Query 036311
Match_columns 632
No_of_seqs 191 out of 294
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 11:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03181 BURP: BURP domain; I 100.0 6.8E-81 1.5E-85 617.8 21.4 213 415-631 1-216 (216)
2 KOG0022 Alcohol dehydrogenase, 53.2 9.4 0.0002 41.9 2.4 30 567-604 29-58 (375)
3 PF06890 Phage_Mu_Gp45: Bacter 25.8 1.4E+02 0.0031 29.6 5.4 52 565-631 43-94 (162)
4 PF13079 DUF3916: Protein of u 25.4 37 0.00081 33.5 1.4 70 39-112 9-82 (153)
5 COG1062 AdhC Zn-dependent alco 15.8 1.3E+02 0.0028 33.6 3.0 32 567-599 14-48 (366)
6 COG2850 Uncharacterized conser 13.2 77 0.0017 35.4 0.6 45 40-93 13-60 (383)
7 PF12048 DUF3530: Protein of u 11.6 2.2E+02 0.0048 30.5 3.4 6 48-53 55-60 (310)
8 PLN03207 stomagen; Provisional 11.5 2.1E+02 0.0046 26.7 2.7 12 6-17 12-23 (113)
9 PF07172 GRP: Glycine rich pro 10.9 1.5E+02 0.0033 26.9 1.6 10 6-15 3-12 (95)
10 PF08121 Toxin_33: Waglerin fa 10.7 92 0.002 21.3 0.1 9 615-623 10-18 (22)
No 1
>PF03181 BURP: BURP domain; InterPro: IPR004873 The BURP domain is a ~230-residue module, which has been named for the four members of the group initially identified, BNM2, USP, RD22, and PG1beta. It is found in the C-terminal part of a number of plant cell wall proteins, which are defined not only by the BURP domain, but also by the overall similarity in their modular construction. The BURP domain proteins consists of either three or four modules: (i) an N-terminal hydrophobic domain - a presumptive transit peptide, joined to (ii) a short conserved segment or other short segment, (iii) an optional segment consisting of repeated units which is unique to each member, and (iv) the C-terminal BURP domain. Although the BURP domain proteins share primary structural features, their expression patterns and the conditions under which they are expressed differ. The presence of the conserved BURP domain in diverse plant proteins suggests an important and fundamental functional role for this domain []. It is possible that the BURP domain represents a general motif for localization of proteins within the cell wall matrix. The other structural domains associated with the BURP domain may specify other target sites for intermolecular interactions []. Some proteins known to contain a BURP domain are listed below [, , ]: Brassica protein BNM2, which is expressed during the induction of microspore embryogenesis. Field bean USPs, abundant non-storage seed proteins with unknown function. Soybean USP-like proteins ADR6 (or SALI5-4A), an auxin-repressible, aluminium-inducible protein and SALI3-2, a protein that is up-regulated by aluminium. Soybean seed coat BURP-domain protein 1 (SCB1). It might play a role in the differentiation of the seed coat parenchyma cells. Arabidopsis RD22 drought induced protein. Maize ZRP2, a protein of unknown function in cortex parenchyma. Tomato PG1beta, the beta-subunit of polygalacturonase isozyme 1 (PG1), which is expressed in ripening fruits. Cereal RAFTIN. It is essential specifically for the maturation phase of pollen development.
Probab=100.00 E-value=6.8e-81 Score=617.82 Aligned_cols=213 Identities=41% Similarity=0.757 Sum_probs=199.7
