BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036311
         (632 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V84|A Chain A, Crystal Structure Of The Tp0655 (Tppotd) Lipoprotein Of
           Treponema Pallidum
          Length = 343

 Score = 29.6 bits (65), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 14/86 (16%)

Query: 369 KMYGVNNTFKDYAKNGVTFAKYNNDSSGVQNIKKPSGSLLNRWVEPGKFFRESVLKKGSV 428
           + Y V   + DYA N   FAK +  +SG  ++  PSG  +            S++K+  +
Sbjct: 46  QQYNVQVVYDDYASNEDMFAKLSIGASGY-DLVVPSGDFV------------SIMKRKHL 92

Query: 429 MAMPDIQDKMPKRSFLPRTIVSKLPF 454
           +   D+  K+P   F+  ++ +++ +
Sbjct: 93  LEKIDLS-KIPNVQFIKESVRARIAY 117


>pdb|1YFK|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YFK|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|C Chain C, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|D Chain D, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|E Chain E, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|F Chain F, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|G Chain G, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|H Chain H, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|I Chain I, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|J Chain J, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|K Chain K, Crystal Structure Of Human B Type Phosphoglycerate Mutase
 pdb|1YJX|L Chain L, Crystal Structure Of Human B Type Phosphoglycerate Mutase
          Length = 262

 Score = 28.9 bits (63), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 435 QDKMPKRSFLPRTIVSKLPFSSS----KIKDMKEIFHAVDNSSMESIIKEALGDCERA 488
           +D++P    L  TI   LPF +     +IK+ K +  A   +S+  I+K   G  E A
Sbjct: 147 EDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEA 204


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,480,716
Number of Sequences: 62578
Number of extensions: 875588
Number of successful extensions: 1415
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1412
Number of HSP's gapped (non-prelim): 16
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)