Query 036311
Match_columns 632
No_of_seqs 191 out of 294
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 19:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 18.8 66 0.0023 28.4 2.7 34 458-493 31-65 (118)
2 1obb_A Maltase, alpha-glucosid 10.3 90 0.0031 34.1 1.5 40 586-630 169-208 (480)
3 3pqh_A Gene product 138; beta- 9.7 1.3E+02 0.0045 27.7 2.1 36 585-631 19-54 (127)
4 3tjy_A Effector protein hopab3 7.7 4E+02 0.014 23.2 4.1 38 450-487 35-78 (94)
5 3hgl_A Effector protein hopab2 7.7 4.3E+02 0.015 22.7 4.3 37 451-487 38-80 (85)
6 3zqu_A Probable aromatic acid 7.0 4.4E+02 0.015 25.6 4.6 25 487-512 162-186 (209)
7 1kg1_A NIP1, necrosis inducing 6.3 1.6E+02 0.0055 23.2 0.9 9 271-279 42-50 (60)
8 1otr_A Protein CUE2; protein-p 5.0 4.6E+02 0.016 20.2 2.8 27 457-487 6-32 (49)
9 2ju1_A Erythronolide synthase; 4.9 6.2E+02 0.021 20.0 3.8 44 470-513 52-95 (95)
10 1fr3_A MOP, molybdate/tungstat 4.8 4.4E+02 0.015 19.5 2.6 25 604-629 42-66 (67)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=18.78 E-value=66 Score=28.36 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=26.9
Q ss_pred cHHHHHHHhCCCCCchHHHHHHHHHHH-cccCCCCCC
Q 036311 458 KIKDMKEIFHAVDNSSMESIIKEALGD-CERAPSAGE 493 (632)
Q Consensus 458 kL~eIL~~Fsi~~~S~~A~~m~~TL~~-CE~pp~~GE 493 (632)
.|.+||..|-|+. +.|-.|+.||+. ||+-|.+-|
T Consensus 31 sledilaqfeis~--~sayniqr~l~~ice~hpdece 65 (118)
T 2vqc_A 31 TLEDILAQFEISV--PSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCTTTEE
T ss_pred cHHHHHHHheecc--chHhHHHHHHHHHHhcCCchhh
Confidence 3889999999864 566788899875 999887655
No 2
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=10.30 E-value=90 Score=34.06 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=31.6
Q ss_pred eEEEEeecCCCCCCCCchhHHhhCCCCCCCceeeeeeCCceEEee
Q 036311 586 HGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTT 630 (632)
Q Consensus 586 ~AVAVCH~DTS~WnP~H~aF~~L~vKPG~~pVCHfi~~~~ivWvp 630 (632)
+.+.+||++-+ -.+.. +.|++.|-++. .-.+.-||+.|+.
T Consensus 169 rviG~c~~~~~---~~~~l-~~lgv~~~~v~-~~v~GlNH~~w~~ 208 (480)
T 1obb_A 169 KAVGFCHGHYG---VMEIV-EKLGLEEEKVD-WQVAGVNHGIWLN 208 (480)
T ss_dssp EEEEECSGGGH---HHHHH-HHTTCCGGGEE-EEEEEETTEEEEE
T ss_pred cEEecCCCHHH---HHHHH-HHhCCCHHHce-EEEEeecchhhhh
Confidence 57999999886 35667 99999997653 3568889999983
No 3
>3pqh_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 1.29A {Bacteriophage PHI92}
Probab=9.71 E-value=1.3e+02 Score=27.69 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=27.6
Q ss_pred ceEEEEeecCCCCCCCCchhHHhhCCCCCCCceeeeeeCCceEEeec
Q 036311 585 NHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTA 631 (632)
Q Consensus 585 ~~AVAVCH~DTS~WnP~H~aF~~L~vKPG~~pVCHfi~~~~ivWvpa 631 (632)
.++|+||. +|..+++-++ ||+ ||=+-.+++.||+..
