BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036315
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 342 bits (878), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 186/449 (41%), Positives = 264/449 (58%), Gaps = 21/449 (4%)
Query: 4 VSFKNRCTVKPAEPTYNGILPLSELDQIGTITHIPTIYFYQ-QPSENWLNPSDKVFKTLK 62
+ K V+PA+ T L S +D + H P++YFY+ S N+ + K LK
Sbjct: 8 IEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDA-----KVLK 62
Query: 63 DSLSFALVHFYPLAGRLRWIGRGRLELECNAAGVELVEAESRAKLEDLGDLSPRPEYNYL 122
D+LS ALV FYP+AGRL+ GR+E+ECN GV VEAES ++D GD +P E L
Sbjct: 63 DALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRL 122
Query: 123 VPAVDYTLPIQELPLVLVQLTRFQCGGISLSFTISHAVADGPSALHFIFEWARIARREPL 182
+PAVDY+ I L+++Q+T F+CGG+SL + H ADG S LHFI W+ +AR +
Sbjct: 123 IPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV 182
Query: 183 GLPPFLDRKVLQAGEPPVSYPLLDHAEFDHPP-LLIGQTDNIEERKKKTTVCMLKLSETQ 241
LPPF+DR +L+A +PP P H E+ PP L + + +T V + KL+ Q
Sbjct: 183 TLPPFIDRTLLRARDPP--QPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQ 240
Query: 242 VKKLKNMANEGHCNDIGHPFSRYETVTGHLWRCACKARGHKAEQTTALGVCVDSRSRMQP 301
+ LK + E N I +S YE + GH+WRCACKARG + +Q T L + D R+R++P
Sbjct: 241 ISALKAKSKE-DGNTIS--YSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRP 297
Query: 302 PLPLGYFGNATLDVIALSRSGELVSKPLGYASSKIRRAIVSVTEEYVRSGIEYLKNQPDL 361
LP GYFGN ++ +G+L KP+ YA+SKI A+ + +Y+RS ++YL+ QPDL
Sbjct: 298 SLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDL 357
Query: 362 TKF-QDLHALGGDEGPFYGNPNLGVVSWLTLPIYGLDFGWGKEIHMGPGTHDFDGDSLIL 420
+ H + PNLG+ SW+ LPI+ DFGWG+ I MGPG ++G S IL
Sbjct: 358 KALVRGAHT--------FKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIL 409
Query: 421 PNPNEDGGLIVALCLQVCHMEAFKKHFYE 449
P+P DG + VA+ LQ HM+ F+ Y+
Sbjct: 410 PSPTNDGSMSVAISLQGEHMKLFQSFLYD 438
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 341 bits (875), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 188/453 (41%), Positives = 267/453 (58%), Gaps = 29/453 (6%)
Query: 4 VSFKNRCTVKPAEPTYNGILPLSELDQIGTITHIPTIYFYQ-QPSENWLNPSDKVFKTLK 62
+ K V+PA+ T L S +D + H P++YFY+ S N+ + K LK
Sbjct: 5 IEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDA-----KVLK 59
Query: 63 DSLSFALVHFYPLAGRLRWIGRGRLELECNAAGVELVEAESRAKLEDLGDLSPRPEYNYL 122
D+LS ALV FYP+AGRL+ GR+E+ECN GV VEAES ++D GD +P E L
Sbjct: 60 DALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRL 119
Query: 123 VPAVDYTLPIQELPLVLVQLTRFQCGGISLSFTISHAVADGPSALHFIFEWARIARREPL 182
+PAVDY+ I L+++Q+T F+CGG+SL + H ADG S LHFI W+ +AR +
Sbjct: 120 IPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV 179
Query: 183 GLPPFLDRKVLQAGEPPVSYPLLDHAEFDHPPLL-----IGQTDNIEERKKKTTVCMLKL 237
LPPF+DR +L+A +PP P H E+ PP L ++D++ E T V + KL
