .-|..|...+...|++..|
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHH
Confidence 66666654332221 1 245555556666666666666665555322 1233344444555655555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 244 GNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE 323 (605)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 323 (605)
.+.-++ -.++.+|..+..+|...+.+.-|.-.--.+.-+ +| -...++..|...|.+++.+.+++.-...
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 432222 246778999999999999888776554444322 22 2234566788899999999999887743
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCC------cCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 324 GILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK-GVE------PNVVTFSSLIDGQCKAGNIDAAMG 385 (605)
Q Consensus 324 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~~ 385 (605)
. ..-...|+-|.-.|++- ++++..+.++...++ +++ -....|..++-.|.+-.+++.|..
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 45677888888888775 445555555443332 221 123456777777777777776643
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.21 E-value=0.2 Score=53.03 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEK 460 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (605)
+...|..++..+.+.|+++.|.+.|..+
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444555555555555555555555443
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.14 Score=41.22 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=60.3
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHH
Q 036303 60 IAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKAL 139 (605)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 139 (605)
....+.|+++.|+++.+.+ .+...|..+......+|+++-|.+.|.+... +..+.-.|...|+.+...
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3345667777777776665 3456677777777777777777777765432 233344455566666655
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 140 NLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRS 179 (605)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (605)
.+-+.....| -++.-..++...|+++++.++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555544443 133344455556777777666644
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.24 Score=52.45 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 165 CNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4445555555543222 13445555555555555555555555544
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.80 E-value=2.3 Score=44.50 Aligned_cols=269 Identities=11% Similarity=-0.004 Sum_probs=126.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CChhhHHH--HHHH
Q 036303 235 CKVGELRAAGNFFVHMAKFGVFPNIF--VYNCLIDGHCKAGNLFEAMSLCSEMEKFEI--S-----PDVFTYNI--LIKG 303 (605)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~--l~~~ 303 (605)
...|+.+++..+++.....+...+.. .-..+.-+....|...++..++.......- . +....-.. +..+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 34556666665555544311011222 222233344455555567776666554211 0 00111112 2222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVV----TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (605)
+...++ +++...+..+.... +.. .-..+...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred hcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 233333 34555555555432 211 11223334556677777777777666542 1122222233334446778
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVF--TALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFF 457 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 457 (605)
.+.+..+.+.+.... .|....- ..+.-+|+..|+......++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 887777777766541 2222211 223445677788766666777777632 222332333333444566666666666
Q ss_pred HHhhhccCCCCCCccHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 458 LEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI-LKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
....... .|....-..+.-+....|.. .+++..+..+.. .+|..+-...+.++
T Consensus 618 ~~L~~~~-----d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSKSH-----NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGGCS-----CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHhcC-----CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 5444421 34443333333334444443 567778888764 45554433333333
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.66 Score=37.33 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=46.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 036303 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAA 243 (605)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 243 (605)
..+.|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 344555555555544431 344555555555555555555555554321 23333444445555444
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 244 GNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSE 284 (605)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 284 (605)
.++-+.....| -++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433332 122233334445555555555543
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.45 E-value=0.31 Score=36.57 Aligned_cols=23 Identities=13% Similarity=-0.051 Sum_probs=10.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 036303 479 IIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+.-++.+.|++++|.+.++.+++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.30 E-value=3.4 Score=43.24 Aligned_cols=221 Identities=11% Similarity=0.014 Sum_probs=107.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-------CcCHHHHHHHHHHH
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVV--TYNSLIDGYCKEGDMEKALSVCSQMTEKGV-------EPNVVTFSSLIDGQ 374 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 374 (605)
....|+.++++.++......+...+.. .-..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777776666544321011222 223333344555555567776666554311 01111122222333
Q ss_pred HhcCC-HHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCC
Q 036303 375 CKAGN-IDAAMGLYTEMVIKSLVPDV--VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSL--IHGLFKNGR 449 (605)
Q Consensus 375 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 449 (605)
...|. -+++.+.+..++... .+.. ..-..+...+...|+.+....++..+.+. .+..+...+ .-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence 33332 245566666665542 1111 11123334455667777777777766653 233333333 333446777
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHH--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVL--YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLR--GLLRAKRML 525 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~ 525 (605)
.+.+..+.+.+.... .|.... ..++.-+|+..|+.....++++.+.+. ++..+-...+. +....|+.+
T Consensus 540 ~e~~~~li~~L~~~~-----dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 540 QELADDLITKMLASD-----ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp GGGGHHHHHHHHHCS-----CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCS
T ss_pred hHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHH
Confidence 777777777665431 222221 123445667788877777788887762 23222222222 333456655
Q ss_pred HHHHHHHHHHH
Q 036303 526 DVMMLLADMIK 536 (605)
Q Consensus 526 ~A~~~~~~~~~ 536 (605)
.+.++++.+.+
T Consensus 612 ~v~rlv~~L~~ 622 (963)
T 4ady_A 612 TVPRIVQLLSK 622 (963)
T ss_dssp SHHHHTTTGGG
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.11 E-value=0.76 Score=34.66 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 036303 160 LIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHN 219 (605)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (605)
-+..+...|+-++..++...+... .+|++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444444444444444443221 22333444444444444444444444444444443
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=2.2 Score=40.96 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEA--KITPS---VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVL 475 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~ 475 (605)
..|...+...|++.+|..++..+... +.... ...+..-+..|...+++..|..++.++.........+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666665421 11111 223444455566666666666666655332111111222 123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+...+..+...+++.+|-+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555556666677666666665543
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.08 E-value=0.39 Score=37.95 Aligned_cols=133 Identities=13% Similarity=0.031 Sum_probs=71.5
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc---
Q 036303 2 FYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--- 78 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 78 (605)
++-+..+|.|..|+-+..-++...-...... .+.....++..++.++...|++.+|...|+++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~--------------sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELF--------------SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSS--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccc--------------cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3457778888888877666664321111111 00011235778999999999999999999875
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHH
Q 036303 79 -E-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVI 156 (605)
Q Consensus 79 -~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 156 (605)
. .+.+..+...+. ....... ......+...-..+..|+.+.+++++|+.+++.+... ..+..+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kv 157 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKI 157 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHH
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHH
Confidence 1 111111111110 0000000 0112234555566788888999999999998887554 234444
Q ss_pred HHHHHHH
Q 036303 157 YTILIHG 163 (605)
Q Consensus 157 ~~~l~~~ 163 (605)
-..|.+.
T Consensus 158 nm~LakL 164 (167)
T 3ffl_A 158 NMLLANL 164 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.91 E-value=1.5 Score=33.07 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=29.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGI 539 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 539 (605)
+..+..+..+|+-+.-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++.+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334444445555555555544322 1344444444555555555555555555555555443
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.78 E-value=2 Score=40.39 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=62.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCccHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMI-----KMGIVPDAVINQVM 549 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~l 549 (605)
...++.++...|++.+|+..++.+.. ..| +...+..++.++.+.|+..+|++.|+++. +.|+.|.+.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566778889999999999999887 445 55689999999999999999999998874 36999987766655
Q ss_pred HHHHHh
Q 036303 550 VRGYQE 555 (605)
Q Consensus 550 ~~~~~~ 555 (605)
-.++..
