BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036308
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 267 bits (682), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 123/172 (71%), Positives = 146/172 (84%), Gaps = 1/172 (0%)
Query: 19 NPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFH 78
+P NP+VFFDV+IG GR+K+ELFAD+ PKTAENFRQFCTGE+RK G+P+GYKG FH
Sbjct: 7 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFH 66
Query: 79 RVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFI 138
RVIKDFMIQ GDF+ GDG+G SIY F DENF +H+ PGLLSMANSGP++NGCQFFI
Sbjct: 67 RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126
Query: 139 TCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
TC+KCDWLD KHVVFG+++ DGLLV+RKIENV TGPNN+PKL I++CGEM
Sbjct: 127 TCSKCDWLDGKHVVFGKII-DGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 231 bits (589), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 19 NPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFH 78
NP NP+VF D+ +G G+ K ELF +I PKT+ENFRQFCTGEY+ LPVGYK FH
Sbjct: 56 NPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFH 115
Query: 79 RVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFI 138
RVIK+FMIQ GDF+ +GSG SIYG KFDDENF KH GLLSMANSGPN+NGCQFFI
Sbjct: 116 RVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFI 175
Query: 139 TCAKCDWLDNKHVVFGRVL-GDGLLVVRKIENVATGPN-NRPKLACTIAECGEM 190
T KC+WLD K+VVFGR++ D LL+++KIENV+ P +PK+ + ECGE+
Sbjct: 176 TTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 196 bits (498), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 103/180 (57%), Positives = 120/180 (66%), Gaps = 5/180 (2%)
Query: 14 HVRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG---GLPV 70
+P NP NP VFFDV IG GRI +ELFADI PKTAENFR CTGE G G P+
Sbjct: 7 QAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPL 66
Query: 71 GYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPN 130
+KGC FHR+IK FMIQ GDF +G+G SIYG KF+DENF KH GLLSMAN+G N
Sbjct: 67 HFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSN 126
Query: 131 SNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
+NG QFFIT LD KHVVFG+V+ G+ V + +ENV +P C IAECGE+
Sbjct: 127 TNGSQFFITTVPTPHLDGKHVVFGQVI-KGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/168 (57%), Positives = 124/168 (73%), Gaps = 4/168 (2%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE--YRKGGLPVGYKGCQFHRVIK 82
VFFD+TIG +GRI MEL+ D+ PKTA NFR CTGE K G P+ +KG +FHR+I
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 83 DFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAK 142
+FMIQ GDF +G+G+G SIYG KF DENF KHTGPG+LSMAN+GPN+NG QFF+ K
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125
Query: 143 CDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
+WLD KHVVFGRV+ +GL VV+ +E+ + + +P C IA+CG++
Sbjct: 126 TEWLDGKHVVFGRVV-EGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 193 bits (490), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 119/168 (70%), Gaps = 7/168 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP V+ D+ IG PAGRI+M L +D+ P TAENFR CT E KG G+KG FHR+I
Sbjct: 11 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE--KG---FGFKGSSFHRII 65
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF +G+G SIYG KFDDENFI KHTGPGLLSMANSGPN+NG QFF+TC
Sbjct: 66 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 125
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 189
K DWLD KHVVFG V +GL V+R+IE + + +PK IA+CGE
Sbjct: 126 KTDWLDGKHVVFGEVT-EGLDVLRQIEAQGS-KDGKPKQKVIIADCGE 171
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 193 bits (490), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/169 (57%), Positives = 116/169 (68%), Gaps = 4/169 (2%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHR 79
NP+V+FD++IG PAGRI MELFAD P TAENFR CTGE G G P+ Y G FHR
Sbjct: 19 NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHR 78
Query: 80 VIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFIT 139
+I FMIQ GDF +GDG+G SIYG KF DENF+ H P LLSMAN+GPN+NG QFFIT
Sbjct: 79 IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 140 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECG 188
C WLD KHVVFG+VL +G+ VV+ IE + N +P + I G
Sbjct: 139 TVPCPWLDGKHVVFGKVL-EGMEVVKSIEKCGS-QNGKPTKSVCITASG 185
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 192 bits (489), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 119/168 (70%), Gaps = 7/168 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP V+ D+ IG PAGRI+M L +D+ P TAENFR CT E KG G+KG FHR+I
Sbjct: 3 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE--KG---FGFKGSSFHRII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF +G+G SIYG KFDDENFI KHTGPGLLSMANSGPN+NG QFF+TC
Sbjct: 58 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 189
K DWLD KHVVFG V +GL V+R+IE + + +PK IA+CGE
Sbjct: 118 KTDWLDGKHVVFGEVT-EGLDVLRQIEAQGS-KDGKPKQKVIIADCGE 163
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 192 bits (488), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 118/168 (70%), Gaps = 7/168 (4%)
