Query 036307
Match_columns 405
No_of_seqs 218 out of 1443
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 19:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 95.2 0.024 8.1E-07 40.4 4.5 41 10-50 33-73 (76)
2 1wj2_A Probable WRKY transcrip 95.2 0.029 9.8E-07 40.1 4.9 42 9-50 35-76 (78)
3 3hot_A Transposable element ma 90.1 3.8 0.00013 37.9 12.8 59 182-243 185-252 (345)
4 2rpr_A Flywch-type zinc finger 87.0 0.59 2E-05 34.3 3.8 42 3-51 30-74 (87)
5 1q1v_A DEK protein; winged-hel 79.3 10 0.00035 26.3 7.4 43 56-98 11-56 (70)
6 3kks_A Integrase, IN; beta-str 71.1 14 0.00048 29.0 7.5 65 171-247 3-67 (152)
7 2ahq_A Sigma-54, RNA polymeras 58.5 19 0.00064 25.4 5.0 48 56-104 15-65 (76)
8 3l3u_A POL polyprotein; DNA in 50.3 49 0.0017 26.1 7.3 66 170-247 9-74 (163)
9 3hph_A Integrase, IN; protein- 50.0 41 0.0014 28.3 7.1 65 171-247 61-125 (219)
10 1bco_A MUA domain II, bacterio 49.2 35 0.0012 31.2 6.9 73 169-246 15-95 (327)
11 1cxq_A Avian sarcoma virus int 48.7 43 0.0015 26.6 6.7 71 170-247 11-81 (162)
12 1c0m_A Protein (integrase); HI 46.5 38 0.0013 29.2 6.4 71 170-247 10-80 (238)
13 2p5k_A Arginine repressor; DNA 45.9 34 0.0012 22.3 4.7 37 66-103 10-46 (64)
14 1c6v_A Protein (SIV integrase) 42.5 86 0.0029 24.4 7.6 65 170-246 9-73 (164)
15 2x78_A Integrase; viral protei 40.9 58 0.002 26.8 6.5 70 170-247 13-83 (200)
16 1pdn_C Protein (PRD paired); p 39.8 37 0.0013 25.4 4.7 37 64-101 82-123 (128)
17 2k27_A Paired box protein PAX- 37.8 73 0.0025 25.3 6.4 40 64-103 90-133 (159)
18 1k78_A Paired box protein PAX5 37.7 50 0.0017 25.9 5.3 39 64-102 97-139 (149)
19 2bw3_A Transposase; DNA recomb 35.9 81 0.0028 30.7 7.6 68 200-271 131-200 (534)
20 2qh9_A UPF0215 protein AF_1433 34.6 1.8E+02 0.0062 24.0 8.4 67 171-244 8-75 (184)
21 3f9k_A Integrase; protein-prot 34.0 98 0.0034 25.7 6.9 65 171-247 60-124 (210)
22 2nrr_A Uvrabc system protein C 32.3 70 0.0024 26.0 5.2 64 171-254 37-100 (159)
23 3av9_A Integrase, IN; protein- 32.0 98 0.0033 25.1 6.4 66 169-246 28-93 (183)
24 3tvz_A Putative uncharacterize 31.3 1.7E+02 0.0058 23.8 7.6 79 121-226 16-98 (172)
25 2nrt_A Uvrabc system protein C 28.6 1.1E+02 0.0036 26.4 6.0 64 171-254 42-105 (220)
26 1b4a_A Arginine repressor; hel 28.5 73 0.0025 25.5 4.7 39 64-103 8-46 (149)
27 2lsn_A Reverse transcriptase; 24.5 2.1E+02 0.0072 23.1 7.0 79 169-251 6-93 (165)
28 1ex4_A Integrase; SH3-like dom 23.0 2.3E+02 0.0079 23.9 7.4 65 171-247 10-74 (239)
29 3fj2_A Monooxygenase-like prot 22.8 3.3E+02 0.011 22.5 10.0 80 121-227 30-113 (186)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=95.22 E-value=0.024 Score=40.40 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=34.9
Q ss_pred CeEEEEEeecCCCceEEEEEEeCCCCEEEEEeeCCCceecc
Q 036307 10 STCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQ 50 (405)
Q Consensus 10 ~~r~~~~C~~~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~ 50 (405)
--|-..+|+..+||++-.+.+..++....++++.++|||..
