BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036314
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 53/299 (17%)
Query: 23 HDDWVSAVDGSNPGFILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKYV 81
HD V A+ ++ G +++G D RVW G CTH+ EGH V ++I++ +KY
Sbjct: 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY- 219
Query: 82 TVATASKDQTLRLWKFDAEE------------LVNH-PKKIRSF-KILRGHKASVHSIAA 127
+ T S+D TL +WK E LV H P++ F +LRGH ASV +++
Sbjct: 220 -IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 128 ETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ 187
GN+V SGS+D T+ +W D A + + + L GHT
Sbjct: 279 H--GNIVVSGSYDNTLIVW-----DVA--------------------QMKCLYILSGHTD 311
Query: 188 CVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG 246
+ S ++ +++ SAS D ++R WD+E G+ + + AL + + + +
Sbjct: 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL--VGLLRLSDKFLVSAA 369
Query: 247 SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA 305
+D +R WD +FS H++ +SA S L+S S + + +++LR+
Sbjct: 370 ADGSIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 49/235 (20%)
Query: 105 HPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRK 164
+PK + LRGH SV + + N V +G+ D I ++ SI K+
Sbjct: 107 NPKFVPQRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYD-----------SINKK- 153
Query: 165 GNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF 224
+ L GH V ++ + + S S D +VR WD++ G + +F
Sbjct: 154 -------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-CTHVF 199
Query: 225 CG--KALNCIDI-GGEGSALIAAGGSDPILRIWDPRKPGTSAP----------VFQFSSH 271
G + C+DI + I G D L +W K +S P VF
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE-SSVPDHGEEHDYPLVFHTPEE 258
Query: 272 NSW-ISACKWHNKSWFHL-------ISASYDGKVMLWDLRTAWPLSVIDSHKDKV 318
N + + + H S + +S SYD +++WD+ L ++ H D++
Sbjct: 259 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
+ G D ++R++D + Q S H+ + A K+ + L+S S D V +WD
Sbjct: 135 VITGADDKMIRVYDSI---NKKFLLQLSGHDGGVWALKYAHGGI--LVSGSTDRTVRVWD 189
Query: 302 LRTAWPLSVIDSHKDKVLCAD---WWRGDSVISGGVDSKLCV 340
++ V + H V C D + +++G D+ L V
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 103/286 (36%), Gaps = 74/286 (25%)
Query: 36 GFILTGCYDNLGRVWKAGGVCTHI-LEGHCGAVSSVNIIKSDGLKYV---TVATASKDQT 91
+++TG D + RV+ + + L GH G V + LKY + + S D+T
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA--------LKYAHGGILVSGSTDRT 184
Query: 92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM--VCSGSWDCTISLWRTN 149
+R+W KK + GH ++V + N+ + +GS D T+ +W+
Sbjct: 185 VRVWDI---------KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 150 DSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSV 209
+ + ++ P+ + L GH V +V + S S+D+++
Sbjct: 236 KESSVPDHG--EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-GHGNIVVSGSYDNTL 292
Query: 210 RTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPIL-RIWDPRKPGTSAPVFQF 268
WDV K C+ I +G +D I I+D +
Sbjct: 293 IVWDVAQMK------------CL--------YILSGHTDRIYSTIYDHERK--------- 323
Query: 269 SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
C ISAS D + +WDL + + H
Sbjct: 324 --------RC----------ISASMDTTIRIWDLENGELMYTLQGH 351
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 139/299 (46%), Gaps = 53/299 (17%)
Query: 23 HDDWVSAVDGSNPGFILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKYV 81
HD V A+ ++ G +++G D RVW G CTH+ EGH V ++I++ +KY
Sbjct: 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY- 219
Query: 82 TVATASKDQTLRLWKFDAEE------------LVNH-PKKIRSF-KILRGHKASVHSIAA 127
+ T S+D TL +WK E LV H P++ F +LRGH ASV +++
Sbjct: 220 -IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSG 278
Query: 128 ETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ 187
GN+V SGS+D T+ +W D A + + + L GHT
Sbjct: 279 H--GNIVVSGSYDNTLIVW-----DVA--------------------QXKCLYILSGHTD 311
Query: 188 CVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG 246
+ S ++ +++ SAS D ++R WD+E G+ + AL + + + +
Sbjct: 312 RIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTAL--VGLLRLSDKFLVSAA 369
Query: 247 SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA 305
+D +R WD +FS H++ +SA S L+S S + + +++LR+
Sbjct: 370 ADGSIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 49/235 (20%)
Query: 105 HPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRK 164
+PK + LRGH SV + + N V +G+ D I ++ SI K+
Sbjct: 107 NPKFVPQRTTLRGHXTSVIT-CLQFEDNYVITGADDKXIRVYD-----------SINKK- 153
Query: 165 GNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF 224
+ L GH V ++ + + S S D +VR WD++ G + +F
Sbjct: 154 -------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-CTHVF 199
Query: 225 CG--KALNCIDI-GGEGSALIAAGGSDPILRIWDPRKPGTSAP----------VFQFSSH 271
G + C+DI + I G D L +W K +S P VF
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE-SSVPDHGEEHDYPLVFHTPEE 258
Query: 272 NSW-ISACKWHNKSWFHL-------ISASYDGKVMLWDLRTAWPLSVIDSHKDKV 318
N + + + H S + +S SYD +++WD+ L ++ H D++
Sbjct: 259 NPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRI 313
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
+ G D +R++D + Q S H+ + A K+ + L+S S D V +WD
Sbjct: 135 VITGADDKXIRVYDSI---NKKFLLQLSGHDGGVWALKYAHGGI--LVSGSTDRTVRVWD 189
Query: 302 LRTAWPLSVIDSHKDKVLCAD---WWRGDSVISGGVDSKLCV 340
++ V + H V C D + +++G D+ L V
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 101/286 (35%), Gaps = 74/286 (25%)
Query: 36 GFILTGCYDNLGRVWKAGGVCTHI-LEGHCGAVSSVNIIKSDGLKYV---TVATASKDQT 91
+++TG D RV+ + + L GH G V + LKY + + S D+T
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWA--------LKYAHGGILVSGSTDRT 184
Query: 92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM--VCSGSWDCTISLWRTN 149
+R+W KK + GH ++V + N+ + +GS D T+ +W+
Sbjct: 185 VRVWDI---------KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 150 DSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSV 209
+ + ++ P+ + L GH V +V + S S+D+++
Sbjct: 236 KESSVPDHG--EEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS-GHGNIVVSGSYDNTL 292
Query: 210 RTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPIL-RIWDPRKPGTSAPVFQF 268
WDV K C+ I +G +D I I+D +
Sbjct: 293 IVWDVAQXK------------CL--------YILSGHTDRIYSTIYDHERK--------- 323
Query: 269 SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
C ISAS D + +WDL + H
Sbjct: 324 --------RC----------ISASXDTTIRIWDLENGELXYTLQGH 351
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 120/271 (44%), Gaps = 51/271 (18%)
Query: 37 FILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW 95
I++G D +VW A G C H L GH V ++ L V + S+D TLR+W
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH------LHEKRVVSGSRDATLRVW 224
Query: 96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAG 155
+ + ++ +L GH A+V + + G V SG++D + +W
Sbjct: 225 DIETGQCLH---------VLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVW--------- 264
Query: 156 NQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVE 215
+P+ E + TL GHT V S+ + + S S D S+R WDVE
Sbjct: 265 ---------------DPETE-TCLHTLQGHTNRVYSLQFDGIHVV-SGSLDTSIRVWDVE 307
Query: 216 MGKDLSDIFCGKALNCIDIGGE-GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW 274
G + + ++L G E ++ +G +D ++IWD K G Q + +
Sbjct: 308 TGNCIHTLTGHQSLTS---GMELKDNILVSGNADSTVKIWDI-KTGQCLQTLQGPNKHQS 363
Query: 275 ISACKWHNKSWFHLISASYDGKVMLWDLRTA 305
C NK++ +I++S DG V LWDL+T
Sbjct: 364 AVTCLQFNKNF--VITSSDDGTVKLWDLKTG 392
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 50/258 (19%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+ + S D TL++W + + L GH V S ++ N++ SGS D T
Sbjct: 132 IVSGSDDNTLKVWSAVTG---------KCLRTLVGHTGGVWS--SQMRDNIIISGSTDRT 180
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYS 202
+ +W GE I TL GHT V + ++ + S
Sbjct: 181 LKVWNAE-------------------------TGECIHTLYGHTSTVRCM-HLHEKRVVS 214
Query: 203 ASWDHSVRTWDVEMGKDLSDIFCGK--ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG 260
S D ++R WD+E G+ L + G A+ C+ G + +G D ++++WDP
Sbjct: 215 GSRDATLRVWDIETGQCLH-VLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPE--- 267
Query: 261 TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLC 320
T + H + + + ++ H++S S D + +WD+ T + + H+ +
Sbjct: 268 TETCLHTLQGHTNRVYSLQFDG---IHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTS 323
Query: 321 ADWWRGDSVISGGVDSKL 338
+ + ++SG DS +
Sbjct: 324 GMELKDNILVSGNADSTV 341
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 44/237 (18%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNN 167
+++S K+L+GH V + + GN + SGS D T+ +W
Sbjct: 107 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVW--------------------- 144
Query: 168 QVEEPQLEGEAISTLVGHTQCVSSVVWPQQ---ETIYSASWDHSVRTWDVEMGKDLSDIF 224
+ G+ + TLVGHT VW Q I S S D +++ W+ E G+ + ++
Sbjct: 145 ----SAVTGKCLRTLVGHT----GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY 196
Query: 225 CGKA-LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNK 283
+ + C+ + + +G D LR+WD T + H + + ++ +
Sbjct: 197 GHTSTVRCMHLH---EKRVVSGSRDATLRVWDIE---TGQCLHVLMGHVAAVRCVQYDGR 250
Query: 284 SWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCV 340
++S +YD V +WD T L + H ++V + G V+SG +D+ + V
Sbjct: 251 ---RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ-FDGIHVVSGSLDTSIRV 303
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 120/273 (43%), Gaps = 54/273 (19%)
Query: 38 ILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK 96
I+TG D+ RVW G + L HC AV + ++G+ + T SKD+++ +W
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGM----MVTCSKDRSIAVWD 239
Query: 97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN 156
+ P I ++L GH+A+V+ + + + S S D TI +W T+
Sbjct: 240 MAS------PTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGDRTIKVWNTSTC----- 286
Query: 157 QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEM 216
E + TL GH + ++ + + + + S S D+++R WD+E
Sbjct: 287 --------------------EFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIEC 325
Query: 217 GKDLSDIFCGKAL-NCIDIGGEGSALIAAGGSDPILRIWD------PRKPGTSAPVFQFS 269
G L + + L CI + I +G D +++WD PR P + +
Sbjct: 326 GACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382
Query: 270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDL 302
H+ + ++ F ++S+S+D +++WD
Sbjct: 383 EHSGRVFRLQFDE---FQIVSSSHDDTILIWDF 412
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 60/298 (20%)
Query: 50 WKAGGVCTHILEG-HCGAVSS--VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHP 106
W+ G H L+ HC + +S V ++ D K + + +D T+++W + E
Sbjct: 116 WRCG---RHSLQRIHCRSETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKNTLE----- 164
Query: 107 KKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN 166
+IL GH SV + + ++ +GS D T+ +W N
Sbjct: 165 ----CKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVN----------------- 201
Query: 167 NQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKD--LSDIF 224
GE ++TL+ H + V + + + + S D S+ WD+ D L +
Sbjct: 202 --------TGEMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVL 252
Query: 225 CGK--ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHN 282
G A+N +D + I + D +++W+ T V + H I+ ++ +
Sbjct: 253 VGHRAAVNVVDFDDK---YIVSASGDRTIKVWNT---STCEFVRTLNGHKRGIACLQYRD 306
Query: 283 KSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCV 340
+ ++S S D + LWD+ L V++ H++ V C + ++SG D K+ V
Sbjct: 307 RL---VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDNKRIVSGAYDGKIKV 360
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 67/304 (22%)
Query: 23 HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
H+ WV+ A P +L+ D WK G V +GH V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-T 74
Query: 75 SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
+DG ++ AS D+TLRLW E +++ GHK+ V S+ + +M+
Sbjct: 75 ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
SGS D TI +W ++G+ ++TL+GH VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
P ++ TI SA D V+ W++ + +D F G +N + +G+ LIA+
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
G D + +W+ ++ S+ + S N+ W +A S D + ++
Sbjct: 215 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
DLR
Sbjct: 272 DDLR 275
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 241 LIAAGGSDPILRIW----DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
L+ + D L W D +K G PV F H+ + C + L SAS+D
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQDCTLTADGAYAL-SASWDKT 88
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLCADWWRGDS-VISGGVDSKLCV 340
+ LWD+ T HK V+ D + S +ISG D + V
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 67/304 (22%)
Query: 23 HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
H+ WV+ A P +L+ D WK G V +GH V +
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-T 68
Query: 75 SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
+DG ++ AS D+TLRLW E +++ GHK+ V S+ + +M+
Sbjct: 69 ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 116
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
SGS D TI +W ++G+ ++TL+GH VS V V
Sbjct: 117 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 150
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
P ++ TI SA D V+ W++ + +D F G +N + +G+ LIA+
Sbjct: 151 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 208
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
G D + +W+ ++ S+ + S N+ W +A S D + ++
Sbjct: 209 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 265
Query: 300 WDLR 303
DLR
Sbjct: 266 DDLR 269
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 241 LIAAGGSDPILRIW----DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
L+ + D L W D +K G PV F H+ + C + L SAS+D
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQDCTLTADGAYAL-SASWDKT 82
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLCADWWRGDS-VISGGVDSKLCV 340
+ LWD+ T HK V+ D + S +ISG D + V
Sbjct: 83 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 43 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 88
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 123
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 184 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 239
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 240 LKLWDYSKGKCLKTYTGHKNEKYC 263
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 100
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 101 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 156
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 172 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 230
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 231 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 279
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 280 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 314
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 315 ENIIASAALENDKTIKLW 332
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 80 SNLLVSASDDKTLKIWDVS---SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 75/191 (39%), Gaps = 43/191 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 209
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 210 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 259 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 293
Query: 197 QETIYSASWDH 207
+ I SA+ ++
Sbjct: 294 ENIIASAALEN 304
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 67/304 (22%)
Query: 23 HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
H+ WV+ A P +L+ D WK G V +GH V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT- 74
Query: 75 SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
+DG ++ AS D+TLRLW E +++ GHK+ V S+ + +M+
Sbjct: 75 ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