Q ss_pred ccccccccCCCCceeecCCCc-CcCCCCCCCcccccccCCCCcccHHHHHHHhCCCCCchHHHHHHHHHHHcccCCCCCC
Q 036311 415 GKFFRESVLKKGSVMAMPDIQ-DKMPKRSFLPRTIVSKLPFSSSKIKDMKEIFHAVDNSSMESIIKEALGDCERAPSAGE 493 (632)
Q Consensus 415 g~FF~E~dL~pG~~m~l~~i~-d~~p~~~FLPR~vAdsIPFSs~kL~eIL~~Fsi~~~S~~A~~m~~TL~~CE~pp~~GE 493 (632)
.+||+|+||+||++|+|++.. +..+.++||||++|++||||+++|++||++|+|+++|+||++|++||++||.+|++||
T Consensus 1 ~~fF~e~dL~~G~~m~l~f~~~~~~~~~~fLpr~~A~siPfss~~l~~iL~~Fsi~~~S~~A~~m~~Tl~~Ce~~~~~GE 80 (216)
T PF03181_consen 1 ALFFLEKDLHPGKKMPLYFPKSDNSAKRPFLPRQVADSIPFSSSKLPEILQMFSIPPGSPMAKAMKNTLEECESPPIKGE 80 (216)
T ss_pred CcccCHHHCCCCceeeecCCCCCCCcccccCCHHHhccCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCc
Confidence 379999999999999987643 3336789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhhhHHHHHhhcCC-ccEEEEeeeec-CCcceEEEeeeeeecCCCccceeeecccCCCeeeEEeeecCceEEE
Q 036311 494 TKRCVGSVEDMIDFATSILGR-NVVVRTTENVN-GSKKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVY 571 (632)
Q Consensus 494 tK~CaTSLESMvDFa~S~LG~-~v~~~sT~~~~-~s~q~~~v~~Vk~i~Gg~~~k~V~CH~~~YPYaVyYCH~v~~trvY 571 (632)
+|+|||||||||||++|+||+ +|++++|+... ...|+|+|++|++|.++ +++|+||+|+|||+|||||.++.||||
T Consensus 81 ~k~CaTSLESMvdF~~s~LG~~~v~a~st~~~~~~~~~~y~V~~v~~i~~~--~~~V~CH~~~yPYaVyyCH~~~~t~~y 158 (216)
T PF03181_consen 81 TKYCATSLESMVDFAVSKLGTRNVRALSTEVPKSTPLQNYTVEGVKKIGGG--DKSVVCHKMPYPYAVYYCHSIPPTRVY 158 (216)
T ss_pred CccCcCCHHHHHHHHHHhcCCCccEEEeccccCCCCCccEEEEeeeeecCC--CceEEEcccCCceeEEEeeecCceeEE
Confidence 999999999999999999999 79999998876 56789999999999863 689999999999999999999999999
Q ss_pred EEEeeccCCccccceEEEEeecCCCCCCCCchhHHhhCCCCCCCceeeeeeCCceEEeec
Q 036311 572 EADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTA 631 (632)
Q Consensus 572 ~V~L~g~d~~~ki~~AVAVCH~DTS~WnP~H~aF~~L~vKPG~~pVCHfi~~~~ivWvpa 631 (632)
+|+|++.|++ +++||||||+|||.|||+|+||++||+|||++||||||++++|||||.
T Consensus 159 ~V~l~g~dg~--~~~avavCH~DTS~W~p~h~aF~~L~vkPG~~~VCHf~~~~~ivWv~~ 216 (216)
T PF03181_consen 159 MVPLVGEDGT--KVEAVAVCHLDTSGWNPDHPAFQVLGVKPGTVPVCHFLPNDHIVWVPN 216 (216)
T ss_pred EEEEeecCCc--eEEEEEEEecCCCCCCcchHHHHHhCCCCCCcceEEEeeCCeEEEccC
Confidence 9999999976 368999999999999999999999999999999999999999999983
No 2
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.22 E-value=9.4 Score=41.90 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=22.5
Q ss_pred ceEEEEEEeeccCCccccceEEEEeecCCCCCCCCchh
Q 036311 567 KVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGA 604 (632)
Q Consensus 567 ~trvY~V~L~g~d~~~ki~~AVAVCH~DTS~WnP~H~a 604 (632)
+-+++||.+ || .+.+|||+|...|+-++|.
T Consensus 29 pPka~EVRI-------KI-~~t~vCHTD~~~~~g~~~~ 58 (375)
T KOG0022|consen 29 PPKAHEVRI-------KI-LATGVCHTDAYVWSGKDPE 58 (375)
T ss_pred CCCCceEEE-------EE-EEEeeccccceeecCCCcc
Confidence 446777776 44 5899999999999966443
No 3
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=25.80 E-value=1.4e+02 Score=29.64 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=37.8
Q ss_pred cCceEEEEEEeeccCCccccceEEEEeecCCCCCCCCchhHHhhCCCCCCCceeeeeeCCceEEeec
Q 036311 565 VPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTA 631 (632)
Q Consensus 565 v~~trvY~V~L~g~d~~~ki~~AVAVCH~DTS~WnP~H~aF~~L~vKPG~~pVCHfi~~~~ivWvpa 631 (632)
++.+.++.+.|-|.- .+.|+||- +|..+++-+++||+ ||=|=.+++.||+..