T Consensus 33 ~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 73 (76)
T 2ayd_A 33 YPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73 (76)
T ss_dssp SCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred CceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence 35667999999999999999887666677889999999986
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=95.20 E-value=0.029 Score=40.15 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=35.1
Q ss_pred CCeEEEEEeecCCCceEEEEEEeCCCCEEEEEeeCCCceecc
Q 036307 9 WSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQ 50 (405)
Q Consensus 9 ~~~r~~~~C~~~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~ 50 (405)
.--|-..+|+..+||++-.+.+..++....++++.++|||..
T Consensus 35 ~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 76 (78)
T 1wj2_A 35 PYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL 76 (78)
T ss_dssp SSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred cCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence 335677999999999999999987666677889999999985
No 3
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=90.06 E-value=3.8 Score=37.85 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=37.9
Q ss_pred CCCCceeEEEEEEcCCCCeEEEEEEEee---ccccccHHHHHHHHhhccc-c-cC----CCCeEEEcCCcc
Q 036307 182 SPYKSVMLVAVCRDGNDSVLPIAFCEVV---EENLDSWAFFLKNLNYGLR-L-ER----GEGLCIMGDGDN 243 (405)
Q Consensus 182 ~~~~~~ll~~~g~d~~~~~~~~a~a~~~---~E~~~~~~wfl~~l~~~~~-~-~~----~~~~~iisD~~~ 243 (405)
.++++.+++..+.+..| .+++.+++ .-+.+.|.-+|+.+...+. . +. ..+.+++.|...
T Consensus 185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 34566777777778777 56777776 4566777777776544321 0 21 346799999854
No 4
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=86.99 E-value=0.59 Score=34.26 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=29.6
Q ss_pred EEEEcCCCeEEEEEeec---CCCceEEEEEEeCCCCEEEEEeeCCCceeccc
Q 036307 3 FSLERPWSTCVSCECSN---LHCDWKITAVKENRSNVFVICDITPMHTCNQR 51 (405)
Q Consensus 3 ~~~~rs~~~r~~~~C~~---~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~~ 51 (405)
|...+....+..++|.. .+|++||.... + . |. ....|||++.
T Consensus 30 Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~--~--~--~~-~~~~HnH~p~ 74 (87)
T 2rpr_A 30 YRKEKAAGEKVYWMCRDQARLGCRSRAITQG--H--R--IM-VMRSHCHQPD 74 (87)
T ss_dssp EEEEEECSSCEEEEEGGGTTSCCCCEEEEET--T--E--EE-ECSCCSSCCC
T ss_pred EEeeecCCCcEEEEecCCCCCCCCEEEEEcC--C--C--EE-CCCCcCCCCc
Confidence 55556666778899997 58999988753 2 2 32 4577999873
No 5
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=79.31 E-value=10 Score=26.30 Aligned_cols=43 Identities=7% Similarity=0.075 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHh-CCCCCHHHH
Q 036307 56 QGETKWIAAKFLHIWKQS--EHREVDKLRNEIATTY-GIKCPIWKL 98 (405)
Q Consensus 56 ~~ss~~ia~~~~~~i~~~--~~~~~~~i~~~l~~~~-g~~~s~~~~ 98 (405)
.+|-..+...+.+++++. .+++.++|++.|.+++ |+.++-++.
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~ 56 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKD 56 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHH
Confidence 677788888999998863 6899999999999999 999996554
No 6
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=71.06 E-value=14 Score=28.95 Aligned_cols=65 Identities=17% Similarity=0.087 Sum_probs=44.6
Q ss_pred eEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHH
Q 036307 171 MLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDE 247 (405)
Q Consensus 171 ~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 247 (405)
.++.+|.|+..+ .++++.+|..-+.. +++.+ .+++.+...-+|..+.... + |..|.||+.....+
T Consensus 3 ~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~--g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 3 HLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRY--T---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHS--C---CSEEEECSCHHHHS
T ss_pred cEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHh--C---CcEEecCCchHhhH
Confidence 578899999833 25667777755543 55554 4677777666666666555 3 88999999887654
No 7
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=58.48 E-value=19 Score=25.42 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=38.4
Q ss_pred cchHHHHHHHHHHHHhcC-C--CCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 036307 56 QGETKWIAAKFLHIWKQS-E--HREVDKLRNEIATTYGIKCPIWKLEAVDKM 104 (405)
Q Consensus 56 ~~ss~~ia~~~~~~i~~~-~--~~~~~~i~~~l~~~~g~~~s~~~~~~ak~~ 104 (405)
..++.-+...+++.|.+. + -++-.+|.+.|+++ |+.++.+++.+.|+.