T Consensus 252 ~~il~~ 257 (388)
T 2ff4_A 252 ERILRQ 257 (388)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 555544
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.48 E-value=3 Score=45.83 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 036303 120 VTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTV----VIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNAL 195 (605)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 195 (605)
..|..++..+-+.+.++.+.++-...++...+.+. ..|..+...+...|++++|...+..+..... -......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34666667777777777777766665554211111 2466677777777777777777766665432 23445556
Q ss_pred HHHHhccCChHHHH
Q 036303 196 MDGYCKVADVNRAL 209 (605)
Q Consensus 196 ~~~~~~~~~~~~a~ 209 (605)
+...+..|..+.-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 66666666555443
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.39 E-value=0.77 Score=34.63 Aligned_cols=69 Identities=6% Similarity=-0.004 Sum_probs=45.6
Q ss_pred CccHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 470 SPNHVLYAAIIQALCYDGQI---LKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
.|++.+--.+.++++++.+. .+++.+++.+.+.+ |. ...+-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 45556656666777766543 46777777777633 42 33555666677788888888888887776 5564
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.6 Score=47.68 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
..+...|+++-|+++.+++.. ..|+ -.+|..|+.+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334456666666666666665 4444 346666666666666666666655544
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.56 E-value=2.5 Score=32.35 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 81 LPAIQACNALLNGLIKKGKF---DSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
.++..+-..+..++++..+. .+++.+++.+.+.++.........+.-++.+.|++++|+...+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 36666666666677765543 456677777776543323444555556677777777777777777776
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.52 E-value=3.6 Score=38.42 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=61.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcc----HHHH
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSD--NLRPD---NCTYTTMLRGLLRAKRMLDVMMLLADMIKM--GIVPD----AVIN 546 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~ 546 (605)
.++..|...|++.+|.+++.++.+. ..... ...+..-+..|...+++.++...+..+... .+.++ ..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5677888889999998888887762 11111 124555556777888999988888877531 22233 2333
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHh
Q 036303 547 QVMVRGYQ-ENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 547 ~~l~~~~~-~~g~~~~A~~~~~~~~~ 571 (605)
..-|..+. ..++|.+|...|=.+.+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 44466677 78999999886655543
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.43 E-value=7.9 Score=37.09 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHhhC-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----hcC
Q 036303 343 GDMEKALSVCSQMTEK-----GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLS----KDG 413 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 413 (605)
++++.|++.+-.+.+. +..........++..|...|+++...+.+.-+...... -......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6677777766555431 23445666777888888888888887777655543212 1222233333322 222
Q ss_pred CHHHHHHHHHHHHHC-------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc---HHHHHHHH
Q 036303 414 NMKETLRLYKEMLEA-------KITP---SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN---HVLYAAII 480 (605)
Q Consensus 414 ~~~~a~~~~~~~~~~-------~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~ 480 (605)
..+.... ...+.. .+-. .......|...+...|++.+|.+++.++.....+. .+. ...+..-+
T Consensus 109 ~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 109 SLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--MEMSEKIQFILEQM 184 (445)
T ss_dssp TTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SCHHHHHHHHHHHH
T ss_pred chhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Confidence 2221111 111111 1111 11233456666677777777777777766543211 111 23344555
Q ss_pred HHHHccCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 481 QALCYDGQILKASKLFSDMRS----DNLRPDN--CTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
+.|...+++..|..+++++.. ....|+. ..+...+..+...+++.+|.+.|..+.
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666677777777777766532 1111221 134444555556667776666665554
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.49 E-value=1.1 Score=35.34 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 541 PDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
++.++-..++.+|.+.|++++|+..++.+
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 35677888999999999999999987765
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.13 E-value=1 Score=38.94 Aligned_cols=119 Identities=15% Similarity=0.240 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHH
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC----TYTTMLRGL 518 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~ 518 (605)
...+.|++++|+......++.. +.|...-..++..++-.|+++.|.+-++.+.+ +.|+.. .|..++.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-----P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-----PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHHH
Confidence 3567788889988888888764 56666677888888889999999999888887 556544 334444332
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCc-----cHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVP-----DAVINQVMVRG--YQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
. .=++...-+-.| ...-...++.+ ....|+.++|...-+.+.+..|....
T Consensus 79 ~----------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 Q----------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp H----------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred H----------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1 111112211122 12233344444 44569999999999999888776554
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.03 E-value=0.89 Score=46.45 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC-hhHHHHHHHHHHhC------CCCC-CH----
Q 036303 88 NALLNGLIKKGK-FDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGD-VMKALNLFDEMIDK------GIEP-TV---- 154 (605)
Q Consensus 88 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~------~~~~-~~---- 154 (605)
..++..+...++ .+.|..+|+++....+..+......++..+...++ --+|.+++.+.++. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344444445555 46788888888776332222222233333322221 22344444443321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 155 ------VIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 155 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
.....=...+...|+++-|+++-++....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11122234455678888888888777765322 4567888888888888888888777765
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.75 E-value=3.7 Score=45.10 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTT 513 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (605)
-|..++..+.+.|.++.++++...++...... .++ ...|..+..++...|++++|...+-.+.... --...+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~--~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~ 976 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETD--DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC--CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHH
Confidence 35566666777777777777777766543211 111 2256777777788888888877777666532 23446666
Q ss_pred HHHHHHhcCCH------------HHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCChhHHHH-HHHHHHhcC
Q 036303 514 MLRGLLRAKRM------------LDVMMLLADMIKMG--IVPDAVINQVMVRGYQENGDLKSAFR-CSEFLKESR 573 (605)
Q Consensus 514 l~~~~~~~g~~------------~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~ 573 (605)
|+..++..|.. ++..+++..-.+.. +...+..|..|-.-+...||+..|.. .|+++.+++
T Consensus 977 LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp HHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhh
Confidence 66666554443 33333333222111 11123344544444556677776665 677766653
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.67 E-value=11 Score=35.21 Aligned_cols=166 Identities=13% Similarity=0.006 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC---hhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--
Q 036303 260 FVYNCLIDGHCKAGNLFEAMSLCSEMEKF-EISPD---VFTYNILIKGLCGV-GQLEGAEGLLQKMYKEGILANVVTY-- 332 (605)
Q Consensus 260 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~-- 332 (605)
.....+...|.+.|+.++..+++...... +..+- ......++..+... +..+.-.++..+..+..- .+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35566888888899988888888776431 00111 12234555555443 223333333333322100 011112
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhh
Q 036303 333 ----NSLIDGYCKEGDMEKALSVCSQMTEK--GVEPN---VVTFSSLIDGQCKAGNIDAAMGLYTEMVIK--SLVPDVVV 401 (605)
Q Consensus 333 ----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 401 (605)
..++..|...|++.+|.+++.++.+. ..... ...+..-+..|...+++..+...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 24566666777777776666666543 11111 123344455566666666666666655432 11122222
Q ss_pred HHH--H--HHHHH-hcCCHHHHHHHHHHHH
Q 036303 402 FTA--L--IDGLS-KDGNMKETLRLYKEML 426 (605)
Q Consensus 402 ~~~--l--~~~~~-~~g~~~~a~~~~~~~~ 426 (605)
... . +..+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 211 1 12234 5666666666555543
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.11 E-value=2.2 Score=40.16 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS-----DNLRPDNCTY 511 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 511 (605)
...++..+...|++++++..+...+... +.+...+..++.++.+.|+..+|++.|+++.+ .|+.|.+.+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-----P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666778888888888888887764 56777888889999999999999998888754 4888887753
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.76 E-value=2.7 Score=29.74 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVM 549 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 549 (605)
+.=+..+-++.+....+.|++.+....+.+|.+.+++..|.++++-.... ..+...+|..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~ 85 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYV 85 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHH
Confidence 45566666666666667777777777777777777777777777765532 22234445544
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.15 E-value=11 Score=31.04 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 036303 470 SPNHVLYAAIIQALCY--DGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAV 544 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 544 (605)
..|+......+..--. .+...++..+|..|...|+.-.. ..|...+..+...|++++|.++++..++.+-.|-..
