Query 036308
Match_columns 190
No_of_seqs 138 out of 1263
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 11:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 5.7E-60 1.2E-64 390.8 15.7 172 18-190 4-178 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 6.6E-56 1.4E-60 339.2 18.1 173 13-190 30-202 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 4.9E-56 1.1E-60 321.5 14.2 171 19-190 7-177 (177)
4 PLN03149 peptidyl-prolyl isome 100.0 3.8E-53 8.3E-58 331.1 21.2 185 6-190 2-186 (186)
5 PTZ00060 cyclophilin; Provisio 100.0 2.4E-49 5.1E-54 309.2 21.3 174 15-190 8-182 (183)
6 cd01926 cyclophilin_ABH_like c 100.0 2.2E-49 4.7E-54 304.8 20.1 164 23-188 1-164 (164)
7 PTZ00221 cyclophilin; Provisio 100.0 2.8E-48 6E-53 313.4 20.7 168 18-190 48-219 (249)
8 KOG0111 Cyclophilin-type pepti 100.0 1.3E-47 2.9E-52 298.3 10.6 166 18-190 132-297 (298)
9 KOG0881 Cyclophilin type pepti 100.0 2.6E-47 5.7E-52 273.1 10.0 158 16-188 3-161 (164)
10 cd01927 cyclophilin_WD40 cyclo 100.0 2E-45 4.3E-50 278.3 17.2 144 33-186 3-147 (148)
11 cd01923 cyclophilin_RING cyclo 100.0 4E-45 8.7E-50 279.7 18.7 147 34-190 6-153 (159)
12 cd01928 Cyclophilin_PPIL3_like 100.0 5.3E-45 1.2E-49 277.3 18.3 145 34-188 7-152 (153)
13 COG0652 PpiB Peptidyl-prolyl c 100.0 8.4E-45 1.8E-49 274.7 16.1 145 33-189 5-156 (158)
14 cd01921 cyclophilin_RRM cyclop 100.0 1.7E-44 3.8E-49 278.0 17.6 148 33-190 3-159 (166)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 2.2E-44 4.9E-49 271.9 16.7 143 33-186 3-146 (146)
16 cd01925 cyclophilin_CeCYP16-li 100.0 2.6E-43 5.7E-48 272.5 19.1 157 20-190 3-160 (171)
17 PRK10903 peptidyl-prolyl cis-t 100.0 7.8E-42 1.7E-46 268.0 18.9 156 18-190 24-189 (190)
18 KOG0883 Cyclophilin type, U bo 100.0 5.3E-42 1.1E-46 285.1 12.2 154 23-189 276-430 (518)
19 PRK10791 peptidyl-prolyl cis-t 100.0 1.8E-40 3.9E-45 254.9 18.1 145 33-189 5-162 (164)
20 KOG0882 Cyclophilin-related pe 100.0 1.2E-41 2.6E-46 287.5 10.7 151 28-188 405-556 (558)
21 cd01920 cyclophilin_EcCYP_like 100.0 3.1E-40 6.7E-45 251.7 16.7 141 34-186 4-154 (155)
22 PF00160 Pro_isomerase: Cyclop 100.0 1.1E-39 2.4E-44 248.3 19.1 150 26-189 1-155 (155)
23 cd00317 cyclophilin cyclophili 100.0 1E-39 2.2E-44 246.3 17.2 142 34-186 4-146 (146)
24 KOG0884 Similar to cyclophilin 100.0 1.4E-40 3.1E-45 237.1 11.0 145 33-187 6-152 (161)
25 KOG0865 Cyclophilin type pepti 100.0 4.7E-40 1E-44 250.7 10.0 163 21-190 2-167 (167)
26 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.4E-38 5.3E-43 262.0 12.8 158 19-190 9-167 (439)
27 cd01924 cyclophilin_TLP40_like 100.0 1.6E-36 3.4E-41 235.4 14.7 129 33-170 3-165 (176)
28 KOG0415 Predicted peptidyl pro 100.0 6.3E-35 1.4E-39 240.5 13.4 148 33-190 6-162 (479)
29 KOG0882 Cyclophilin-related pe 97.6 6.5E-05 1.4E-09 65.3 4.0 140 38-187 113-259 (558)
30 TIGR03268 methan_mark_3 putati 97.1 0.0033 7.1E-08 55.6 8.4 104 37-170 201-304 (503)
31 PRK00969 hypothetical protein; 97.0 0.0034 7.4E-08 55.6 8.1 104 37-170 204-307 (508)
32 COG4070 Predicted peptidyl-pro 96.8 0.0034 7.3E-08 54.0 6.2 105 36-170 202-306 (512)
33 TIGR03268 methan_mark_3 putati 96.7 0.015 3.2E-07 51.5 9.9 116 37-170 375-496 (503)
34 PRK00969 hypothetical protein; 96.1 0.054 1.2E-06 48.2 9.8 114 37-170 378-498 (508)
35 COG4070 Predicted peptidyl-pro 94.0 0.25 5.5E-06 42.8 7.3 115 38-170 377-499 (512)
36 PF12903 DUF3830: Protein of u 94.0 0.36 7.9E-06 36.3 7.3 107 37-169 8-130 (147)
37 PF05913 DUF871: Bacterial pro 69.4 3.9 8.4E-05 35.4 2.5 52 117-169 298-349 (357)
38 PF04126 Cyclophil_like: Cyclo 51.6 18 0.00039 26.1 3.0 47 117-169 60-113 (120)
39 PF08415 NRPS: Nonribosomal pe 38.6 41 0.00088 20.7 2.8 26 159-186 5-30 (58)
40 PF12396 DUF3659: Protein of u 32.0 55 0.0012 21.0 2.6 29 146-177 16-44 (64)
41 COG1765 Predicted redox protei 28.0 1.3E+02 0.0028 22.0 4.5 25 39-63 92-116 (137)
42 PF11314 DUF3117: Protein of u 24.5 1.2E+02 0.0025 18.4 2.8 29 20-50 14-42 (51)
43 cd01271 Fe65_C Fe65 C-terminal 23.4 51 0.0011 24.1 1.4 29 159-187 18-49 (124)
44 PF06138 Chordopox_E11: Chordo 21.9 3.3E+02 0.0072 20.0 7.2 42 35-83 11-61 (130)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-60 Score=390.80 Aligned_cols=172 Identities=59% Similarity=0.994 Sum_probs=166.5
Q ss_pred CCCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccc---cCCCcccccCceEEEEEcCceeeeccccCC
Q 036308 18 PNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYR---KGGLPVGYKGCQFHRVIKDFMIQAGDFLKG 94 (190)
Q Consensus 18 ~~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~---~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~ 94 (190)
+...+|+|||||++++.+.|||+||||.|.||+||+||..||+|..| ..+++++|+|+.||||+++|||||||+..+
T Consensus 4 ~~~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~g 83 (372)
T KOG0546|consen 4 SVRTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEG 83 (372)
T ss_pred ccCCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccC
Confidence 33479999999999999999999999999999999999999999987 456889999999999999999999999999
Q ss_pred CCCCccccCCccCCCCcccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCC
Q 036308 95 DGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP 174 (190)
Q Consensus 95 ~g~~~~~~~~~~~~~e~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~ 174 (190)
+|+|+.||||..|+||++.++|+++++|||||.+||+|+||||||+.++||||+.|+|||+|| .|++|++.|+.+.++.