Sbjct: 180 TLPPFIDRTLLRARDPP--QPQFQHIEYQPPPALKVSPQTAKSDSVPE----TAVSIFKL 233
Query: 238 SETQVKKLKNMANEGHCNDIGHPFSRYETVTGHLWRCACKARGHKAEQTTALGVCVDSRS 297
+ Q+ LK + E N I +S YE + GH+WRCACKARG + +Q T L + D R+
Sbjct: 234 TREQISALKAKSKE-DGNTIS--YSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRA 290
Query: 298 RMQPPLPLGYFGNATLDVIALSRSGELVSKPLGYASSKIRRAIVSVTEEYVRSGIEYLKN 357
R++P LP GYFGN ++ +G+L KP+ YA+SKI A+ + +Y+RS ++YL+
Sbjct: 291 RLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLEL 350
Query: 358 QPDLTKF-QDLHALGGDEGPFYGNPNLGVVSWLTLPIYGLDFGWGKEIHMGPGTHDFDGD 416
QPDL + H + PNLG+ SW+ LPI+ DFGWG+ I MGPG ++G
Sbjct: 351 QPDLKALVRGAHT--------FKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGL 402
Query: 417 SLILPNPNEDGGLIVALCLQVCHMEAFKKHFYE 449
S ILP+P DG + VA+ LQ HM+ F+ Y+
Sbjct: 403 SFILPSPTNDGSMSVAISLQGEHMKLFQSFLYD 435
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 338 bits (867), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 185/449 (41%), Positives = 263/449 (58%), Gaps = 21/449 (4%)
Query: 4 VSFKNRCTVKPAEPTYNGILPLSELDQIGTITHIPTIYFYQ-QPSENWLNPSDKVFKTLK 62
+ K V+PA+ T L S +D + H P++YFY+ S N+ + K LK
Sbjct: 8 IEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDA-----KVLK 62
Query: 63 DSLSFALVHFYPLAGRLRWIGRGRLELECNAAGVELVEAESRAKLEDLGDLSPRPEYNYL 122
D+LS ALV FYP+AGRL+ GR+E+ECN GV VEAES ++D GD +P E L
Sbjct: 63 DALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRL 122
Query: 123 VPAVDYTLPIQELPLVLVQLTRFQCGGISLSFTISHAVADGPSALHFIFEWARIARREPL 182
+PAVDY+ I L+++Q+T F+ GG+SL + H ADG S LHFI W+ +AR +
Sbjct: 123 IPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV 182
Query: 183 GLPPFLDRKVLQAGEPPVSYPLLDHAEFDHPP-LLIGQTDNIEERKKKTTVCMLKLSETQ 241
LPPF+DR +L+A +PP P H E+ PP L + + +T V + KL+ Q
Sbjct: 183 TLPPFIDRTLLRARDPP--QPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQ 240
Query: 242 VKKLKNMANEGHCNDIGHPFSRYETVTGHLWRCACKARGHKAEQTTALGVCVDSRSRMQP 301
+ LK + E N I +S YE + GH+WRCACKARG + +Q T L + D R+R++P
Sbjct: 241 ISALKAKSKE-DGNTIS--YSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRP 297
Query: 302 PLPLGYFGNATLDVIALSRSGELVSKPLGYASSKIRRAIVSVTEEYVRSGIEYLKNQPDL 361
LP GYFGN ++ +G+L KP+ YA+SKI A+ + +Y+RS ++YL+ QPDL
Sbjct: 298 SLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDL 357
Query: 362 TKF-QDLHALGGDEGPFYGNPNLGVVSWLTLPIYGLDFGWGKEIHMGPGTHDFDGDSLIL 420
+ H + PNLG+ SW+ LPI+ DFGWG+ I MGPG ++G S IL
Sbjct: 358 KALVRGAHT--------FKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIL 409
Query: 421 PNPNEDGGLIVALCLQVCHMEAFKKHFYE 449
P+P DG + VA+ LQ HM+ F+ Y+
Sbjct: 410 PSPTNDGSMSVAISLQGEHMKLFQSFLYD 438
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 112/425 (26%), Positives = 179/425 (42%), Gaps = 54/425 (12%)