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 5555544444433222 44577999999999988776654 478888888889999999999999999888888443
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.80 E-value=17 Score=32.55 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHHhHHHHHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEF----YEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
.|..+..-|.+++++++|++++..- ...+.+.|+...|.++ .+.+.+.+.+++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3555666677777777777764422 2233344444444332 34444445566666666666555
Q ss_pred HccCChh-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 130 CGQGDVM-KALNLFDEMI----DKG--IEPTVVIYTILIHGLCNENKMVEAESMFR 178 (605)
Q Consensus 130 ~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 178 (605)
.....-+ .=.++++.++ +.| ..-++..+..+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4432111 1122333332 121 12356677777777777777777776653
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.83 E-value=9.6 Score=31.30 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 521 AKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.+...++..+|.-|...|+-- -+..|...+..+...|++.+|..+|+..++.+-.+.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444779999999999877655 488899999999999999999999999999765443
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.44 E-value=23 Score=31.97 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCCHHhHHHHHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFY----EEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
.|..+..-|.+++++++|++++-. -...+.+.|+...|.++- +-+.+.+++++......++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 455666678888888888887542 233444556655554443 4555566777777777777776
Q ss_pred HccCChh-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 130 CGQGDVM-KALNLFDEMID----KG--IEPTVVIYTILIHGLCNENKMVEAESMF 177 (605)
Q Consensus 130 ~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (605)
.....-+ .=..+++.+++ .| ..-|+.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6554321 11223333322 12 2346777788888888888888887776
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.33 E-value=9 Score=27.18 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
|.=+..+-+..+....+.|++.+.....++|.+.+|+.-|.++++-++.+-.+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~ 78 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 78 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 334556666667777788888888888888888888888888888888765444
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.28 E-value=23 Score=31.93 Aligned_cols=171 Identities=14% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLY----KEMLEAKITPSVFTVSSLI 441 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 441 (605)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...+.++. +-..+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34555666888888888887764332 2244556655554443 4445567888988888888
Q ss_pred HHHHhcCCHH-HHHHHHHHhhhccCC--CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 442 HGLFKNGRIS-NALNFFLEKTDKTDG--GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 442 ~~~~~~g~~~-~A~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
..+.....-+ +=.++.+++++.... ....-|+..-..+...|.+.+++.+|...| +. |-.++...+..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHHHHH
Confidence 8887776432 224444555543321 112344555567778888888888888877 22 2333335665555444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHH-HHHHHHHhcCChhHHHHHHHHHHh
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVPDAVINQ-VMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
...+.. .+...|. ..+--|...|+...|..+++...+
T Consensus 178 ~~~~~~----------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDES----------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCG----------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCC----------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333321 1233332 233457788999999887766554
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.19 E-value=40 Score=33.78 Aligned_cols=51 Identities=12% Similarity=-0.033 Sum_probs=31.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 515 LRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+..+...|....|...|..+.+. . +..-...++......|.++.++....+
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 34455677888887777766642 2 233334556666677777777655543
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.10 E-value=3.1 Score=35.99 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=36.9
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 482 ALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
...+.|.+++|++....-++.. +-|...-..|++.++-.|+|+.|.+-++-+.+ +.|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCch
Confidence 3456677777777776666631 22444555666777777777777777776666 3454
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.38 E-value=5.8 Score=29.87 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
|.=+..+-++.+...++.|++.+....+.+|.+.+|+..|.++++-..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555555556666666666666666666666666665544
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=80.35 E-value=7.1 Score=30.40 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 527 VMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 527 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
+..+|.-|...|+-- -+..|...+..+...|++++|..+|+..++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 455555555555433 35555566666666666666666666666543
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.90 E-value=20 Score=34.14 Aligned_cols=97 Identities=10% Similarity=-0.092 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCCHHH--HH
Q 036303 86 ACNALLNGLIKKGKFDSVWEFYEEMVLCGL--VADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK---GIEPTVVI--YT 158 (605)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~--~~ 158 (605)
+...++..+.+.|+++.|.+.|.++...-. ..-...+...++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455667777777777777777777765422 223445666677777777777777777766432 22222111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 159 ILIHGLCNENKMVEAESMFRSMRE 182 (605)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~ 182 (605)
.-+..+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223456777777777766544
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.59 E-value=23 Score=27.56 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=53.5
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVI 545 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 545 (605)
..|+......+..--.. +++.++|..|...|+.-... .|......+...|++++|.++++..++.+-.|-...
T Consensus 65 knD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp TTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 55665544444332222 34889999999988876544 788888888899999999999999999888885443
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.13 E-value=17 Score=34.56 Aligned_cols=61 Identities=10% Similarity=-0.026 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSL--VPDVVVFTALIDGLSKDGNMKETLRLYKEML 426 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 426 (605)
+...++..|.+.|+++.|.+.|.++..... ..-...+...++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555566666666666666665554311 1122344445555555555555555555543
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.00 E-value=41 Score=30.10 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=63.6
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhhhccCCC--CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 036303 427 EAKITPSVFTVSSLIHGLFKNGRIS-NALNFFLEKTDKTDGG--YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
+.+++++......++..+......+ +=.++.+++++..... ....++.....++..|.+.|++.+|...|=. +
T Consensus 85 ~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~ 160 (312)
T 2wpv_A 85 LAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----G 160 (312)
T ss_dssp HTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----S
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----C
Confidence 3455555555555555443322111 1233333333322111 1134556666778888888888888887641 1
Q ss_pred CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCccHHHH-HHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 504 LRPDNCTYTTMLRGLLRA---KRMLDVMMLLADMIKMGIVPDAVIN-QVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 504 ~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
-.-+...+..++.-+... |...+ ...| ...+--|...|+...|..+++...+.
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e----------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDST----------------VAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHH----------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcch----------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111344555555444333 33322 2222 12223466788888888888866543
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.47 E-value=24 Score=26.67 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+..+-+..+....+.|++.+.....++|.+.+|+.-|.++++-++.+-.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~ 121 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 121 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence 445556666677788888888888888888888888888888888765443
No 272
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=75.14 E-value=28 Score=31.03 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=14.2
Q ss_pred HHhcCCHHHHHHHHHHhhhc
Q 036303 444 LFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~ 463 (605)
+...|++++|+..|+.++..
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 45677888888888776653
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.06 E-value=31 Score=27.29 Aligned_cols=72 Identities=6% Similarity=0.008 Sum_probs=49.2
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAV 544 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 544 (605)
..|+......+..--.. +.+..+|..|...|+.-... .|...+..+...|++.+|.+++...++.+-.|-..