T Consensus 84 nGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI-~G~~VVr~IEn~~~d~ 162 (372)
T KOG0546|consen 84 NGTGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVI-KGKEVVREIENLETDE 162 (372)
T ss_pred CCCCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEe-echhHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCeEEeeeeeC
Q 036308 175 NNRPKLACTIAECGEM 190 (190)
Q Consensus 175 ~~~P~~~i~I~~cG~l 190 (190)
..+|..+|.|.+||+|
T Consensus 163 ~skP~~dV~I~dCGel 178 (372)
T KOG0546|consen 163 ESKPLADVVISDCGEL 178 (372)
T ss_pred CCCCccceEecccccc
Confidence 9999999999999997
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-56 Score=339.20 Aligned_cols=173 Identities=56% Similarity=0.938 Sum_probs=164.4
Q ss_pred ccCCCCCCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeecccc
Q 036308 13 WHVRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFL 92 (190)
Q Consensus 13 ~~~~~~~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~ 92 (190)
-...+..+...+|||||.+.+...|||+|+||++.+|+||+||.+||+++. ...+|.+++||||+|||+|||||++
T Consensus 30 ~~~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~----~~~gY~gS~FhRVi~nfmIQGGd~t 105 (217)
T KOG0880|consen 30 KKYEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGE----KGYGYKGSKFHRVIPNFMIQGGDFT 105 (217)
T ss_pred cccCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCC----CCcccCCceeeeeecCceeecCccc
Confidence 344567778999999999999999999999999999999999999999432 3567999999999999999999999
Q ss_pred CCCCCCccccCCccCCCCcccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcC
Q 036308 93 KGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVAT 172 (190)
Q Consensus 93 ~~~g~~~~~~~~~~~~~e~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~ 172 (190)
.+++.++.|+||++|+|||+.|+|+++|.||||+.+||+|+||||||+...+|||++|+|||+|+ +||++|.+|+..++
T Consensus 106 ~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl-~Gmdvv~~Ie~~~T 184 (217)
T KOG0880|consen 106 KGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVL-EGMDVVRKIENVKT 184 (217)
T ss_pred cCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeeh-hhHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCCeEEeeeeeC
Q 036308 173 GPNNRPKLACTIAECGEM 190 (190)
Q Consensus 173 ~~~~~P~~~i~I~~cG~l 190 (190)
|++++|.++++|.+||+|
T Consensus 185 D~~dkP~e~v~I~~~g~l 202 (217)
T KOG0880|consen 185 DERDKPLEDVVIANCGEL 202 (217)
T ss_pred CCCCCccccEEEeecCcc
Confidence 999999999999999986
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-56 Score=321.51 Aligned_cols=171 Identities=76% Similarity=1.346 Sum_probs=167.6
Q ss_pred CCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCC
Q 036308 19 NPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSG 98 (190)
Q Consensus 19 ~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~ 98 (190)
.+.+|.||||+++++.++|||.||||.+.+|+|++||.++|+|.+...+.+.+|++++|||++++|+|||||+.+++|++
T Consensus 7 ~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 7 SPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCce
Confidence 45699999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred ccccCCccCCCCcccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCC
Q 036308 99 CTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 178 (190)
Q Consensus 99 ~~~~~~~~~~~e~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P 178 (190)
..++|+.+|+||++.++|+.+|+||||++++++++.|||||+.++.+||++|+|||||+ +|+.++++|++.++.+++||
T Consensus 87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvl-dGlli~rkIEnvp~G~NnkP 165 (177)
T KOG0879|consen 87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVL-DGLLIMRKIENVPTGPNNKP 165 (177)
T ss_pred EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeee-hhhhhhhhhhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCeEEeeeeeC
Q 036308 179 KLACTIAECGEM 190 (190)
Q Consensus 179 ~~~i~I~~cG~l 190 (190)
+.+|.|+.||++
T Consensus 166 Kl~v~i~qCGem 177 (177)
T KOG0879|consen 166 KLPVVIVQCGEM 177 (177)
T ss_pred CCcEEEeecccC
Confidence 999999999986
No 4
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=3.8e-53 Score=331.08 Aligned_cols=185 Identities=91% Similarity=1.579 Sum_probs=172.9
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCce
Q 036308 6 GGGGSVEWHVRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFM 85 (190)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~ 85 (190)
.+++.++|+..+.+..+|+|||||++++++.|||+||||.+.||++|+||++||++++.+.+...+|+++.||||+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~ 81 (186)
T PLN03149 2 AGAGNVEWHLRPPNPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFM 81 (186)
T ss_pred CCccceEeeecCCCCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcE
Confidence 46788999999999999999999999999999999999999999999999999998764444456799999999999999
Q ss_pred eeeccccCCCCCCccccCCccCCCCcccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHH
Q 036308 86 IQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVR 165 (190)
Q Consensus 86 iqgGd~~~~~g~~~~~~~~~~~~~e~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~ 165 (190)
||+||+..+++.++.++|+..+++|.+.++|..+|+|+|++.++++++|||||++.++|+||++|+|||||+.+||+||+
T Consensus 82 iqgGd~~~~~g~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~ 161 (186)
T PLN03149 82 IQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVR 161 (186)
T ss_pred EEcCCcccCCCCCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHH
Confidence 99999877888888899999999998889999999999999999999999999999999999999999999845999999
Q ss_pred HHHcCcCCCCCCCCCCeEEeeeeeC
Q 036308 166 KIENVATGPNNRPKLACTIAECGEM 190 (190)
Q Consensus 166 ~I~~~~~~~~~~P~~~i~I~~cG~l 190 (190)
+|++++++++++|.++|+|.+||++
T Consensus 162 ~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 162 KIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred HHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 9999999999999999999999986
No 5
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2.4e-49 Score=309.19 Aligned_cols=174 Identities=54% Similarity=0.977 Sum_probs=157.9
Q ss_pred CCCCCCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccc-cCCCcccccCceEEEEEcCceeeeccccC
Q 036308 15 VRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYR-KGGLPVGYKGCQFHRVIKDFMIQAGDFLK 93 (190)
Q Consensus 15 ~~~~~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~-~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~ 93 (190)
..|.+..+|+||||+++++++.|+|+||||.+.||++|+||++||++... +.++...|+++.|||++|+++||+||+..
T Consensus 8 ~~~~~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~ 87 (183)
T PTZ00060 8 SFPEMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITN 87 (183)
T ss_pred CCcccCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccC
Confidence 34455578999999999999999999999999999999999999997542 12234569999999999999999999877
Q ss_pred CCCCCccccCCccCCCCcccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCC
Q 036308 94 GDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATG 173 (190)
Q Consensus 94 ~~g~~~~~~~~~~~~~e~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~ 173 (190)
+++.++.++++..+++|...++|..+|+|+|++.++++++|||||++.++|+||++|+|||||+ +|||||++|++.++
T Consensus 88 ~~g~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi-~G~dvl~~I~~~~~- 165 (183)
T PTZ00060 88 HNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVI-EGMEVVRAMEKEGT- 165 (183)
T ss_pred CCCCCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEE-ccHHHHHHHHccCC-
Confidence 7788888999999999988999999999999999999999999999999999999999999999 99999999999888
Q ss_pred CCCCCCCCeEEeeeeeC
Q 036308 174 PNNRPKLACTIAECGEM 190 (190)
Q Consensus 174 ~~~~P~~~i~I~~cG~l 190 (190)
.+++|.++|+|.+||+|
T Consensus 166 ~~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 166 QSGYPKKPVVVTDCGEL 182 (183)
T ss_pred CCCCCcCCeEEEEeEEc
Confidence 47899999999999987
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=2.2e-49 Score=304.76 Aligned_cols=164 Identities=70% Similarity=1.195 Sum_probs=151.3
Q ss_pred CeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCcccc
Q 036308 23 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSI 102 (190)
Q Consensus 23 ~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~ 102 (190)
|+||||+.++++++|+|+||||.+.||++|+||++||++..+.+.....|+++.|||++|+++||+||+..+++.++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~ 80 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI 80 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence 68999999999999999999999999999999999999643211122359999999999999999999877778888899
Q ss_pred CCccCCCCcccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCe
Q 036308 103 YGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLAC 182 (190)
Q Consensus 103 ~~~~~~~e~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i 182 (190)
++..+++|...++|+++|+|+|++.++++++|||||++.++|+||++|+|||||+ +|||||++|++++++ +++|.++|
T Consensus 81 ~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~-~G~dvl~~i~~~~~~-~~~P~~~i 158 (164)
T cd01926 81 YGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVV-EGMDVVKKIENVGSG-NGKPKKKV 158 (164)
T ss_pred cCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEE-EcHHHHHHHHcCCCC-CCCCcCCe
Confidence 9999999988999999999999999999999999999999999999999999999 999999999999998 99999999
Q ss_pred EEeeee
Q 036308 183 TIAECG 188 (190)
Q Consensus 183 ~I~~cG 188 (190)
+|.+||
T Consensus 159 ~I~~cG 164 (164)
T cd01926 159 VIADCG 164 (164)
T ss_pred EEEECC
Confidence 999998
No 7
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.8e-48 Score=313.37 Aligned_cols=168 Identities=35% Similarity=0.572 Sum_probs=152.7
Q ss_pred CCCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCcccc---CCCcccccCceEEEEEcC-ceeeeccccC
Q 036308 18 PNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRK---GGLPVGYKGCQFHRVIKD-FMIQAGDFLK 93 (190)
Q Consensus 18 ~~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~---~~~~~~Y~g~~f~ri~~~-~~iqgGd~~~ 93 (190)
+...+++|||||++++.+.|||+||||.+.||+||+||++||++.++. .+..+.|+++.||||+++ ++||+||+..