Query: 23 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIK 82
P VFFD+ IG AGRI MEL +DI P+TAENFR CTGE GY C FHRVI
Sbjct: 11 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGER-----GFGYHNCCFHRVIP 65
Query: 83 DFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAK 142
FM Q GDF+KGDG+G SIYG KFDDENF +H G G+LSMANSGPN+NG QFFI K
Sbjct: 66 QFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTK 125
Query: 143 CDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
CDWLD KHVVFGRV+ DG VV+K+E+V + + + K I+ CGE+
Sbjct: 126 CDWLDGKHVVFGRVV-DGQNVVKKMESVGS-KSGKVKEPVIISRCGEL 171
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/179 (55%), Positives = 123/179 (68%), Gaps = 7/179 (3%)
Query: 17 PPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKG 74
P + NP VFFD++I AGRI MEL+AD PKTAENFR CTGE KG G P+ YK
Sbjct: 2 PGSMTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKS 61
Query: 75 CQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAK---HTGPGLLSMANSGPNS 131
FHRVI +FMIQ GDF +G+G+G SIYG F DE+F K HTG G LSMAN+GPN+
Sbjct: 62 SVFHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNT 121
Query: 132 NGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
NG QFFI A WLD KHVVFGRV+ DGL VV+K+E + + + + + +++CGE+
Sbjct: 122 NGSQFFICTAATPWLDGKHVVFGRVI-DGLDVVKKVERLGS-SSGKTRSRIVVSDCGEV 178
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 76
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 77 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 136
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 137 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 116/168 (69%), Gaps = 7/168 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP V+ D+ IG PAGRI+ L +D+ P TAENFR CT + KG G+KG FHR+I
Sbjct: 12 NPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCT--HEKG---FGFKGSSFHRII 66
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
F Q GDF +G+G SIYG KFDDENFI KHTGPGLLS ANSGPN+NG QFF+TC
Sbjct: 67 PQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCD 126
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 189
K DWLD KHVVFG V +GL V+R+IE + + +PK IA+CGE
Sbjct: 127 KTDWLDGKHVVFGEVT-EGLDVLRQIEAQGS-KDGKPKQKVIIADCGE 172
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 11 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 65
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 66 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 125
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 126 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 172
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 118 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 56
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 57 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 117 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 118 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 118 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+L+MAN+GPN+NG QFFI A
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTA 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 118 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FH++I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHKII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 118 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 56
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 57 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K WLD KHVVFG V +G+ +V +E + N + TIA+CG++
Sbjct: 117 KTKWLDGKHVVFGAVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD HVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 118 KTEWLDGXHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP+V+ DV P GR+ +EL AD+ PKTAENFR CTGE KG GYKG FHRVI
Sbjct: 4 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE--KG---FGYKGSTFHRVI 58
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM QAGDF +G+G SIYG +F DENF KH GPG+LSMAN+GPN+NG QFFI
Sbjct: 59 PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 118
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K DWLD KHVVFG V+ +G+ VV+KIE+ + + R I +CG++
Sbjct: 119 KTDWLDGKHVVFGHVI-EGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 165
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q G+F +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 58 PGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 118 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 56
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 57 PGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V ++ + N + TIA+CG++
Sbjct: 117 KTEWLDGKHVVFGKVK-EGMNIVEAMKRFGS-RNGKTSKKITIADCGQL 163
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP+V+ DV P GR+ +EL AD+ PKTAENFR CTGE KG GYKG FHRVI
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE--KG---FGYKGSTFHRVI 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM QAGDF +G+G SIYG +F DENF KH GPG+LSMAN+GPN+NG QFFI
Sbjct: 58 PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K DWLD KHVVFG V+ +G+ VV+KIE+ + + R I +CG++
