BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036307
         (405 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
          Length = 1230

 Score = 32.0 bits (71), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 259 RQCCFSLYTKMVHEFPG-VTVHSPFW--GACRSTNGNSFKNQMAV 300
           RQCCF++ T++V+  PG +T H P    G   S N  S  + + +
Sbjct: 451 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKI 495


>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
          Length = 1253

 Score = 32.0 bits (71), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 259 RQCCFSLYTKMVHEFPG-VTVHSPFW--GACRSTNGNSFKNQMAV 300
           RQCCF++ T++V+  PG +T H P    G   S N  S  + + +
Sbjct: 474 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKI 518


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,456,552
Number of Sequences: 62578
Number of extensions: 501399
Number of successful extensions: 1315
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 4
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)