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 345689999999999999999999999999999999999999987641 223456999999999985 8999999753
Q ss_pred CCCCCccccCCccCCCCcccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCC
Q 036308 94 GDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATG 173 (190)
Q Consensus 94 ~~g~~~~~~~~~~~~~e~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~ 173 (190)
.+.+++|..|++|++.++|+++|+|+|++.++++++|||||||.++|+||++|+|||+|+ +||+||++|++++++
T Consensus 128 ----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVv-eGmdVv~kIe~v~~d 202 (249)
T PTZ00221 128 ----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAV-DDLSLLEKLESLPLD 202 (249)
T ss_pred ----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEE-eCHHHHHHHHcCCcC
Confidence 244677888999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred CCCCCCCCeEEeeeeeC
Q 036308 174 PNNRPKLACTIAECGEM 190 (190)
Q Consensus 174 ~~~~P~~~i~I~~cG~l 190 (190)
.+++|.++|+|.+||+|
T Consensus 203 ~~grP~~~V~I~~Cgvl 219 (249)
T PTZ00221 203 DVGRPLLPVTVSFCGAL 219 (249)
T ss_pred CCCCCCCCeEEEECeEe
Confidence 89999999999999986
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-47 Score=298.33 Aligned_cols=166 Identities=57% Similarity=0.971 Sum_probs=159.9
Q ss_pred CCCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCC
Q 036308 18 PNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGS 97 (190)
Q Consensus 18 ~~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~ 97 (190)
....+|+||+++.+.+...|||+++|..+..|+|++||..||++.. +.+|+|+.||||+|.|++||||+++++|+
T Consensus 132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~-----gfgykgssfhriip~fmcqggdftn~ngt 206 (298)
T KOG0111|consen 132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEA-----GFGYKGSSFHRIIPKFMCQGGDFTNGNGT 206 (298)
T ss_pred hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccC-----ccCccccchhhhhhhhhccCCccccCCCC
Confidence 3457899999999999999999999999999999999999999987 46799999999999999999999999999
Q ss_pred CccccCCccCCCCcccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCC
Q 036308 98 GCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNR 177 (190)
Q Consensus 98 ~~~~~~~~~~~~e~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~ 177 (190)
++.|+||..|.||++.|+|..+|+|||+++++|+++|||||++....|||++|+|||.|+ +||+||+++++... +.++
T Consensus 207 ggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~-eg~~vvrq~e~qgs-ksgk 284 (298)
T KOG0111|consen 207 GGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVV-EGMNVVRQVEQQGS-KSGK 284 (298)
T ss_pred CCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeec-chHHHHHHHHhccC-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 99999999999887 6899
Q ss_pred CCCCeEEeeeeeC
Q 036308 178 PKLACTIAECGEM 190 (190)
Q Consensus 178 P~~~i~I~~cG~l 190 (190)
|.+.|+|.+||+|
T Consensus 285 p~qkv~i~~cge~ 297 (298)
T KOG0111|consen 285 PQQKVKIVECGEI 297 (298)
T ss_pred cceEEEEEecccc
Confidence 9999999999986
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-47 Score=273.06 Aligned_cols=158 Identities=48% Similarity=0.839 Sum_probs=149.5
Q ss_pred CCCCCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCC
Q 036308 16 RPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGD 95 (190)
Q Consensus 16 ~~~~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~ 95 (190)
++.+-.-|.|+++++ +|.|++|||-+.||+||+||.+|++.+| |++..||||+++|+|||||+ .++
T Consensus 3 ~~~~~q~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrgY--------Yn~v~FHRii~DFmiQGGDP-TGT 68 (164)
T KOG0881|consen 3 APPEWQPPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRGY--------YNGVIFHRIIKDFMIQGGDP-TGT 68 (164)
T ss_pred CCccCCCCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhccc--------ccceeeeehhhhheeecCCC-CCC
Confidence 445556788998877 8999999999999999999999999999 99999999999999999999 788
Q ss_pred CCCccccCCccCCCCcc-cccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCC
Q 036308 96 GSGCTSIYGHKFDDENF-IAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP 174 (190)
Q Consensus 96 g~~~~~~~~~~~~~e~~-~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~ 174 (190)
|+++.|+||..|+||.. .|+|..+|.||||+.+||+|+|||||||.+.+|||++|++||||. .||+|+.++-.+.++.
T Consensus 69 GRGGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~-~Gm~vikr~G~v~Td~ 147 (164)
T KOG0881|consen 69 GRGGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVC-SGMEVIKRMGMVETDN 147 (164)
T ss_pred CCCccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhh-hhHHHHHhhcceecCC
Confidence 99999999999999977 799999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCeEEeeee
Q 036308 175 NNRPKLACTIAECG 188 (190)
Q Consensus 175 ~~~P~~~i~I~~cG 188 (190)
++||..+++|.+.-
T Consensus 148 ~DRPi~~~kIika~ 161 (164)
T KOG0881|consen 148 SDRPIDEVKIIKAY 161 (164)
T ss_pred CCCCccceeeEeee
Confidence 99999999998753
No 10
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=2e-45 Score=278.28 Aligned_cols=144 Identities=53% Similarity=0.847 Sum_probs=136.0
Q ss_pred ceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcc
Q 036308 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENF 112 (190)
Q Consensus 33 ~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~ 112 (190)
.|++|+|+||||.+.||++|+||++||++++ |+++.|||++|++++|+||+ .+++.++.++++..+++|..
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~-~~~g~g~~~~~~~~~~~e~~ 73 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARNGY--------YNNTIFHRVIKGFMIQTGDP-TGDGTGGESIWGKEFEDEFS 73 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhcCC--------cCCcEEEEEcCCcEEEeccc-CCCCCCCCcccCCccccccc
Confidence 3569999999999999999999999999998 99999999999999999997 46778888889989999976
Q ss_pred -cccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCeEEee
Q 036308 113 -IAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAE 186 (190)
Q Consensus 113 -~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 186 (190)
.++|.++|+|+|++.++++++|||||++.++|+||++|+|||||+ +|||||++|++++++++++|.++|+|.+
T Consensus 74 ~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~-~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 74 PSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV-KGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred cccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEE-cCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 788998999999999999999999999999999999999999999 9999999999999998999999999975
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=4e-45 Score=279.65 Aligned_cols=147 Identities=48% Similarity=0.819 Sum_probs=138.9
Q ss_pred eeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcc-
Q 036308 34 IPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENF- 112 (190)
Q Consensus 34 ~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~- 112 (190)
|+.|+|+||||++.||++|+||++||+.++ |+++.|||++|+++||+||+ .+++.++.++++..+++|..
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~~~iq~Gd~-~~~g~~~~~~~g~~~~~E~~~ 76 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCKKGY--------YDGTIFHRSIRNFMIQGGDP-TGTGRGGESIWGKPFKDEFKP 76 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhcCc--------cCCcEEEEEeCCcEEEeccc-CCCCCCCccccCCccCccccc
Confidence 569999999999999999999999999998 99999999999999999998 46678888899999999865
Q ss_pred cccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCeEEeeeeeC
Q 036308 113 IAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 190 (190)
Q Consensus 113 ~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i~I~~cG~l 190 (190)
.++|+++|+|+|+++++++++|||||++.++|+||++|+|||||+ +||++|++|++++++++++|+++|+|.+|++|
T Consensus 77 ~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~-~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~ 153 (159)
T cd01923 77 NLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVV-GGLETLEAMENVPDPGTDRPKEEIKIEDTSVF 153 (159)
T ss_pred CcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEE-cCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence 678999999999999999999999999999999999999999999 99999999999999999999999999999875
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=5.3e-45 Score=277.27 Aligned_cols=145 Identities=48% Similarity=0.807 Sum_probs=137.0
Q ss_pred eeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcc-
Q 036308 34 IPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENF- 112 (190)
Q Consensus 34 ~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~- 112 (190)
|+.|+|+||||++.||++|+||++||++++ |+++.|||++|++++|+||+ .+++.++.++++..+++|..
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~f~iq~Gd~-~~~g~g~~~~~~~~~~~e~~~ 77 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCASGY--------YNGCIFHRNIKGFMVQTGDP-TGTGKGGESIWGKKFEDEFRE 77 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHhcCc--------cCCcEEEEeCCCCEEEcccc-CCCCCCCCccCCCcccccccc
Confidence 569999999999999999999999999998 99999999999999999998 45677888889999999976
Q ss_pred cccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCeEEeeee
Q 036308 113 IAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECG 188 (190)
Q Consensus 113 ~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i~I~~cG 188 (190)
.++|+.+|+|+|++.++++++|||||++.++|+||++|+|||||+ +|||||++|++++++++++|.++|+|.+|-
T Consensus 78 ~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~-~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 78 TLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVI-DGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred CCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEE-eCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 578889999999999999999999999999999999999999999 999999999999999999999999999984
No 13
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-45 Score=274.73 Aligned_cols=145 Identities=46% Similarity=0.696 Sum_probs=132.0
Q ss_pred ceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcc
Q 036308 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENF 112 (190)
Q Consensus 33 ~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~ 112 (190)
+|+.|+|+||||++.||+||+||++||+.++ |+|+.||||+|+|+|||||+..+.+.++++ ++|++|+.
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~--------Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~ 73 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLVKEGF--------YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENF 73 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHHHcCC--------CCCceEEEeecCceeecCCCCCCCCCCCCC---CCCccccc
Confidence 5779999999999999999999999999988 999999999999999999998776887776 78999998
Q ss_pred cccCCC--CcEEEEeecC-CCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCC----CCCCCCeEEe
Q 036308 113 IAKHTG--PGLLSMANSG-PNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPN----NRPKLACTIA 185 (190)
Q Consensus 113 ~~~h~~--~G~vs~~~~~-~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~----~~P~~~i~I~ 185 (190)
...|.+ +|+|||||.+ |++++|||||++.+.|+||++|+|||+|+ +|||+|++|++.++... ..|..+++|.
T Consensus 74 ~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv-~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~ 152 (158)
T COG0652 74 ALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVV-EGMDVVDKIKNGDTDDSGYVQDVPADPVKIL 152 (158)
T ss_pred ccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEe-hhHHHHHHHHcCCccCCCcccCCCCCCeEEe
Confidence 888777 9999999999 99999999999999999999999999999 99999999999888743 4566788887
Q ss_pred eeee
Q 036308 186 ECGE 189 (190)
Q Consensus 186 ~cG~ 189 (190)
+..+
T Consensus 153 ~~~~ 156 (158)
T COG0652 153 SVKI 156 (158)
T ss_pred eeee
Confidence 7554
No 14
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.7e-44 Score=277.96 Aligned_cols=148 Identities=39% Similarity=0.668 Sum_probs=134.4
Q ss_pred ceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCC-------c
Q 036308 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYG-------H 105 (190)
Q Consensus 33 ~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~-------~ 105 (190)
.|+.|+|+||||.+.||++|+||++||++++ |+++.|||++|+++||+||+. +++.++.++++ .