Sbjct: 118 KTDWLDGKHVVFGHVI-EGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K WLD HVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 118 KTKWLDGXHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 7 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 61
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q GDF + +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 62 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 121
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K WLD HVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 122 KTKWLDGXHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 168
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP+V+ DV P GR+ +EL AD+ PKTAENFR CTGE KG GYKG FHRVI
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE--KG---FGYKGSTFHRVI 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM QAGDF +G+G SIYG +F DENF KH GPG+LSMAN+GPN+NG QFFI
Sbjct: 58 PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K DWLD KHVVFG V+ +G+ VV+KIE+ + + R I +CG++
Sbjct: 118 KTDWLDGKHVVFGHVI-EGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 164
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP+V+ DV P GR+ +EL AD+ PKTAENFR CTGE KG GYKG FHRVI
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE--KG---FGYKGSTFHRVI 56
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM QAGDF +G+G SIYG +F DENF KH GPG+LSMAN+GPN+NG QFFI
Sbjct: 57 PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 116
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K DWLD KHVVFG V+ +G+ VV+KIE+ + + R I +CG++
Sbjct: 117 KTDWLDGKHVVFGHVI-EGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 163
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 57
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
FM Q G+F +G+G SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI A
Sbjct: 58 PGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G+ +V +E + N + TIA+CG++
Sbjct: 118 KTEWLDGKHVVFGKVK-EGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 179 bits (455), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 111/164 (67%), Gaps = 7/164 (4%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
VFFD+T P G IK +LF D+ PKTA NFR CTGE KG GY G FHRVI DF
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGE--KG---FGYAGSHFHRVIPDF 58
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
M+Q GDF G+G+G SIYG KF DENF KH PGLLSMAN+GPN+NG QFFIT
Sbjct: 59 MLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTS 118
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECG 188
WLD KHVVFG V+ DG+ VV+ IE +G + +P+ IA+CG
Sbjct: 119 WLDGKHVVFGEVI-DGMNVVKAIEAEGSG-SGKPRSRIEIAKCG 160
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 179 bits (455), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 117/176 (66%), Gaps = 7/176 (3%)
Query: 16 RPPNPKNPI-VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKG 74
+ PK + V+FD+ IG GR+ + LF PKT +NF TGE KG GYK
Sbjct: 5 KKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE--KG---FGYKD 59
Query: 75 CQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGC 134
+FHRVIKDFMIQ GDF +GDG+G SIYG +F DENF KH GPG +SMAN+G ++NG
Sbjct: 60 SKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGS 119
Query: 135 QFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
QFFIT K WLD KHVVFG+VL +G+ VVRK+E T ++P TIA+CG++
Sbjct: 120 QFFITTVKTAWLDGKHVVFGKVL-EGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 179 bits (454), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 117/176 (66%), Gaps = 7/176 (3%)
Query: 16 RPPNPKNPI-VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKG 74
+ PK + V+FD+ IG GR+ + LF PKT +NF TGE KG GYK
Sbjct: 5 KKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE--KG---FGYKD 59
Query: 75 CQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGC 134
+FHRVIKDFMIQ GDF +GDG+G SIYG +F DENF KH GPG +SMAN+G ++NG
Sbjct: 60 SKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGS 119
Query: 135 QFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
QFFIT K WLD KHVVFG+VL +G+ VVRK+E T ++P TIA+CG++
Sbjct: 120 QFFITTVKTAWLDGKHVVFGKVL-EGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 115/166 (69%), Gaps = 7/166 (4%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
V+FD+TIG P GR+ + LF + PKT ENF+Q +GE GYKG FHRVI++F
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGEN-----GFGYKGSIFHRVIRNF 62
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
MIQ GDF DG+G SIYG +FDDEN KH G +SMAN+GPNSNG QFF+T A
Sbjct: 63 MIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTP 121
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD +HVVFG+V+ +G+ VV+K+EN TG N++PK A I +CG +
Sbjct: 122 WLDGRHVVFGKVV-EGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 112/166 (67%), Gaps = 6/166 (3%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
V+FD+ IG GR+ LF PKT +NF TGE KG GYK +FHRVIKDF
Sbjct: 18 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE--KG---FGYKNSKFHRVIKDF 72
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
MIQ GDF +GDG+G SIYG +F DENF KH GPG +SMAN+G ++NG QFFIT K
Sbjct: 73 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 132