SGS D TI +W ++G+ ++TL+GH VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
P ++ TI SA D V+ W++ + +D F G +N + +G+ LIA+
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
G D + +W+ ++ S+ + S N+ W +A S D + ++
Sbjct: 215 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
DLR
Sbjct: 272 DDLR 275
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 241 LIAAGGSDPILRIW----DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
L+ + D L W D +K G PV F H+ + C + L SAS+D
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQDCTLTADGAYAL-SASWDKT 88
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLCADWWRGDS-VISGGVDSKLCV 340
+ LWD+ T HK V+ D + S +ISG D + V
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 80 SNLLVSASDDKTLKIWDVS---SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 75/191 (39%), Gaps = 43/191 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 209
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 210 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 259 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 293
Query: 197 QETIYSASWDH 207
+ I SA+ ++
Sbjct: 294 ENIIASAALEN 304
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 67/304 (22%)
Query: 23 HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
H+ WV+ A P +L+ D WK G V +GH V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT- 74
Query: 75 SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
+DG +AS D+TLRLW E +++ GHK+ V S+ + +M+
Sbjct: 75 ADG---AYALSASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
SGS D TI +W ++G+ ++TL+GH VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
P ++ TI SA D V+ W++ + +D F G +N + +G+ LIA+
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
G D + +W+ ++ S+ + S N+ W +A S D + ++
Sbjct: 215 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
DLR
Sbjct: 272 DDLR 275
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 241 LIAAGGSDPILRIW----DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
L+ + D L W D +K G PV F H+ + C + L SAS+D
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQDCTLTADGAYAL-SASWDKT 88
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLCADWWRGDS-VISGGVDSKLCV 340
+ LWD+ T HK V+ D + S +ISG D + V
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 122/304 (40%), Gaps = 54/304 (17%)
Query: 38 ILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF 97
I + D ++W G L GH +V V DG T+A+AS D+T++LW
Sbjct: 195 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV-AFSPDGQ---TIASASDDKTVKLWNR 250
Query: 98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQ 157
+ + L + L GH +SV+ +A G + S S D T+ LW N
Sbjct: 251 NGQLL----------QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-------- 292
Query: 158 VSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEM 216
G+ + TL GH+ V V + P +TI SAS D +V+ W+
Sbjct: 293 ------------------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 333
Query: 217 GKDLSDIFCGKALNC--IDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQ-FSSHNS 273
G+ L G + + + +G IA+ D +++W+ + + Q + H+S
Sbjct: 334 GQHL-QTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR-----NGQLLQTLTGHSS 386
Query: 274 WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGG 333
+ + + SAS D V LW+ R L + H V + D I+
Sbjct: 387 SVRGVAFSPDGQT-IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASA 444
Query: 334 VDSK 337
D K
Sbjct: 445 SDDK 448
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 46/221 (20%)
Query: 38 ILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF 97
I + D ++W G L GH +V V D T+A+AS D+T++LW
Sbjct: 400 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDD----QTIASASDDKTVKLWNR 455
Query: 98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQ 157
+ + L + L GH +SV +A G + S S D T+ LW N
Sbjct: 456 NGQLL----------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------- 497
Query: 158 VSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEM 216
G+ + TL GH+ V V + P +TI SAS D +V+ W+
Sbjct: 498 ------------------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--R 537
Query: 217 GKDLSDIFCGKALNC--IDIGGEGSALIAAGGSDPILRIWD 255
L G + + + +G IA+ SD +++W+
Sbjct: 538 NGQLLQTLTGHSSSVWGVAFSPDGQT-IASASSDKTVKLWN 577
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 123/299 (41%), Gaps = 41/299 (13%)
Query: 38 ILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF 97
I + D ++W G L GH +V V DG T+A+AS D+T++LW
Sbjct: 31 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV-AFSPDGQ---TIASASDDKTVKLWNR 86
Query: 98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND---SDAA 154
+ + L + L GH +SV +A G + S S D T+ LW N
Sbjct: 87 NGQLL----------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 155 GNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIY 201
G+ S I + V+ G+ + TL GH+ V V + P +TI
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA 196
Query: 202 SASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG 260
SAS D +V+ W+ G+ L + ++ + +G IA+ D +++W+
Sbjct: 197 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR---- 250
Query: 261 TSAPVFQ-FSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKV 318
+ + Q + H+S ++ + + SAS D V LW+ R L + H V
Sbjct: 251 -NGQLLQTLTGHSSSVNGVAFRPDGQT-IASASDDKTVKLWN-RNGQLLQTLTGHSSSV 306
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 105/262 (40%), Gaps = 52/262 (19%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
LE H +V V DG T+A+AS D+T++LW + + L + L GH
Sbjct: 12 LEAHSSSVRGV-AFSPDGQ---TIASASDDKTVKLWNRNGQLL----------QTLTGHS 57
Query: 120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI 179
+SV +A G + S S D T+ LW N G+ +
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLWNRN--------------------------GQLL 91
Query: 180 STLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNC--IDIGG 236
TL GH+ V V + P +TI SAS D +V+ W+ L G + + +
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSP 149
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+G IA+ D +++W+ + G S + W A ++ + SAS D
Sbjct: 150 DGQT-IASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQT---IASASDDKT 203
Query: 297 VMLWDLRTAWPLSVIDSHKDKV 318
V LW+ R L + H V
Sbjct: 204 VKLWN-RNGQLLQTLTGHSSSV 224
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 25 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 70
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 105
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 166 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 221
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYC 245
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 82
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 83 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 138
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 212
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 213 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 262 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 296
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 297 ENIIASAALENDKTIKLW 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 41 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 86
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 121
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 182 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 237
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYC 261
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 98
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 99 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 154
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 170 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 228
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 229 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 278 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 312
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 313 ENIIASAALENDKTIKLW 330
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 36 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 81
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 116
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 177 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 232
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYC 256
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 93
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 94 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 149
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 165 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 223
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 224 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 273 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 307
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 308 ENIIASAALENDKTIKLW 325
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 25 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 70
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 105
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 166 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 221
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYC 245
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 82
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 83 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 138
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 212
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 213 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 262 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 296
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 297 ENIIASAALENDKTIKLW 314
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 67/304 (22%)
Query: 23 HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
H+ WV+ A P +L+ D WK G V +GH V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-T 74
Query: 75 SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
+DG ++ AS D+TLRLW E +++ GHK+ V S+ + +M+
Sbjct: 75 ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
SGS D TI +W ++G+ ++TL+GH VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
P ++ TI SA D V+ W++ + +D F G +N + +G+ LIA+
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
G D + +W+ ++ S+ + S N+ W +A S D + ++
Sbjct: 215 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
DLR
Sbjct: 272 DDLR 275
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 241 LIAAGGSDPILRIW----DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
L+ + D L W D +K G PV F H+ + C + L SAS+D
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQDCTLTADGAYAL-SASWDKT 88
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLCADWWRGDS-VISGGVDSKLCV 340
+ LWD+ T HK V+ D + S +ISG D + V
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 25 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 70
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 105
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 166 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 221
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYC 245
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 82
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 83 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 138
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 212
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 213 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 262 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 296
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 297 ENIIASAALENDKTIKLW 314
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 19 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 64
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 99
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 160 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 215
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYC 239
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 76
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 77 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 132
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 206
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 207 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 256 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 290
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 291 ENIIASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 20 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 65
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 100
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 161 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 216
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 217 LKLWDYSKGKCLKTYTGHKNEKYC 240
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 77
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 78 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 133
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 149 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 207
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 208 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 257 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 291
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 292 ENIIASAALENDKTIKLW 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 24 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 69
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 70 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 104
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 165 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 220
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 221 LKLWDYSKGKCLKTYTGHKNEKYC 244
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 81
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 82 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 137
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 153 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 211
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 212 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 261 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 295
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 296 ENIIASAALENDKTIKLW 313
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 19 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 64
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 99
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 160 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 215
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYC 239
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 76
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 77 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 132
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 206
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 207 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 256 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 290
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 291 ENIIASAALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 15 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 60
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 95
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 156 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 211
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 212 LKLWDYSKGKCLKTYTGHKNEKYC 235