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~--------Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~ 73 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKLKY--------YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQAR 73 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhcCC--------cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCc
Confidence 3679999999999999999999999999998 999999999999999999984 55666666654 3
Q ss_pred cCCCCcc-cccCCCCcEEEEeecCCCCCcceEEEecCC-CCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCeE
Q 036308 106 KFDDENF-IAKHTGPGLLSMANSGPNSNGCQFFITCAK-CDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACT 183 (190)
Q Consensus 106 ~~~~e~~-~~~h~~~G~vs~~~~~~~~~~sqFfItl~~-~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i~ 183 (190)
.+++|.. .++|+.+|+|+|++.++++++|||||++.+ .|+||++|+|||||+ +|||||++|++++++++++|.++|+
T Consensus 74 ~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi-~G~dvv~~I~~~~~~~~~~P~~~i~ 152 (166)
T cd01921 74 FFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVV-EGFDVLEKINDAIVDDDGRPLKDIR 152 (166)
T ss_pred ccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEE-cCHHHHHHHHcCCCCCCCCCCCCeE
Confidence 4666654 678989999999999999999999999975 899999999999999 9999999999999999999999999
Q ss_pred EeeeeeC
Q 036308 184 IAECGEM 190 (190)
Q Consensus 184 I~~cG~l 190 (190)
|.+|++|
T Consensus 153 I~~~~i~ 159 (166)
T cd01921 153 IKHTHIL 159 (166)
T ss_pred EEEEEEE
Confidence 9999986
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2.2e-44 Score=271.88 Aligned_cols=143 Identities=51% Similarity=0.855 Sum_probs=133.7
Q ss_pred ceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCc-
Q 036308 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDEN- 111 (190)
Q Consensus 33 ~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~- 111 (190)
.|+.|+|+||||.+.||++|+||++||+.++ |+++.|||++|++++|+||+ .+++.++.++++..+++|.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~-~~~g~~~~~~~~~~~~~e~~ 73 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAKRGY--------YNGTIFHRLIKDFMIQGGDP-TGTGRGGASIYGKKFEDEIH 73 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEcCCcEEEeccc-CCCCCCcccccCCCcccccc
Confidence 3679999999999999999999999999998 99999999999999999997 4567778888999999985
Q ss_pred ccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCeEEee
Q 036308 112 FIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAE 186 (190)
Q Consensus 112 ~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 186 (190)
..++|.++|+|+|++.++++++|||||++.++|+||++|+|||||+ +|||||++|++++++ +++|.++|+|.+
T Consensus 74 ~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~-~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 74 PELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVS-KGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred cCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEE-cCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 4788999999999999999999999999999999999999999999 999999999999998 899999999963
No 16
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.6e-43 Score=272.53 Aligned_cols=157 Identities=42% Similarity=0.709 Sum_probs=143.7
Q ss_pred CCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCc
Q 036308 20 PKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGC 99 (190)
Q Consensus 20 ~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~ 99 (190)
+...+|.++++ +|+|+||||.+.||++|+||++||+.++ |+++.|||++|+++||+||+ .+++.++
T Consensus 3 ~~~~~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~~--------Y~~~~f~Rvi~~f~iQgGd~-~~~g~g~ 68 (171)
T cd01925 3 PTTGKVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEGY--------YDNTIFHRVVPGFIIQGGDP-TGTGTGG 68 (171)
T ss_pred CcccEEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcCC--------CCCCEEEEEcCCcEEEcccc-CCCCccC
Confidence 34456776655 9999999999999999999999999998 99999999999999999997 4668888
Q ss_pred cccCCccCCCCcc-cccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCC
Q 036308 100 TSIYGHKFDDENF-IAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 178 (190)
Q Consensus 100 ~~~~~~~~~~e~~-~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P 178 (190)
.++++..+++|.. .++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++++++++++|++++++++++|
T Consensus 69 ~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P 148 (171)
T cd01925 69 ESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERP 148 (171)
T ss_pred cccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCc
Confidence 8999999999876 578889999999999999999999999999999999999999999567899999999999999999
Q ss_pred CCCeEEeeeeeC
Q 036308 179 KLACTIAECGEM 190 (190)
Q Consensus 179 ~~~i~I~~cG~l 190 (190)
.++|+|.+|+++
T Consensus 149 ~~~i~I~~~~i~ 160 (171)
T cd01925 149 VYPPKITSVEVL 160 (171)
T ss_pred CCCeEEEEEEEE
Confidence 999999999874
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=7.8e-42 Score=267.96 Aligned_cols=156 Identities=31% Similarity=0.491 Sum_probs=134.9
Q ss_pred CCCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCC
Q 036308 18 PNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGS 97 (190)
Q Consensus 18 ~~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~ 97 (190)
..+.+++|.++++ .|+|+||||.+.||++|+||++||+.++ |+++.|||++|+|+||||++....+
T Consensus 24 ~~~~~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRvi~~f~iQgG~~~~~~~- 89 (190)
T PRK10903 24 AAKGDPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTEQMQ- 89 (190)
T ss_pred ccCCCcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEeCCceEEeCCcCCCCC-
Confidence 4456777877655 8999999999999999999999999998 9999999999999999998754322
Q ss_pred CccccCCccCCCCcccccCCCCcEEEEeecC-CCCCcceEEEecCCCCCCCC-----CceEEEEEEcchHHHHHHHHcCc
Q 036308 98 GCTSIYGHKFDDENFIAKHTGPGLLSMANSG-PNSNGCQFFITCAKCDWLDN-----KHVVFGRVLGDGLLVVRKIENVA 171 (190)
Q Consensus 98 ~~~~~~~~~~~~e~~~~~h~~~G~vs~~~~~-~~~~~sqFfItl~~~~~ld~-----~~~vfG~Vi~~G~~vl~~I~~~~ 171 (190)
...++.++.+|.....|+.+|+|+|++.+ +++++|||||++.+.++||+ +|+|||+|+ +|||||++|++++
T Consensus 90 --~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~-eG~dvl~~I~~~~ 166 (190)
T PRK10903 90 --QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVV-KGMDVADKISQVP 166 (190)
T ss_pred --CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEe-cCHHHHHHHHcCC
Confidence 12235567888665556779999999876 89999999999999999984 899999999 9999999999999
Q ss_pred CCC----CCCCCCCeEEeeeeeC
Q 036308 172 TGP----NNRPKLACTIAECGEM 190 (190)
Q Consensus 172 ~~~----~~~P~~~i~I~~cG~l 190 (190)
+++ +++|.++|+|.+|+++
T Consensus 167 ~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 167 THDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCCCCcccCCeEEEEEEEe
Confidence 976 5799999999999875
No 18
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-42 Score=285.07 Aligned_cols=154 Identities=45% Similarity=0.778 Sum_probs=145.1
Q ss_pred CeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCcccc
Q 036308 23 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSI 102 (190)
Q Consensus 23 ~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~ 102 (190)
.+-|..+. |+.|.|.|||++|.+|++|+||++||..+| |+++.|||.+.+|+|||||+ .+.|.|+.|+
T Consensus 276 kkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~gY--------Ynnt~FHRsIrnFmiQGGDP-TGTG~GGeSi 343 (518)
T KOG0883|consen 276 KKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKNGY--------YNNTIFHRSIRNFMIQGGDP-TGTGRGGESI 343 (518)
T ss_pred ccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhccc--------ccchHHHHHHHHHeeeCCCC-CCCCCCCccc
Confidence 44455554 669999999999999999999999999999 99999999999999999999 7889999999
Q ss_pred CCccCCCCcc-cccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCC
Q 036308 103 YGHKFDDENF-IAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLA 181 (190)
Q Consensus 103 ~~~~~~~e~~-~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~ 181 (190)
+|.+|.||.. .+.|+.||+||||+++|++|+|||||+..++.+||++|++||||+ .|+++|.+|+++++++.++|..+
T Consensus 344 WgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvV-GGldtL~amEnve~d~~DrP~e~ 422 (518)
T KOG0883|consen 344 WGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVV-GGLDTLTAMENVETDEKDRPKEE 422 (518)
T ss_pred cCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeee-ccHHHHHHHhcCCCCCCCCcccc
Confidence 9999999976 799999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred eEEeeeee
Q 036308 182 CTIAECGE 189 (190)
Q Consensus 182 i~I~~cG~ 189 (190)
|+|.+.-+
T Consensus 423 I~i~~~~V 430 (518)
T KOG0883|consen 423 IKIEDAIV 430 (518)
T ss_pred eEEeeeEE
Confidence 99988644
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.8e-40 Score=254.89 Aligned_cols=145 Identities=35% Similarity=0.561 Sum_probs=124.5
Q ss_pred ceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcc
Q 036308 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENF 112 (190)
Q Consensus 33 ~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~ 112 (190)
.|+.|+|+|+||.+.||++|+||++||+.++ |+++.|||++|+|+||||++..+.+. ..++..+++|..