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD KHVVFG+VL +G+ VVRK+E+ T ++P IA+CG++
Sbjct: 133 WLDGKHVVFGKVL-EGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 110/166 (66%), Gaps = 6/166 (3%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
VFFDV IG GRI + LF ++ PKT ENF TGE KG GYKG FHRVIKDF
Sbjct: 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGE--KG---YGYKGSIFHRVIKDF 64
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
MIQ GDF DG+G SIYG F DENF KH G G +SMAN+GP++NG QFFIT K
Sbjct: 65 MIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 124
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD KHVVFG+VL DG+ VV IE AT ++RP CTI G++
Sbjct: 125 WLDGKHVVFGKVL-DGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 112/166 (67%), Gaps = 6/166 (3%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
V+FD+ IG GR+ LF PKT +NF TGE KG GYK +FHRVIKDF
Sbjct: 8 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE--KG---FGYKNSKFHRVIKDF 62
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
MIQ GDF +GDG+G SIYG +F DENF KH GPG +SMAN+G ++NG QFFIT K
Sbjct: 63 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 122
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD KHVVFG+VL +G+ VVRK+E+ T ++P IA+CG++
Sbjct: 123 WLDGKHVVFGKVL-EGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG---GLPVGYKGCQFHRVI 81
VF DVTI AGRI MEL+ DIAP+T NF CTG G G P+ YKG FHRVI
Sbjct: 9 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI 68
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
K+FMIQ GDF KGDG+G SIYG FDDE F+ KH P ++SMAN GPN+NG QFFIT
Sbjct: 69 KNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
L+N HVVFG+V+ G VV KIE + T NRP I CGE+
Sbjct: 129 PAPHLNNIHVVFGKVV-SGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/166 (55%), Positives = 112/166 (67%), Gaps = 7/166 (4%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
V+FDV P GR+ +L+ DI PKTAENFR CTGE KG GY G FHRVI DF
Sbjct: 4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGE--KG---FGYAGSPFHRVIPDF 58
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
M+Q GDF G+G+G SIYG KF DENF H PGLLSMAN+GPN+NG QFFIT C
Sbjct: 59 MLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCP 118
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD KHVVFG V+ DG +V+K+E++ + P+ K +A+ GE+
Sbjct: 119 WLDGKHVVFGEVV-DGYDIVKKVESLGS-PSGATKARIVVAKSGEL 162
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 177 bits (448), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/166 (56%), Positives = 110/166 (66%), Gaps = 6/166 (3%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
VFFDV IG GRI + LF + PKT ENF TGE KG GYKG +FHRVIKDF
Sbjct: 18 VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGE--KG---YGYKGSKFHRVIKDF 72
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
MIQ GD GDG+G SIYG F DENF KH G G +SMAN+GP++NG QFFIT K
Sbjct: 73 MIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 132
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD KHVVFG+V+ DG+ VV IE AT ++RP C+I G++
Sbjct: 133 WLDGKHVVFGKVI-DGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVI 81
NP VFFD+ + P GR+ ELFAD PKTAENFR TGE KG GYKG FHR+I
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRII 56
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
F Q GDF + +G+G SIYG KF+DENFI KHTGPG+LS AN+GPN+NG QFFI A
Sbjct: 57 PGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTA 116
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K +WLD KHVVFG+V +G +V E + N + TIA+CG++
Sbjct: 117 KTEWLDGKHVVFGKVK-EGXNIVEAXERFGS-RNGKTSKKITIADCGQL 163
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 173 bits (438), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 114/173 (65%), Gaps = 7/173 (4%)
Query: 18 PNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQF 77
P+ NP+VFFDV P GRI MELF++I P+TAENFR CTGE KG G+K F
Sbjct: 2 PHMTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGE--KG---FGFKNSIF 56
Query: 78 HRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFF 137
HRVI DF+ Q GD K DG+G SIYG KF+DENF KHTGPGLLSMAN G N+N QF
Sbjct: 57 HRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFV 116
Query: 138 ITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
IT K + LD KHVVFG V DG+ V+KIE+ + P TI ECG++
Sbjct: 117 ITLKKAEHLDFKHVVFGFV-KDGMDTVKKIESFGS-PKGSVCRRITITECGQI 167
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 107/169 (63%), Gaps = 12/169 (7%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCT---GEYRKGGLPVGYKGCQFHRVI 81
V+FD+ IG P GRI + LF PKTA NF + GE GY G +FHRVI
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGE--------GYPGSKFHRVI 60
Query: 82 KDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCA 141
DFMIQ GDF +GDG+G SIYG KF DENF KH G G LSMAN+G ++NG QFFIT
Sbjct: 61 ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 142 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
K WLD +HVVFG++L +G+ VVRKIE P +RPK IA G +
Sbjct: 121 KTPWLDGRHVVFGKIL-EGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 169 bits (429), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 21 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE-YRKGGLPVGYKGCQFHR 79