T Consensus 15 ~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRRTVaKYRe~ 65 (76)
T 2ahq_A 15 GLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARRTVAKYREM 65 (76)
T ss_dssp SCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHHHHHHHHHH
Confidence 356677888888888863 3 37788999999866 999999999888875
No 8
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=50.33 E-value=49 Score=26.14 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=44.5
Q ss_pred ceEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHH
Q 036307 170 RMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDE 247 (405)
Q Consensus 170 ~~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 247 (405)
..++.+|.|+..++ ++++.+|...+.. .++.+ .+++.+.-.-+|..+.... + +..|.||+.....+
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~--~---~~~i~sD~G~~f~s 74 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRW--P---VKTVHTDNGSNFTS 74 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHS--C---CCEEEECCCGGGGS
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHc--C---CcEEeecChHhhhh
Confidence 45899999998642 5677778765543 55555 4556666666666655554 3 36899999887643
No 9
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=49.95 E-value=41 Score=28.29 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=43.1
Q ss_pred eEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHH
Q 036307 171 MLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDE 247 (405)
Q Consensus 171 ~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 247 (405)
.++.+|-|+..++ ++++.+|..-+.. .++. +.+++.+...-+|..+.... | |..|.||+.....+
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~--g---p~~i~sDnG~~F~s 125 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMF--A---PKSLQSDNGPAFVA 125 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHH--C---CCEEEECCCHHHHS
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHh--C---CcEEEeCCCchhhh
Confidence 5788999877443 5667777765544 5554 45556666555665555554 3 78999999987654
No 10
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=49.24 E-value=35 Score=31.15 Aligned_cols=73 Identities=15% Similarity=0.031 Sum_probs=48.3
Q ss_pred CceEEEEeceEEcCCC---Cc---eeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCe--EEEcC
Q 036307 169 CRMLVIVDGWEIDSPY---KS---VMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGL--CIMGD 240 (405)
Q Consensus 169 ~~~vi~~D~t~~~~~~---~~---~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~--~iisD 240 (405)
-..++.+|+|++.... .| ...+.+.+|..-+ .++|+.+...|+.++-.-.|....... + .|. .|.+|
T Consensus 15 p~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~--G--~P~~~~i~sD 89 (327)
T 1bco_A 15 AMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRY--G--IPEDFHITID 89 (327)
T ss_dssp TTTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHH--C--EESSCEEECC
T ss_pred CCcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhc--C--CCCCcEEEee
Confidence 3458999999865420 23 3556666776554 468999988887777666665554443 2 355 99999
Q ss_pred CcccHH
Q 036307 241 GDNGID 246 (405)
Q Consensus 241 ~~~~l~ 246 (405)
...+..