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~ 73 (164)
T PRK10791 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEAN 73 (164)
T ss_pred EEccccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCccc
Confidence 3569999999999999999999999999999 99999999999999999997544322 123456777754
Q ss_pred cccCCCCcEEEEeecC-CCCCcceEEEecCCCCCCC-------C-CceEEEEEEcchHHHHHHHHcCcCCC----CCCCC
Q 036308 113 IAKHTGPGLLSMANSG-PNSNGCQFFITCAKCDWLD-------N-KHVVFGRVLGDGLLVVRKIENVATGP----NNRPK 179 (190)
Q Consensus 113 ~~~h~~~G~vs~~~~~-~~~~~sqFfItl~~~~~ld-------~-~~~vfG~Vi~~G~~vl~~I~~~~~~~----~~~P~ 179 (190)
...|+.+|+|||++.+ +++++|||||++.+.++|| + +|+|||||+ +|||||++|+++++++ +++|.
T Consensus 74 ~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~-eG~dvl~~I~~~~~~~~~~~~~~P~ 152 (164)
T PRK10791 74 NGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVV-EGMDVVDKIKGVATGRSGMHQDVPK 152 (164)
T ss_pred ccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEe-cCHHHHHHHHcCcCCCCCccCCCcC
Confidence 4334469999999886 8999999999999988876 2 799999999 9999999999999976 37999
Q ss_pred CCeEEeeeee
Q 036308 180 LACTIAECGE 189 (190)
Q Consensus 180 ~~i~I~~cG~ 189 (190)
.+|+|.+|.+
T Consensus 153 ~~v~I~~~~i 162 (164)
T PRK10791 153 EDVIIESVTV 162 (164)
T ss_pred CCeEEEEEEE
Confidence 9999999975
No 20
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=287.54 Aligned_cols=151 Identities=46% Similarity=0.759 Sum_probs=143.7
Q ss_pred EEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccC
Q 036308 28 DVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKF 107 (190)
Q Consensus 28 di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~ 107 (190)
+-.+-+|+.|+|.|.||+++||+||+||...|+.+| |++..||||+++|+||+||+ .++|+|+.|++|+.|
T Consensus 405 ~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngy--------y~~~~fhriik~fmiqtgdp-~g~gtggesiwg~df 475 (558)
T KOG0882|consen 405 KAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGY--------YDNHTFHRIIKGFMIQTGDP-LGDGTGGESIWGKDF 475 (558)
T ss_pred cceEEEecccceEEEecccccchhhhhhhccccCcc--------ccCcchHHhhhhheeecCCC-CCCCCCCcccccccc
Confidence 334447889999999999999999999999999999 99999999999999999999 688999999999999
Q ss_pred CCCcc-cccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCeEEee
Q 036308 108 DDENF-IAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAE 186 (190)
Q Consensus 108 ~~e~~-~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 186 (190)
+||.. .|+|+++-+|||||.++|+||||||||+.+.||||++|++||||+ .||+|+++|+++.+++++||+++|.|.+
T Consensus 476 edefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~-~gm~vvqri~~v~t~k~drp~e~v~iin 554 (558)
T KOG0882|consen 476 EDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVT-AGMDVVQRIEQVKTDKYDRPYEDVKIIN 554 (558)
T ss_pred hhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEe-cchhHHhHhhhcccCcCCCCCCceeEEE
Confidence 99988 799999999999999999999999999999999999999999999 9999999999999999999999999987
Q ss_pred ee
Q 036308 187 CG 188 (190)
Q Consensus 187 cG 188 (190)
--
T Consensus 555 is 556 (558)
T KOG0882|consen 555 IS 556 (558)
T ss_pred Ee
Confidence 53
No 21
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.1e-40 Score=251.65 Aligned_cols=141 Identities=33% Similarity=0.457 Sum_probs=123.9
Q ss_pred eeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCccc
Q 036308 34 IPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFI 113 (190)
Q Consensus 34 ~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~~ 113 (190)
|+.|+|+||||.+.||++|+||++||+.++ |+++.|||++|+++||+|++....+. ..++..+.+|...
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~ 72 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKGF--------YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGN 72 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcCC--------CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccc
Confidence 569999999999999999999999999998 99999999999999999997544322 2234567777665
Q ss_pred ccCCCCcEEEEeecC-CCCCcceEEEecCCCCCCCC-----CceEEEEEEcchHHHHHHHHcCcCCCC----CCCCCCeE
Q 036308 114 AKHTGPGLLSMANSG-PNSNGCQFFITCAKCDWLDN-----KHVVFGRVLGDGLLVVRKIENVATGPN----NRPKLACT 183 (190)
Q Consensus 114 ~~h~~~G~vs~~~~~-~~~~~sqFfItl~~~~~ld~-----~~~vfG~Vi~~G~~vl~~I~~~~~~~~----~~P~~~i~ 183 (190)
..|+.+|+|+||+.+ +++++|||||++.+.++||. +|+|||+|+ +||+||++|++++++++ ++|..+|+
T Consensus 73 ~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~-eG~dvl~~I~~~~~~~~~~~~~~p~~~v~ 151 (155)
T cd01920 73 GLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVT-EGMDVVDKIAGVETYSFGSYQDVPVQDVI 151 (155)
T ss_pred cccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEe-cCHHHHHHHHcCCccCCCCcCCCcCCCeE
Confidence 556779999999976 89999999999999999995 799999999 99999999999999764 69999999
Q ss_pred Eee
Q 036308 184 IAE 186 (190)
Q Consensus 184 I~~ 186 (190)
|.+
T Consensus 152 i~~ 154 (155)
T cd01920 152 IES 154 (155)
T ss_pred EEE
Confidence 976
No 22
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.1e-39 Score=248.31 Aligned_cols=150 Identities=50% Similarity=0.797 Sum_probs=130.9
Q ss_pred EEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCc-cccCC
Q 036308 26 FFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGC-TSIYG 104 (190)
Q Consensus 26 ~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~-~~~~~ 104 (190)
||+|+.++ +|+|+||||++.||++|+||++||+.++ |+++.|||++|+++||+|++......+. ....+
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~ 70 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSGF--------YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGG 70 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTTS--------STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcccc--------cCCceeecccccceeeeeeccCCCCcccccccCc
Confidence 67888644 9999999999999999999999999888 9999999999999999999765433111 12234
Q ss_pred ccCCCCcc--cccCCCCcEEEEeecC--CCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCC
Q 036308 105 HKFDDENF--IAKHTGPGLLSMANSG--PNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKL 180 (190)
Q Consensus 105 ~~~~~e~~--~~~h~~~G~vs~~~~~--~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~ 180 (190)
..+++|.. .+.| .+|+|+|++.+ +++++|||||+|.+.++||++|+|||+|+ +||+||++|+++++++ +|.+
T Consensus 71 ~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~-~G~~vl~~i~~~~~~~--~p~~ 146 (155)
T PF00160_consen 71 EPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVI-EGMDVLDKIEAGPTDE--RPKQ 146 (155)
T ss_dssp SCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEE-EHHHHHHHHHTSBBTT--EBSS
T ss_pred cccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEe-hhHHHHHHHHCCCCCC--ccCC
Confidence 46888884 4556 79999999976 88899999999999999999999999999 9999999999999876 9999
Q ss_pred CeEEeeeee
Q 036308 181 ACTIAECGE 189 (190)
Q Consensus 181 ~i~I~~cG~ 189 (190)
+|+|.+||+
T Consensus 147 ~v~I~~cgv 155 (155)
T PF00160_consen 147 DVTISSCGV 155 (155)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEeEC
Confidence 999999996
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1e-39 Score=246.31 Aligned_cols=142 Identities=54% Similarity=0.807 Sum_probs=129.7
Q ss_pred eeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCccc
Q 036308 34 IPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFI 113 (190)
Q Consensus 34 ~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~~ 113 (190)
|+.|+|+||||++.||++|+||++||++++ |+++.|||++|+++||+||+......+ +.++..+++|...
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~--------Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~ 73 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGGF--------YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFP 73 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcCC--------cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcccc
Confidence 558999999999999999999999999998 999999999999999999986543322 4556788899887
Q ss_pred cc-CCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCeEEee
Q 036308 114 AK-HTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAE 186 (190)
Q Consensus 114 ~~-h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 186 (190)
.. |+++|+|+|++.++++++|||||++.+.++||++|+|||||+ +||++|++|++.+++++++|.++|+|++
T Consensus 74 ~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 74 LKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVV-EGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEe-CCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 65 888999999999999999999999999999999999999999 9999999999999999999999999974
No 24
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=237.14 Aligned_cols=145 Identities=46% Similarity=0.794 Sum_probs=137.0
Q ss_pred ceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcc
Q 036308 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENF 112 (190)
Q Consensus 33 ~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~ 112 (190)
++..|+|.||||.+.+|++|+||+.||...+ |+++.|||-+|+|++|.||+ ...|+++.|++|.+|+||..