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 45555444444322222 34677888888887766543 67777777888899999999999888887777544
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.16 E-value=25 Score=27.85 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC
Q 036303 101 DSVWEFYEEMVLCGLVADV-VTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPT 153 (605)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 153 (605)
+.+.++|..|...|+.... ..|......+-..|++.+|.++|..-++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3455666666666554333 2455555556666666666666666666654443
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.36 E-value=50 Score=31.94 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHhhcCCchHHHHHHHHHH
Q 036303 4 VLANAKLYKNARCLIKDVT 22 (605)
Q Consensus 4 ~~~~~~~~~~a~~~~~~l~ 22 (605)
.|...+++.+|..+-..++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~ 163 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVV 163 (523)
T ss_dssp -------------------
T ss_pred HHhccccHHHHHHHHHHHH
Confidence 4556777777777666554
No 276
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=69.83 E-value=77 Score=30.05 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=71.0
Q ss_pred cCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHH
Q 036303 65 MGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDE 144 (605)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 144 (605)
..+.+-|+++..+...+-....|..-...+...|++++|..+--...+ |.-.++.|.+.+-..=..-|+..-.+.+|..
T Consensus 342 l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~ 420 (494)
T 1bpo_A 342 LQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGI 420 (494)
T ss_dssp TCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 477788888888887766666777777888888888888877766543 3444566665554444445666666777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 145 MIDKGIEPTVVIYTILIHGLCNENKMVEAESMF 177 (605)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (605)
+.+.| ..+..---.+++.-...|+.+-..+.+
T Consensus 421 Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 421 LLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccC-ccchHHhhHHhHHHHhccHHHHHHHHH
Confidence 76665 345444444555555566655444433
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.53 E-value=27 Score=24.71 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=21.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhC
Q 036303 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHH 218 (605)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (605)
+...|++++|..+.+.+. -||...|.++.. .+.|..+++...+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 444555555554443332 244444433322 2344444444444444443
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.46 E-value=25 Score=24.79 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=20.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhC
Q 036303 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHH 218 (605)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (605)
+...|++++|..+.+.+. -||...|.++.. .+.|..+++...+.++..+
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 344555555544433322 244444433322 2444444444444444443
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.29 E-value=30 Score=24.46 Aligned_cols=75 Identities=9% Similarity=-0.094 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
..++|..+-+-+... ++.. .-..-+..+...|+|++|..+.+.. ..||...|..+ +-.+.|-.+++...+
T Consensus 22 ~HqEA~tIAdwL~~~---~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLK---GEEEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 456666666655542 2221 1112223455667777776654422 24555555544 345666666666655
Q ss_pred HHHHh
Q 036303 567 EFLKE 571 (605)
Q Consensus 567 ~~~~~ 571 (605)
.++..
T Consensus 93 ~~la~ 97 (116)
T 2p58_C 93 NRLAR 97 (116)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 44443
No 280
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=66.82 E-value=46 Score=26.37 Aligned_cols=33 Identities=6% Similarity=-0.187 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.+..++..+-..|+.++|++.+..-...+|=.+
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 456678889999999999999888777665443
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.77 E-value=53 Score=27.05 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 036303 432 PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTY 511 (605)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 511 (605)
++..+-...+.++.+.|.. ++...+.+.+. .++...-...+.++...|.. ++...+..+.+ .++...-
T Consensus 93 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~-------d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr 160 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDE-RAVEPLIKALK-------DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVR 160 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT-------CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHH
T ss_pred CCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh-------CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHH
Confidence 4444544555555555543 23344444443 34444444445555555543 23444444442 3455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...+.++.+.+. .++...+..+++
T Consensus 161 ~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 161 QSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 555666666655 445555555554
No 282
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.63 E-value=29 Score=24.49 Aligned_cols=76 Identities=11% Similarity=-0.147 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
..++|..+-+-+... ++.. .-..-+..+...|+|++|..+.+.. ..||...|..+ +-.+.|-.+++...+
T Consensus 21 ~HqEA~tIAdwL~~~---~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERL---GQDEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 456666666655542 2221 1112223455667777766654321 24555555444 345666666666666
Q ss_pred HHHHhc
Q 036303 567 EFLKES 572 (605)
Q Consensus 567 ~~~~~~ 572 (605)
.++...
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 555443
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=62.74 E-value=33 Score=28.73 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 036303 101 DSVWEFYEEMVLCGLVADV-VTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEP 152 (605)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 152 (605)
+.+.++|..|...|+.... ..|......+-..|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555666666655544332 244555555555666666666666655554443
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.93 E-value=83 Score=26.34 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=51.5
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH
Q 036303 469 CSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDA 543 (605)
Q Consensus 469 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 543 (605)
...|+......+.. +. ..+++..+|..|...|+.-... .|......+...|++.+|..+|...++.+-.|-.
T Consensus 113 YknD~RyLklWl~Y-a~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 113 YKDDVRYLRIWMQY-VN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp GTTCHHHHHHHHHH-HT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred ccCCHHHHHHHHHH-HH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 35555544444332 22 2357778999999888766544 7778888888899999999999999987777743
No 285
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=56.94 E-value=44 Score=29.82 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=15.1
Q ss_pred HHhcCCHHHHHHHHHHhhhc
Q 036303 444 LFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~ 463 (605)
+...|++++|+..|+.++..
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~~ 131 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILLS 131 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 45678888888888877664
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.44 E-value=1.1e+02 Score=27.91 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 036303 263 NCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQ--LEGAEGLLQKMYKEGILA 327 (605)
Q Consensus 263 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~ 327 (605)
..++.-|...|+.++|...++++..-.. -...+...+..++-+.++ .+....++..+...++-+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 4567777778888888888888753110 012233334444444332 344566666666665443
No 287
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.30 E-value=2.2e+02 Score=28.56 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=56.3
Q ss_pred CChHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHH
Q 036303 66 GHIEEALWVYRKIEVLPAI-QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDE 144 (605)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 144 (605)
....+...++++.+..|-. ..-..-+..+.+.+++.....++.. .+.+...-.....+....|+..+|......
T Consensus 53 ~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~ 127 (618)
T 1qsa_A 53 QPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (618)
T ss_dssp CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 3566666666666544433 2334445556666676665554332 233555555566667777777767666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 145 MIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
+-..| ......+..++..+.+.|.+
T Consensus 128 lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 128 LWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 65544 22445566666666665554
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.27 E-value=1.5e+02 Score=31.67 Aligned_cols=131 Identities=8% Similarity=0.010 Sum_probs=64.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChh
Q 036303 57 TLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136 (605)
Q Consensus 57 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 136 (605)
.++..+...|.++-|.++...++.. .-.-..+++++...|++++|.+.|+++. .|+..+...... ..
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~t--~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~ 881 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNSD--PIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LR 881 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCSS--HHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hh
Confidence 3555566666666666655555432 2223455666677777777777776543 122211100000 00
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHhcc
Q 036303 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNL----YTYNALMDGYCKV 202 (605)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~ 202 (605)
....++.... . ......-|..++..+-+.+.++.+.++-+..++.-..-|. ..|..+.++.+..