K VFFD++I AGRI ELF+DI P+T ENFR CTGE G + YK FHR
Sbjct: 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 80 VIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFIT 139
+I FM Q GD G+GSG SIYG F DENF KH PGLLSMAN+GPN+N QFFIT
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121
Query: 140 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
C WLD KHVVFG+V+ +G+ VVR++E + K + I +CGE+
Sbjct: 122 LVPCPWLDGKHVVFGKVI-EGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 169 bits (429), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 107/166 (64%), Gaps = 7/166 (4%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
V+FDV I + P GRI + LF AP T ENFRQ CTGE+ GYK FHRVI++F
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG-----FGYKDSIFHRVIQNF 68
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
MIQ GDF DG+G SIYG KF DEN KH G LSMAN+GPN+NG QFFIT A
Sbjct: 69 MIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTP 127
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD +HVVFG+VL DG+ VV +IE T ++RP I GE+
Sbjct: 128 WLDGRHVVFGKVL-DGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 109/173 (63%), Gaps = 4/173 (2%)
Query: 21 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGL---PVGYKGCQF 77
+ P FFD+ I PAGR+ ELF+D+ PKT ENFR CTGE G P+ YK C F
Sbjct: 25 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 84
Query: 78 HRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFF 137
HRV+KDFM+Q GDF +G+G G SIYG F+DE+F KH LLSMAN G ++NG QFF
Sbjct: 85 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFF 144
Query: 138 ITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
IT LD HVVFG+V+ G VVR+IEN T ++P I CGE+
Sbjct: 145 ITTKPTPHLDGHHVVFGQVI-SGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 106/166 (63%), Gaps = 7/166 (4%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
V+FDV I + P GRI + LF AP T ENFRQ CTGE+ GYK FHRVI++F
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG-----FGYKDSIFHRVIQNF 68
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
MIQ GDF DG+G SIYG KF DEN KH G LSMAN+GPN+NG QFFIT A
Sbjct: 69 MIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTP 127
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD HVVFG+VL DG+ VV +IE T ++RP I GE+
Sbjct: 128 WLDGAHVVFGKVL-DGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 109/173 (63%), Gaps = 4/173 (2%)
Query: 21 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGL---PVGYKGCQF 77
+ P FFD+ I PAGR+ ELF+D+ PKT ENFR CTGE G P+ YK C F
Sbjct: 8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 67
Query: 78 HRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFF 137
HRV+KDFM+Q GDF +G+G G SIYG F+DE+F KH LLSMAN G ++NG QFF
Sbjct: 68 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 138 ITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
IT LD HVVFG+V+ G VVR+IEN T ++P I CGE+
Sbjct: 128 ITTKPTPHLDGHHVVFGQVI-SGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 166 bits (421), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 21 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE-YRKGGLPVGYKGCQFHR 79
K VFFD++I AGRI ELF+DI P+T ENFR CTGE G + YK FHR
Sbjct: 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 80 VIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFIT 139
+I FM Q GD G+GSG SIYG F DENF KH PGLLSMAN+GPN+N QF IT
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLIT 121
Query: 140 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 189
C WLD KHVVFG+V+ +G+ VVR++E + K + I +CGE
Sbjct: 122 LVPCPWLDGKHVVFGKVI-EGMNVVREMEKEGA-KSGYVKRSVVITDCGE 169
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
VFF+++I P GRI +L+ + PKTA+NFR+ TG++ GYK FHRVI F
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH-----GFGYKDSIFHRVIPQF 59
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
M+Q GDF + +G+G SIYG KF DENF KHT PGLLSMAN+G N+NG QFFIT
Sbjct: 60 MLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTS 119
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD KHVVFG V+ +GL +VRK+E + + + I +CG +
Sbjct: 120 WLDGKHVVFGEVI-EGLDIVRKVEGKGS-ASGKTNATIKITDCGTV 163
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
VFF+++I P GRI +L+ + PKTA+NFR+ TG++ GYK FHRVI F
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH-----GFGYKDSIFHRVIPQF 60
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
M+Q GDF + +G+G SIYG KF DENF KHT PGLLSMAN+G N+NG QFFIT
Sbjct: 61 MLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTS 120
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
WLD KHVVFG V+ +GL +VRK+E + + + I +CG +
Sbjct: 121 WLDGKHVVFGEVI-EGLDIVRKVEGKGS-ASGKTNATIKITDCGTV 164
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 108/173 (62%), Gaps = 4/173 (2%)
Query: 21 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGL---PVGYKGCQF 77
+ P FFD+ I PAGR+ ELF+D+ PKT ENFR CTGE G P+ YK F
Sbjct: 8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLF 67
Query: 78 HRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFF 137