T Consensus 90 nG~~f~ 95 (327)
T 1bco_A 90 NTRGAA 95 (327)
T ss_dssp CTTSTT
T ss_pred Cchhhc
Confidence 987653
No 11
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=48.65 E-value=43 Score=26.58 Aligned_cols=71 Identities=11% Similarity=-0.141 Sum_probs=45.1
Q ss_pred ceEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHH
Q 036307 170 RMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDE 247 (405)
Q Consensus 170 ~~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 247 (405)
..++.+|-|+.... +|..+.++.+|...+ +++++.+- +++.+.-.-+|+.+.... + .|..|.||+.....+
T Consensus 11 ~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~--g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAAQHHWATAIAVL--G--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGG-TTSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHH--C--CCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccC-CCCEEEEEEEEcCCC-eEEEEECC-CccHHHHHHHHHHHHHHH--C--CCeEEEeCCchhhhh
Confidence 45899999987543 345666777887654 34566654 555555444555444443 2 367999999987653
No 12
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=46.50 E-value=38 Score=29.16 Aligned_cols=71 Identities=10% Similarity=-0.151 Sum_probs=47.2
Q ss_pred ceEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHH
Q 036307 170 RMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDE 247 (405)
Q Consensus 170 ~~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 247 (405)
..++.+|.|+.... +|..+.++.+|..- .+++++.+- +++.+.-.-+|+.+.... + .|..|.||+.....+
T Consensus 10 ~~~w~~D~~~~~~~-~g~~yl~~~iD~~S-r~i~~~~~~-~~~~~~v~~~l~~~~~~~--g--~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 10 LQIWQTDFTLEPRM-APRSWLAVTVDTAS-SAIVVTQHG-RVTSVAVQHHWATAIAVL--G--RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TSEEEEEEEECGGG-CSSCEEEEEEETTT-CCEEEEEES-SCCHHHHHHHHHHHHHHH--C--CCSEEEECSCHHHHS
T ss_pred CCEEEEeecccccc-CCCEEEEEEEECCC-CCEEEEEcc-CCCHHHHHHHHHHHHHHh--C--CCcEEEECCCCcccc
Confidence 45899999987643 34466667777654 445667665 666666666666555554 3 367999999987654
No 13
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=45.86 E-value=34 Score=22.35 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=28.6
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 036307 66 FLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDK 103 (405)
Q Consensus 66 ~~~~i~~~~~~~~~~i~~~l~~~~g~~~s~~~~~~ak~ 103 (405)
+...+..+..+++.+|.+.+++. |..+|..+++|.-.
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~-~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQD-GYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHT-TCCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh-CCCcCHHHHHHHHH
Confidence 34455667789999999999754 78899999987654
No 14
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=42.45 E-value=86 Score=24.40 Aligned_cols=65 Identities=15% Similarity=-0.014 Sum_probs=39.9
Q ss_pred ceEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHH
Q 036307 170 RMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID 246 (405)
Q Consensus 170 ~~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~ 246 (405)
..++.+|.++. +|. +.++.+|..-+ +++++.+ .+++.+...-++..+.... ++..|.||+.....
T Consensus 9 ~~~w~~D~~~~----~g~-~~l~~iD~~Sr-~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~~f~ 73 (164)
T 1c6v_A 9 LGTWQMDCTHL----EGK-IVIVAVHVASG-FIEAEVI-PQETGRQTALFLLKLAGRW-----PITHLHTDNGANFA 73 (164)
T ss_dssp TTEEEEEEEEE----TTE-EEEEEECTTSC-CEEEEEC-SSCSHHHHHHHHHHHHTTS-----CCCEEECCCCSSTT
T ss_pred CCEEEEeeccc----CCE-EEEEEEEccCC-EEEEEEc-CCCchHHHHHHHHHHHHhc-----CCCEEEeCCchhhh
Confidence 34788999988 344 34444777554 4556644 4555555555554444443 36899999987653
No 15
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=40.87 E-value=58 Score=26.75 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=43.6
Q ss_pred ceEEEEec-eEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHH
Q 036307 170 RMLVIVDG-WEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDE 247 (405)
Q Consensus 170 ~~vi~~D~-t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 247 (405)
-.++.+|- ++.... +|..++++.+|..-+. ++++.+ .+.+.+... +.|.... ..+.|..|.||+.....+
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~---~~l~~~~--~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATV---KSLNVLT--SIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHH---HHHHHHT--TTCCCSEEEECSCHHHHS
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHH---HHHHHHH--HhCCCcEEEecCCcceeh
Confidence 34788886 454433 5677788888876544 456665 555555544 4444444 234678999999876543
No 16
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=39.79 E-value=37 Score=25.44 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhCC-----CCCHHHHHHH
Q 036307 64 AKFLHIWKQSEHREVDKLRNEIATTYGI-----KCPIWKLEAV 101 (405)
Q Consensus 64 ~~~~~~i~~~~~~~~~~i~~~l~~~~g~-----~~s~~~~~~a 101 (405)
..+.+.+..++..++.+|...+.+. |+ .+|++++++.