Query: 12 VKPAEPTYNGI--LPLSELDQIGTITHIPTIYFYQQPSENWLNPSDKVFKTLKDSLSFAL 69
+ P+ PT + +S LDQ+ HIP I FY P ++ L+P+ + + LK SLS L
Sbjct: 13 ILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPA-QTSQHLKQSLSKVL 71
Query: 70 VHFYPLAGRLRWIGRGRLELECNAAGVELVEAESRAKL-EDLGDLSPRPEYNYLVPAVDY 128
HFYPLAGR+ ++CN +GV VEA +A+L + + ++ + + +P+ Y
Sbjct: 72 THFYPLAGRIN----VNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAY 127
Query: 129 ---TLPIQELPLVLVQLTRFQCGGISLSFTISHAVADGPSALHFIFEWARIARREPLGLP 185
+ + E + V+++ F+CGG ++ +SH +AD S F+ W R
Sbjct: 128 PGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCR------- 180
Query: 186 PFLDRKVLQAGEPPVSYPLLDHAEFDHPPLLIGQTDNIEERKKKTTVCMLKLSETQVKKL 245
GE + P D A PP + T + E + V +K +K+
Sbjct: 181 ----------GETEIVLPNFDLAARHFPP--VDNTPSPELVPDENVV--MKRFVFDKEKI 226
Query: 246 KNMANEGHCNDIGHPFSRYETVTGHLWRCACKARGHK--AEQTTALGVCVDSRSRMQPPL 303
+ + FSR + V ++W+ K A+ + V+ RSRM PPL
Sbjct: 227 GALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPL 286
Query: 304 PLGYFGN-ATLDVIALSRSGELVSKPLGYASSKIRRAIVSVTEEYVRSGIEYLKNQPDLT 362
P GN ATL A+ + K +R ++ +++ N L
Sbjct: 287 PHYAMGNIATLLFAAVDAEWD---KDFPDLIGPLRTSLEKTEDDH---------NHELLK 334
Query: 363 KFQDLHALGGDEGPFYGNPNLGVVSWLTLPIYGLDFGWGKEIHMGPGTHDFDGDSLILPN 422
L+ L E L SW L Y LDFGWGK + T +L++
Sbjct: 335 GMTCLYELEPQEL-------LSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDT 387
Query: 423 PNEDG 427
+ DG
Sbjct: 388 RSGDG 392
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 181/442 (40%), Gaps = 63/442 (14%)
Query: 37 IPTIYFYQQPSENWLNPSDKVFKTLKDSLSFALVHFYPLAGRLRWIGRGRLELE-CNAAG 95
I ++FY+ P ++ V +K SLS L HFYP G+L + E C G
Sbjct: 42 INNLFFYELPITRS-QFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEG 100
Query: 96 --VELVEAESRAKLEDLGDLSPR--PEYNYLVPAVDYTLPIQE---LPLVLVQLTRFQCG 148
V + AE L +L PR ++ LVP + + + + +PL VQ+T F
Sbjct: 101 DSVAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQ 160
Query: 149 GISLSFTISHAVADGPSALHFIFEWARIARREPLGLPPFLDRKVLQAGEPP-----VSYP 203
GI++ T H + D + F+ W IAR D L G P + YP
Sbjct: 161 GIAIGITNHHCLGDASTRFCFLKAWTSIARSGNN------DESFLANGTRPLYDRIIKYP 214
Query: 204 LLDHAEFDHPPL-----------LIGQTDNIEERKKKTTVCMLKLSETQVKKLKNMANEG 252
+LD A + L G +D + T + +L + + +L +
Sbjct: 215 MLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTL---- 270
Query: 253 HCNDIGHPFSRYETVTGHLWRCACKARGHKAEQTTALGVCVDSRSRMQPPLPLGYFGNAT 312
S + ++W C K+R K + G +D R+RM+PP+P YFGN
Sbjct: 271 ------EYVSSFTVACAYIWSCIAKSRNDKLQ---LFGFPIDRRARMKPPIPTAYFGNCV 321
Query: 313 LDVIALSRSGELVSKPLGYASSKIRRAIVSVTEEYVRSGIEYLKNQPDLTKFQDLHALGG 372
A++++ L+ K ++K+ + T + G+ LK+ D+ F DL + G
Sbjct: 322 GGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGV--LKD--DMESFNDLVSEGM 377
Query: 373 DEGPFYGNPNLGVVSWLT----LPIYGLDFGWGKEIHMGPGTHDFDGDSLILPNPNEDGG 428