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 72
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 73 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 128
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 202
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 203 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 252 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 286
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 287 ENIIASAALENDKTIKLW 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 18 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 63
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 98
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 159 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 214
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 215 LKLWDYSKGKCLKTYTGHKNEKYC 238
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 75
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 76 SNLLVSASDDKTLKIWDVS---SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 131
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 147 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 205
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 206 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 255 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 289
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 290 ENIIASAALENDKTIKLW 307
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Query: 171 EPQLEGEAISTLVGHTQCVSSVVWPQQETIY--SASWDHSVRTWDVEMGK------DLSD 222
EP E + L GH + + W Y SAS DH++ WD+ D +
Sbjct: 168 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 227
Query: 223 IFCGKALNCIDIGGE--GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKW 280
IF G D+ +L + D L IWD R TS P +H + ++ +
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 281 HNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCADWWRGDSVI--SGGVDSK 337
+ S F L + S D V LWDLR L +SHKD++ W + I S G D +
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 347
Query: 338 LCV 340
L V
Sbjct: 348 LHV 350
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 27/195 (13%)
Query: 115 LRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ 173
LRGH+ + ++ + N + S S D TI LW N + + K
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK------------ 226
Query: 174 LEGEAISTLVGHTQCVSSVVWPQ-QETIY-SASWDHSVRTWDVEMGKDLSDIFCGKA--- 228
+ GHT V V W E+++ S + D + WD A
Sbjct: 227 ------NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 280
Query: 229 -LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFH 287
+NC+ ++A G +D + +WD R + F SH I +W +
Sbjct: 281 EVNCLSFNPYSEFILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNETI 338
Query: 288 LISASYDGKVMLWDL 302
L S+ D ++ +WDL
Sbjct: 339 LASSGTDRRLHVWDL 353
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 89/240 (37%), Gaps = 48/240 (20%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSF---KILRGHKASVHSIA-AETSGNMVCSGS 138
+ +AS D T+ LW +A PK+ R I GH A V +A ++ S +
Sbjct: 199 LLSASDDHTICLWDINAT-----PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 253
Query: 139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ 197
D + +W T NN +P T+ HT V+ + + P
Sbjct: 254 DDQKLMIWDTR----------------NNNTSKPS------HTVDAHTAEVNCLSFNPYS 291
Query: 198 ETIY-SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI--GGEGSALIAAGGSDPILRIW 254
E I + S D +V WD+ K F + ++A+ G+D L +W
Sbjct: 292 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Query: 255 DPRKPGTSAP-----------VFQFSSHNSWISACKWH-NKSWFHLISASYDGKVMLWDL 302
D K G +F H + IS W+ N+ W + S S D + +W +
Sbjct: 352 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI-ICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Query: 171 EPQLEGEAISTLVGHTQCVSSVVWPQQETIY--SASWDHSVRTWDVEMGK------DLSD 222
EP E + L GH + + W Y SAS DH++ WD+ D +
Sbjct: 166 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225
Query: 223 IFCGKALNCIDIGGE--GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKW 280
IF G D+ +L + D L IWD R TS P +H + ++ +
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 281 HNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCADWWRGDSVI--SGGVDSK 337
+ S F L + S D V LWDLR L +SHKD++ W + I S G D +
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 338 LCV 340
L V
Sbjct: 346 LHV 348
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 27/195 (13%)
Query: 115 LRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ 173
LRGH+ + ++ + N + S S D TI LW N + + K
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK------------ 224
Query: 174 LEGEAISTLVGHTQCVSSVVWPQ-QETIY-SASWDHSVRTWDVEMGKDLSDIFCGKA--- 228
+ GHT V V W E+++ S + D + WD A
Sbjct: 225 ------NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278
Query: 229 -LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFH 287
+NC+ ++A G +D + +WD R + F SH I +W +
Sbjct: 279 EVNCLSFNPYSEFILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNETI 336
Query: 288 LISASYDGKVMLWDL 302
L S+ D ++ +WDL
Sbjct: 337 LASSGTDRRLHVWDL 351
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 89/240 (37%), Gaps = 48/240 (20%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSF---KILRGHKASVHSIA-AETSGNMVCSGS 138
+ +AS D T+ LW +A PK+ R I GH A V +A ++ S +
Sbjct: 197 LLSASDDHTICLWDINAT-----PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 251
Query: 139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ 197
D + +W T NN +P T+ HT V+ + + P
Sbjct: 252 DDQKLMIWDTR----------------NNNTSKPS------HTVDAHTAEVNCLSFNPYS 289
Query: 198 ETIY-SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI--GGEGSALIAAGGSDPILRIW 254
E I + S D +V WD+ K F + ++A+ G+D L +W
Sbjct: 290 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Query: 255 DPRKPGTSAP-----------VFQFSSHNSWISACKWH-NKSWFHLISASYDGKVMLWDL 302
D K G +F H + IS W+ N+ W + S S D + +W +
Sbjct: 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI-ICSVSEDNIMQVWQM 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Query: 171 EPQLEGEAISTLVGHTQCVSSVVWPQQETIY--SASWDHSVRTWDVEMGK------DLSD 222
EP E + L GH + + W Y SAS DH++ WD+ D +
Sbjct: 170 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229
Query: 223 IFCGKALNCIDIGGE--GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKW 280
IF G D+ +L + D L IWD R TS P +H + ++ +
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 281 HNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCADWWRGDSVI--SGGVDSK 337
+ S F L + S D V LWDLR L +SHKD++ W + I S G D +
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 338 LCV 340
L V
Sbjct: 350 LHV 352
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 27/195 (13%)
Query: 115 LRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ 173
LRGH+ + ++ + N + S S D TI LW N + + K
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK------------ 228
Query: 174 LEGEAISTLVGHTQCVSSVVWPQ-QETIY-SASWDHSVRTWDVEMGKDLSDIFCGKA--- 228
+ GHT V V W E+++ S + D + WD A
Sbjct: 229 ------NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 282
Query: 229 -LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFH 287
+NC+ ++A G +D + +WD R + F SH I +W +
Sbjct: 283 EVNCLSFNPYSEFILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNETI 340
Query: 288 LISASYDGKVMLWDL 302
L S+ D ++ +WDL
Sbjct: 341 LASSGTDRRLHVWDL 355
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 89/240 (37%), Gaps = 48/240 (20%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSF---KILRGHKASVHSIA-AETSGNMVCSGS 138
+ +AS D T+ LW +A PK+ R I GH A V +A ++ S +
Sbjct: 201 LLSASDDHTICLWDINAT-----PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 255
Query: 139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ 197
D + +W T NN +P T+ HT V+ + + P
Sbjct: 256 DDQKLMIWDTR----------------NNNTSKPS------HTVDAHTAEVNCLSFNPYS 293
Query: 198 ETIY-SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI--GGEGSALIAAGGSDPILRIW 254
E I + S D +V WD+ K F + ++A+ G+D L +W
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 255 DPRKPGTSAP-----------VFQFSSHNSWISACKWH-NKSWFHLISASYDGKVMLWDL 302
D K G +F H + IS W+ N+ W + S S D + +W +
Sbjct: 354 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI-ICSVSEDNIMQVWQM 412
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR 116
+H ++ H + VN + + +AT S D+T+ LW +L N K+ SF+
Sbjct: 274 SHTVDAH---TAEVNCLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFE--- 322
Query: 117 GHKASVHSIA-AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE 175
HK + + + + ++ S D + +W + + G Q E +
Sbjct: 323 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-------------KIGEEQSTEDAED 369
Query: 176 G--EAISTLVGHTQCVSSVVWPQQET--IYSASWDHSVRTWDV 214
G E + GHT +S W E I S S D+ ++ W +
Sbjct: 370 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A +S D+ +++W +D + K + GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEW----LAASSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ GK L + ++ +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + ++S D ++ W GK G L D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 80 SNLLVSASDDKTLKIWDVS---SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 209
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 210 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 259 SEDNLVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 293
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 294 ENIIASAALENDKTIKLW 311
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 200 IYSASWDHSVRTWDVEMGK------DLSDIFCGKALNCIDIGGE--GSALIAAGGSDPIL 251
+ SAS DH+V WD+ G D IF G + D+ +L + D L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSV 310
IWD R TS P +H + ++ ++ S F L + S D V LWDLR L
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 311 IDSHKDKVLCADWWRGDSVI--SGGVDSKLCV 340
+SHKD++ W + I S G D +L V
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNV 346
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 31/197 (15%)
Query: 115 LRGHKASVHSIA--AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP 172
LRGH+ + ++ + SG+++ S S D T+ LW N G V K
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAK----------- 222
Query: 173 QLEGEAISTLVGHTQCVSSVVWPQ-QETIY-SASWDHSVRTWDVEMG-----KDLSDIFC 225
+ GH+ V V W E+++ S + D + WD L D
Sbjct: 223 -------AIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHT 275
Query: 226 GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSW 285
+ +NC+ ++A G +D + +WD R + F SH I W +
Sbjct: 276 AE-VNCLSFNPYSEFILATGSADKTVALWDLR--NLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 286 FHLISASYDGKVMLWDL 302
L S+ D ++ +WDL
Sbjct: 333 TILASSGTDRRLNVWDL 349
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 29/163 (17%)
Query: 57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR 116
+H+++ H + VN + + +AT S D+T+ LW +L N K+ +F+ +
Sbjct: 268 SHLVDAH---TAEVNCLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHTFESHK 319
Query: 117 GHKASVH-SIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE 175
VH S ET ++ S D +++W + + G Q E +
Sbjct: 320 DEIFQVHWSPHNET---ILASSGTDRRLNVWDLS-------------KIGEEQSAEDAED 363
Query: 176 G--EAISTLVGHTQCVSSVVWPQQE--TIYSASWDHSVRTWDV 214
G E + GHT +S W E I S S D+ ++ W +
Sbjct: 364 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 114/296 (38%), Gaps = 67/296 (22%)
Query: 58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRG 117
+ L GH V+ V + + +AS+D T+++W ++ + + L+G
Sbjct: 102 YALSGHRSPVTRVIFHPV----FSVMVSASEDATIKVWDYETGDFE---------RTLKG 148
Query: 118 HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE 177
H SV I+ + SG ++ S S D TI LW D G E
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLW-----DFQG--------------------FE 183
Query: 178 AISTLVGHTQCVSSV-VWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGG 236
I T+ GH VSSV + P + I SAS D +++ W+V+ G + + +
Sbjct: 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF---------- 286
+ LIA+ +D +R+W T + H + W +S +
Sbjct: 244 QDGTLIASCSNDQTVRVW---VVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 287 ---------HLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGG 333
L+S S D + +WD+ T L + H +W RG SGG
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD------NWVRGVLFHSGG 350
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 34 NPG-FILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT 91
PG F+L+G D ++W + G+C L GH V V + G K++ + + D+T
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV--LFHSGGKFI--LSCADDKT 361
Query: 92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW 146
LR+W + K R K L H+ V S+ + V +GS D T+ +W
Sbjct: 362 LRVWDY---------KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
HD+WV V + G FIL+ D RVW C L H V+S++ K+
Sbjct: 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY-- 394
Query: 81 VTVATASKDQTLRLWK 96
V T S DQT+++W+
Sbjct: 395 --VVTGSVDQTVKVWE 408
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 200 IYSASWDHSVRTWDVEMGK------DLSDIFCGKALNCIDIGGE--GSALIAAGGSDPIL 251
+ SAS DH+V WD+ G D IF G + D+ +L + D L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSV 310
IWD R TS P +H + ++ ++ S F L + S D V LWDLR L
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 311 IDSHKDKVLCADWWRGDSVI--SGGVDSKLCV 340
+SHKD++ W + I S G D +L V
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNV 346
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 31/197 (15%)
Query: 115 LRGHKASVHSIA--AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP 172
LRGH+ + ++ + SG+++ S S D T+ LW N G V K
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAK----------- 222
Query: 173 QLEGEAISTLVGHTQCVSSVVWPQ-QETIY-SASWDHSVRTWDVEMG-----KDLSDIFC 225
+ GH+ V V W E+++ S + D + WD L D
Sbjct: 223 -------AIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT 275
Query: 226 GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSW 285
+ +NC+ ++A G +D + +WD R + F SH I W +
Sbjct: 276 AE-VNCLSFNPYSEFILATGSADKTVALWDLR--NLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 286 FHLISASYDGKVMLWDL 302
L S+ D ++ +WDL
Sbjct: 333 TILASSGTDRRLNVWDL 349
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ G L + ++ +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 80 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 209
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D TL+LW + K + K GHK + I A T G + SG
Sbjct: 210 ILAATL--DNTLKLWDYS---------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 259 SEDNMVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 293
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 294 ENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 46/264 (17%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
L GH AVSSV + +A++S D+ +++W +D + K + GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
K + +A + N++ S S D T+ +W + G+
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
+ TL GH+ V + PQ I S S+D SVR WDV+ G L + ++ +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+GS LI + D + RIWD + N +S K+ + +++A+ D
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDND 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
+ LWD L HK++ C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
TL GHT+ VSSV + P E + S+S D ++ W GK G L D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
S L+ + D L+IWD + + H++++ C ++ +S ++S S+D V
Sbjct: 80 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+WD++T L + +H D V + R S+I LC
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 77/198 (38%), Gaps = 45/198 (22%)
Query: 23 HDDWVSAVDGSNPG-FILTGCYDNLGRVW-KAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
