BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036312
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 171 RDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYV 229
+ D ++V ++LYAL+K ATEGPC P+P L ++KW+AW LG++ E A + YV
Sbjct: 31 KKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYV 89
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 151 FATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKW 210
F AVK+V + + S DD L Y +K AT G C P+P L L + KW
Sbjct: 14 FDAAVKYVSNTTTMMASN---DDKLC-----FYKYYKQATVGDCNKPKPGMLQLQEKYKW 65
Query: 211 NAWQKLGNMNPEEAMERYVALLSDRVPDWK 240
AW L M+ E A E YV LL P W+
Sbjct: 66 EAWNALRGMSTESAKEAYVKLLDTLAPSWR 95
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 148 ENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSAR 207
E F AVK + QS +++ ++ Y+ +K ATEGPC+ +P R
Sbjct: 25 ETRFEAAVKVI-----QSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGR 79
Query: 208 SKWNAWQKLGNMNPEEAMERYV 229
KW+AW LG+M EEAM YV
Sbjct: 80 YKWDAWSSLGDMTKEEAMIAYV 101
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 180 MELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDRVPDW 239
+ LYA +K G C P+P + KW AW+ LG+ +P +AM+ Y+A++ P W
Sbjct: 32 LYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGW 91
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 180 MELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVA---LLSDRV 236
+ Y+ +K AT GPC P+P R KW+AW LG M+ EEAM Y+ L++ +V
Sbjct: 36 LRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKV 95
Query: 237 PD 238
D
Sbjct: 96 ID 97
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 176 SDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDR 235
+++ ++LY +K +T G C +P R K+ AW+ + N+N E+A +RYV ++S+
Sbjct: 24 NELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEI 83
Query: 236 VPDWKE 241
P W++
Sbjct: 84 FPYWQD 89
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From
Yeast
Length = 86
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 176 SDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALL 232
+D +ELYAL+K AT G +P + R KW AW+ L + E+A + Y+AL+
Sbjct: 21 TDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALV 77
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 182 LYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYV 229
+Y+ +K AT G +P L ++KW+AW +L + E+AM+ Y+
Sbjct: 27 IYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYI 74
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human
Acbp
Length = 86
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 182 LYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYV 229
+Y +K AT G +P L + ++KW+AW +L + E+AM+ Y+
Sbjct: 27 IYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYI 74
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human L-Acbp
Length = 87
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 182 LYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYV 229
+Y +K AT G +P L + ++KW+AW +L + E+AM+ Y+
Sbjct: 28 IYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYI 75
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A Binding
Protein From Bovine Liver. Structural Refinement Using
Heteronuclear Multidimensional Nmr Spectroscopy
Length = 86
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 182 LYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYV 229
+Y+ +K AT G +P L ++KW+AW +L + E+AM+ Y+
Sbjct: 27 IYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYI 74
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 177 DVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALL 232
D + Y K AT G +P + + ++KW+AW+ + + E A ++YV L
Sbjct: 29 DEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKL 84
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 181 ELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVA 230
ELY L+K A G P L L ++KW AW ++ E+A Y++
Sbjct: 29 ELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYIS 78
>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX
Length = 511
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 205 SAR-SKWNAWQKLGNMNPEEAMERYVALLSD 234
SAR S + W+K MN E+AM +Y+AL+ +
Sbjct: 383 SARASIIDKWRKFQGMNQEQAMAKYMALIKE 413
>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound
To Its Specific Cargo, Dcc
pdb|3AU5|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette
pdb|3AU5|B Chain B, Structure Of The Human Myosin-X Myth4-Ferm Cassette
Length = 555
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 205 SAR-SKWNAWQKLGNMNPEEAMERYVALLSD 234
SAR S + W+K MN E+AM +Y+AL+ +
Sbjct: 416 SARASIIDKWRKFQGMNQEQAMAKYMALIKE 446
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 183 YALHKIATEGPCRD------PQPMPLMLSARSKWNAWQKLGNMNPE----EAMERYVALL 232
Y L + +GP D QP L+ ++ + W WQ+LG P ++ Y AL+
Sbjct: 47 YDLWALVQDGPVEDLNQTFRTQPA-LLAASVAIWRVWQQLGLEQPAVLAGHSLGEYSALV 105
Query: 233 SDRVPDWKE 241
V D+K+
Sbjct: 106 CAGVIDFKQ 114
>pdb|3QPB|A Chain A, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|B Chain B, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|C Chain C, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|D Chain D, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|E Chain E, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|F Chain F, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|G Chain G, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|H Chain H, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|I Chain I, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|J Chain J, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|K Chain K, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|L Chain L, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|M Chain M, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|N Chain N, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|O Chain O, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|P Chain P, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|Q Chain Q, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
pdb|3QPB|R Chain R, Crystal Structure Of Streptococcus Pyogenes Uridine
Phosphorylase Reveals A Subclass Of The Np-I Superfamily
Length = 282
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 194 CRD-------PQPMPLMLSARSKWNAWQKLGNMNPE-EAMERYVA 230
C+D P+ MP+ +KW AW++LG E E+ +VA
Sbjct: 184 CKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVA 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.126 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,100,421
Number of Sequences: 62578
Number of extensions: 325153
Number of successful extensions: 776
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 29
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)