T Consensus 19 S~gVvIa~--------~d~ryR~~gL-~GE--vaiY~~~G~~I~Lk~ 54 (127)
T 3pqh_A 19 SEKVIISN--------NKQTYASFDP-NGN--ISVYNTQGMKIDMTP 54 (127)
T ss_dssp -CCEEEEE--------TTTEEEEECT-TSC--EEEEETTSCEEEEET
T ss_pred cccEEEEe--------CCcccccCCC-CCc--EEEEcCCCCEEEEec
Confidence 35788887 3667888888 995 777778899999865
No 4
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=7.75 E-value=4e+02 Score=23.20 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=30.6
Q ss_pred ccCCCCcccHHHHHHHh------CCCCCchHHHHHHHHHHHccc
Q 036311 450 SKLPFSSSKIKDMKEIF------HAVDNSSMESIIKEALGDCER 487 (632)
Q Consensus 450 dsIPFSs~kL~eIL~~F------si~~~S~~A~~m~~TL~~CE~ 487 (632)
+.|-||.-...-+|+.| +|.++|.+|..++.+|+.-.+
T Consensus 35 ~~valsr~eq~Il~qHFPnM~~~gI~~~seLA~elR~aLrrav~ 78 (94)
T 3tjy_A 35 EEMILSRAEQNVFLQHFPDMLPCGIDRNSELAIALREALRRADS 78 (94)
T ss_dssp CCCCCCHHHHHHHHHHCTTHHHHCCCTTSHHHHHHHHHHHHHHC
T ss_pred CchhhhHHHHHHHHHHCcccccccCCCccHHHHHHHHHHHHHHH
Confidence 34556666777778877 899999999999999998765
No 5
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=7.74 E-value=4.3e+02 Score=22.71 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=29.0
Q ss_pred cCCCCcccHHHHHHHh------CCCCCchHHHHHHHHHHHccc
Q 036311 451 KLPFSSSKIKDMKEIF------HAVDNSSMESIIKEALGDCER 487 (632)
Q Consensus 451 sIPFSs~kL~eIL~~F------si~~~S~~A~~m~~TL~~CE~ 487 (632)
.|-||.....-+++.| +|..+|.+|..++.+|+.-.+
T Consensus 38 ~valsr~e~~il~qHFPnm~~~Gi~~~S~LA~~lR~alrr~v~ 80 (85)
T 3hgl_A 38 AVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVH 80 (85)
T ss_dssp CCCCCHHHHHHHHHHCTTHHHHCCCTTCHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHChhhhhccCCCCCHHHHHHHHHHHHHHH
Confidence 4456666667777777 899999999999999987544
No 6
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=6.96 E-value=4.4e+02 Score=25.57 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.5
Q ss_pred cCCCCCCcccccCchhhhHHHHHhhc
Q 036311 487 RAPSAGETKRCVGSVEDMIDFATSIL 512 (632)
Q Consensus 487 ~pp~~GEtK~CaTSLESMvDFa~S~L 512 (632)
-||..|. -.+..|+|+|+||++.+.
T Consensus 162 ipp~~g~-ya~p~~iediv~~vv~r~ 186 (209)
T 3zqu_A 162 LPAAPGF-YHQPQSVEDLVDFVVARI 186 (209)
T ss_dssp CCSCCCC-TTCCCSHHHHHHHHHHHH
T ss_pred eCCCccc-ccCCCCHHHHHHHHHHHH
Confidence 3777776 579999999999998764
No 7
>1kg1_A NIP1, necrosis inducing protein 1; antiparalel beta sheets, toxin; NMR {Rhynchosporium secalis} SCOP: g.70.1.1
Probab=6.32 E-value=1.6e+02 Score=23.18 Aligned_cols=9 Identities=67% Similarity=1.350 Sum_probs=6.0
Q ss_pred ccccCCCCC
Q 036311 271 SNYGEGANG 279 (632)
Q Consensus 271 ~~Yg~~gN~ 279 (632)
-+||+|||+
T Consensus 42 csygeggng 50 (60)
T 1kg1_A 42 CSYGEGGNG 50 (60)
T ss_dssp CCBCTTSSC
T ss_pred EeecCCCCc
Confidence 467777765
No 8
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=5.01 E-value=4.6e+02 Score=20.18 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=19.4
Q ss_pred ccHHHHHHHhCCCCCchHHHHHHHHHHHccc
Q 036311 457 SKIKDMKEIFHAVDNSSMESIIKEALGDCER 487 (632)
Q Consensus 457 ~kL~eIL~~Fsi~~~S~~A~~m~~TL~~CE~ 487 (632)
+++..|++|| |+-. ...|+.+|+.|..
T Consensus 6 ~~v~~L~EMF---P~~~-~~~ik~~L~~~~G 32 (49)
T 1otr_A 6 SKLSILMDMF---PAIS-KSKLQVHLLENNN 32 (49)
T ss_dssp HHHHHHHHHC---SSSC-HHHHHHHHHHTTT
T ss_pred HHHHHHHHHC---CCCC-HHHHHHHHHHcCC
Confidence 5788899999 3333 3478888888864
No 9
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=4.93 E-value=6.2e+02 Score=19.97 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=30.3
Q ss_pred CCchHHHHHHHHHHHcccCCCCCCcccccCchhhhHHHHHhhcC
Q 036311 470 DNSSMESIIKEALGDCERAPSAGETKRCVGSVEDMIDFATSILG 513 (632)
Q Consensus 470 ~~S~~A~~m~~TL~~CE~pp~~GEtK~CaTSLESMvDFa~S~LG 513 (632)
-+|-++-.|...|+.--.-.+.-..-+-..++++|+++....||
T Consensus 52 ~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~lg 95 (95)
T 2ju1_A 52 FDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAELG 95 (95)
T ss_dssp CSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHHHHHHHcC
Confidence 47888888888887643333333444556788999998887775
No 10
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=4.77 E-value=4.4e+02 Score=19.54 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=17.5
Q ss_pred hHHhhCCCCCCCceeeeeeCCceEEe
Q 036311 604 AFLALGSGPGKIEVCHWIFENDMTWT 629 (632)
Q Consensus 604 aF~~L~vKPG~~pVCHfi~~~~ivWv 629 (632)
+.+.|+++||+ +|+=.+...+++..
T Consensus 42 s~~~l~L~~G~-~V~~~ika~~v~l~ 66 (67)
T 1fr3_A 42 SVADLDLVPGD-KVTALVKATEMEVL 66 (67)
T ss_dssp HHHHHTCCTTC-EEEEEECGGGCEEE
T ss_pred HHHhCCCCCCC-EEEEEEecceEEEe
Confidence 66789999997 67655655555543
Done!