BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036307
         (405 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8TDH9|BL1S5_HUMAN Biogenesis of lysosome-related organelles complex 1 subunit 5
           OS=Homo sapiens GN=BLOC1S5 PE=1 SV=1
          Length = 187

 Score = 36.6 bits (83), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 11  TCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHT--CNQRSVKLQGETKWIAAKFLH 68
           T V CE +      K  ++    S   +I D+  +H+   + R V +QGET++   +F  
Sbjct: 8   TPVGCEAAPGGGSKKRDSLGTAGSAHLIIKDLGEIHSRLLDHRPV-IQGETRYFVKEFEE 66

Query: 69  IWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHA-DGYAQLLQYKQEM 127
                E R ++ L+N I  T     P  +    D +++   R   A D   +L Q +QE 
Sbjct: 67  KRGLREMRVLENLKNMIHETNEHTLPKCRDTMRDSLSQVLQRLQAANDSVCRLQQREQER 126

Query: 128 ENVNSRNIVIIETK 141
           + ++S ++V  E +
Sbjct: 127 KKIHSDHLVASEKQ 140


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,853,893
Number of Sequences: 539616
Number of extensions: 6084108
Number of successful extensions: 16834
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16834
Number of HSP's gapped (non-prelim): 2
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)