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~~~~~--------~n~~~~~~~~~~f~v~~~~~-~~tgrgg~siwg~~fede~~ 76 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALCASDY--------YNGCIFHRNIKGFMVQTGDP-THTGRGGNSIWGKKFEDEYS 76 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHhhhhh--------ccceeecCCCCCcEEEeCCC-CCCCCCCccccCCcchHHHH
Confidence 5668999999999999999999999999998 99999999999999999998 56799999999999999987
Q ss_pred -cccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCC-CCCCCCeEEeee
Q 036308 113 -IAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPN-NRPKLACTIAEC 187 (190)
Q Consensus 113 -~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~-~~P~~~i~I~~c 187 (190)
.++|+.||.||||+.+|++++||||||...+|+||-+|++||+|| +|+|+|++|+.+++++. .||..++.|.+-
T Consensus 77 ~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvi-dg~etldele~l~v~~ktyrpl~~~~ik~i 152 (161)
T KOG0884|consen 77 EYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI-DGLETLDELEKLPVNEKTYRPLNDVHIKDI 152 (161)
T ss_pred HHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeec-cchhhHHHHhhcccCccccccchheeeeee
Confidence 699999999999999999999999999999999999999999999 99999999999999854 899988888764
No 25
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-40 Score=250.68 Aligned_cols=163 Identities=60% Similarity=1.033 Sum_probs=154.2
Q ss_pred CCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEE---EEcCceeeeccccCCCCC
Q 036308 21 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHR---VIKDFMIQAGDFLKGDGS 97 (190)
Q Consensus 21 ~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~r---i~~~~~iqgGd~~~~~g~ 97 (190)
.+|.||||++++++++|+++++||.+..|+|++||..||++.+ +..|+++.||| .++++++||||++..+++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgek-----g~~yk~s~fhr~~~~~~~fm~qggDft~hngt 76 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEK-----GFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGT 76 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCC-----ccccccchhhhccccccceeeccCcccccCCc
Confidence 4799999999999999999999999999999999999999765 46699999999 344799999999999999
Q ss_pred CccccCCccCCCCcccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCC
Q 036308 98 GCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNR 177 (190)
Q Consensus 98 ~~~~~~~~~~~~e~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~ 177 (190)
++.++|++.|+||++.++|..+|+|||++.+|++++|||||++....|||++|+|||+|. +||+++++++.... ++++
T Consensus 77 ggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~-eGm~iv~a~e~~gs-~~gk 154 (167)
T KOG0865|consen 77 GGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVK-EGMDIVEAMERFGS-RNGK 154 (167)
T ss_pred cceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceE-cccchhhhhhccCC-cCCc
Confidence 999999999999999999999999999999999999999999999999999999999999 99999999999665 7999
Q ss_pred CCCCeEEeeeeeC
Q 036308 178 PKLACTIAECGEM 190 (190)
Q Consensus 178 P~~~i~I~~cG~l 190 (190)
+.++|+|.+||+|
T Consensus 155 ~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 155 TSKKITIADCGQL 167 (167)
T ss_pred ccccEEEecCCcC
Confidence 9999999999987
No 26
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-38 Score=261.97 Aligned_cols=158 Identities=37% Similarity=0.667 Sum_probs=148.4
Q ss_pred CCCCCeEEEEEEeCceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCC
Q 036308 19 NPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSG 98 (190)
Q Consensus 19 ~~~~~~v~~di~v~~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~ 98 (190)
.+...+|.+.++ .|+|.||||+..||++|+||++||..+| |+++.|||++|+|++||||+ +++|+|
T Consensus 9 P~ttgkvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGegy--------y~nt~fhrlvp~f~~Qggdp-~~~gtG 74 (439)
T KOG0885|consen 9 PPTTGKVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEGY--------YDNTEFHRLVPGFLVQGGDP-TGTGTG 74 (439)
T ss_pred CCccceEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhcc--------ccCceeeeeccchhcccCCC-CCCCCC
Confidence 345566776655 8999999999999999999999999999 99999999999999999999 788999
Q ss_pred ccccCCccCCCCcc-cccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCC
Q 036308 99 CTSIYGHKFDDENF-IAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNR 177 (190)
Q Consensus 99 ~~~~~~~~~~~e~~-~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~ 177 (190)
+.+|||.+|.+|.+ ++++.++|+|+||+.+.+.|+||||+||+++|+|++++++||+|+++.+..+.+|..+.++.+.|
T Consensus 75 gesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~R 154 (439)
T KOG0885|consen 75 GESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDR 154 (439)
T ss_pred ccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccC
Confidence 99999999999988 78999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CCCCeEEeeeeeC
Q 036308 178 PKLACTIAECGEM 190 (190)
Q Consensus 178 P~~~i~I~~cG~l 190 (190)
|..+-.|.+|.+|
T Consensus 155 p~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 155 PVDPPKIKSVEVL 167 (439)
T ss_pred CCCccceeeeEee
Confidence 9999999999875
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1.6e-36 Score=235.40 Aligned_cols=129 Identities=33% Similarity=0.527 Sum_probs=109.7
Q ss_pred ceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCC-C---------------
Q 036308 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGD-G--------------- 96 (190)
Q Consensus 33 ~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~-g--------------- 96 (190)
.|+.|+|+||||++.||++|+||++||+.++ |+++.|||++|+|+||+||+...+ +
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e 74 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGF--------YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLE 74 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCC--------cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccce
Confidence 4779999999999999999999999999998 999999999999999999985431 1
Q ss_pred ----CCccccCCccC-----CCCcccccCCCCcEEEEeecC--CCCCcceEEEecC-------CCCCCCCCceEEEEEEc
Q 036308 97 ----SGCTSIYGHKF-----DDENFIAKHTGPGLLSMANSG--PNSNGCQFFITCA-------KCDWLDNKHVVFGRVLG 158 (190)
Q Consensus 97 ----~~~~~~~~~~~-----~~e~~~~~h~~~G~vs~~~~~--~~~~~sqFfItl~-------~~~~ld~~~~vfG~Vi~ 158 (190)
..+.++++..+ .++...+.|+.+|+|+|++.+ +++++|||||++. +.|+||++|+|||+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vv- 153 (176)
T cd01924 75 IKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVT- 153 (176)
T ss_pred ecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEe-
Confidence 11223444433 245556778889999999987 6999999999998 7899999999999999
Q ss_pred chHHHHHHHHcC
Q 036308 159 DGLLVVRKIENV 170 (190)
Q Consensus 159 ~G~~vl~~I~~~ 170 (190)
+|||||++|+..
T Consensus 154 eG~dvl~~I~~g 165 (176)
T cd01924 154 DGLDILRELKVG 165 (176)
T ss_pred cCHHHHHhhcCC
Confidence 999999999754
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-35 Score=240.53 Aligned_cols=148 Identities=40% Similarity=0.670 Sum_probs=136.8
Q ss_pred ceeceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCc-------
Q 036308 33 TIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGH------- 105 (190)
Q Consensus 33 ~~~~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~------- 105 (190)
.|++|+|+|+||-+.+|.+|.||++||+-+| |+.|.||.|..+|.+|.||+ .++|.|+.++|+-
T Consensus 6 eTtlGDlvIDLf~~erP~~clNFLKLCk~KY--------YN~clfh~vq~~f~aQTGDP-tGtG~GG~si~~~lyG~q~r 76 (479)
T KOG0415|consen 6 ETTLGDLVIDLFVKERPRTCLNFLKLCKIKY--------YNFCLFHTVQRDFTAQTGDP-TGTGDGGESIYGVLYGEQAR 76 (479)
T ss_pred EeecccEEeeeecccCcHHHHHHHHHHhHhh--------cccceeeeccccceeecCCC-CCCCCCcceeeeecccccch
Confidence 3559999999999999999999999999999 99999999999999999999 5689999999873
Q ss_pred cCCCCcc-cccCCCCcEEEEeecCCCCCcceEEEecCC-CCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCeE
Q 036308 106 KFDDENF-IAKHTGPGLLSMANSGPNSNGCQFFITCAK-CDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACT 183 (190)
Q Consensus 106 ~~~~e~~-~~~h~~~G~vs~~~~~~~~~~sqFfItl~~-~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i~ 183 (190)
.|+.|.. .++|.+.|+|||++.+.+.++|||||||++ ...||++|+|||+|. +|||+|.+|+..-++++++|+++|+
T Consensus 77 ffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~-EG~dtl~kiNea~vD~~~rPykdIR 155 (479)
T KOG0415|consen 77 FFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVA-EGFDTLTKINEAIVDPKNRPYKDIR 155 (479)
T ss_pred hhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehh-hhHHHHHHHHHHhcCCCCCccccee
Confidence 3566665 799999999999999999999999999986 569999999999999 9999999999999999999999999
Q ss_pred EeeeeeC
Q 036308 184 IAECGEM 190 (190)
Q Consensus 184 I~~cG~l 190 (190)
|.+.-+|
T Consensus 156 I~HTiiL 162 (479)
T KOG0415|consen 156 IKHTIIL 162 (479)
T ss_pred eeeeEEe
Confidence 9987665
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=6.5e-05 Score=65.27 Aligned_cols=140 Identities=24% Similarity=0.274 Sum_probs=111.1
Q ss_pred eEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccc--cCCc---cCCC--C
Q 036308 38 RIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTS--IYGH---KFDD--E 110 (190)
Q Consensus 38 ~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~--~~~~---~~~~--e 110 (190)
-|.|+++.+-.|.-++-|...|.-.+ +++..|.++...+++|.||.......++.- |.++ .+++ +
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q~~~--------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l 184 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQDGY--------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNL 184 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCccce--------ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccc
Confidence 89999999999999999999999887 999999999999999999854332222211 1111 1222 3
Q ss_pred cccccCCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcCcCCCCCCCCCCeEEeee
Q 036308 111 NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAEC 187 (190)
Q Consensus 111 ~~~~~h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~P~~~i~I~~c 187 (190)
++.++|. .-++.+.+.-....+-+|++.-...+.+..+..|+|++. .+-++++.|.+..++....|+.++.|.+.