H D VSAV + G I++ YD L R+W A G C L S +G KY
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KY 209
Query: 81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE---TSGNMVCSG 137
+ AT D L+LW + K + K GHK + I A T G + SG
Sbjct: 210 ILAATL--DNDLKLWDY---------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV-SSVVWPQ 196
S D + +W N Q + E + L GHT V S+ P
Sbjct: 259 SEDNMVYIW-------------------NLQTK------EIVQKLQGHTDVVISTACHPT 293
Query: 197 QETIYSASW--DHSVRTW 212
+ I SA+ D +++ W
Sbjct: 294 ENIIASAALENDKTIKLW 311
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 123/304 (40%), Gaps = 67/304 (22%)
Query: 23 HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
H+ WV+ A P +L+ D WK G V +GH V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT- 74
Query: 75 SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
+DG ++ AS D+TLRLW E +++ GHK+ V S+ + + +
Sbjct: 75 ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVXSVDIDKKASXI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
SGS D TI +W ++G+ ++TL+GH VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
P ++ TI SA D V+ W++ + +D F G +N + +G+ LIA+
Sbjct: 157 VPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
G D + +W+ + S+ + S N+ W +A S D + ++
Sbjct: 215 GKDGEIXLWN---LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
DLR
Sbjct: 272 DDLR 275
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 241 LIAAGGSDPILRIW----DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
L+ + D L W D +K G PV F H+ + C + L SAS+D
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGV--PVRSFKGHSHIVQDCTLTADGAYAL-SASWDKT 88
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLCADW-WRGDSVISGGVDSKLCV 340
+ LWD+ T HK V D + +ISG D + V
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 200 IYSASWDHSVRTWDV----EMGK--DLSDIFCGKALNCIDIGGE--GSALIAAGGSDPIL 251
+ SAS DH++ WD+ + GK D IF G D+ +L + D L
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSV 310
IWD R TS P +H + ++ ++ S F L + S D V LWDLR L
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 311 IDSHKDKVLCADWWRGDSVI--SGGVDSKLCV 340
+SHKD++ W + I S G D +L V
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNV 344
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 29/196 (14%)
Query: 115 LRGHKASVHSIA--AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP 172
LRGH+ + ++ SG+++ S S D TI LW + G V K
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAK----------- 220
Query: 173 QLEGEAISTLVGHTQCVSSVVWPQ-QETIY-SASWDHSVRTWDVEMGKDLSDIFCGKA-- 228
+ GHT V V W E+++ S + D + WD A
Sbjct: 221 -------TIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
Query: 229 --LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF 286
+NC+ ++A G +D + +WD R + F SH I +W +
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNET 331
Query: 287 HLISASYDGKVMLWDL 302
L S+ D ++ +WDL
Sbjct: 332 ILASSGTDRRLNVWDL 347
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 29/163 (17%)
Query: 57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR 116
+H ++ H + VN + + +AT S D+T+ LW +L N K+ SF+
Sbjct: 266 SHSVDAHT---AEVNCLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFE--- 314
Query: 117 GHKASVHSIA-AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE 175
HK + + + + ++ S D +++W + + G Q E +
Sbjct: 315 SHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS-------------KIGEEQSPEDAED 361
Query: 176 G--EAISTLVGHTQCVSSVVWPQQE--TIYSASWDHSVRTWDV 214
G E + GHT +S W E I S S D+ ++ W +
Sbjct: 362 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 105/248 (42%), Gaps = 32/248 (12%)
Query: 60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
L GH G V+S+ ++ V+T S+D+TL W + + + + L GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVST-SRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDA-------AGNQVSIKKRKGNNQVEEP 172
A V +A +GN S SWD ++ LW + + +S+ N Q+
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 173 ---------QLEGEAISTLV--GHTQCVSSVVWP---QQETIYSASWDHSVRTWDVEMGK 218
++GE + TL HT VS V + I S WD+ V+ WD+ G+
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 219 DLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRK------PGTSAPVFQ--FS 269
++D+ + + + +GS L A+ D + R+WD K AP+ Q FS
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGS-LCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFS 246
Query: 270 SHNSWISA 277
+ W+ A
Sbjct: 247 PNRYWMCA 254
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 76/199 (38%), Gaps = 42/199 (21%)
Query: 23 HDDWVSAVDGS---NPGFILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGL 78
H DWVS V S + I++G +DNL +VW A G L+GH V+SV + L
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 79 KYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC--- 135
A++ KD RLW E ++ +AA N +C
Sbjct: 211 ----CASSDKDGVARLWDLTKGE-------------------ALSEMAAGAPINQICFSP 247
Query: 136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP 195
+ W C A + I + + + E E + +V +CVS
Sbjct: 248 NRYWMCA----------ATEKGIRIFDLENKDIIVELAPEHQGSKKIV--PECVSIAWSA 295
Query: 196 QQETIYSASWDHSVRTWDV 214
T+YS D+ +R W V
Sbjct: 296 DGSTLYSGYTDNVIRVWGV 314
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 38 ILTGCYDNLGRVWKAGGVCTHILE--GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW 95
I++G DN RVW G C H L H VS V S L + + D +++W
Sbjct: 124 IVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF--SPSLDAPVIVSGGWDNLVKVW 181
Query: 96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDA 153
LV L+GH V S+ G++ S D LW +A
Sbjct: 182 DLATGRLVTD---------LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEA 230
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 113/294 (38%), Gaps = 59/294 (20%)
Query: 36 GFILTGCYDNLGRVWKAGG---VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL 92
++ + +D +WK C LEGH V SV S L +AT S+D+++
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL----LATCSRDKSV 129
Query: 93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSD 152
+W+ D E+ + +L H V + S ++ S S+D T+ L+R + D
Sbjct: 130 WVWEVDEED------EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183
Query: 153 AAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRT 211
+TL GH V S+ + P + + S S D +VR
Sbjct: 184 WV-----------------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220
Query: 212 WDVEMGKDLSDIFCG---KALNCI------------DIG-GEGSALIAAGGSDPILRIW- 254
W + + + C + CI DI + + +A D +R++
Sbjct: 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280
Query: 255 -----DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR 303
DP++P S +H+ ++ W+ K L S S DG+V W +
Sbjct: 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 92/228 (40%), Gaps = 45/228 (19%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+A+ D+ +R+W + + + K + S GH+ +V +A GN + S S+D T
Sbjct: 31 LASCGGDRRIRIWGTEGDSWIC--KSVLS----EGHQRTVRKVAWSPCGNYLASASFDAT 84
Query: 143 ISLWRTNDSD--------------------AAGNQVSIKKRKGNNQVEE--PQLEGEAIS 180
+W+ N D +GN ++ R + V E + E E +S
Sbjct: 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS 144
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALN--------- 230
L HTQ V VVW P QE + SAS+D +V+ + E D C L
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE----DDWVCCATLEGHESTVWSL 200
Query: 231 CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISAC 278
D G+ +A+ D +RIW PG V S SW C
Sbjct: 201 AFDPSGQ---RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 66/271 (24%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+AT ++D+ +R+W + ++V IL+GH+ ++S+ SG+ + SGS D T
Sbjct: 138 LATGAEDRLIRIWDIENRKIV---------MILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIY 201
+ +W D Q S+ TL + V P + I
Sbjct: 189 VRIW-----DLRTGQCSL--------------------TLSIEDGVTTVAVSPGDGKYIA 223
Query: 202 SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG-------------SALIAAGGSD 248
+ S D +VR WD E G F + L+ + G G + +G D
Sbjct: 224 AGSLDRAVRVWDSETG------FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 249 PILRIW---------DPRKPGTSAPVFQFSSHNSWI-SACKWHNKSWFHLISASYDGKVM 298
+++W D + P + + H ++ S N + ++S S D V+
Sbjct: 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY--ILSGSKDRGVL 335
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSV 329
WD ++ PL ++ H++ V+ G S+
Sbjct: 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 95/230 (41%), Gaps = 29/230 (12%)
Query: 38 ILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK 96
+++G D R+W G C+ L G V++V + DG KY+ A S D+ +R+W
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDG-KYI--AAGSLDRAVRVWD 235
Query: 97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN 156
+ LV GHK SV+S+ G V SGS D ++ LW N +A
Sbjct: 236 SETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLW--NLQNANNK 291
Query: 157 QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ-ETIYSASWDHSVRTWDVE 215
S G +V T +GH V SV Q E I S S D V WD +
Sbjct: 292 SDSKTPNSGTCEV-----------TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340
Query: 216 MGKDLSDIFCGKALNCIDIG-GEGSAL------IAAGGSDPILRIWDPRK 258
G L + G + I + GS+L A G D RIW +K
Sbjct: 341 SGNPLL-MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 35/191 (18%)
Query: 122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
+ S+ G + +G+ D I +W I+ RK +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIW------------DIENRK-------------IVMI 160
Query: 182 LVGHTQCVSSV-VWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
L GH Q + S+ +P + + S S D +VR WD+ G+ + + + +
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACK------WHNKSWFHLISASYD 294
IAAG D +R+WD T V + S N + K + ++S S D
Sbjct: 221 YIAAGSLDRAVRVWDSE---TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 295 GKVMLWDLRTA 305
V LW+L+ A
Sbjct: 278 RSVKLWNLQNA 288
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILR 252
P + + + + D +R WD+E K + I G + + +D G L++ G D +R
Sbjct: 133 PDGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSG-DRTVR 190
Query: 253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID 312
IWD R G + + ++ K ++ + S D V +WD T + + +D
Sbjct: 191 IWDLRT-GQCSLTLSIEDGVTTVAVSPGDGK---YIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 313 S-------HKDKVLCADWWR-GDSVISGGVD 335
S HKD V + R G SV+SG +D
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 45/251 (17%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+ +AS+D+++ LWK ++ + R L GH V + + G SGSWD
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRR----LTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 143 ISLWRTNDSDAAG-----------NQVSIKKRKGNNQVEEPQLE---------GEAISTL 182
+ LW AAG + +S+ N Q+ + GE T+
Sbjct: 454 LRLWDL----AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI 509
Query: 183 V----GHTQCVSSVVWPQ---QETIYSASWDHSVRTWDVEMGKDLSDIFCGKA--LNCID 233
GH VS V + Q TI SASWD +V+ W++ K L G ++ +
Sbjct: 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVA 568
Query: 234 IGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY 293
+ +GS L A+GG D ++ +WD + ++ +++ + C N+ W + A+
Sbjct: 569 VSPDGS-LCASGGKDGVVLLWDLAE---GKKLYSLEANSVIHALCFSPNRYW---LCAAT 621
Query: 294 DGKVMLWDLRT 304
+ + +WDL +
Sbjct: 622 EHGIKIWDLES 632
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 96/245 (39%), Gaps = 70/245 (28%)
Query: 38 ILTGCYDNLGRVWKAGGVCTHIL----EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR 93
I++ D ++W G C + + EGH VS V S T+ +AS D+T++
Sbjct: 487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF--SPNTLQPTIVSASWDKTVK 544
Query: 94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDA 153
+W K+RS L GH V ++A G++ SG D + LW D
Sbjct: 545 VWNLSN-------CKLRS--TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW-----DL 590
Query: 154 AGNQVSIKKRKGNNQVEEPQLEGEAISTL----VGHTQCVSSVVWPQQETIYSASWDHSV 209
A EG+ + +L V H C S P + + +A+ +H +
Sbjct: 591 A--------------------EGKKLYSLEANSVIHALCFS----PNRYWLCAAT-EHGI 625
Query: 210 RTWDVEMGKDLSDIFCG------------------KALNCIDIG--GEGSALIAAGGSDP 249
+ WD+E + D+ K + C + +GS L +G +D
Sbjct: 626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF-SGYTDG 684
Query: 250 ILRIW 254
++R+W
Sbjct: 685 VIRVW 689
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 106/272 (38%), Gaps = 44/272 (16%)
Query: 55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI 114
VC L+GH G V S++ + +AS+D L +W + K + K+
Sbjct: 57 VCCRTLQGHSGKVYSLDWTPEKNW----IVSASQDGRLIVWNALTSQ------KTHAIKL 106
Query: 115 LRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL 174
H V A +G V G D S++ N S R GN V
Sbjct: 107 ---HCPWVMECAFAPNGQSVACGGLDSACSIF---------NLSSQADRDGNMPVSR--- 151
Query: 175 EGEAISTLVGHTQCVSSVVW-PQQET-IYSASWDHSVRTWDVEMGKDLSDIFCGKA---- 228
L GH SS + P QET + + S D + WDV G+ +S IF +
Sbjct: 152 ------VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS-IFGSEFPSGH 204
Query: 229 ---LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSW 285
+ + I + + +G D +R+WD R TS V + H I++ K+
Sbjct: 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRI--TSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 286 FHLISASYDGKVMLWDLRTAWPLSVIDSHKDK 317
+ S DG L+D+RT L V + D+
Sbjct: 263 -RFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 9/159 (5%)
Query: 162 KRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDL 220
K +G V + TL GH+ V S+ W P++ I SAS D + W+ +
Sbjct: 42 KAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT 101
Query: 221 SDI--FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT---SAPVFQ-FSSHNSW 274
I C + C G + +A GG D I++ + PV + + H +
Sbjct: 102 HAIKLHCPWVMECA-FAPNGQS-VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY 159
Query: 275 ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS 313
S+C++ LI+ S D +LWD+ T +S+ S
Sbjct: 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 283 KSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CADWWRGDSVISGGVDS 336
K+W ++SAS DG++++W+ T+ I H V+ CA G SV GG+DS
Sbjct: 78 KNW--IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDS 130
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 120/309 (38%), Gaps = 59/309 (19%)
Query: 23 HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAG------GVCTHILEGHCGAVSSVNIIK 74
H+ WV+ A P IL+ D +WK G+ L GH VS V +I
Sbjct: 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV-VIS 95
Query: 75 SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
SDG ++ S D TLRLW R F GH V S+A + +
Sbjct: 96 SDGQFALS---GSWDGTLRLWDLTTGTTT------RRFV---GHTKDVLSVAFSSDNRQI 143
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW 194
SGS D TI LW N + + K ++ H++ VS V +
Sbjct: 144 VSGSRDKTIKLW---------NTLGVCKYTVQDE---------------SHSEWVSCVRF 179
Query: 195 PQQET---IYSASWDHSVRTWDVEMGK-DLSDIFCGKALNCIDIGGEGSALIAAGGSDPI 250
+ I S WD V+ W++ K + I LN + + +GS L A+GG D
Sbjct: 180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQ 238
Query: 251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV 310
+WD + ++ + + C N+ W + A+ + +WDL +
Sbjct: 239 AMLWDLNE---GKHLYTLDGGDIINALCFSPNRYW---LCAATGPSIKIWDLEGK---II 289
Query: 311 IDSHKDKVL 319
+D K +V+
Sbjct: 290 VDELKQEVI 298
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 29/193 (15%)
Query: 115 LRGHKASVHSIAAETS-GNMVCSGSWDCTISLWR-TNDSDAAGNQVSIKKRKGNNQVEEP 172
L+GH V IA +M+ S S D TI +W+ T D G I +R
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG----IPQR--------- 80
Query: 173 QLEGEAISTLVGHTQCVSSVVWPQQ-ETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNC 231
L GH+ VS VV + S SWD ++R WD+ G + F G +
Sbjct: 81 --------ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-TRRFVGHTKDV 131
Query: 232 IDIG-GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWH-NKSWFHLI 289
+ + + I +G D +++W+ G Q SH+ W+S ++ N S ++