T Consensus 43 p~Ga~~vvl~lGG~r-----s~~Vvia~--------~d~~yR~~~L~~GE--valY~~~G~~I~L~~ 94 (162)
T PF06890_consen 43 PPGAEAVVLFLGGDR-----SHGVVIAV--------EDRRYRPKGLKPGE--VALYDDEGQKIHLKR 94 (162)
T ss_pred CCCCeEEEEEeccCC-----cceEEEEe--------CCccccccCCCCCc--EEEEcCCCCEEEEEe
Confidence 346889888885433 35677775 35567888899996 777778999999864
No 4
>PF13079 DUF3916: Protein of unknown function (DUF3916)
Probab=25.44 E-value=37 Score=33.49 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=53.3
Q ss_pred CCCCCcchhhhhccccccCCCCCCCccccccCCCCCchhhhhhHhh--hhcccccccc--ccccccccccccCCCCcc
Q 036311 39 QNPFTPKAHLIRYWDKEIRSNLPKSPFLLSKASPLNAVDSASFAKL--AAQNALSSVL--PSFCSSAKLFCFPDLSNS 112 (632)
Q Consensus 39 ~~pft~ka~~~ryw~~~~~~~~p~~~f~~~k~spl~~~~~a~~~~l--~~~~~~~~~~--~~~c~~a~l~c~~~~~~~ 112 (632)
.++|..+...-+|||=+||-. ++|+-+|..|. .+..+-+-.| |+++-+..+- -..|--.-|+|.|++-.|
T Consensus 9 t~~~p~~~~~~~YW~~kiPv~---~~fi~s~~t~~-~vkr~c~Q~LIn~a~~Li~~kp~~~~~yRV~~~I~lp~L~~S 82 (153)
T PF13079_consen 9 TPSFPSTFYNDGYWNWKIPVS---QSFIESKKTPR-KVKRLCIQTLINAAEHLIQAKPDDENTYRVVCLISLPDLFNS 82 (153)
T ss_pred CCCCCCcccCCcceeEecccC---HHHHhccCCcH-HHHHHHHHHHHHHHHHHHhCCcCcCCceEEEEEEEcchhhhc
Confidence 578888888889999998864 67888998885 4566666667 4556555553 348888899999999655
No 5
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=15.77 E-value=1.3e+02 Score=33.64 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=21.1
Q ss_pred ceEEEEEEeeccCCcc---ccceEEEEeecCCCCCC
Q 036311 567 KVRVYEADVLDANTKA---KINHGVAICHLDTSAWS 599 (632)
Q Consensus 567 ~trvY~V~L~g~d~~~---ki~~AVAVCH~DTS~Wn 599 (632)
+-.+-+|+|..+.-++ +| +|-.|||+|-..-+
T Consensus 14 Pl~i~ei~l~~P~~gEVlVri-~AtGVCHTD~~~~~ 48 (366)
T COG1062 14 PLEIEEVDLDPPRAGEVLVRI-TATGVCHTDAHTLS 48 (366)
T ss_pred CeEEEEEecCCCCCCeEEEEE-EEeeccccchhhhc
Confidence 4556667776655333 33 68999999976554
No 6
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=13.24 E-value=77 Score=35.44 Aligned_cols=45 Identities=36% Similarity=0.611 Sum_probs=30.5
Q ss_pred CCCCcchhhhhccccc---cCCCCCCCccccccCCCCCchhhhhhHhhhhccccccc
Q 036311 40 NPFTPKAHLIRYWDKE---IRSNLPKSPFLLSKASPLNAVDSASFAKLAAQNALSSV 93 (632)
Q Consensus 40 ~pft~ka~~~ryw~~~---~~~~~p~~~f~~~k~spl~~~~~a~~~~l~~~~~~~~~ 93 (632)
-+-||+-.|-+||.|+ |++.+|- |.++.|| -| ++.||-+....+|
T Consensus 13 ~glt~~~FL~~YWqkKPlliR~a~p~---~~~p~~p---de---La~La~~edV~sr 60 (383)
T COG2850 13 LGLTPEDFLRDYWQKKPLLIRNAFPE---FHSPLSP---DE---LAGLAQEEDVTSR 60 (383)
T ss_pred CCCCHHHHHHHHhhhcchHHhhcccc---cccCCCH---HH---HHHHhccccccch
Confidence 4668999999999887 6777744 5555555 44 5667666555555
No 7
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=11.64 E-value=2.2e+02 Score=30.50 Aligned_cols=6 Identities=50% Similarity=0.689 Sum_probs=2.9
Q ss_pred hhhccc
Q 036311 48 LIRYWD 53 (632)
Q Consensus 48 ~~ryw~ 53 (632)
|.|||.
T Consensus 55 l~~~lp 60 (310)
T PF12048_consen 55 LERYLP 60 (310)
T ss_pred HHhhCC
Confidence 445444
No 8
>PLN03207 stomagen; Provisional
Probab=11.48 E-value=2.1e+02 Score=26.74 Aligned_cols=12 Identities=50% Similarity=0.833 Sum_probs=6.9
Q ss_pred chhHHHHHHHHH
Q 036311 6 SSPLFFLLLLSL 17 (632)
Q Consensus 6 ~~~~~~~~~~~~ 17 (632)
.-+||||+.++|
T Consensus 12 ~~~lffLl~~ll 23 (113)
T PLN03207 12 CLTLFFLLFFLL 23 (113)
T ss_pred hHHHHHHHHHHH
Confidence 346666665555
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=10.86 E-value=1.5e+02 Score=26.93 Aligned_cols=10 Identities=40% Similarity=0.540 Sum_probs=5.5
Q ss_pred chhHHHHHHH
Q 036311 6 SSPLFFLLLL 15 (632)
Q Consensus 6 ~~~~~~~~~~ 15 (632)
||.+.+|.||
T Consensus 3 SK~~llL~l~ 12 (95)
T PF07172_consen 3 SKAFLLLGLL 12 (95)
T ss_pred hhHHHHHHHH
Confidence 5665555544
No 10
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=10.75 E-value=92 Score=21.28 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=7.2
Q ss_pred CceeeeeeC
Q 036311 615 IEVCHWIFE 623 (632)
Q Consensus 615 ~pVCHfi~~ 623 (632)
-|-||+||.
T Consensus 10 yppchyipr 18 (22)
T PF08121_consen 10 YPPCHYIPR 18 (22)
T ss_pred CCCccccCC
Confidence 378999986
Done!