T Consensus 185 ~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~-KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 185 NFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF-KTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred ccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEe-ccchhhhhhhccchhhhhcccccccccee
Confidence 4567776 556666665555667889999999999999999999999 99999999999999999999999888765
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=97.06 E-value=0.0033 Score=55.58 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=68.4
Q ss_pred eeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcccccC
Q 036308 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKH 116 (190)
Q Consensus 37 G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~~~~h 116 (190)
=.+.+||.++ ||.++++|+.+.+.+. -...+.-.+|- +.++..+...+.|+...+
T Consensus 201 Ty~evE~~~~-~p~s~EH~la~~~~G~----~~Vd~~tsTfi-------------------~d~~L~g~~~p~En~~~R- 255 (503)
T TIGR03268 201 TYVEVELDPN-APVSVEHFLALMEDGT----FRVDYRTSTFI-------------------SDDSLRGLDKPEENIEKR- 255 (503)
T ss_pred EEEEEEEcCC-CChhHHHHHHHHhCCe----EEEeeeecceE-------------------ecccccCccCCccccCcc-
Confidence 3677888776 8999999999998775 00111111111 112222344566665333
Q ss_pred CCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcC
Q 036308 117 TGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENV 170 (190)
Q Consensus 117 ~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~ 170 (190)
.+|+|.+.+.+.+ ....||--.+.+ ..-.|+|+|+|+ .||++++--+..
T Consensus 256 -~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~-~GiELid~a~~G 304 (503)
T TIGR03268 256 -RRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVT-RGIELIDIAQEG 304 (503)
T ss_pred -cceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEe-cceeeeecccCC
Confidence 4999999988744 456888877765 334699999999 999998765543
No 31
>PRK00969 hypothetical protein; Provisional
Probab=97.01 E-value=0.0034 Score=55.58 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcccccC
Q 036308 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKH 116 (190)
Q Consensus 37 G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~~~~h 116 (190)
=.+.+||.++ ||.++++|+.+.+.+. -...|.-++|- +.++..+...+.|+...+
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~~G~----f~Vd~~tstfI-------------------~d~~L~g~~~p~En~~~R- 258 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLEDGT----FEVDFETSTFI-------------------ADDRLQGLKIPEENFEPR- 258 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHhCCe----EEEeeeecceE-------------------eeccccCccCCccccCcc-
Confidence 3677888776 8999999999998875 01112222221 111222344566665433
Q ss_pred CCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcC
Q 036308 117 TGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENV 170 (190)
Q Consensus 117 ~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~ 170 (190)
.+|+|.+.+.+.+ ....||--.+.+ ..-.|+|+|+|+ .||++++--...
T Consensus 259 -~~GtVTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~-~GiELi~~a~~G 307 (508)
T PRK00969 259 -RRGTVTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVT-HGIELIDFAKEG 307 (508)
T ss_pred -ccceEEEEeeccC--ceeEEEECCCCC-CCccceeEEEEe-cceeeeecccCC
Confidence 4999999988644 456888877765 334699999999 999998765443
No 32
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0034 Score=53.99 Aligned_cols=105 Identities=24% Similarity=0.346 Sum_probs=68.7
Q ss_pred ceeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCccccc
Q 036308 36 AGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAK 115 (190)
Q Consensus 36 ~G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~~~~ 115 (190)
.-.+.+||.+. +|+++++|+.|...+. ....|.-.+| + +.++....+.+.|++.++
T Consensus 202 fTy~eve~s~n-sP~saEH~lalmedG~----lri~~~tntf--------i-----------s~~~lq~~~~~~en~d~R 257 (512)
T COG4070 202 FTYFEVELSRN-SPKSAEHFLALMEDGT----LRIDVTTNTF--------I-----------SDDTLQEEKVPEENFDLR 257 (512)
T ss_pred EEEEEEEeCCC-CchhHHHHHHHhhcce----EEEEEeccce--------e-----------eccccccccCChhhhhhh
Confidence 34678888776 8999999999988764 0111222222 1 122223355677777665
Q ss_pred CCCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHcC
Q 036308 116 HTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENV 170 (190)
Q Consensus 116 h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~~ 170 (190)
.+|.|+..+.+.+ ...-||--.+-+. --.|.++|||+ +||+++|--.+.
T Consensus 258 --erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~-eGiELid~a~eG 306 (512)
T COG4070 258 --ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVI-EGIELIDLAEEG 306 (512)
T ss_pred --hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeee-cceEEEEecccC
Confidence 4899999987643 3467776665442 24688999999 999998755443
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.73 E-value=0.015 Score=51.53 Aligned_cols=116 Identities=18% Similarity=0.283 Sum_probs=68.6
Q ss_pred eeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcccccC
Q 036308 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKH 116 (190)
Q Consensus 37 G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~~~~h 116 (190)
--|.|+||.+.||.++.-|.++.--... .---..+|=..++..+-=|+. .+...+.+||.+-..
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~------~VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~~~ 438 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFTGLKTK------PVGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPEDK 438 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhcCCccc------ccceeEEEEEeCCeeEeccCc----------hhccccCCCCCCCCc
Confidence 4589999999999999999987543321 011335555566654442322 122446677776666
Q ss_pred CCCcEEEEeecCC---CCCcceEEE--ecCCC-CCCCCCceEEEEEEcchHHHHHHHHcC
Q 036308 117 TGPGLLSMANSGP---NSNGCQFFI--TCAKC-DWLDNKHVVFGRVLGDGLLVVRKIENV 170 (190)
Q Consensus 117 ~~~G~vs~~~~~~---~~~~sqFfI--tl~~~-~~ld~~~~vfG~Vi~~G~~vl~~I~~~ 170 (190)
..+|.|++-|... ...|-+|-= -++|. ..+++. -++|+|+ ++++-|+++...
T Consensus 439 V~ag~IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~gT-NIiG~Vv-~~~e~Lk~~KeG 496 (503)
T TIGR03268 439 VEAGVIGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSGT-NIIGRVV-EGMERLKGLKEG 496 (503)
T ss_pred cccceEeeechhhhcCceEEEEccCCcccCCCCCCccCc-ceEEEec-CChhHhcccccC
Confidence 7788888776542 111111100 00222 134443 3669999 999999888664
No 34
>PRK00969 hypothetical protein; Provisional
Probab=96.14 E-value=0.054 Score=48.16 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCceeeeccccCCCCCCccccCCccCCCCcccccC
Q 036308 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKH 116 (190)
Q Consensus 37 G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~~iqgGd~~~~~g~~~~~~~~~~~~~e~~~~~h 116 (190)
--|.|+||.+.||+++.-|.++.--... + ---..+|=..++.++-=|+.. +...+.+||.+-..
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~tGL~~~----~--VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~ 441 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVTGLKTK----P--VGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDK 441 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhcCCccc----c--cceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCc
Confidence 3589999999999999999987654431 0 113355556677555533332 22446677777667
Q ss_pred CCCcEEEEeecCCCCCcceEEEecC------CCC-CCCCCceEEEEEEcchHHHHHHHHcC
Q 036308 117 TGPGLLSMANSGPNSNGCQFFITCA------KCD-WLDNKHVVFGRVLGDGLLVVRKIENV 170 (190)
Q Consensus 117 ~~~G~vs~~~~~~~~~~sqFfItl~------~~~-~ld~~~~vfG~Vi~~G~~vl~~I~~~ 170 (190)
.++|.|++-|......| -.=|=|. |.. .+++ .-++|||+ +++-|+++...
T Consensus 442 V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv--~~e~Lk~lKeG 498 (508)
T PRK00969 442 VKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV--NLEKLKKLKEG 498 (508)
T ss_pred cccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec--ChHHhcccccC
Confidence 77888887765421111 0111112 221 3344 34679999 78888877653
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.25 Score=42.79 Aligned_cols=115 Identities=20% Similarity=0.278 Sum_probs=61.0
Q ss_pred eEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcCc-eee-eccccCCCCCCccccCCccCCCCccccc
Q 036308 38 RIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDF-MIQ-AGDFLKGDGSGCTSIYGHKFDDENFIAK 115 (190)
Q Consensus 38 ~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~~-~iq-gGd~~~~~g~~~~~~~~~~~~~e~~~~~ 115 (190)
-|.||||.+.||.++..|.++..-.. ++ --....|-..++. +++ =|+. .+++.+.+||.+..