Sbjct: 132 LSVAFSSDNRQIVSGSRDKTIKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 290 SASYDGKVMLWDL 302
S +D V +W+L
Sbjct: 190 SCGWDKLVKVWNL 202
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 40/221 (18%)
Query: 25 DWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL--EGHCGAVSSVNIIKSDGLKYVT 82
D +S S+ I++G D ++W GVC + + E H VS V S
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF--SPNSSNPI 187
Query: 83 VATASKDQTLRLWKFDAEEL-VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC 141
+ + D+ +++W +L NH GH ++++ G++ SG D
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHI----------GHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 142 TISLWRTNDSD-------------------------AAGNQVSIKKRKGNNQVEEPQLEG 176
LW N+ A G + I +G V+E + E
Sbjct: 238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 177 EAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMG 217
+ S+ QC S +T+++ D+ VR W V +G
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 120/309 (38%), Gaps = 59/309 (19%)
Query: 23 HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAG------GVCTHILEGHCGAVSSVNIIK 74
H+ WV+ A P IL+ D +WK G+ L GH VS V +I
Sbjct: 14 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV-VIS 72
Query: 75 SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
SDG ++ S D TLRLW R F GH V S+A + +
Sbjct: 73 SDGQFALS---GSWDGTLRLWDLTTGTTT------RRFV---GHTKDVLSVAFSSDNRQI 120
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW 194
SGS D TI LW N + + K ++ H++ VS V +
Sbjct: 121 VSGSRDKTIKLW---------NTLGVCKYTVQDE---------------SHSEWVSCVRF 156
Query: 195 PQQET---IYSASWDHSVRTWDVEMGK-DLSDIFCGKALNCIDIGGEGSALIAAGGSDPI 250
+ I S WD V+ W++ K + I LN + + +GS L A+GG D
Sbjct: 157 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQ 215
Query: 251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV 310
+WD + ++ + + C N+ W + A+ + +WDL +
Sbjct: 216 AMLWDLNE---GKHLYTLDGGDIINALCFSPNRYW---LCAATGPSIKIWDLEGK---II 266
Query: 311 IDSHKDKVL 319
+D K +V+
Sbjct: 267 VDELKQEVI 275
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 27/192 (14%)
Query: 115 LRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ 173
L+GH V IA +M+ S S D TI +W+ + + + N + +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK------------LTRDETNYGIPQRA 58
Query: 174 LEGEAISTLVGHTQCVSSVVWPQQ-ETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCI 232
L G H+ VS VV + S SWD ++R WD+ G + F G + +
Sbjct: 59 LRG--------HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-TRRFVGHTKDVL 109
Query: 233 DIG-GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWH-NKSWFHLIS 290
+ + I +G D +++W+ G Q SH+ W+S ++ N S ++S
Sbjct: 110 SVAFSSDNRQIVSGSRDKTIKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 291 ASYDGKVMLWDL 302
+D V +W+L
Sbjct: 168 CGWDKLVKVWNL 179
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 40/221 (18%)
Query: 25 DWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL--EGHCGAVSSVNIIKSDGLKYVT 82
D +S S+ I++G D ++W GVC + + E H VS V S
Sbjct: 107 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF--SPNSSNPI 164
Query: 83 VATASKDQTLRLWKFDAEEL-VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC 141
+ + D+ +++W +L NH GH ++++ G++ SG D
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHI----------GHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 142 TISLWRTNDSD-------------------------AAGNQVSIKKRKGNNQVEEPQLEG 176
LW N+ A G + I +G V+E + E
Sbjct: 215 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 177 EAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMG 217
+ S+ QC S +T+++ D+ VR W V +G
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 181 TLVGHTQCVSSVVWPQ-QETIYSASWDHSVRTWD--VEMGKDLSDIFCGKALNCIDIGGE 237
TL GH V + W + + I S+S D V WD + + C + C
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA-YAPS 117
Query: 238 GSALIAAGGSDPILRIWD---PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD 294
G A IA GG D ++ + +A + H +++SAC + N S +++AS D
Sbjct: 118 GCA-IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGD 175
Query: 295 GKVMLWDLRTAWPLSVIDSHKDKVLCADWW---RGDSVISGGVDSKLCV 340
G LWD+ + L H VLC D G++ +SGG D K V
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 37 FILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW 95
F+ GC D VW G C E H V+SV S A+ S D T RL+
Sbjct: 213 FVSGGC-DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD----AFASGSDDATCRLY 267
Query: 96 KFDAE-ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAA 154
A+ E+ + K+ I+ G S+ SG ++ +G D TI++W
Sbjct: 268 DLRADREVAIYSKE----SIIFG----ASSVDFSLSGRLLFAGYNDYTINVWDV------ 313
Query: 155 GNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-VWPQQETIYSASWDHSVRTW 212
L+G +S L GH VS++ V P S SWDH++R W
Sbjct: 314 -------------------LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 47/211 (22%)
Query: 63 HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV 122
H +S+ + SD + + TAS D T LW ++ +L ++SF GH A V
Sbjct: 153 HTNYLSACSFTNSD----MQILTASGDGTCALWDVESGQL------LQSF---HGHGADV 199
Query: 123 --HSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
+A +GN SG D +W G+ +
Sbjct: 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMR-------------------------SGQCVQ 234
Query: 181 TLVGHTQCVSSV-VWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKAL----NCIDIG 235
H V+SV +P + S S D + R +D+ ++++ I+ +++ + +D
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-IYSKESIIFGASSVDFS 293
Query: 236 GEGSALIAAGGSDPILRIWDPRKPGTSAPVF 266
G L+ AG +D + +WD K + +F
Sbjct: 294 LSGR-LLFAGYNDYTINVWDVLKGSRVSILF 323
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 288 LISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
+S D K M+WD+R+ + ++H+ V ++ + G D C
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 62/238 (26%)
Query: 67 VSSVNIIKSDGLKYVTV----------ATASKDQTLRLW--KFDAEELVNHPKKIRSFKI 114
++S+N+IKS L + AT S D+ ++L K+D L++ +
Sbjct: 1 MASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDET----- 55
Query: 115 LRGHKASVHSIAAETSGNMVCSGSWDCTISLW-------RTNDSDA----AGNQVSIKKR 163
HK ++ S+A +++ +GS+D T+S+W RT + D G++ +K
Sbjct: 56 --AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 164 KGNN-----------------QVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASW 205
+N + +E E E IS L H+Q V V+W P + + S+S+
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173
Query: 206 DHSVRTWDVEMGKDLSDIF-CGKALNCID--------IGGEGSALIAAGGSDPILRIW 254
D +VR W KD D + C LN + EG + +G D +R+W
Sbjct: 174 DDTVRIW-----KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 45/254 (17%)
Query: 23 HDDWVSAVDGSNPGFILTGC-YDNLGRVWKAGGV-----CTHILEGHCGAVSSVNIIKSD 76
H++ V V SN G+ L C D +W+ C +L+ H V V S+
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165
Query: 77 GLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM--V 134
L +A++S D T+R+WK ++ +L GH+ +V S + + + +
Sbjct: 166 AL----LASSSYDDTVRIWK-------DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW 194
CSGS D T+ +W K G+++ ++ + EAI V H + V +V W
Sbjct: 215 CSGSDDSTVRVW---------------KYMGDDEDDQQEWVCEAILPDV-HKRQVYNVAW 258
Query: 195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKAL-------NCID-IGGEGSALIAAGG 246
I S D + ++ G+ +F +AL N + + G ++A GG
Sbjct: 259 GFNGLIASVGADGVLAVYEEVDGE--WKVFAKRALCHGVYEINVVKWLELNGKTILATGG 316
Query: 247 SDPILRIWDPRKPG 260
D I+ W K
Sbjct: 317 DDGIVNFWSLEKAA 330
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 110 RSFKILRGHKASVHSIA-AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ 168
++ ++ GH A V IA + N++ SGS DCT+ +W D G + ++
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPD---GGLVLPLR------- 121
Query: 169 VEEPQLEGEAISTLVGHTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGK---DLSDI 223
E + TL GHT+ V V W Q + SA D+ + WDV G L
Sbjct: 122 --------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPD 173
Query: 224 FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK 258
+ +D +G ALI D +R+ +PRK
Sbjct: 174 VHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRK 207
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGT----SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
+IA+G D + +W+ G PV H + WH + L+SA D
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 297 VMLWDLRTAWPLSVI--DSHKDKVLCADWWRGDSVI 330
+++WD+ T + + D H D + DW R ++I
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
L+A GS I+RI +P T + + H + I+ K+H + L+S S D + LW
Sbjct: 123 LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 179
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
+++T +++ ++ H+D+VL AD+ G+ ++S G+D L
Sbjct: 180 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 221
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 13/211 (6%)
Query: 5 EIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHC 64
EI +++ +E W + S+P + G + G + + ++ +
Sbjct: 92 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG---SRGIIRIINPITMQCIKHYV 148
Query: 65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHS 124
G +++N +K + + SKD LRLW + LV F + GH+ V S
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV------AIFGGVEGHRDEVLS 202
Query: 125 IAAETSGNMVCSGSWDCTISLWRTNDS---DAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
+ G + S D ++ LWR N +A K N ++ ST
Sbjct: 203 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 262
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTW 212
H V V W + I S S ++++ W
Sbjct: 263 RDIHRNYVDCVRW-LGDLILSKSCENAIVCW 292
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
L+A GS I+RI +P T + + H + I+ K+H + L+S S D + LW
Sbjct: 87 LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
+++T +++ ++ H+D+VL AD+ G+ ++S G+D L
Sbjct: 144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 185
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 13/211 (6%)
Query: 5 EIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHC 64
EI +++ +E W + S+P + G + G + + ++ +
Sbjct: 56 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG---SRGIIRIINPITMQCIKHYV 112
Query: 65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHS 124
G +++N +K + + SKD LRLW + LV F + GH+ V S
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV------AIFGGVEGHRDEVLS 166
Query: 125 IAAETSGNMVCSGSWDCTISLWRTNDS---DAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
+ G + S D ++ LWR N +A K N ++ ST
Sbjct: 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTW 212
H V V W + I S S ++++ W
Sbjct: 227 RDIHRNYVDCVRW-LGDLILSKSCENAIVCW 256
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
L+A GS I+RI +P T + + H + I+ K+H + L+S S D + LW
Sbjct: 82 LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 138
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
+++T +++ ++ H+D+VL AD+ G+ ++S G+D L
Sbjct: 139 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 180
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 13/211 (6%)
Query: 5 EIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHC 64
EI +++ +E W + S+P + G + G + + ++ +
Sbjct: 51 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG---SRGIIRIINPITMQCIKHYV 107
Query: 65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHS 124
G +++N +K + + SKD LRLW + LV F + GH+ V S
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV------AIFGGVEGHRDEVLS 161
Query: 125 IAAETSGNMVCSGSWDCTISLWRTNDS---DAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
+ G + S D ++ LWR N +A K N ++ ST
Sbjct: 162 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 221
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTW 212
H V V W + I S S ++++ W
Sbjct: 222 RDIHRNYVDCVRW-LGDLILSKSCENAIVCW 251
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
L+A GS I+RI +P T + + H + I+ K+H + L+S S D + LW
Sbjct: 86 LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
+++T +++ ++ H+D+VL AD+ G+ ++S G+D L
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 184
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 13/211 (6%)
Query: 5 EIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHC 64
EI +++ +E W + S+P + G + G + + ++ +
Sbjct: 55 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG---SRGIIRIINPITMQCIKHYV 111
Query: 65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHS 124
G +++N +K + + SKD LRLW + LV F + GH+ V S
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV------AIFGGVEGHRDEVLS 165
Query: 125 IAAETSGNMVCSGSWDCTISLWRTNDS---DAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
+ G + S D ++ LWR N +A K N ++ ST
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 225
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTW 212
H V V W + I S S ++++ W
Sbjct: 226 RDIHRNYVDCVRW-LGDLILSKSCENAIVCW 255
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
L+A GS I+RI +P T + + H + I+ K+H + L+S S D + LW
Sbjct: 86 LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
+++T +++ ++ H+D+VL AD+ G+ ++S G+D L
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 184
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 13/211 (6%)
Query: 5 EIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHC 64
EI +++ +E W + S+P + G + G + + ++ +
Sbjct: 55 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG---SRGIIRIINPITMQCIKHYV 111
Query: 65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHS 124
G +++N +K + + SKD LRLW + LV F + GH+ V S
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV------AIFGGVEGHRDEVLS 165
Query: 125 IAAETSGNMVCSGSWDCTISLWRTNDS---DAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
+ G + S D ++ LWR N +A K N ++ ST
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 225
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTW 212
H V V W + I S S ++++ W
Sbjct: 226 RDIHRNYVDCVRW-LGDLILSKSCENAIVCW 255
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 110 RSFKILRGHKASVHSIA-AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ 168
++ ++ GH A V IA + N++ SGS DCT+ +W D G + ++
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD---GGLVLPLR------- 121
Query: 169 VEEPQLEGEAISTLVGHTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGK---DLSDI 223
E + TL GHT+ V V W Q + SA D+ + WDV G L
Sbjct: 122 --------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD 173
Query: 224 FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK 258
+ +D +G ALI D +R+ +PRK
Sbjct: 174 VHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRK 207
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 223 IFCGKALNCIDIG--GEGSALIAAGGSDPILRIWDPRKPGT----SAPVFQFSSHNSWIS 276
+ CG +DI +IA+G D + +W+ G PV H +
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 277 ACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI--DSHKDKVLCADWWRGDSVI 330
WH + L+SA D +++WD+ T + + D H D + DW R ++I
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 209 VRTWDV-EMGKDLSDIFCGKA----LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA 263
++ WD + G + S I L+C+D ++A GG D +L IWD R+ GT
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ-GT-M 271
Query: 264 PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP 307
PV +H + + +H + HL + S DG + WD T P
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVP 315
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 85/232 (36%), Gaps = 41/232 (17%)
Query: 59 ILEGHCGAVSSV--NIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNH---PKKIRSFK 113
ILEGH V+S+ + + + + S+D+T+ +WK EE + P K
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA---- 71
Query: 114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWR----TNDSDAAGNQ---VSIKKRKGN 166
L GH V +A S SWD T+ LW T G+Q S+ N
Sbjct: 72 -LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN 130
Query: 167 NQVEEPQLEGE-AISTLVG-----------HTQCVSSV-----------VWPQQETIYSA 203