T Consensus 82 ~~i~~~~~~~~~~s~~~i~~~l~~~-g~~~~~~~~s~~tv~r~ 123 (128)
T 1pdn_C 82 NRIEEYKRSSPGMFSWEIREKLIRE-GVCDRSTAPSVSAISRL 123 (128)
T ss_dssp HHHHHTTTTCTTCCHHHHHHHHHHT-SSSCSTTCCCHHHHHHH
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHc-CCccccCCcCHHHHHHH
Confidence 4455556677889999999998765 87 6899998876
No 17
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=37.75 E-value=73 Score=25.28 Aligned_cols=40 Identities=8% Similarity=0.005 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHh----CCCCCHHHHHHHHH
Q 036307 64 AKFLHIWKQSEHREVDKLRNEIATTY----GIKCPIWKLEAVDK 103 (405)
Q Consensus 64 ~~~~~~i~~~~~~~~~~i~~~l~~~~----g~~~s~~~~~~ak~ 103 (405)
+.+.+.+..++.+++.+|...+.+.. |..+|++++++.-.
T Consensus 90 ~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 90 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 44555666788899999999988765 67899999886644
No 18
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.72 E-value=50 Score=25.92 Aligned_cols=39 Identities=8% Similarity=0.028 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHh----CCCCCHHHHHHHH
Q 036307 64 AKFLHIWKQSEHREVDKLRNEIATTY----GIKCPIWKLEAVD 102 (405)
Q Consensus 64 ~~~~~~i~~~~~~~~~~i~~~l~~~~----g~~~s~~~~~~ak 102 (405)
..+.+.+..++..++.+|...+..+. |+.+|++++++.-
T Consensus 97 ~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L 139 (149)
T 1k78_A 97 EKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRII 139 (149)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHH
Confidence 44555556677788888888876665 7778888877653
No 19
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=35.90 E-value=81 Score=30.74 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=42.5
Q ss_pred eEEEEEEEeec--cccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHHHHhhcccchhhhcHHHHHHhhhh
Q 036307 200 VLPIAFCEVVE--ENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVH 271 (405)
Q Consensus 200 ~~~~a~a~~~~--E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~ 271 (405)
..++++.-++. .+.++..-.+....+..++.......++||....+..|++.. .|..|..|...-+.+
T Consensus 131 ~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~~----~~i~C~~H~lnLi~~ 200 (534)
T 2bw3_A 131 DLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANN----IRINCSSHLLSNVLE 200 (534)
T ss_dssp EEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTTS----EEEECHHHHHHHHHH
T ss_pred EEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhcC----cccccHHHHHHHHHH
Confidence 45666666663 444554444444444432332235678999998888777653 478899999876654
No 20
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=34.65 E-value=1.8e+02 Score=24.05 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=49.1
Q ss_pred eEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCC-CeEEEcCCccc
Q 036307 171 MLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGE-GLCIMGDGDNG 244 (405)
Q Consensus 171 ~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~-~~~iisD~~~~ 244 (405)
.|+.+|-.|. . +...++.+-.+ ++...=++++.+.-...++..-+++.+++. ...+ +.+++.|++.-
T Consensus 8 rv~GiDds~~--~-~~~~l~gvv~~-~~~v~g~~~~~~~vdG~dat~~i~~~~~~l---~~~p~~~vvllDG~g~ 75 (184)
T 2qh9_A 8 RFLGIDDSFD--D-RKCCVVGCVTC-GGYVEGFLYTEIDIDGLDATDKLISMVRRS---KFREQIKCIFLPGITL 75 (184)
T ss_dssp EEEEEEEEEC--S-SCEEEEEEEEE-TTEEEEEEEEEECTTCSCHHHHHHHHHTTC---TTTTTEEEEEESSSEE
T ss_pred EEEEEEcccC--C-CceEEEEEEEE-CCEEEEEEEEEEEECChhHHHHHHHHHHhc---CCCCCCcEEEECCEee
Confidence 5899999997 2 44555555556 788888999999999999988666665443 2232 58999999864
No 21
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=34.05 E-value=98 Score=25.69 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=42.4
Q ss_pred eEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHH
Q 036307 171 MLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDE 247 (405)
Q Consensus 171 ~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 247 (405)
.++.+|-|+..++ ++++.+|..-+ ++.++.+- +++.+.-.-+|..+.... | +..|.||+......