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~----kp--VGkL~Vhfay~d~~~vmfegn~----------~~~K~llPEN~P~d 440 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKT----KP--VGKLKVHFAYDDTYLVMFEGNA----------VLAKGLLPENTPAD 440 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccccc----cc--ccceEEEEEeCCceEEEEcCCh----------HHhccCCCCCCchh
Confidence 48999999999999999998755332 11 1233455555652 222 2222 12233555655544
Q ss_pred CCCCcEEEEeecCCCCCcceEEEecCCCCCCC------CCceEEEEEEcchHHHHHHHHcC
Q 036308 116 HTGPGLLSMANSGPNSNGCQFFITCAKCDWLD------NKHVVFGRVLGDGLLVVRKIENV 170 (190)
Q Consensus 116 h~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld------~~~~vfG~Vi~~G~~vl~~I~~~ 170 (190)
...+|.++.-|......| -.=+-|.++..+- ...-++|+|+ +|.+-|..|...
T Consensus 441 ~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe~TNiIGrIv-eg~e~l~~ikeG 499 (512)
T COG4070 441 TVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFEGTNIIGRIV-EGPERLIGIKEG 499 (512)
T ss_pred heecccccccccchhccc-eeEEEeccccccCCCCCccccceeehhhc-cChHHhcccccC
Confidence 444554443332210000 0111122221111 2345789999 999999888763
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=93.98 E-value=0.36 Score=36.33 Aligned_cols=107 Identities=23% Similarity=0.302 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCChhHHHHHHHHHcCccccCCCcccccCceEEEEEcC--ceeeeccccCCCCCCccccCCccCCCCcccc
Q 036308 37 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKD--FMIQAGDFLKGDGSGCTSIYGHKFDDENFIA 114 (190)
Q Consensus 37 G~ivieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~--~~iqgGd~~~~~g~~~~~~~~~~~~~e~~~~ 114 (190)
-.++.+|..|.||+||+.|.++-- |.+..+|-...+ .++.-+++.. .....||...
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~LP-----------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T~ 65 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEALP-----------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHTV 65 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH-------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEES
T ss_pred eEEEEEEcccCChHHHHHHHHhCC-----------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCcc
Confidence 367899999999999999999862 666666655544 3444444310 1123444433
Q ss_pred cCCCCcEEEEe--ec-C----CC-CCcceEEEecC------CCCCCCCCceEEEEEEcchHHHHHHHHc
Q 036308 115 KHTGPGLLSMA--NS-G----PN-SNGCQFFITCA------KCDWLDNKHVVFGRVLGDGLLVVRKIEN 169 (190)
Q Consensus 115 ~h~~~G~vs~~--~~-~----~~-~~~sqFfItl~------~~~~ld~~~~vfG~Vi~~G~~vl~~I~~ 169 (190)
+-.+|-|.+. .. . +. -....+|+--. +.-++- -.+|++|+ +|++-|.++-+
T Consensus 66 -~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~-egle~la~~~~ 130 (147)
T PF12903_consen 66 -TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATIT-EGLEELAEACR 130 (147)
T ss_dssp -S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEE-ESHHHHHHHHH
T ss_pred -cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEc-CCHHHHHHHHH
Confidence 3347877776 11 1 11 11223333222 222222 36899999 99998866644
No 37
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=69.43 E-value=3.9 Score=35.37 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=37.2
Q ss_pred CCCcEEEEeecCCCCCcceEEEecCCCCCCCCCceEEEEEEcchHHHHHHHHc
Q 036308 117 TGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIEN 169 (190)
Q Consensus 117 ~~~G~vs~~~~~~~~~~sqFfItl~~~~~ld~~~~vfG~Vi~~G~~vl~~I~~ 169 (190)
..+|.|.+.|........+.=|++.+.|. |.+.-|+|+|..+-+.+|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 45999999998888888899999999985 88999999999777888888764
No 38
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=51.63 E-value=18 Score=26.10 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCcceEEEecCCCC-------CCCCCceEEEEEEcchHHHHHHHHc
Q 036308 117 TGPGLLSMANSGPNSNGCQFFITCAKCD-------WLDNKHVVFGRVLGDGLLVVRKIEN 169 (190)
Q Consensus 117 ~~~G~vs~~~~~~~~~~sqFfItl~~~~-------~ld~~~~vfG~Vi~~G~~vl~~I~~ 169 (190)
...|-|+....+.+ |.|...+.| .+-....++|||. ++.+.|+++..
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~-~~~~~l~~~~~ 113 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIV-SDLENLKEVKG 113 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEE-C-GGGGGG--T
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEEC-CCHHHHhhCCC
Confidence 35888888754433 888887775 3445689999999 99988877754
No 39
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=38.56 E-value=41 Score=20.74 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=20.1
Q ss_pred chHHHHHHHHcCcCCCCCCCCCCeEEee
Q 036308 159 DGLLVVRKIENVATGPNNRPKLACTIAE 186 (190)
Q Consensus 159 ~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 186 (190)
+|.+||+++.+. .....+.-||.+++
T Consensus 5 sGv~vlRel~r~--~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 5 SGVEVLRELARR--GGGRAAVMPVVFTS 30 (58)
T ss_pred cHHHHHHHHHHh--cCCCCCcCCEEEeC
Confidence 799999999997 34566667777765
No 40
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=31.95 E-value=55 Score=21.00 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCCCceEEEEEEcchHHHHHHHHcCcCCCCCC
Q 036308 146 LDNKHVVFGRVLGDGLLVVRKIENVATGPNNR 177 (190)
Q Consensus 146 ld~~~~vfG~Vi~~G~~vl~~I~~~~~~~~~~ 177 (190)
+|..-.++|||+ +| -+++|.-.++++++.
T Consensus 16 ~d~~G~~vG~vv-eG--d~k~L~G~~vd~~G~ 44 (64)
T PF12396_consen 16 VDDDGNVVGRVV-EG--DPKKLVGKKVDEDGD 44 (64)
T ss_pred ECCCCCEEEEEe-cC--CHHHhcCCcCCCCCC
Confidence 556678999999 99 566677777776553
No 41
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=28.03 E-value=1.3e+02 Score=22.02 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=21.9
Q ss_pred EEEEEcCCCChhHHHHHHHHHcCcc
Q 036308 39 IKMELFADIAPKTAENFRQFCTGEY 63 (190)
Q Consensus 39 ivieL~~~~aP~~~~nF~~l~~~~~ 63 (190)
|.+.+..+..+...+++++++..++
T Consensus 92 i~~~v~gd~~~e~~~~~i~~a~ek~ 116 (137)
T COG1765 92 IHFVVKGDLDEEKLKRAVELAEEKY 116 (137)
T ss_pred EEEEEecCCCHHHHHHHHHHHhccc
Confidence 7888888999999999999998654
No 42
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.51 E-value=1.2e+02 Score=18.43 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=20.6
Q ss_pred CCCCeEEEEEEeCceeceeEEEEEcCCCChh
Q 036308 20 PKNPIVFFDVTIGTIPAGRIKMELFADIAPK 50 (190)
Q Consensus 20 ~~~~~v~~di~v~~~~~G~ivieL~~~~aP~ 50 (190)
++...+.|.+-+++ -||+++||.++.|-.
T Consensus 14 kEgR~ivmRvPleG--GGRLVvEl~~~Ea~~ 42 (51)
T PF11314_consen 14 KEGRGIVMRVPLEG--GGRLVVELNPDEAKE 42 (51)
T ss_pred ecCceEEEEEecCC--CcEEEEEeCHHHHHH
Confidence 34556777777654 599999998776543
No 43
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.36 E-value=51 Score=24.12 Aligned_cols=29 Identities=14% Similarity=0.349 Sum_probs=17.0
Q ss_pred chHHHH-HHHHcCcCC--CCCCCCCCeEEeee
Q 036308 159 DGLLVV-RKIENVATG--PNNRPKLACTIAEC 187 (190)
Q Consensus 159 ~G~~vl-~~I~~~~~~--~~~~P~~~i~I~~c 187 (190)
.||||| ++|.++... ++.++.-.+.|...
T Consensus 18 ~Gmdvln~AI~~l~~~~~~~~w~~V~vsvaps 49 (124)
T cd01271 18 TGMEILNSAIDNLMSSSNKEDWLSVNVNVAPS 49 (124)
T ss_pred ccHHHHHHHHHHHHhcCCcccCceEEEEeCCc
Confidence 499999 888886543 23334444444433
No 44
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=21.90 E-value=3.3e+02 Score=20.02 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=29.8
Q ss_pred eceeEEEEEcCCCCh---------hHHHHHHHHHcCccccCCCcccccCceEEEEEcC
Q 036308 35 PAGRIKMELFADIAP---------KTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKD 83 (190)
Q Consensus 35 ~~G~ivieL~~~~aP---------~~~~nF~~l~~~~~~~~~~~~~Y~g~~f~ri~~~ 83 (190)
..||+.+..-.+.++ ++++.|++....- ..-+-+.|+-++++
T Consensus 11 d~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~ky-------I~veeStFylvvrd 61 (130)
T PF06138_consen 11 DSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKY-------IDVEESTFYLVVRD 61 (130)
T ss_pred cCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhh-------EEecccEEEEEEec
Confidence 378887777654432 3688999887642 33678999999887
Done!