Q+ E E + ++G H+ VS V V P S
Sbjct: 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 204 SWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
WD ++ W+ + +N + I G IA GG D L IWD
Sbjct: 191 GWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWD 241
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 237 EGSALIAAGGSDPILRIW----DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS 292
E S ++ +G D + IW + + P + HN ++S ++ F IS+S
Sbjct: 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-AISSS 95
Query: 293 YDGKVMLWDLRTAWPLSVIDSHKDKV 318
+D + LWDLRT H+ +V
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEV 121
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
++R+ + LRGH A ++++ T ++ S S D + +W TN A
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 114
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
+GN V+ +K R+GN +V L GHT +S +
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 165
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
I ++S D + WD+E G ++ + + + + L +G D ++WD
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 223
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
R+ F+ H S I+A C + N + F + S D L+DLR L SH
Sbjct: 224 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 277
Query: 315 KDKVLC 320
D ++C
Sbjct: 278 -DNIIC 282
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CADWWRGDSV 329
H + I A W S L+SAS DGK+++WD T + I V+ CA G+ V
Sbjct: 65 HLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 123
Query: 330 ISGGVDS 336
GG+D+
Sbjct: 124 ACGGLDN 130
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 40/146 (27%)
Query: 37 FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW 95
++G D ++W G+C GH ++++ + AT S D T RL+
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN----AFATGSDDATCRLF 264
Query: 96 KFDA-EELVNHPK----------------------------------KIRSFKILRGHKA 120
A +EL+ + K +L GH
Sbjct: 265 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 324
Query: 121 SVHSIAAETSGNMVCSGSWDCTISLW 146
V + G V +GSWD + +W
Sbjct: 325 RVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
++R+ + LRGH A ++++ T ++ S S D + +W TN A
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
+GN V+ +K R+GN +V L GHT +S +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 154
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
I ++S D + WD+E G ++ + + + + L +G D ++WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 212
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
R+ F+ H S I+A C + N + F + S D L+DLR L SH
Sbjct: 213 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 266
Query: 315 KDKVLC 320
D ++C
Sbjct: 267 -DNIIC 271
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CADWWRGDSV 329
H + I A W S L+SAS DGK+++WD T + I V+ CA G+ V
Sbjct: 54 HLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 330 ISGGVDS 336
GG+D+
Sbjct: 113 ACGGLDN 119
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 40/146 (27%)
Query: 37 FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW 95
++G D ++W G+C GH ++++ + AT S D T RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN----AFATGSDDATCRLF 253
Query: 96 KFDA-EELVNHPK----------------------------------KIRSFKILRGHKA 120
A +EL+ + K +L GH
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 121 SVHSIAAETSGNMVCSGSWDCTISLW 146
V + G V +GSWD + +W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
++R+ + LRGH A ++++ T ++ S S D + +W TN A
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
+GN V+ +K R+GN +V L GHT +S +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 154
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
I ++S D + WD+E G ++ + + + + L +G D ++WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 212
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
R+ F+ H S I+A C + N + F + S D L+DLR L SH
Sbjct: 213 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 266
Query: 315 KDKVLC 320
D ++C
Sbjct: 267 -DNIIC 271
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CADWWRGDSV 329
H + I A W S L+SAS DGK+++WD T + I V+ CA G+ V
Sbjct: 54 HLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 330 ISGGVDS 336
GG+D+
Sbjct: 113 ACGGLDN 119
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 40/146 (27%)
Query: 37 FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW 95
++G D ++W G+C GH ++++ + AT S D T RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN----AFATGSDDATCRLF 253
Query: 96 KFDA-EELVNHPK----------------------------------KIRSFKILRGHKA 120
A +EL+ + K +L GH
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 121 SVHSIAAETSGNMVCSGSWDCTISLW 146
V + G V +GSWD + +W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
++R+ + LRGH A ++++ T ++ S S D + +W TN A
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
+GN V+ +K R+GN +V L GHT +S +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 154
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
I ++S D + WD+E G ++ + + + + L +G D ++WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 212
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
R+ F+ H S I+A C + N + F + S D L+DLR L SH
Sbjct: 213 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 266
Query: 315 KDKVLC 320
D ++C
Sbjct: 267 -DNIIC 271
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CADWWRGDSV 329
H + I A W S L+SAS DGK+++WD T + I V+ CA G+ V
Sbjct: 54 HLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 330 ISGGVDS 336
GG+D+
Sbjct: 113 ACGGLDN 119
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 40/146 (27%)
Query: 37 FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW 95
++G D ++W G+C GH ++++ + AT S D T RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN----AFATGSDDATCRLF 253
Query: 96 KFDA-EELVNHPK----------------------------------KIRSFKILRGHKA 120
A +EL+ + K +L GH
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 121 SVHSIAAETSGNMVCSGSWDCTISLW 146
V + G V +GSWD + +W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
++R+ + LRGH A ++++ T ++ S S D + +W TN A
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
+GN V+ +K R+GN +V L GHT +S +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 154
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
I ++S D + WD+E G ++ + + + + L +G D ++WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 212
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
R+ F+ H S I+A C + N + F + S D L+DLR L SH
Sbjct: 213 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 266
Query: 315 KDKVLC 320
D ++C
Sbjct: 267 -DNIIC 271
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CADWWRGDSV 329
H + I A W S L+SAS DGK+++WD T + I V+ CA G+ V
Sbjct: 54 HLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 330 ISGGVDS 336
GG+D+
Sbjct: 113 ACGGLDN 119
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 40/146 (27%)
Query: 37 FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW 95
++G D ++W G+C GH ++++ + AT S D T RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN----AFATGSDDATCRLF 253
Query: 96 KFDA-EELVNHPK----------------------------------KIRSFKILRGHKA 120
A +EL+ + K +L GH
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 121 SVHSIAAETSGNMVCSGSWDCTISLW 146
V + G V +GSWD + +W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 31/197 (15%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+ ++S+D L++W K + + L GH+A+V IA G V S S D T
Sbjct: 154 LISSSQDMQLKIWSV---------KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT 204
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYS 202
I LW G + RK E P +I+ VG + + + ++ +
Sbjct: 205 IRLWEC----GTGTTIHTFNRK-----ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 203 ASWDHSVRTWDVEMGKDLSDIFCGK-----------ALNCIDIGGEGSALIAAGGSDPIL 251
++ V V + ++F + + N + + G + I AG + +L
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315
Query: 252 RIWDPRKPGTSAPVFQF 268
WD R P PV +F
Sbjct: 316 AQWDLRSP--ECPVGEF 330
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 31/197 (15%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+ ++S+D L++W K + + L GH+A+V IA G V S S D T
Sbjct: 151 LISSSQDMQLKIWSV---------KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT 201
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYS 202
I LW G + RK E P +I+ VG + + + ++ +
Sbjct: 202 IRLWEC----GTGTTIHTFNRK-----ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 203 ASWDHSVRTWDVEMGKDLSDIFCGK-----------ALNCIDIGGEGSALIAAGGSDPIL 251
++ V V + ++F + + N + + G + I AG + +L
Sbjct: 253 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 312
Query: 252 RIWDPRKPGTSAPVFQF 268
WD R P PV +F
Sbjct: 313 AQWDLRSP--ECPVGEF 327
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 176 GEAISTLVGHTQCVSSVVWPQQET-IYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCI 232
GE + + H V + ++ I + S D V+ WD GK L + + +NC
Sbjct: 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-LVHTYDEHSEQVNCC 705
Query: 233 DIGGEGSALIAAGGS-DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA 291
+ + L+ A GS D L++WD + +F H + ++ C++ L S
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---GHTNSVNHCRFSPDDEL-LASC 761
Query: 292 SYDGKVMLWDLRTA 305
S DG + LWD+R+A
Sbjct: 762 SADGTLRLWDVRSA 775
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 6 IEYIKAVAPQKEEEPSLHDDWV-SAVDGSNPGFILTGCYDNLGRVW-KAGGVCTHILEGH 63
++ KA +K + H+D V S+ +I T D ++W A G H + H
Sbjct: 639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 698
Query: 64 CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVH 123
V+ + ++ ++ +AT S D L+LW + +E N + GH SV+
Sbjct: 699 SEQVNCCHF--TNKSNHLLLATGSNDFFLKLWDLNQKECRN---------TMFGHTNSVN 747
Query: 124 SIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI 179
++ S S D T+ LW D +A + SI ++ E+P + E I
Sbjct: 748 HCRFSPDDELLASCSADGTLRLW---DVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 107/285 (37%), Gaps = 39/285 (13%)
Query: 54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK 113
G+ I GH + + D L + ++ + LW D+ V
Sbjct: 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRLKVAD-------- 877
Query: 114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ 173
RGH + VH + G+ + S D TI +W T N + K++ + +E +
Sbjct: 878 -CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK--KVCKNSAIVLKQEIDVVFQENE 934
Query: 174 LEGEAISTLVG---------------HTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGK 218
A+ + G Q + P E + D +++ ++ +
Sbjct: 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994
Query: 219 DLSD-IFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISA 277
S + KA+ I +G LI++ D ++++W+ + T VF +H +
Sbjct: 995 VFSSGVGHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQ---TGDYVF-LQAHQETVKD 1049
Query: 278 CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CA 321
+ S L+S S+DG V +W++ T H+ VL CA
Sbjct: 1050 FRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
IA+ G+D L+++ K T + +H + C + + + + + S D KV +WD
Sbjct: 630 IASCGADKTLQVF---KAETGEKLLDIKAHEDEVLCCAFSSDDSY-IATCSADKKVKIWD 685
Query: 302 LRTAWPLSVIDSHKDKVLCADW 323
T + D H ++V C +
Sbjct: 686 SATGKLVHTYDEHSEQVNCCHF 707
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 38 ILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK 96
+L+ +D +VW G H G V S I SD K+ ++ S D+T ++W
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC-AISSDATKF---SSTSADKTAKIWS 1113
Query: 97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND 150
FD + L+GH V A G ++ +G + I +W +D
Sbjct: 1114 FDL---------LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 176 GEAISTLVGHTQCVSSVVWPQQET-IYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCI 232
GE + + H V + ++ I + S D V+ WD GK L + + +NC
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-LVHTYDEHSEQVNCC 712
Query: 233 DIGGEGSALIAAGGS-DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA 291
+ + L+ A GS D L++WD + +F H + ++ C++ L S
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---GHTNSVNHCRFSPDDEL-LASC 768
Query: 292 SYDGKVMLWDLRTA 305
S DG + LWD+R+A
Sbjct: 769 SADGTLRLWDVRSA 782
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 6 IEYIKAVAPQKEEEPSLHDDWV-SAVDGSNPGFILTGCYDNLGRVW-KAGGVCTHILEGH 63
++ KA +K + H+D V S+ +I T D ++W A G H + H
Sbjct: 646 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 705
Query: 64 CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVH 123
V+ + ++ ++ +AT S D L+LW + +E N + GH SV+
Sbjct: 706 SEQVNCCHF--TNKSNHLLLATGSNDFFLKLWDLNQKECRN---------TMFGHTNSVN 754
Query: 124 SIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI 179
++ S S D T+ LW D +A + SI ++ E+P + E I
Sbjct: 755 HCRFSPDDELLASCSADGTLRLW---DVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 107/285 (37%), Gaps = 39/285 (13%)
Query: 54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK 113
G+ I GH + + D L + ++ + LW D+ V
Sbjct: 837 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRLKVAD-------- 884
Query: 114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ 173
RGH + VH + G+ + S D TI +W T N + K++ + +E +
Sbjct: 885 -CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK--KVCKNSAIVLKQEIDVVFQENE 941
Query: 174 LEGEAISTLVG---------------HTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGK 218
A+ + G Q + P E + D +++ ++ +
Sbjct: 942 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 1001
Query: 219 DLSD-IFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISA 277
S + KA+ I +G LI++ D ++++W+ + T VF +H +
Sbjct: 1002 VFSSGVGHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQ---TGDYVF-LQAHQETVKD 1056
Query: 278 CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CA 321
+ S L+S S+DG V +W++ T H+ VL CA
Sbjct: 1057 FRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1099
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
IA+ G+D L+++ K T + +H + C + + + + + S D KV +WD
Sbjct: 637 IASCGADKTLQVF---KAETGEKLLDIKAHEDEVLCCAFSSDDSY-IATCSADKKVKIWD 692
Query: 302 LRTAWPLSVIDSHKDKVLCADW 323
T + D H ++V C +
Sbjct: 693 SATGKLVHTYDEHSEQVNCCHF 714
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 38 ILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK 96
+L+ +D +VW G H G V S I SD K+ ++ S D+T ++W
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC-AISSDATKF---SSTSADKTAKIWS 1120
Query: 97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND 150
FD + L+GH V A G ++ +G + I +W +D
Sbjct: 1121 FDL---------LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1165
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 185 HTQCVSSVVWPQQET--IYSASWDHSVRTWDVEMGKDLSDIFCGKAL---NCIDIGGEGS 239
H V +V W +T S+S+D +++ WD + +D+F + + +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADVFNFEETVYSHHMSPVSTKH 156
Query: 240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML 299
L+A G P +++ D K G+ + + Q H I A W + + L +AS D +V L
Sbjct: 157 CLVAVGTRGPKVQLCD-LKSGSCSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 300 WDLRTAWP-LSVIDSHKDK 317
WD+R A L +D H K
Sbjct: 214 WDVRRASGCLITLDQHNGK 232
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 37/191 (19%)
Query: 54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEE-----LVNHP-K 107
G C+HIL+GH + +V+ S Y+ +ATAS D ++LW L H K
Sbjct: 176 GSCSHILQGHRQEILAVSW--SPRYDYI-LATASADSRVKLWDVRRASGCLITLDQHNGK 232
Query: 108 KIRSFKILR-GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN 166
K ++ + H V+ + + G + + D + LW N S+ V+ K N
Sbjct: 233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW--NSSNGENTLVNYGKVCNN 290
Query: 167 NQ---------------VEEPQ---------LEGEAISTLVGHTQCVSSVVWPQQ-ETIY 201
++ V P GE I+ L GH + V V+ + +Y
Sbjct: 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY 350