T Consensus 60 ~~w~~D~~~~~~~-----y~l~~vD~~sr-~~~~~~~~-~~~~~~~~~~l~~~~~~~--g---~~~i~sDnG~~F~s 124 (210)
T 3f9k_A 60 GTWQMDCTHLEGK-----IIIVAVHVASG-FIEAEVIP-QESGRQTALFLLKLASRW--P---ITHLHTDNGANFTS 124 (210)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEES-SCCHHHHHHHHHHHHTTS--C---CSEEEECCCTTTSS
T ss_pred CeEeEeecccCCe-----EEEEEEEcCCC-cEEEEEeC-CcchHHHHHHHHHHHHHc--C---CCEEEeCCCchhhH
Confidence 4788999888543 46667777665 56666554 466666666666555554 3 23599999987543
No 22
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=32.34 E-value=70 Score=25.97 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=43.6
Q ss_pred eEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHHHH
Q 036307 171 MLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVE 250 (405)
Q Consensus 171 ~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~ 250 (405)
-|++.||-..+..|+-- -+-. +..++|.-+-+.+..+.. ....|-.|+.|+.+|-.+|..
T Consensus 37 mVVf~~g~p~K~~YRrf------------------~I~~-~g~DDya~M~Evl~RR~~-r~~~PDLilIDGGkgQl~aA~ 96 (159)
T 2nrr_A 37 LVVFEDGFPKKGDYRRY------------------KIEQ-DHPDDYESIRTVVKRRYS-KHPLPNLLFVDGGIGQVNAAI 96 (159)
T ss_dssp EEEEETTEECGGGCEEE------------------EC------CHHHHHHHHHHHHHT-TSCCCSEEEESSCHHHHHHHH
T ss_pred EEEEeCCccChhhCcee------------------ecCC-CCCCHHHHHHHHHHHHhc-cCCCCCEEEEeCCHHHHHHHH
Confidence 47888998888877631 1211 224777777777766651 113578999999999999999
Q ss_pred hhcc
Q 036307 251 EFLP 254 (405)
Q Consensus 251 ~vfP 254 (405)
+++-
T Consensus 97 ~vl~ 100 (159)
T 2nrr_A 97 EALK 100 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 23
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=32.04 E-value=98 Score=25.07 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=38.6
Q ss_pred CceEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHH
Q 036307 169 CRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID 246 (405)
Q Consensus 169 ~~~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~ 246 (405)
-..++.+|.++..+ .. .++.+|..-+. ++++.+- +++.+.-.-++..+.... + +..|.||+.....
T Consensus 28 p~~~w~~D~~~~~g----~~-~l~~vD~~Sr~-~~~~~~~-~~~~~~~~~~~~~~~~~~--~---~~~i~sDnG~ef~ 93 (183)
T 3av9_A 28 SPGIWQLDCTHLEG----KV-ILVAVHVASGY-IEAEVIP-AETGQETAYFLLKLAGRW--P---VKTVHTDNGSNFT 93 (183)
T ss_dssp CTTEEEEEEEEETT----EE-EEEEEETTTTE-EEEEEES-SCCHHHHHHHHHHHHHHS--C---CCEEECSSHHHHH
T ss_pred CCCEEEEeccccCC----cE-EEEEEECCCCC-EEEEEeC-CccchHHHHHHHHHHHHc--C---CcEEEecCchhcc
Confidence 34589999998833 22 33444665444 4666544 445444444444444333 2 3899999987764
No 24
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=31.31 E-value=1.7e+02 Score=23.83 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=50.4
Q ss_pred HHHHHHhhhhCCCcEEEEEecccccccccccceEEEechhhHHHHHhcCceEEEEeceEEcCCCCce----eEEEEEEcC
Q 036307 121 LQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSV----MLVAVCRDG 196 (405)
Q Consensus 121 ~~~~~~l~~~npg~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~~~~~----ll~~~g~d~ 196 (405)
.+|++.++..||+-....-.+.+ ..+++|-|=.+.-++.| ++...|-..