T Consensus 882 ~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 882 EFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 0001111100 0 0112236677888888888888888777777654211122 2455566655543
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.51 E-value=1.4e+02 Score=31.86 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=56.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLL 519 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (605)
++..+...|..+-|.++. .. ++.++..--.++.+|...|++++|...|+++-. |+.++......
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~------ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV------ 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG------
T ss_pred HHHHHHHhcHHHHHHHHH----hh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc------
Confidence 455566666666554422 22 233443334566777788888888888877642 33222111000
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 520 RAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
......++. ..+ ........|.+++..+.+.|-++.+..+.+.+.+.-
T Consensus 880 ----~~~~~~ll~-~~e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 880 ----LREFQEIAE-KYH-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp ----GHHHHHHHH-HTT-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ----hhhhhhccC-ccc-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 000001111 000 001123466777777777777777777777777643
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.36 E-value=56 Score=31.61 Aligned_cols=69 Identities=12% Similarity=-0.048 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKM-GIVPD---AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.++.+++.|...+.++.|..++.+..-- ...++ ...+..+|+.+.-.++|.+|.+.+..+...-|.+..
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 4555555555666666666655554310 00011 223345566666666666666666666665554443
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.06 E-value=1.5e+02 Score=25.07 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=39.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCC----CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 91 LNGLIKKGKFDSVWEFYEEMVLC--GLVA----DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGL 164 (605)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (605)
+..+....+|++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 45566667777777776655432 1111 1111122222222222222233333333 22 23344444555556
Q ss_pred HhcCCHHHHHHHHHHHH
Q 036303 165 CNENKMVEAESMFRSMR 181 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~ 181 (605)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 66666666666664443
No 292
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.53 E-value=1.5e+02 Score=24.10 Aligned_cols=39 Identities=13% Similarity=-0.068 Sum_probs=22.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 305 CGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG 343 (605)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (605)
.+-.+++.|+.++.+|++.|..|....-..++.+....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344667777777777777765544444444444443333
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.33 E-value=1.8e+02 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEK 460 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (605)
.++.......+..+.+.|+.++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 344555555566667777777777766543
No 294
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.31 E-value=1.6e+02 Score=24.13 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 306 GVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG 343 (605)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (605)
+-.+++.|+-++.+|++.| .|....-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4466777777777777776 444444444444444333
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.52 E-value=2e+02 Score=24.55 Aligned_cols=7 Identities=14% Similarity=0.472 Sum_probs=3.0
Q ss_pred HhcCChh
Q 036303 95 IKKGKFD 101 (605)
Q Consensus 95 ~~~~~~~ 101 (605)
++.|+.+
T Consensus 13 ~~~g~~~ 19 (285)
T 1wdy_A 13 VQNEDVD 19 (285)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3444443
No 296
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.30 E-value=1.8e+02 Score=23.98 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=23.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 305 CGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG 343 (605)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (605)
.+-.+++.|+.++.+|++.|..|....-..++.+....|
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344677777777777777765554444444444444433
No 297
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.13 E-value=1.7e+02 Score=23.57 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 036303 432 PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTY 511 (605)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 511 (605)
++..+-...+.++.+.+..+ +...+.+.+. .++...-...+.++...++. ++...+..+.. .++...-
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-------d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr 155 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK-------DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVR 155 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-------CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc-------CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHH
Confidence 45555555555555555432 3334444443 23444444445555555543 34444444443 3455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...+.++...|. .++...+..+++
T Consensus 156 ~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 156 QSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 566666666655 345555555553
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.04 E-value=1.6e+02 Score=23.08 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=28.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCC--CHHhHHHHHH------HHHccCChhHHHHHHHHHHh
Q 036303 96 KKGKFDSVWEFYEEMVLCGLVA--DVVTYGVLID------CCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~ 147 (605)
..|+|-+|-++++.+-+....+ ....|..||+ ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467777777777666554333 3334444544 12345666666666666544
No 299
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.89 E-value=2.2e+02 Score=24.52 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHH
Q 036303 432 PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG-QILKASKLFSDMRSDNLRPDNCT 510 (605)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~ 510 (605)
++..+-...+.++...|.. .+...+...+. .++...-...+.++...| ....+...+..+.+ .++..+
T Consensus 140 ~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~-------d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~v 208 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDK-ATIPLLINLLK-------DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEV 208 (280)
T ss_dssp SCHHHHHHHHHHHHTC----CCHHHHHHHHT-------CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHH
T ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc-------CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHH
Confidence 4555545555555555442 23444444433 233333333333443333 12344444444442 345555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
-...+.++...|+. .+...+..+++. ++ +....+.++.+.|+ .++...+..+.+
T Consensus 209 R~~A~~aL~~~~~~-~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 209 RIEAIIGLSYRKDK-RVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHHHHTTCG-GGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHHHHHhCCH-hhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 55566666666653 344444444432 22 22334455555565 355555555554
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.12 E-value=1.7e+02 Score=24.31 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 100 FDSVWEFYEEMVLCGLVADVV-------TYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
++.|+.+++.+.+.-..++.. .-...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 466777777776553211111 1113345577778888888888777664
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.33 E-value=1.7e+02 Score=24.11 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.9
Q ss_pred HHhcCCH
Q 036303 164 LCNENKM 170 (605)
Q Consensus 164 ~~~~~~~ 170 (605)
.+..|+.
T Consensus 49 A~~~~~~ 55 (240)
T 3eu9_A 49 AAINNRI 55 (240)
T ss_dssp HHHTTCH
T ss_pred HHHhCCH
Confidence 3344443
No 302
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.48 E-value=2.7e+02 Score=24.87 Aligned_cols=108 Identities=12% Similarity=-0.016 Sum_probs=56.4
Q ss_pred hhHhhcCCchHHHHHHHHHHHHHhhcCCCc-ccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhc---CChHHHHHHHH--
Q 036303 3 YVLANAKLYKNARCLIKDVTENLLKSRKPH-HVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEM---GHIEEALWVYR-- 76 (605)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~-- 76 (605)
+-+...|+|.+|...+++++....-.--.. ....++-+.+.. -..++...-+..-.+. .+..+.+++..
T Consensus 122 yk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~i-----crEYilal~iEl~Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 122 YKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILET-----AREYILGLSIELERRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 446788999999999999998765442221 111122121110 0112222222222232 33444444433
Q ss_pred -hcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036303 77 -KIEVLPA--IQACNALLNGLIKKGKFDSVWEFYEEMVLCGL 115 (605)
Q Consensus 77 -~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 115 (605)
.....|. .-+...-+....+.+++..|..+-+++++.++
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 2332222 23344455666778888888888888887754
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.05 E-value=3.5e+02 Score=25.66 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 036303 236 KVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGN-----LFEAMSLCSEMEKFEI 290 (605)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 290 (605)
+.++.+.|...+..|.+.|..|....-..+..+....|. ..-|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 456777777777777777765555444444444444443 3344455555555553
No 304
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.04 E-value=85 Score=21.74 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+...++.+.+.|+|++|+++.++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 33444555555555555444433
No 305
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.99 E-value=2.1e+02 Score=23.18 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=20.3
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036303 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK 169 (605)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (605)
+..+-...+.++...++. .+...+..+.. .++..+-...+.++.+.++
T Consensus 63 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 444444444555554442 22233333332 2344444444444444444
No 306
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=30.86 E-value=3.3e+02 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
...|..++..+.+.+++.+|++.|.+...