Query: 202 SASWDHSVRTW 212
S S D ++ W
Sbjct: 351 SGSRDCNILAW 361
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 100/267 (37%), Gaps = 50/267 (18%)
Query: 24 DDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI----------------LEGHCGAV 67
D W+ V + GF+ + CYD+ + GG T I L GH G V
Sbjct: 48 DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNV 107
Query: 68 SSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV-HSIA 126
S++ DG+ V + S D+T ++WK + + N L+ H ASV +
Sbjct: 108 CSLSF--QDGV----VISGSWDKTAKVWK-EGSLVYN----------LQAHNASVWDAKV 150
Query: 127 AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL------------ 174
S N + S D TI LW+ + + + + V++
Sbjct: 151 VSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLV 210
Query: 175 ---EGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNC 231
G+ + T GH V + I S D +VR W E G L + A++
Sbjct: 211 DXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS-LKQVITLPAISI 269
Query: 232 IDIGGEGSALIAAGGSDPILRIWDPRK 258
+ + I G SD ++RI+ K
Sbjct: 270 WSVDCXSNGDIIVGSSDNLVRIFSQEK 296
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 102/260 (39%), Gaps = 53/260 (20%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
VA+ S+D T+RLW D + L ++ + ++S+ ++ ++ G D
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGT---------VVYTGQGFLNSVCYDSEKELLLFGGKDTX 82
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYS 202
I N V + G E+P + TL+GH V S+ + Q + S
Sbjct: 83 I------------NGVPLFATSG----EDP------LYTLIGHQGNVCSLSF-QDGVVIS 119
Query: 203 ASWDHSVRTWDVEMGKDLSDIFCGKALNC------IDIGGEGSALIAAGGSDPILRIWDP 256
SWD + + W K+ S ++ +A N + E L A+ +D +++W
Sbjct: 120 GSWDKTAKVW-----KEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS--ADKTIKLWQN 172
Query: 257 RKPGTSAPVFQFSS-HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK 315
K + FS HN + + H IS S DG + L D T L + H+
Sbjct: 173 DK-----VIKTFSGIHNDVVRHLAVVDDG--HFISCSNDGLIKLVDXHTGDVLRTYEGHE 225
Query: 316 DKVLCADWWRGDSVISGGVD 335
V C ++S G D
Sbjct: 226 SFVYCIKLLPNGDIVSCGED 245
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 165 GNNQVEEPQLEGEA-ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDI 223
GN V+ +E + + T+ GH V + W + + S S ++ DV +
Sbjct: 154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGT 212
Query: 224 FCGKALNCIDIGGEGSAL-IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISA---CK 279
G + + L +A+GG+D +++IWD R +S P F ++HN+ + A C
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVAWCP 269
Query: 280 WHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS 313
W + + + D ++ W+ T ++ +D+
Sbjct: 270 WQS-NLLATGGGTMDKQIHFWNAATGARVNTVDA 302
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 29 AVDGSNPGFILTGCYDNLGRVWKAGGVCTH--ILEGHCGAVSSVNIIKSDGLKYVTVATA 86
A + +P +GC D +VW G + + G V+ V+ Y + TA
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY--MITA 204
Query: 87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW 146
S D T+++W + + V L GH ++V + ++ SGS D T+ +W
Sbjct: 205 SDDLTIKIWDYQTKSCV---------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 147 RT 148
+
Sbjct: 256 NS 257
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 55/271 (20%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+ S D +R++ ++ E K+ F+ H + SIA + V SGS D T
Sbjct: 70 IIVGSDDFRIRVFNYNTGE------KVVDFE---AHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE--TI 200
+ LW NN E E GH V V + ++ T
Sbjct: 121 VKLWNWE----------------NNWALEQTFE--------GHEHFVMCVAFNPKDPSTF 156
Query: 201 YSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGG-EGSALIAAGGSDPILRIWDPR 257
S D +V+ W + + G + +N +D + D ++IWD +
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Query: 258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD-------------LRT 304
T + V H S +S +H + +IS S DG + +W+ L
Sbjct: 217 ---TKSCVATLEGHMSNVSFAVFH-PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 305 AWPLSVIDSHKDKVLCADWWRGDSVISGGVD 335
+W ++ + + + + + G +V+S G D
Sbjct: 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGND 303
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 29 AVDGSNPGFILTGCYDNLGRVWKAGGVCTH--ILEGHCGAVSSVNIIKSDGLKYVTVATA 86
A + +P +GC D +VW G + + G V+ V+ Y + TA
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY--MITA 204
Query: 87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW 146
S D T+++W + + V L GH ++V + ++ SGS D T+ +W
Sbjct: 205 SDDLTIKIWDYQTKSCV---------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 147 RT 148
+
Sbjct: 256 NS 257
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 55/271 (20%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+ S D +R++ ++ E K+ F+ H + SIA + V SGS D T
Sbjct: 70 IIVGSDDFRIRVFNYNTGE------KVVDFE---AHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE--TI 200
+ LW NN E E GH V V + ++ T
Sbjct: 121 VKLWNWE----------------NNWALEQTFE--------GHEHFVMCVAFNPKDPSTF 156
Query: 201 YSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGG-EGSALIAAGGSDPILRIWDPR 257
S D +V+ W + + G + +N +D + D ++IWD +
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Query: 258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD-------------LRT 304
T + V H S +S +H + +IS S DG + +W+ L
Sbjct: 217 ---TKSCVATLEGHMSNVSFAVFH-PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 305 AWPLSVIDSHKDKVLCADWWRGDSVISGGVD 335
+W ++ + + + + + G +V+S G D
Sbjct: 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGND 303
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 116/281 (41%), Gaps = 54/281 (19%)
Query: 84 ATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC-T 142
A S D +L LW A + K I S ++ S + + N + +G+ D +
Sbjct: 39 ANFSTDSSLELWSLLA---ADSEKPIASLQV-----DSKFNDLDWSHNNKIIAGALDNGS 90
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW--PQQETI 200
+ L+ TN+++ A N +++ H+ V +V + Q +
Sbjct: 91 LELYSTNEANNAIN---------------------SMARFSNHSSSVKTVKFNAKQDNVL 129
Query: 201 YSASWDHSVRTWDV----EMGKDLSDIFCGKALNCIDI------GGEGSALIAAGGSDPI 250
S + + WD+ E + + + G++++ +D + + A+ GS
Sbjct: 130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF 189
Query: 251 LRIWDPRKPGTSAPVFQFSSHNSWI----SACKWHNKSWFHLISAS---YDGKVMLWDLR 303
IWD K ++S NS I S +WH K+ + +A+ D +++WDLR
Sbjct: 190 ASIWD-LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248
Query: 304 TA-WPLSVIDS-HKDKVLCADWWRGDS--VISGGVDSKLCV 340
A PL ++ H+ +L DW D ++S G D+ + +
Sbjct: 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 24/149 (16%)
Query: 14 PQKE-EEPSLHDDWVSAVDGSNP----GFILTGCYDNLGRVWK---AGGVCTHILEGHCG 65
P K+ E S DD + + S P F++ G + N R W+ +G + H G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 66 AVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSI 125
V V DG K V TAS D+T ++W + + + + H A V +I
Sbjct: 88 PVLDV-CWSDDGSK---VFTASCDKTAKMWDLSSNQAIQ----------IAQHDAPVKTI 133
Query: 126 AAETSGNMVC--SGSWDCTISLWRTNDSD 152
+ N C +GSWD T+ W T S+
Sbjct: 134 HWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 200 IYSASWDHSVRTWDVE-MGKDLSDIFCGKALNCIDI--GGEGSALIAAGGSDPILRIWDP 256
+ + SW + VR W+V+ G+ + +D+ +GS + A D ++WD
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-CDKTAKMWD- 114
Query: 257 RKPGTSAPVFQFSSHNSWISACKW-HNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK 315
+S Q + H++ + W ++ +++ S+D + WD R++ P+ V+
Sbjct: 115 ---LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-P 170
Query: 316 DKVLCAD 322
++ CAD
Sbjct: 171 ERCYCAD 177
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 29 AVDGSNPGFILTGCYDNLGRVWKAGGVCTH--ILEGHCGAVSSVNIIKSDGLKYVTVATA 86
A + +P +GC D +VW G + + G V+ V+ Y+ TA
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI--TA 204
Query: 87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW 146
S D T+++W + + V L GH ++V + ++ SGS D T+ +W
Sbjct: 205 SDDLTIKIWDYQTKSCV---------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 147 RT 148
+
Sbjct: 256 NS 257
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 84/227 (37%), Gaps = 42/227 (18%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+ S D +R++ ++ E K+ F+ H + SIA + V SGS D T
Sbjct: 70 IIVGSDDFRIRVFNYNTGE------KVVDFE---AHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE--TI 200
+ LW NN E E GH V V + ++ T
Sbjct: 121 VKLWNWE----------------NNWALEQTFE--------GHEHFVMCVAFNPKDPSTF 156
Query: 201 YSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGG-EGSALIAAGGSDPILRIWDPR 257
S D +V+ W + + G + +N +D + D ++IWD +
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Query: 258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT 304
T + V H S +S +H + +IS S DG + +W+ T
Sbjct: 217 ---TKSCVATLEGHMSNVSFAVFH-PTLPIIISGSEDGTLKIWNSST 259
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 189 VSSVVWPQQETIYSASWDHSVRTWDV-EMGKDLSDIFC----GKALNCIDIGGEGSALIA 243
V+ V W ++ I AS +V W++ E L + F + + + +G+ ++
Sbjct: 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVS 156
Query: 244 AGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR 303
GG D +++WD + SS + ++AC + + +S DG+++LWD R
Sbjct: 157 -GGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF---LSCGEDGRILLWDTR 212
Query: 304 TAWPLSVID 312
P + ID
Sbjct: 213 KPKPATRID 221
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 29 AVDGSNPGFILTGCYDNLGRVWKAGGVCTH--ILEGHCGAVSSVNIIKSDGLKYVTVATA 86
A + +P +GC D +VW G + + G V+ V+ Y+ TA
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI--TA 204
Query: 87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW 146
S D T+++W + + V L GH ++V + ++ SGS D T+ +W
Sbjct: 205 SDDLTIKIWDYQTKSCV---------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 147 RT 148
+
Sbjct: 256 NS 257
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 55/271 (20%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
+ S D +R++ ++ E K+ F+ H + SIA + V SGS D T
Sbjct: 70 IIVGSDDFRIRVFNYNTGE------KVVDFE---AHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE--TI 200
+ LW NN E E GH V V + ++ T
Sbjct: 121 VKLWNWE----------------NNWALEQTFE--------GHEHFVMCVAFNPKDPSTF 156
Query: 201 YSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGG-EGSALIAAGGSDPILRIWDPR 257
S D +V+ W + + G + +N +D + D ++IWD +
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Query: 258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD-------------LRT 304
T + V H S +S +H + +IS S DG + +W+ L
Sbjct: 217 ---TKSCVATLEGHMSNVSFAVFH-PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 305 AWPLSVIDSHKDKVLCADWWRGDSVISGGVD 335
+W ++ + + + + + G +V+S G D
Sbjct: 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGND 303
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 17/162 (10%)
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGS 239
L GH + V + + S S+D +V+ W++ G D C G L+C DI + +
Sbjct: 1046 LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC-DISHDAT 1104
Query: 240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML 299
++ +D +IW P+ + HN + + S L + +G++ +
Sbjct: 1105 KF-SSTSADKTAKIW---SFDLLLPLHELRGHNGCVRCSAFSVDSTL-LATGDDNGEIRI 1159
Query: 300 WDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVS 341
W++ L LCA + GG + LC S
Sbjct: 1160 WNVSNGELLH---------LCAPLSEEGAATHGGWVTDLCFS 1192
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 200 IYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGGEGS-ALIAAGGSDPILRIWDP 256
I + S D V+ W+ M +L + + +NC L+A G SD L++WD
Sbjct: 678 IATCSVDKKVKIWN-SMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 257 RKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA 305
+ +F H + ++ C++ L S S DG + LWD +A
Sbjct: 737 NQKECRNTMF---GHTNSVNHCRFSPDDKL-LASCSADGTLKLWDATSA 781
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
E IA+ G+D L+++ K T + + +H + C + F + + S D K
Sbjct: 631 EDGQRIASCGADKTLQVF---KAETGEKLLEIKAHEDEVLCCAFSTDDRF-IATCSVDKK 686
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLCADW 323
V +W+ T + D H ++V C +
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHF 713
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 37/134 (27%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN--MVCSGSWD 140
+AT S D+ +++W ELV+ + H V+ S + ++ +GS D
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDE---------HSEQVNCCHFTNSSHHLLLATGSSD 728
Query: 141 CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQET 199
C + LW N + E +T+ GHT V+ + P +
Sbjct: 729 CFLKLWDLN-------------------------QKECRNTMFGHTNSVNHCRFSPDDKL 763
Query: 200 IYSASWDHSVRTWD 213
+ S S D +++ WD
Sbjct: 764 LASCSADGTLKLWD 777
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 63 HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV 122
H G V S +I D K+ ++ S D+T ++W FD + LRGH V
Sbjct: 1090 HQGTVLSCDI-SHDATKF---SSTSADKTAKIWSFDL---------LLPLHELRGHNGCV 1136
Query: 123 HSIAAETSGNMVCSGSWDCTISLWRTNDSD 152
A ++ +G + I +W ++ +
Sbjct: 1137 RCSAFSVDSTLLATGDDNGEIRIWNVSNGE 1166
>pdb|3E4R|A Chain A, Crystal Structure Of The Alkanesulfonate Binding Protein
(Ssua) From The Phytopathogenic Bacteria Xanthomonas
Axonopodis Pv. Citri Bound To Hepes
pdb|3KSJ|A Chain A, The Alkanesulfonate-Binding Protein Ssua From Xabthomonas
Axonopodis Pv. Citri Bound To Mes
pdb|3KSX|A Chain A, The Alkanesulfonate-Binding Protein Ssua From Xanthomonas
Axonopodis Pv. Citri Bound To Mops
Length = 324
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 171 EPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTW-DVEMGKDLSDIFCGKAL 229
+P L E +G+ + VSS+V +Q + + + TW + G L + AL
Sbjct: 21 QPALAAEPAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLE-----AL 75
Query: 230 NC--IDIGGEG--SALIA-AGGSDPILRIWDPRKP 259
N ID+GG G L A A G+D + W P P
Sbjct: 76 NVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTP 110
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKV-----LCADWW 324
+H+SW+ + + N S L SA +DGK+ WD++T ++ ++ H D + + A
Sbjct: 299 AHSSWVMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 357
Query: 325 RGDSVISGGV 334
GDS+ GV
Sbjct: 358 HGDSLAEPGV 367
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 29/151 (19%)
Query: 87 SKDQTLR-LWKFDAEE-LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTIS 144
S+ TLR L+ F+++ ++N+ IRS K + S+ +IA + S S+ C I+
Sbjct: 222 SELSTLRPLYNFESQHSMINNSNSIRSVKF--SPQGSLLAIAHD-------SNSFGC-IT 271
Query: 145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ-ETIYSA 203
L+ T +R G+ V P +A H+ V S+ + ET+ SA
Sbjct: 272 LYETE----------FGERIGSLSV--PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 319
Query: 204 SWDHSVRTWDVEMGKDLSDIFCGKALNCIDI 234
WD +R WDV+ + ++ + ++C DI
Sbjct: 320 GWDGKLRFWDVKTKERITTL----NMHCDDI 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKV-----LCADWW 324
+H+SW+ + + N S L SA +DGK+ WD++T ++ ++ H D + + A
Sbjct: 289 AHSSWVMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347
Query: 325 RGDSVISGGV 334
GDS+ GV
Sbjct: 348 HGDSLAEPGV 357
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 87 SKDQTLR-LWKFDAEE-LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTIS 144
S+ TLR L+ F+++ ++N+ IRS K + S+ +IA + S S+ C I+
Sbjct: 212 SELSTLRPLYNFESQHSMINNSNSIRSVKF--SPQGSLLAIAHD-------SNSFGC-IT 261
Query: 145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ-ETIYSA 203
L+ T +R G+ V P +A H+ V S+ + ET+ SA
Sbjct: 262 LYETE----------FGERIGSLSV--PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309
Query: 204 SWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSAL 241
WD +R WDV+ + ++ + ++C DI E L
Sbjct: 310 GWDGKLRFWDVKTKERITTL----NMHCDDIEIEEDIL 343
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 67/232 (28%)
Query: 34 NPGFILTGCYDNLGRVWKAGGVCTHI---LEGHCGAVSSVNIIKSDGLKYVTVATASKDQ 90
N ++TG D+L +VWK + LEGH V SV+I + A++S D
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT----LPIAASSSLDA 102