HRV+KDFM+Q GDF +G+G G SIYG F+DE+F KH LLSMAN G ++NG QFF
Sbjct: 68 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 138 ITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
IT LD HVVFG+V+ G VVR+IEN T ++P I CGE+
Sbjct: 128 ITTKPTPHLDGHHVVFGQVI-SGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 152 bits (385), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 105/172 (61%), Gaps = 4/172 (2%)
Query: 22 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG---GLPVGYKGCQFH 78
+P FD+ I P GRI +LF+DI PKT +NF C+GE G G + YKG FH
Sbjct: 19 SPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFH 78
Query: 79 RVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFI 138
RV+K+FMIQ GDF +G+G G SIYG F DENFI KH LLSMAN G ++NG QFFI
Sbjct: 79 RVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFI 138
Query: 139 TCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190
T LD HVVFG V+ G V+ +IEN+ T +RP + +CG +
Sbjct: 139 TTKPAPHLDGVHVVFGLVI-SGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 152 bits (385), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 107/177 (60%), Gaps = 20/177 (11%)
Query: 25 VFFDVT---IGT--IPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHR 79
VFFDV +GT GRI LF PKTA+NFR+ C R G GY+ FHR
Sbjct: 5 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCK---RPAGE--GYRESTFHR 59
Query: 80 VIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFIT 139
+I +FMIQ GDF +G+G+G SIYG KF DENF KH G+LSMAN+GPN+NG QFFIT
Sbjct: 60 IIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFIT 119
Query: 140 CAKCDWLDNKHVVFGRVLGD-GLLVVRKIENVATG-----PNNRPKLACTIAECGEM 190
A WLD KHVVFG V + VV++IE + + N RPK I CGE+
Sbjct: 120 TAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPK----IVNCGEL 172
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 25 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF 84
V+FDV GRI M+L DI PKTA+NFR C E KG GYKG FHR+I F
Sbjct: 30 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLC--ERPKG---EGYKGSTFHRIIPGF 84
Query: 85 MIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCD 144
M+Q GD+ +G+G SIYG KF DENF KHT G+LSMAN G ++NG QFFIT K
Sbjct: 85 MVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQ 144
Query: 145 WLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPK-LACTIAECG 188
WLD KHVVFG V+ +G+ VV KI + K I +CG
Sbjct: 145 WLDEKHVVFGEVV-EGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 16/165 (9%)
Query: 15 VRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKG 74
+ P + + P V+ + ++G I +EL+ APKT +NF + Y Y G
Sbjct: 4 IPPDSWQPPNVYLETSMGII-----VLELYWKHAPKTCKNFAELARRGY--------YNG 50
Query: 75 CQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNG 133
+FHR+IKDFMIQ GD G G G SIYG +F+DE + K TG G+L+MAN+GP++NG
Sbjct: 51 TKFHRIIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNG 109
Query: 134 CQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 178
QFF+T A WLD KH +FGRV G+ +V ++ V T +RP
Sbjct: 110 SQFFVTLAPTQWLDGKHTIFGRVC-QGIGMVNRVGMVETNSQDRP 153
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 16/165 (9%)
Query: 15 VRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKG 74
+ P + + P V+ + ++G I +EL+ APKT +NF + Y Y G
Sbjct: 4 IPPDSWQPPNVYLETSMGII-----VLELYWKHAPKTCKNFAELARRGY--------YNG 50
Query: 75 CQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNG 133
+FHR+IKDFMIQ GD G G G SIYG +F+DE + K TG G+L+MAN+GP++NG
Sbjct: 51 TKFHRIIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNG 109
Query: 134 CQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 178
QFF+T A WLD KH +FGRV G+ +V ++ V T +RP
Sbjct: 110 SQFFVTLAPTQWLDGKHTIFGRVC-QGIGMVNRVGMVETNSQDRP 153
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 16/165 (9%)
Query: 15 VRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKG 74
+ P + + P V+ + ++G I +EL+ APKT +NF + Y Y G
Sbjct: 4 IPPDSWQPPNVYLETSMGII-----VLELYWKHAPKTCKNFAELARRGY--------YNG 50
Query: 75 CQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNG 133
+FHR+IKDFMIQ GD G G G SIYG +F+DE + K TG G+L+MAN+GP++NG
Sbjct: 51 TKFHRIIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNG 109
Query: 134 CQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 178
QFF+T A WLD KH +FGRV G+ +V ++ V T +RP
Sbjct: 110 SQFFVTLAPTQWLDGKHTIFGRVC-QGIGMVNRVGMVETNSQDRP 153
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 88/160 (55%), Gaps = 18/160 (11%)
Query: 20 PKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHR 79
PK+ I++ G I + LF KT +NF Y Y C FHR
Sbjct: 5 PKSAIIY-------TTMGDIHISLFYKECKKTVQNFSVHSINGY--------YNNCIFHR 49
Query: 80 VIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENF-IAKHTGPGLLSMANSGPNSNGCQFFI 138
VIK FM+Q GD GDG+G SI+G++F+DE F H+ P ++SMAN GPN+NG QFFI
Sbjct: 50 VIKHFMVQTGD-PSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFI 108
Query: 139 TCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 178
T C WLD KH VFG+V G +V IE V T ++P
Sbjct: 109 TTVPCPWLDFKHTVFGKVT-QGSKIVLDIEKVRTDKRDKP 147
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 81/148 (54%), Gaps = 11/148 (7%)
Query: 28 DVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQ 87