T Consensus 318 vYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 318 IYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 33444555555556666666666555544
No 307
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.78 E-value=2e+02 Score=22.86 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=30.3
Q ss_pred CCccHHHHH--HHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 539 IVPDAVINQ--VMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 539 ~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..|-...|. ..+.-|...|-.++..++|..++.++|.
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 567655553 5677789999999999999999999986
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.96 E-value=2.1e+02 Score=25.50 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ--ILKASKLFSDMRSDNLRPDNC 509 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~ 509 (605)
...++.-|...|+.++|.+.++++.... -........+..++-+.++ .+...+++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~-----f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPH-----FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGG-----GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc-----chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3456667777888999988888874210 1112223333334333322 345667777776655544333
No 309
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.90 E-value=2.3e+02 Score=23.28 Aligned_cols=9 Identities=0% Similarity=-0.131 Sum_probs=3.9
Q ss_pred HHHccCChh
Q 036303 128 CCCGQGDVM 136 (605)
Q Consensus 128 ~~~~~g~~~ 136 (605)
..+..|+.+
T Consensus 48 ~A~~~~~~~ 56 (240)
T 3eu9_A 48 WAAINNRID 56 (240)
T ss_dssp HHHHTTCHH
T ss_pred HHHHhCCHH
Confidence 334445543
No 310
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.29 E-value=4.8e+02 Score=26.35 Aligned_cols=342 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh-------ccCChHHHHHHHHHHHhCCCCCCcchHHHHH
Q 036303 159 ILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC-------KVADVNRALEFYHEMLHHNLQPNVVTFGVLM 231 (605)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 231 (605)
.++-.+.++|.+++|.++.++.... +.--...+...+..|+ ....-++....|++..+. .|+...|...+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~--~~~~DpyK~Av 233 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKS--SLDGDPYRLAV 233 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--------------------------------CHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCChhhHHH
Q 036303 232 DGLCKVGELRAAGNFFVHMAKF-GVFPNIFVYNCLIDGHCKAG-----------NLFEAMSLCSEMEKFEISPDVFTYNI 299 (605)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 299 (605)
-......+.. -... .+..+..-|-.+=-...+.+ -+.+....+.+.-+....+ .
T Consensus 234 Y~Iig~cD~~--------~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------l 299 (661)
T 2qx5_A 234 YKLIGRCDLS--------RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------Y 299 (661)
T ss_dssp HHHHHTCCGG--------GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------C
T ss_pred HHHHhccccc--------ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------H
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh---
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK--- 376 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 376 (605)
...++.-.|+++.|..++... ...+.+.+...+..|.-.+- -+.+...........+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhh
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHH-----------HHHHHHHH-CCCCC----CHHHHHH
Q 036303 377 AGNIDAAMGLYTEMVIKS-LVPDVVVFTALIDGLSKDGNMKETL-----------RLYKEMLE-AKITP----SVFTVSS 439 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~-----------~~~~~~~~-~~~~~----~~~~~~~ 439 (605)
..++..|.++|--+-..+ ..-.......+-......+.++.-+ -++++... .++.. .......
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~ 448 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQ 448 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC----------------HHHHHHHHHHHHhC-
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ----------------ILKASKLFSDMRSD- 502 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------~~~A~~~~~~~~~~- 502 (605)
.+..+...|++++|+.+|.-+-+. ..-....+.++.-....-. ...|.++.+.....
T Consensus 449 aA~~ae~~G~~~dAi~LY~La~~~------d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~ 522 (661)
T 2qx5_A 449 AARRADEDGRIYDSILLYQLAEEY------DIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNA 522 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHhcCH------HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCc
Q ss_pred ----CCCCCHH-HHHHHHHHHH-----hcCCHHHHHHHHHHH
Q 036303 503 ----NLRPDNC-TYTTMLRGLL-----RAKRMLDVMMLLADM 534 (605)
Q Consensus 503 ----~~~p~~~-~~~~l~~~~~-----~~g~~~~A~~~~~~~ 534 (605)
.+.+... |+..|++... +.|+++.|++.++++
T Consensus 523 ~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 523 GISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.28 E-value=2e+02 Score=21.96 Aligned_cols=60 Identities=7% Similarity=-0.024 Sum_probs=32.9
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036303 109 EMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK 169 (605)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (605)
.+...|..++..- ..++..+...+..-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3445565544432 23344444555566777777777766555555554445555555543
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.94 E-value=3.2e+02 Score=24.27 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=52.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCccHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC---TYTTMLRGLLRAKR--MLDVMMLLADMIKMGIVPDAVINQVMV 550 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~ 550 (605)
...++.-|...|+.++|.+.++++. .|... +...+..+.-+.++ .+....++..+.+.|+-+...+...+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~----~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC----CGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC----CCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4567778888999999999999985 23221 22333334433322 345667777777667666555555555
Q ss_pred HHHHhcCC----hhHHHHHHHHHH
Q 036303 551 RGYQENGD----LKSAFRCSEFLK 570 (605)
Q Consensus 551 ~~~~~~g~----~~~A~~~~~~~~ 570 (605)
+.+...-| ...|...+.++.
T Consensus 245 ~vl~~l~Dl~lDiP~A~~~la~~v 268 (307)
T 2zu6_B 245 RIYNEIPDINLDVPHSYSVLERFV 268 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHhccHhhcccccHHHHHHHHH
Confidence 54444332 334444444443
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.52 E-value=90 Score=26.63 Aligned_cols=14 Identities=7% Similarity=0.294 Sum_probs=6.3
Q ss_pred hcCCHHHHHHHHHH
Q 036303 306 GVGQLEGAEGLLQK 319 (605)
Q Consensus 306 ~~~~~~~A~~~~~~ 319 (605)
..|+.+-+..++++
T Consensus 234 ~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 234 KTGKIGIFQHIIRR 247 (260)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHh
Confidence 34444444444443
No 314
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.38 E-value=2.3e+02 Score=22.30 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=39.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-HH-----HhcCCHHHHHHHHHHHHH
Q 036303 484 CYDGQILKASKLFSDMRSDNLRP--DNCTYTTMLR-GL-----LRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~~-----~~~g~~~~A~~~~~~~~~ 536 (605)
...|++-+|-++++.+-...-.| ....|..|++ .. .+.|+...|..++.+++.