Query: 91 TLRLWKF-----------------------DAEELV--NHPKKIRSFKILRGHKAS---- 121
+RLW D++ L H K+ F + G K
Sbjct: 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT 162
Query: 122 ----VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE 177
+ SIA G + SG+ D I+++ D A G+
Sbjct: 163 RGKFILSIAYSPDGKYLASGAIDGIINIF-----DIA--------------------TGK 197
Query: 178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKA 228
+ TL GH + S+ + P + + +AS D ++ +DV+ +L+ G A
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHA 248
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 41 GCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA 99
G D R+W G C ++ H S I+ S K + L +WK+
Sbjct: 297 GTSDRHIRIWNVCSGACLSAVDAHSQVCS---ILWSPHYKELISGHGFAQNQLVIWKYPT 353
Query: 100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAA 154
V L+GH + V S+ G V S + D T+ LWR + D A
Sbjct: 354 MAKVAE---------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 38/210 (18%)
Query: 122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
+ S+A GN + G+ + LW V +KR N
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLW----------DVQQQKRLRN--------------- 184
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI--GGEGS 239
+ H+ V S+ W + S S + DV + + G + + +G
Sbjct: 185 MTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 243
Query: 240 ALIAAGGSDPILRIWDPRKPGTSA--PVFQFSSHNSWISA---CKWHNKSWFHLISASYD 294
L A+GG+D ++ +W P PG P+ F+ H + A C W + + D
Sbjct: 244 HL-ASGGNDNLVNVW-PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV-LATGGGTSD 300
Query: 295 GKVMLWDLRTAWPLSVIDSHKDKVLCADWW 324
+ +W++ + LS +D+H +C+ W
Sbjct: 301 RHIRIWNVCSGACLSAVDAHSQ--VCSILW 328
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 41 GCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA 99
G D R+W G C ++ H S I+ S K + L +WK+
Sbjct: 308 GTSDRHIRIWNVCSGACLSAVDAHSQVCS---ILWSPHYKELISGHGFAQNQLVIWKYPT 364
Query: 100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAA 154
V L+GH + V S+ G V S + D T+ LWR + D A
Sbjct: 365 MAKVAE---------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 410
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 38/210 (18%)
Query: 122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
+ S+A GN + G+ + LW V +KR +
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLW----------DVQQQKR---------------LRN 195
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI--GGEGS 239
+ H+ V S+ W + S S + DV + + G + + +G
Sbjct: 196 MTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 254
Query: 240 ALIAAGGSDPILRIWDPRKPGTSA--PVFQFSSHNSWISA---CKWHNKSWFHLISASYD 294
L A+GG+D ++ +W P PG P+ F+ H + A C W + + D
Sbjct: 255 HL-ASGGNDNLVNVW-PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV-LATGGGTSD 311
Query: 295 GKVMLWDLRTAWPLSVIDSHKDKVLCADWW 324
+ +W++ + LS +D+H +C+ W
Sbjct: 312 RHIRIWNVCSGACLSAVDAHSQ--VCSILW 339
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 95/270 (35%), Gaps = 68/270 (25%)
Query: 20 PSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGV------CTHILEGHCGAVSSVNII 73
P+ + + A + G +L G GR W AG + C EG C A +
Sbjct: 26 PACMERQLEAARYRSDGALLLGASSLSGRCW-AGSLWLFKDPCAAPNEGFCSA----GVQ 80
Query: 74 KSDGLKYVT------VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAA 127
G+ +T + AS + LW+ D E + I S H V +++
Sbjct: 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETL-----IVSKFCKYEHDDIVSTVSV 135
Query: 128 ETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ 187
+SG SGS D I +W D A V R QV
Sbjct: 136 LSSGTQAVSGSKDICIKVW-----DLAQQVVLSSYRAHAAQV-----------------T 173
Query: 188 CVSSVVWPQQETIY-SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG 246
CV++ P +++++ S S D+ + WD K S I C +A G
Sbjct: 174 CVAAS--PHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-----------------SAPG 214
Query: 247 SDPILRIWDPRKPGTSAPVFQFSSHNSWIS 276
P W P++ + VF F N +S
Sbjct: 215 YLPTSLAWHPQQ----SEVFVFGDENGTVS 240
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 41 GCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA 99
G D R+W G C ++ H S I+ S K + L +WK+
Sbjct: 217 GTSDRHIRIWNVCSGACLSAVDAHSQVCS---ILWSPHYKELISGHGFAQNQLVIWKYPT 273
Query: 100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSD 152
V L+GH + V S+ G V S + D T+ LWR + D
Sbjct: 274 MAKVAE---------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 38/210 (18%)
Query: 122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
+ S+A GN + G+ + LW V +KR N
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLW----------DVQQQKRLRN--------------- 104
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI--GGEGS 239
+ H+ V S+ W + S S + DV + + G + + +G
Sbjct: 105 MTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163
Query: 240 ALIAAGGSDPILRIWDPRKPGTSA--PVFQFSSHNSWISA---CKWHNKSWFHLISASYD 294
L A+GG+D ++ +W P PG P+ F+ H + A C W + + D
Sbjct: 164 HL-ASGGNDNLVNVW-PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV-LATGGGTSD 220
Query: 295 GKVMLWDLRTAWPLSVIDSHKDKVLCADWW 324
+ +W++ + LS +D+H +C+ W
Sbjct: 221 RHIRIWNVCSGACLSAVDAHSQ--VCSILW 248
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 30/124 (24%)
Query: 195 PQQETIYSASW-----------DHSVRTWDVEMGKDLSDIFCGK--ALNCIDIGGEGSAL 241
P Q I++ SW D ++R WDV K C + L+ +G + +
Sbjct: 251 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK------CVQKWTLDKQQLGNQQVGV 304
Query: 242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNK-----SWFHLISASYDGK 296
+A G RI GT F H+ + HNK + LIS SYDG+
Sbjct: 305 VATGNG----RIISLSLDGTLN--FYELGHDEVLKTISGHNKGITALTVNPLISGSYDGR 358
Query: 297 VMLW 300
+M W
Sbjct: 359 IMEW 362
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
VAT S D + ++ V P KI K L HK V+++ ET +V SG+ D
Sbjct: 556 VATGSLDTNIFIYS------VKRPMKI--IKALNAHKDGVNNLLWETPSTLVSSGA-DAC 606
Query: 143 ISLW 146
I W
Sbjct: 607 IKRW 610
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 32/120 (26%)
Query: 115 LRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL 174
L GH + + + ++ S S D T+ +W GN GN+Q
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH------GGN--------GNSQ------ 282
Query: 175 EGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLS-------DIFCGK 227
+ GH+Q + S W + + S S D SVR W ++ L+ IF G+
Sbjct: 283 -----NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR 337
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
L+ + D LRIW G F H+ I + W +IS S DG V LW
Sbjct: 261 LLLSASDDGTLRIW---HGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLW 315
Query: 301 DLR--TAWPLSVID 312
L+ T LS++D
Sbjct: 316 SLKQNTLLALSIVD 329
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 263 APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCAD 322
P + H+ IS ++++ + L+SAS DG + +W + H ++ A
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKL-LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296
Query: 323 WWRGDSVISGGVD 335
W D VIS +D
Sbjct: 297 WVGDDKVISCSMD 309
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 30/116 (25%)
Query: 104 NHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKR 163
+H K I+ L GH+ + + G+++ S S D + S+W +
Sbjct: 21 SHMKAIK----LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS--------------- 61
Query: 164 KGNNQVEEPQLEGEAISTLVGHTQCVSSV-VWPQQETIYSASWDHSVRTWDVEMGK 218
L GE + TL GHT + S+ V + + S D+S++ WDV G+
Sbjct: 62 ----------LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 32 GSNPGFI---LTGCYDNLGRVWKAGGVCT----HILEGHCGAVSSVNIIKSDGLKYVTVA 84
G P +I +G DNL ++WK LE H V V S GL T+A
Sbjct: 173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232
Query: 85 TASKDQTLRLWKF-DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTI 143
+ S+D + +W DA PK + F + H ++ + N++ D +
Sbjct: 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH------VSWSITANILAVSGGDNKV 286
Query: 144 SLWR 147
+LW+
Sbjct: 287 TLWK 290
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF---HLISASYDGKVM 298
A+GG D ++++W + G + +H+ W+ W + S S DG+V
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241
Query: 299 LW 300
+W
Sbjct: 242 IW 243
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 83 VATASKDQTLRLWKFDAE----ELVNHPKKIRSFKILRGHKASVHSI--AAETSGNMVCS 136
VAT S DQ ++++K D + EL + R H +S+ +I A+ G ++ S
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDS---------WRAHDSSIVAIDWASPEYGRIIAS 76
Query: 137 GSWDCTISLWRTN 149
S+D T+ LW +
Sbjct: 77 ASYDKTVKLWEED 89
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 83 VATASKDQTLRLWKFDAE----ELVNHPKKIRSFKILRGHKASVHSI--AAETSGNMVCS 136
VAT S DQ ++++K D + EL + R H +S+ +I A+ G ++ S
Sbjct: 24 VATCSSDQHIKVFKLDKDTSNWELSDS---------WRAHDSSIVAIDWASPEYGRIIAS 74
Query: 137 GSWDCTISLWRTN 149
S+D T+ LW +
Sbjct: 75 ASYDKTVKLWEED 87
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 83 VATASKDQTLRLWKFDAE----ELVNHPKKIRSFKILRGHKASVHSI--AAETSGNMVCS 136
VAT S DQ ++++K D + EL + R H +S+ +I A+ G ++ S
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDS---------WRAHDSSIVAIDWASPEYGRIIAS 76
Query: 137 GSWDCTISLWRTN 149
S+D T+ LW +
Sbjct: 77 ASYDKTVKLWEED 89
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 242 IAAGGSDPILRIWDPRKP----GTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD-GK 296
I G D +++WDPR+ PV + + W A ++ A YD G
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 297 VMLWDLR 303
+ L+DLR
Sbjct: 192 IKLFDLR 198
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 38 ILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL 92
+TG DNL ++WK V LEGH V V + L+ +A+ S+D+T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY-LASVSQDRTC 231
Query: 93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTN 149
+W D E+ ++ K + + SGN++ D ++LW+ N
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKF----PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 38 ILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL 92
+TG DNL ++WK V LEGH V V + L+ +A+ S+D+T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY-MASVSQDRTC 231
Query: 93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTN 149
+W D E+ ++ K + + SGN++ D ++LW+ N
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKF----PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|2VRK|A Chain A, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|B Chain B, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|C Chain C, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
Length = 496
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 26 WVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIK 74
W G+NPGF+ N R G HI HC V NI +
Sbjct: 302 WYDVEPGTNPGFLYQ---QNSIRDALVAGATLHIFHRHCDRVRXANIAQ 347
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 38 ILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL 92
+TG DNL ++WK V LEGH V V + L+ A+ S+D+T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYX-ASVSQDRTC 231
Query: 93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTN 149
+W D E+ ++ K + + SGN++ D ++LW+ N
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKF----PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|2VRQ|A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|B Chain B, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|C Chain C, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
Length = 496
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 26 WVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIK 74
W G+NPGF+ N R G HI HC V NI +
Sbjct: 302 WYDVEPGTNPGFLYQ---QNSIRDALVAGATLHIFHRHCDRVRMANIAQ 347
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 30/124 (24%)
Query: 195 PQQETIYSASW-----------DHSVRTWDVEMGKDLSDIFCGK--ALNCIDIGGEGSAL 241
P Q I++ SW D ++R WDV K C + L+ +G + +
Sbjct: 251 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK------CVQKWTLDKQQLGNQQVGV 304
Query: 242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNK-----SWFHLISASYDGK 296
+A G RI GT F H+ + HNK + LIS SYDG+
Sbjct: 305 VATGNG----RIISLSLDGTLN--FYELGHDEVLKTISGHNKGITALTVNPLISGSYDGR 358
Query: 297 VMLW 300
+ W
Sbjct: 359 IXEW 362
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
VAT S D + ++ V P KI K L HK V+++ ET +V SG+ D
Sbjct: 556 VATGSLDTNIFIYS------VKRPXKI--IKALNAHKDGVNNLLWETPSTLVSSGA-DAC 606
Query: 143 ISLW 146
I W
Sbjct: 607 IKRW 610
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 38 ILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL 92
+TG DNL ++WK V LEGH V V + L+ +A+ S+D+T
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY-LASVSQDRTC 233
Query: 93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTN 149
+W D E+ ++ K + + SGN++ D ++LW+ N
Sbjct: 234 IIWTQDNEQGPWKKTLLKEEKF----PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286
>pdb|1DZL|A Chain A, L1 Protein Of Human Papillomavirus 16
Length = 505
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 39 LTGCYDNLGRVWKAGGVCTHIL--EGHCGAVSSVNIIKSDG 77
L GC +G W G CT + G C + +N + DG
Sbjct: 158 LIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDG 198
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW 194
+D + + N +DAAGN +S K K N+ + P++ + ++ ++ +V+W
Sbjct: 91 YDLALPMG-VNIADAAGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIW 145
>pdb|2JLC|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
pdb|2JLC|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
Length = 577
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 289 ISASYDGKVMLWDLRTAWPL--SVIDSHKDKVLCADWWRGDSVISGGV-DSKLCVSSGVS 345
+SA KV LW WPL V+ + CAD W G++ + + +++ V G S
Sbjct: 250 MSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSS 309
Query: 346 I 346
+
Sbjct: 310 L 310
>pdb|3FLM|A Chain A, Crystal Structure Of Mend From E.Coli
pdb|3FLM|B Chain B, Crystal Structure Of Mend From E.Coli
pdb|3HWW|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWW|D Chain D, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWX|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|B Chain B, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|I Chain I, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|J Chain J, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|R Chain R, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|S Chain S, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|Z Chain Z, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|1 Chain 1, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
Length = 556
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 289 ISASYDGKVMLWDLRTAWPL--SVIDSHKDKVLCADWWRGDSVISGGV-DSKLCVSSGVS 345
+SA KV LW WPL V+ + CAD W G++ + + +++ V G S
Sbjct: 229 MSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSS 288
Query: 346 I 346
+
Sbjct: 289 L 289
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 182 LVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLS 221
L GH VSS+ + + SA D + WD + GK+LS
Sbjct: 237 LFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLS 276
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 18/141 (12%)
Query: 209 VRTWDVEMGKDLSDIFCGKALNCID---------IGGEGSALIAAGGSDPILRIWDPRKP 259
V+ WD+ + S + L+C++ + +G LI GG L IWD P
Sbjct: 74 VKVWDISHPGNKSPV---SQLDCLNRDNYIRSCKLLPDGCTLIV-GGEASTLSIWDLAAP 129
Query: 260 GTSAPV-FQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKV 318
S+ + A +K F S DG + +WDL + H D
Sbjct: 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCS---DGNIAVWDLHNQTLVRQFQGHTDGA 186
Query: 319 LCADWWR-GDSVISGGVDSKL 338
C D G + +GG+D+ +
Sbjct: 187 SCIDISNDGTKLWTGGLDNTV 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,563,802
Number of Sequences: 62578
Number of extensions: 486939
Number of successful extensions: 2149
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 391
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)