D I G I +LF PKT ENF Y Y G FHR+IK FMIQ
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQ 73
Query: 88 AGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWL 146
GD G G G SI+G +F+DE + +H P LSMAN+G N+NG QFFIT WL
Sbjct: 74 TGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWL 132
Query: 147 DNKHVVFGRVLGDGLLVVRKIENVATGP 174
DNKH VFGRV G+ VV++I NV P
Sbjct: 133 DNKHTVFGRVT-KGMEVVQRISNVKVNP 159
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 87/143 (60%), Gaps = 12/143 (8%)
Query: 29 VTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQA 88
VT+ T G IK+E+F + PKT ENF C Y Y GC FHR IK FM+Q
Sbjct: 3 VTLHT-DVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQT 53
Query: 89 GDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLD 147
GD G G G SI+G KF+DE + KH G++SMAN+GPN+NG QFFIT K LD
Sbjct: 54 GD-PTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLD 112
Query: 148 NKHVVFGRVLGDGLLVVRKIENV 170
K+ VFG+V+ DGL + ++E +
Sbjct: 113 MKYTVFGKVI-DGLETLDELEKL 134
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 87/143 (60%), Gaps = 12/143 (8%)
Query: 29 VTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQA 88
VT+ T G IK+E+F + PKT ENF C Y Y GC FHR IK FM+Q
Sbjct: 9 VTLHT-DVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQT 59
Query: 89 GDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLD 147
GD G G G SI+G KF+DE + KH G++SMAN+GPN+NG QFFIT K LD
Sbjct: 60 GD-PTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLD 118
Query: 148 NKHVVFGRVLGDGLLVVRKIENV 170
K+ VFG+V+ DGL + ++E +
Sbjct: 119 MKYTVFGKVI-DGLETLDELEKL 140
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDG 96
G + +EL D+ PKT ENF + C Y Y G FHR I++F+IQ GD G G
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGD-PTGTG 79
Query: 97 SGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGR 155
+G S +G F DE HTG G+LSMANSGPNSN QFFIT C +LD KH +FGR
Sbjct: 80 TGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGR 139
Query: 156 VLGDGLLVVRKIENVATGP-NNRPKLACTI 184
V+G G V+ +ENV + P +RPK I
Sbjct: 140 VVG-GFDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDG 96
G ++EL+ +PKT NF C + Y FHRVI +F+IQ GD G G
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLCEMGF--------YDNTIFHRVIPNFVIQGGD-PTGTG 98
Query: 97 SGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGR 155
G SIYG F+DE N KHTG G+LSM+N+GPN+N QFFIT A LD KH +F R
Sbjct: 99 KGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFAR 158
Query: 156 VLGDGLLVVRKIENVATGPNNRP 178
V + + I +V T N+P
Sbjct: 159 V-SKNMTCIENIASVQTTATNKP 180
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 20 PKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHR 79
P N V T AG I +EL++ APK NF Q C Y Y FHR
Sbjct: 22 PTNGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCLEAY--------YDNTIFHR 68
Query: 80 VIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFI 138
V+ F++Q GD G GSG SIYG F DE + + GL++MAN+G + NG QFF
Sbjct: 69 VVPGFIVQGGD-PTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFF 127
Query: 139 TCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAEC 187
T + D L+NKH +FG+V GD + + ++ V + RP I C
Sbjct: 128 TLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTG--EYRK---GGLPVG--YKGCQFHRVIKDFMIQAG 89
G IK+ LF + APKT NF G +Y G P G Y G FHRVI+ FMIQ G
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 90 DFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNK 149
D G + +F E K P LL+MAN+GP +NG QFFIT K L+ +
Sbjct: 93 DPTGTGRGGPGYKFADEFHPELQFDK---PYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 150 HVVFGRVL-GDGLLVVRKIENVATGPNNRP 178
H +FG V+ + VV I AT N+RP
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRP 179
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 15/147 (10%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDG 96
G +K ELF PK +NF Y YK FH+ IK F+IQ GD G G
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSASGY--------YKNTIFHKNIKGFIIQGGD-PTGTG 76
Query: 97 SGCTSIYGHKFDDENFIA-KHTGPGLLSMANSG----PNSNGCQFFITCAKCDWLDNKHV 151
G SIYG FDDE + K+ G+LSMA+ G PN+NG QFFIT + L+ ++V
Sbjct: 77 KGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYV 136
Query: 152 VFGRVLGDGLLVVRKIENVATGPNNRP 178
+FG+++ DG + +EN + +++P
Sbjct: 137 IFGKLI-DGFETLNTLENCPSDKSHKP 162
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 23/149 (15%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDG 96
G + +EL AD+AP+ ++F + C +Y + FHR I++FMIQ G
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY--------FDDTIFHRCIRNFMIQGGRAELRQP 67
Query: 97 SGCTSIY-----------GHKFDDE--NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKC 143
S + G F+DE N + H G G+LSMAN G +SN +FFIT C
Sbjct: 68 SKKKEVQQSPRSISGFPGGAPFEDEFDNRLV-HQGIGVLSMANDGKHSNLSEFFITFKSC 126
Query: 144 DWLDNKHVVFGRVLGDGLLVVRKIENVAT 172
+ L+NKH +FGRV+G GL V+R+ E + T
Sbjct: 127 EHLNNKHTIFGRVVG-GLDVLRQWEKLET 154
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFL-KGD 95
G + +EL+A P NF Q C Y Y FHRV+KDF++Q GD G
Sbjct: 31 GDLDVELWARECPLACRNFVQLCLEGY--------YVNTIFHRVVKDFIVQGGDPTGTGR 82