T Consensus 16 ~~~L~~i~~~~~~~~l~l~~~~~---------------------------~~~l~~~t~~~svF~~p~~y~Vl~~~g~~~ 68 (172)
T 3tvz_A 16 ADFLKTIVKKHPSENILLMQGQE---------------------------NAILIHETSGDTVFQAPHAYEVIDQVGEIK 68 (172)
T ss_dssp HHHHHHHHHHCTTSEEEEEEESS---------------------------CEEEEEEESSCCCSSSCEEEEEEEEESCCS
T ss_pred HHHHHHHHHHCCCCceEEEEcCC---------------------------ceEEEEecCCCcccCCCCEEEEEeccCCCC
Confidence 37899999999988866555444 24667766445555555 455566555
Q ss_pred CCCeEEEEEEEeeccccccHHHHHHHHhhc
Q 036307 197 NDSVLPIAFCEVVEENLDSWAFFLKNLNYG 226 (405)
Q Consensus 197 ~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~ 226 (405)
+.....+..--|..+..+.+.-.+......
T Consensus 69 ~~m~~vin~~~V~pg~~~~Fe~~~~~~~~~ 98 (172)
T 3tvz_A 69 HPGFAVLNNIAVTQEGRPLFENKFKNRAGK 98 (172)
T ss_dssp CCSEEEEEEEECCGGGHHHHHHHHTSSHHH
T ss_pred CCcEEEEEEEEcCCCcHHHHHHHHHHhHHH
Confidence 555566666667778788766555444333
No 25
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=28.63 E-value=1.1e+02 Score=26.37 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=45.8
Q ss_pred eEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHHHH
Q 036307 171 MLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVE 250 (405)
Q Consensus 171 ~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~ 250 (405)
-|++-||-..+..|+- |-+-. +..++|.-+=+.+..+.. ....|-.|+.|+.+|-.+|..
T Consensus 42 mVvf~~g~p~k~~YRr------------------f~i~~-~g~DDya~m~Evl~RR~~-r~~~PDLiliDGGkgQl~~a~ 101 (220)
T 2nrt_A 42 LVVFEDGFPKKGDYRR------------------YKIEQ-DHPDDYESIRTVVKRRYS-KHPLPNLLFVDGGIGQVNAAI 101 (220)
T ss_dssp EEEEETTEECGGGCEE------------------EEEEC-SSCCHHHHHHHHHHHHHT-TSCCCSEEEESSSHHHHHHHH
T ss_pred EEEEeCCccChhhCce------------------eeCCC-CCCCHHHHHHHHHHHHhc-cCCCCCEEEEeCCHHHHHHHH
Confidence 4788888888888763 22222 334778777777777651 113578999999999999999
Q ss_pred hhcc
Q 036307 251 EFLP 254 (405)
Q Consensus 251 ~vfP 254 (405)
+++-
T Consensus 102 ~vl~ 105 (220)
T 2nrt_A 102 EALK 105 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 26
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=28.45 E-value=73 Score=25.50 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 036307 64 AKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDK 103 (405)
Q Consensus 64 ~~~~~~i~~~~~~~~~~i~~~l~~~~g~~~s~~~~~~ak~ 103 (405)
+.+++.+..++..+-.++.+.+++. |+.+|..+++|--+
T Consensus 8 ~~I~~li~~~~~~tq~eL~~~L~~~-G~~VtqaTisRDL~ 46 (149)
T 1b4a_A 8 IKIREIIMSNDIETQDELVDRLREA-GFNVTQATVSRDIK 46 (149)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHT-TCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHc-CCCcCHHHHHHHHH
Confidence 5677888888999999999999866 99999999987644
No 27
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=24.53 E-value=2.1e+02 Score=23.08 Aligned_cols=79 Identities=11% Similarity=0.043 Sum_probs=43.7
Q ss_pred CceEEEEeceEEcCCCC-----ceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHh----hcccccCCCCeEEEc
Q 036307 169 CRMLVIVDGWEIDSPYK-----SVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLN----YGLRLERGEGLCIMG 239 (405)
Q Consensus 169 ~~~vi~~D~t~~~~~~~-----~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~----~~~~~~~~~~~~iis 239 (405)