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34599999999999987654445 4446777777 22 257999999999998875
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.35 E-value=2.2e+02 Score=21.87 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=31.4
Q ss_pred HHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036303 110 MVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK 169 (605)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (605)
+...|..++. .-..++..+...+..-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4455555332 3334445555555666777777777766555555554444555555543
No 316
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.02 E-value=2.1e+02 Score=21.49 Aligned_cols=59 Identities=8% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHCCCCCCHHhHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036303 110 MVLCGLVADVVTYGVLIDCCCGQG-DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK 169 (605)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (605)
+.+.|..++..- ..++..+...+ ..-.|.++++.+.+.++..+..+...-+..+.+.|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 445566544433 33444555555 567788888888777655565555545555555543
No 317
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.71 E-value=1.4e+02 Score=22.31 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=16.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK 169 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (605)
.+..-.|.++++.+.+.+...+..+....+..+...|-
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33444455555555444433344443334444444443
No 318
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=25.38 E-value=2.7e+02 Score=23.69 Aligned_cols=146 Identities=9% Similarity=0.099 Sum_probs=73.4
Q ss_pred ccHHHHHHHHhhC-cCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCChhHHHHH
Q 036303 33 HVCYSVFNALNSL-EIPKFNPSVFSTLIIAFSEMG-HIEEALWVYRKIEVL----PAIQACNALLNGLIKKGKFDSVWEF 106 (605)
Q Consensus 33 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (605)
.....+|+.+... +....+..-+..++..+...+ .......+|..+... .+..-+..++..+......++...+
T Consensus 91 ~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~ 170 (256)
T 2jul_A 91 KELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWA 170 (256)
T ss_dssp HHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHH
Confidence 3455666666543 233356666666665554322 334566778777321 2223333344333333333445555
Q ss_pred HHHHHHCC-CCCCHHhHHHHHHHHH-ccC-----------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 107 YEEMVLCG-LVADVVTYGVLIDCCC-GQG-----------DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEA 173 (605)
Q Consensus 107 ~~~~~~~~-~~~~~~~~~~l~~~~~-~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (605)
|..+-..+ -..+..-+..++..+. ..| ..+.+..+|..+-..+ .....+..+...+.+...+-++
T Consensus 171 F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~ 248 (256)
T 2jul_A 171 FNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNS 248 (256)
T ss_dssp HHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHH
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHH
Confidence 65443221 1123333444443332 113 2345566666654332 1234677777888888888888
Q ss_pred HHHHHHH
Q 036303 174 ESMFRSM 180 (605)
Q Consensus 174 ~~~~~~~ 180 (605)
...|+.+
T Consensus 249 l~~~d~~ 255 (256)
T 2jul_A 249 MQLFENV 255 (256)
T ss_dssp HHHHHHH
T ss_pred HHhhccc
Confidence 8877764
No 319
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.28 E-value=2.6e+02 Score=22.25 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.3
Q ss_pred ccCChhHHHHHH
Q 036303 131 GQGDVMKALNLF 142 (605)
Q Consensus 131 ~~g~~~~a~~~~ 142 (605)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444443
No 320
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.20 E-value=2.8e+02 Score=22.64 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=10.0
Q ss_pred cCChHHHHHHHHHHHhCCCC
Q 036303 202 VADVNRALEFYHEMLHHNLQ 221 (605)
Q Consensus 202 ~~~~~~a~~~~~~~~~~~~~ 221 (605)
..+.+.|+-++-+|++.|..
T Consensus 20 GSDpDAAly~LaRMl~~GED 39 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGD 39 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 34555555555555555433
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.11 E-value=1.7e+02 Score=23.02 Aligned_cols=59 Identities=12% Similarity=0.060 Sum_probs=33.5
Q ss_pred HHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 036303 111 VLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK--GIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
...|...+. .-..++..+...++.-.|.++++.+.+. ++..+..+...-+..+.+.|-+
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555433 3344455566666677777777777765 5455555444445555555543
No 322
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.06 E-value=2.3e+02 Score=25.99 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 036303 261 VYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD---VFTYNILIKGLCGVGQ--LEGAEGLLQKMYKEGIL 326 (605)
Q Consensus 261 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~ 326 (605)
....++.-|...|+.++|...++++.. |+ ......++......++ .+.+..++..+...++-
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 356788889999999999999999853 43 1222233333333332 24455666666665544
No 323
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.93 E-value=3.2e+02 Score=23.20 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=24.5
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVV---IYTILIHGLCNENKMVEAESMFRSMRECGVVPN 188 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 188 (605)
+...++.|+.+....++ +.|..++.. .-...+...+..|+.+ +++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 34445667665444443 333333211 1112344455566654 4444445554443
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.61 E-value=2.3e+02 Score=21.83 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=35.5
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 109 EMVLCGLVADVVTYGVLIDCCCGQG-DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
.+...|..++..- ..++..+...+ ..-.|.++++.+.+.++..+..+...-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3455666654433 33344454554 5667888888887776555665555555666655543
No 325
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=24.02 E-value=2.6e+02 Score=21.87 Aligned_cols=129 Identities=9% Similarity=0.120 Sum_probs=59.5
Q ss_pred CCHHhHHHHHHHHHhc-CChHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHhHH
Q 036303 50 FNPSVFSTLIIAFSEM-GHIEEALWVYRKIEV----LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGL-VADVVTYG 123 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 123 (605)
.+..-+..++..+... ........+|..+.. ..+..-+..++.........+....+|..+-..+- ..+..-+.
T Consensus 36 i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~ 115 (183)
T 1s6c_A 36 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMM 115 (183)
T ss_dssp ECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred CCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 4555555555444332 234455566665521 12233333344333333334455556655533211 11222233
Q ss_pred HHHHHHH-ccCC-----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 124 VLIDCCC-GQGD-----------VMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180 (605)
Q Consensus 124 ~l~~~~~-~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (605)
.++.... ..|. .+.+..++..+-..+ .....+..+...+.+...+-+....|..+
T Consensus 116 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 116 DIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp HHHHHHHHHTC-----------CHHHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhcc
Confidence 3332221 1132 256677777764432 13445666666666666666666666543
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.00 E-value=2.4e+02 Score=21.47 Aligned_cols=67 Identities=18% Similarity=0.055 Sum_probs=44.4
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh
Q 036303 68 IEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDV 135 (605)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (605)
.+.+.+.+++.+...+. .-..++..+...+..-.|.++++.+.+.++..+..|-...+..+...|-+
T Consensus 6 ~~~~~~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 6 LKEALETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34455556655443333 23456667777777889999999998887666777666666777776643
No 327
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.74 E-value=67 Score=21.54 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 547 QVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
..+++-|+..|+|+.|..+|+.+.+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4567777788888888888777665
No 328
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.43 E-value=2.5e+02 Score=21.53 Aligned_cols=45 Identities=7% Similarity=0.138 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 036303 334 SLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG 378 (605)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (605)
.++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444444555566665555444444444444444444444
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.01 E-value=1.8e+02 Score=21.87 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=6.7
Q ss_pred ChHHHHHHHHHHHhC
Q 036303 204 DVNRALEFYHEMLHH 218 (605)
Q Consensus 204 ~~~~a~~~~~~~~~~ 218 (605)
..-.|.++++.+.+.
T Consensus 33 ~~~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 33 RHMSAEDVYKALMEA 47 (136)
T ss_dssp CSBCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhh
Confidence 334444444444444
No 330
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=22.99 E-value=1.7e+02 Score=19.88 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=8.9
Q ss_pred hcCCHHHHHHHHHHHH
Q 036303 520 RAKRMLDVMMLLADMI 535 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~ 535 (605)
+.|++++|+.++.+.+
T Consensus 31 ~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4566666655555444
No 331
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.98 E-value=88 Score=19.59 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 036303 172 EAESMFRSMRECGVVPNLYTYNALMDGY 199 (605)
Q Consensus 172 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 199 (605)
+|.+.|.+|++..-.++.-+|...++..