Query: 96 GSGCTSIYGHKFDDENF-IAKHTGPGLLSMANSGPNS--------------NGCQFFITC 140
G T+ G FD E K GL+ +AN G +S NG QFFIT
Sbjct: 83 GGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITL 142
Query: 141 AKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 178
A+ D L+N + +FG+V G L + K ++ G +RP
Sbjct: 143 ARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRP 180
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 87/199 (43%), Gaps = 30/199 (15%)
Query: 17 PPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE-YRKGGLPVG---- 71
P + KNP V+ D+ + GR++++LF D P ENF Q G+ YR G
Sbjct: 9 PNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKY 68
Query: 72 -------YKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHK-----FDDENFIAKHTGP 119
Y+GC+FH V+ + I +GD +GS ++Y + F D + H
Sbjct: 69 NRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESK 126
Query: 120 GLLSMA----NSGPNSNGCQFFITCAK------CDWLDNKHVVFGRVLGDGLLVVRKIEN 169
GLLS+ SG F IT D LD VV G+V G GL V+ KI +
Sbjct: 127 GLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYG-GLDVLDKINS 185
Query: 170 VATGPNNRPKLACTIAECG 188
+ R +I +CG
Sbjct: 186 MIKPYAGRKYPTFSIGKCG 204
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDG 96
G I ++LFAD AP+TA NF Q+ + Y G FHRVI FMIQ G F G
Sbjct: 9 GTITLKLFADKAPETAANFEQYVKDGH--------YDGTIFHRVIDGFMIQGGGFEPGMK 60
Query: 97 SGCTSIYGHKFDDENFIAKHTGPGLLSMANS-GPNSNGCQFFITCAKCDWLDNK------ 149
T +E ++MA + P+S QFFI +LD+
Sbjct: 61 QKSTRA---PIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHG 117
Query: 150 --HVVFGRVLGDGLLVVRKIENVATG 173
+ VFG V+ +G VV +I++VATG
Sbjct: 118 WGYAVFGEVV-EGTDVVDRIKSVATG 142
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDG 96
G I ++ F D AP+T +NF +C R+G Y FHRVI FMIQ G F G
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----REGF----YNNTIFHRVINGFMIQGGGFEPGMK 60
Query: 97 SGCTSIYGHKFDDENFIAKHTGPGLLSMANS-GPNSNGCQFFITCAKCDWLDNK------ 149
T +E G L+MA + P+S QFFI D+L+
Sbjct: 61 QKATK---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQG 117
Query: 150 --HVVFGRVLGDGLLVVRKIENVATG 173
+ VF V+ DG+ VV KI+ VATG
Sbjct: 118 WGYCVFAEVV-DGMDVVDKIKGVATG 142
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 70/152 (46%), Gaps = 33/152 (21%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDG 96
G IK+EL APKT ENF + +KG Y G FHRVI FMIQ G F G
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYV----KKGH----YDGTIFHRVINGFMIQGGGFEPGLK 64
Query: 97 SGCTSIYGHKFDDENFIAKHTGPGL------LSMANSG-PNSNGCQFFITCAKCDWLDNK 149
T IA GL ++MA + P+S QFFI ++L++
Sbjct: 65 QKPTDAP---------IANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHS 115
Query: 150 --------HVVFGRVLGDGLLVVRKIENVATG 173
+ VFG+V+ +G +V KI+ V TG
Sbjct: 116 SPTPQGWGYAVFGKVV-EGQDIVDKIKAVKTG 146
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDG 96
G I ++ F D AP+T +NF +C R+G Y FHRVI FMIQ G F G
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----REGF----YNNTIFHRVINGFMIQGGGFEPGMK 60
Query: 97 SGCTSIYGHKFDDENFIAKHTGPGLLSMANS-GPNSNGCQFFITCAKCDWLDNK------ 149
T +E G L+MA + P+S QFFI D+L+
Sbjct: 61 QKATK---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQG 117
Query: 150 --HVVFGRVLGDGLLVVRKIENVATG 173
+ VF V+ DG+ V KI+ VATG
Sbjct: 118 WGYCVFAEVV-DGMDEVDKIKGVATG 142
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFL 92
T AG I++EL AP + +NF + + Y FHRVI FMIQ G F
Sbjct: 10 TTSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFT 61
Query: 93 KGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSG-PNSNGCQFFITCAKCDWLDN--- 148
+ + +E G ++MA + +S QFFI A +LD+
Sbjct: 62 EQMQQKKPN---PPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQR 118
Query: 149 --KHVVFGRVLGDGLLVVRKIENVAT 172
+ VFG+V+ G+ V KI V T
Sbjct: 119 DFGYAVFGKVV-KGMDVADKISQVPT 143
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFL 92
T AG I++EL AP + +NF + + Y FHRVI FMIQ G F
Sbjct: 10 TTSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFT 61
Query: 93 KGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSG-PNSNGCQFFITCAKCDWLDN--- 148
+ + +E G ++MA + +S QFFI A +LD+
Sbjct: 62 EQMQQKKPN---PPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQR 118
Query: 149 --KHVVFGRVLGDGLLVVRKIENVAT 172
+ VFG+V+ G+ V KI V T
Sbjct: 119 DFGYAVFGKVV-KGMDVADKISQVPT 143
>pdb|3P4E|A Chain A, Phosphoribosylformylglycinamidine Cyclo-Ligase From Vibrio
Cholerae
Length = 349
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 116 HTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKI 167
G L+++ +SGP+SNG + D + G+ +G+ LL KI
Sbjct: 180 QVGDALIAVGSSGPHSNGYSLVRKILEVSKADKNERLAGKTIGEHLLAPTKI 231
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 112 FIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVA 171
F+A+ GP L + N G ++G F++ A L N+H+ F LG G ++R E +A
Sbjct: 42 FLAR--GPSGLLLYN-GQKTDGKGDFVSLA----LHNRHLEFRYDLGKGAAIIRSKEPIA 94
Query: 172 TG 173
G
Sbjct: 95 LG 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,249,890
Number of Sequences: 62578
Number of extensions: 264915
Number of successful extensions: 605
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 78
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)