+.-||+.||..+-|+.. +=.-++++.++......-++....+...+.- -.+..|. .++ ....++.|.|
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~-Aei~Al~~al~~al--~~~~~v~I~T 82 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQM-AEIAAVEFACKKAL--KIPGPVLVIT 82 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHH-HHHHHHHHHHHHHH--HSSSCEEEEE
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHH-HHHHHHHHHHHHHh--cCCCeEEEEe
Confidence 44578999999987643 2244455555555555555555544444333 3333333 333 2334789999
Q ss_pred CCcccHHHHHHh
Q 036307 240 DGDNGIDEAVEE 251 (405)
Q Consensus 240 D~~~~l~~Ai~~ 251 (405)
|..-. .++|.+
T Consensus 83 DS~Yv-i~~it~ 93 (165)
T 2lsn_A 83 DSFYV-AESANK 93 (165)
T ss_dssp SCHHH-HHHHHT
T ss_pred ChHHH-Hhhhhh
Confidence 98653 334433
No 28
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=23.02 E-value=2.3e+02 Score=23.93 Aligned_cols=65 Identities=17% Similarity=0.027 Sum_probs=38.9
Q ss_pred eEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHH
Q 036307 171 MLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDE 247 (405)
Q Consensus 171 ~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~ 247 (405)
.++.+|.|+..+ . +.++.+|. ...+++++.+- .++.....-++..+.... ++..|.||+.....+
T Consensus 10 ~~w~~D~t~~~g----~-~~l~~vD~-~Sr~i~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~eF~s 74 (239)
T 1ex4_A 10 GIWQLDCTHLEG----K-VILVAVHV-ASGYIEAEVIP-AETGQETAYFLLKLAGRW-----PVKTIHTDNGSNFTG 74 (239)
T ss_dssp GEEEEEEEEETT----E-EEEEEECT-TTCCEEEECCS-SSSTTHHHHHHHHHHHHS-----CCCEEEECCCHHHHC
T ss_pred CEEEEeccccCC----e-EEEEEEEC-CCCeEEEEEeC-CCCHHHHHHHHHHHHHhc-----CCcEEEecCcHHHHH
Confidence 489999999832 2 23344455 34455666544 455555544444444333 258999999987643
No 29
>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*
Probab=22.79 E-value=3.3e+02 Score=22.54 Aligned_cols=80 Identities=5% Similarity=0.057 Sum_probs=56.7
Q ss_pred HHHHHHhhhhCCCcEEEEEecccccccccccceEEEechhhHHHHHhcCceEEEEeceEEcCCCCce----eEEEEEEcC
Q 036307 121 LQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSV----MLVAVCRDG 196 (405)
Q Consensus 121 ~~~~~~l~~~npg~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~~~~~----ll~~~g~d~ 196 (405)
.+|++.++..||+-...+-.+.+ ..+++|-|=.+.-++.| +|..+|-..
T Consensus 30 ~~~L~~I~~~~~dr~l~l~~~~~---------------------------~~~L~~et~~~svF~~p~~YeVL~s~G~l~ 82 (186)
T 3fj2_A 30 EHYLRQLMENYIGENVTLLQNFS---------------------------QSLLYQESTGEKLFQEGKEYRVLQSSGSLK 82 (186)
T ss_dssp HHHHHHHHHHTCSSSEEEEECSS---------------------------CEEEEEEEESCCTTCCSEEEEEEEEEECCC
T ss_pred HHHHHHHHHHCCCCceEEEEcCC---------------------------ccEEEEcCCCCcccCCCceEEEeeccCCcC
Confidence 47899999999988766555444 12456666555555554 677888888
Q ss_pred CCCeEEEEEEEeeccccccHHHHHHHHhhcc
Q 036307 197 NDSVLPIAFCEVVEENLDSWAFFLKNLNYGL 227 (405)
Q Consensus 197 ~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~ 227 (405)
++..+.+...-|..+..+.+.-.+......+
T Consensus 83 ~~gfvv~n~~~V~~g~~~~Fe~~f~~~~~~l 113 (186)
T 3fj2_A 83 GFGIVVFEYIQLRDEEIPIFLQMYQHASLHF 113 (186)
T ss_dssp SCSEEEEEEEECCGGGHHHHHHHHHHHHTTG
T ss_pred CCCEEEEEEEEcCcccHHHHHHHHHHhHHhh
Confidence 7777777777788888888777776666555
Done!