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 4444444444332222334444444443
No 332
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.91 E-value=1.1e+02 Score=25.96 Aligned_cols=54 Identities=11% Similarity=-0.011 Sum_probs=28.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHH--ccCChhHHHHHHHHHH
Q 036303 93 GLIKKGKFDSVWEFYEEMVLCGLVADVV-------TYGVLIDCCC--GQGDVMKALNLFDEMI 146 (605)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~g~~~~a~~~~~~~~ 146 (605)
..++.|+.+....+++.+...|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3345677777766776666555444422 2233333322 4577666666666543
No 333
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.72 E-value=1.9e+02 Score=22.06 Aligned_cols=59 Identities=5% Similarity=-0.040 Sum_probs=31.7
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036303 109 EMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK 169 (605)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (605)
.+...|..++..- ..++..+...+ .-.|.++++.+.+.++..+..+...-+..+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3444555544432 23334444445 56777777777776555555554444555555543
No 334
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=22.50 E-value=3.8e+02 Score=23.16 Aligned_cols=206 Identities=10% Similarity=-0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhC
Q 036303 139 LNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHH 218 (605)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (605)
.++.+-+.+.++......-...+...+..|+.+ +++.+.+.|..++...-...+...+..|+.+-+.-+++. ..
T Consensus 13 ~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga 86 (285)
T 3kea_A 13 KQLKSFLSSKDTFKADVHGHSASYYAIADNNVR----LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS--GL 86 (285)
T ss_dssp HHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT--TC
T ss_pred HHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CC
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 036303 219 NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVY---NCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVF 295 (605)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 295 (605)
.+......-...+...+..|+.+-+.-+++. |..++.... .+.+...+..|+ .++++.+.+.|..+...
T Consensus 87 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~ 158 (285)
T 3kea_A 87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLND----VSIVSYFLSEIPSTFDL 158 (285)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTC----HHHHHHHHTTSCTTCCC
T ss_pred CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCC----HHHHHHHHhCCCccccc
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 036303 296 -TYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPN 363 (605)
Q Consensus 296 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 363 (605)
.-.+.+...+..|+.+-+..+++.-...+.. |..-.+..+...+..|+ .++.+.+.+.|..++
T Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 159 AILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKD----IEMLQALFKYDINIY 222 (285)
T ss_dssp STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCST
T ss_pred cCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCC
No 335
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.33 E-value=1.3e+02 Score=22.87 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=24.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 125 LIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 125 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
++..+...++.-.|.++++.+.+.+...+..+...-+..+...|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444444445555666666665555444555444455555555543
No 336
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.93 E-value=1.9e+02 Score=22.22 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 036303 204 DVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVG 238 (605)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (605)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554433334444444444444433
No 337
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.59 E-value=1.1e+02 Score=18.69 Aligned_cols=35 Identities=14% Similarity=0.395 Sum_probs=17.2
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhcCC--hhHHHHHHHHH
Q 036303 530 LLADMIKMGIVPDAVINQVMVRGYQENGD--LKSAFRCSEFL 569 (605)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~ 569 (605)
.++.+++.|++++ ..-.++.+.|+ .+.|..++.++
T Consensus 12 mlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 12 MLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 3444445555442 22334445555 66666665554
No 338
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=21.35 E-value=3.1e+02 Score=25.51 Aligned_cols=141 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (605)
++.-.....++..|+--+.++.+....|... .++.+|.+++.....-+-.....-|..+.-.+.
T Consensus 251 lLyd~Ghl~~YPmALgnLgDLEei~pt~grp----------------~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~ 314 (489)
T 4gq4_A 251 LLYDLGHLERYPMALGNLADLEELEPTPGRP----------------DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHC 314 (489)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHSCCTTSC----------------CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred HHHhccchhhcchhhhcccCHhhcCCCCCCC----------------CHHHHHHHHHHHHHHhcccCcccceeecchHHH
Q ss_pred ccCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 036303 485 YDGQILKASKLFSDMRS-----DNLRPDNCTYTTMLRGLLRA--KRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENG 557 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 557 (605)
+.+++.+|++.+-++-. .--.-|...|..++...-.. .-+..+....+.-...++..|+..+..++..|-.--
T Consensus 315 R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanelip~~lk~~~~~~~~~~~~~~l~dp~c~a~lL~fyDgiC 394 (489)
T 4gq4_A 315 RNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGSQGSALQDPECFAHLLRFYDGIC 394 (489)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCGGGCHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHhhhHHHHHhhhcccccccccCCCCcchhhhhccccCCcc
Q ss_pred ChhH
Q 036303 558 DLKS 561 (605)
Q Consensus 558 ~~~~ 561 (605)
.|++
T Consensus 395 ~WEE 398 (489)
T 4gq4_A 395 KWEE 398 (489)
T ss_dssp HHHT
T ss_pred hhhc
No 339
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.25 E-value=3.5e+02 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=10.7
Q ss_pred HHccCChhHHHHHHHHHHhCC
Q 036303 129 CCGQGDVMKALNLFDEMIDKG 149 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~ 149 (605)
.+..|+.+.+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 334555555555555444443
No 340
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.19 E-value=3.4e+02 Score=22.17 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=22.1
Q ss_pred hHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 68 IEEALWVYRKIEVLPAIQ-------ACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
++.|+.+++.+....+.. .-...+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 356666666664222210 1112334556666666666666665443
No 341
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=20.86 E-value=1.9e+02 Score=19.53 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=12.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 036303 518 LLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~ 536 (605)
+-+.|++++|+.++...++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4466777777776665553
No 342
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.62 E-value=3.2e+02 Score=21.71 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCCCCcccHH---HHHHHHhccCCh-HHHHHHHHHHHh-CCCCCCcchH--HHHHHHHHhcCCHHHH
Q 036303 171 VEAESMFRSMRECGVVPNLYTYN---ALMDGYCKVADV-NRALEFYHEMLH-HNLQPNVVTF--GVLMDGLCKVGELRAA 243 (605)
Q Consensus 171 ~~a~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~-~~a~~~~~~~~~-~~~~~~~~~~--~~l~~~~~~~~~~~~a 243 (605)
....++.+.+.+.|..++..... ..+...+..+.. ..-.++++.+++ .|..++.... .+-+....+.|..+..
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v 170 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHH
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHH
Confidence 33445555566666554433211 122222222322 233445555555 5544432211 1223333455555444
Q ss_pred HHHHHHHHHC
Q 036303 244 GNFFVHMAKF 253 (605)
Q Consensus 244 ~~~~~~~~~~ 253 (605)
.-+.+...+.
T Consensus 171 ~~L~~~~~~~ 180 (186)
T 3t8k_A 171 KMMEDYIKKY 180 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 343
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.47 E-value=2.3e+02 Score=19.93 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCccHHHHHHH
Q 036303 492 ASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI-----KMGIVPDAVINQVM 549 (605)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~l 549 (605)
|.++.++....|+.|+..+..-++..|..-+- + +.++.++.. ..|..|+...+..+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 55666777777899998888888888876553 2 444433332 34677776665543
No 344
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.40 E-value=5.5e+02 Score=24.29 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHHCC
Q 036303 308 GQLEGAEGLLQKMYKEG 324 (605)
Q Consensus 308 ~~~~~A~~~~~~~~~~~ 324 (605)
++.+.|+.++.+|.+.|
T Consensus 269 sd~daAl~~la~ml~~G 285 (447)
T 3pvs_A 269 SAPDAALYWYARIITAG 285 (447)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44445555555554444
Done!