++W++ L Y +DFGWGK + + D +G I +
Sbjct: 378 PT----------TMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAISINSCKESNED 427
Query: 429 LIVALCLQVCHMEAFKKHFYED 450
L + +C+ ME F H ++D
Sbjct: 428 LEIGVCISATQMEDF-VHIFDD 448
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 108/442 (24%), Positives = 175/442 (39%), Gaps = 63/442 (14%)
Query: 37 IPTIYFYQQPSENWLNPSDKVFKTLKDSLSFALVHFYPLAGRLRWIGRGRLELE-CNAAG 95
I ++FY+ P ++ V +K SLS L HFYP G+L + E C G
Sbjct: 42 INNLFFYELPITR-SQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEG 100
Query: 96 --VELVEAESRAKLEDLGDLSPR--PEYNYLVPAVDYTLPIQE---LPLVLVQLTRFQCG 148
V + AE L +L PR ++ LVP + + + + +PL VQ+T F
Sbjct: 101 DSVAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQ 160
Query: 149 GISLSFTISHAVADGPSALHFIFEWARIARREPLGLPPFLDRKVLQAGEPP-----VSYP 203
GI++ T H + D + F+ W IAR D L G P + YP
Sbjct: 161 GIAIGITNHHCLGDASTRFCFLKAWTSIARSGNN------DESFLANGTRPLYDRIIKYP 214
Query: 204 LLDHAEFDHPPL-----------LIGQTDNIEERKKKTTVCMLKLSETQVKKLKNMANEG 252
LD A + L G +D + T + +L + + +L +
Sbjct: 215 XLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTL---- 270
Query: 253 HCNDIGHPFSRYETVTGHLWRCACKARGHKAEQTTALGVCVDSRSRMQPPLPLGYFGNAT 312
S + ++W C K+R K + G +D R+R +PP+P YFGN
Sbjct: 271 ------EYVSSFTVACAYIWSCIAKSRNDKLQ---LFGFPIDRRARXKPPIPTAYFGNCV 321
Query: 313 LDVIALSRSGELVSKPLGYASSKIRRAIVSVTEEYVRSGIEYLKNQPDLTKFQDLHALGG 372
A++++ L+ K ++K+ + T + G+ LK+ D F DL + G
Sbjct: 322 GGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGV--LKD--DXESFNDLVSEGX 377
Query: 373 DEGPFYGNPNLGVVSWLT----LPIYGLDFGWGKEIHMGPGTHDFDGDSLILPNPNEDGG 428
+W++ L Y DFGWGK + + D +G I +
Sbjct: 378 PT----------TXTWVSGTPKLRFYDXDFGWGKPKKLETVSIDHNGAISINSCKESNED 427
Query: 429 LIVALCLQVCHMEAFKKHFYED 450
L + +C+ E F H ++D
Sbjct: 428 LEIGVCISATQXEDF-VHIFDD 448
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/423 (25%), Positives = 169/423 (39%), Gaps = 51/423 (12%)
Query: 5 SFKNRCTVKPAEPTYNGI-LPLSELDQIGTITH-IPTIYFYQQPSENWLNPSDKVFKTLK 62
S +C V P+ + + LPL+ D + H I FY+ P + + TLK
Sbjct: 3 SVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRXRRILFYKLPISR-PDFVQTIIPTLK 61
Query: 63 DSLSFALVHFYPLAGRLR----WIGRGRLELECNAAGVELVEAESRAKLEDLGDLSPR-- 116
DSLS L ++ PLAG + W G L V ++ +ES L PR
Sbjct: 62 DSLSLTLKYYLPLAGNVACPQDWSGYPELRY-VTGNSVSVIFSESDXDFNYLIGYHPRNT 120
Query: 117 PEYNYLVP--AVDYTLP-IQELPLVLVQLTRFQCGGISLSFTISHAVADGPSALHFIFEW 173
++ + VP A P +Q P++ +Q+T F GIS+ FT H DG + + F+ W
Sbjct: 121 KDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAW 180
Query: 174 ARIAR----REPLG--LPPFLDRKVLQAGEPPVSYPLLDHAEFDHPPLLIGQTDNIEERK 227
A + + + L PF DR V++ + ++ H +D +
Sbjct: 181 ALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKH---XXKXSDVVTPPD 237
Query: 228 KKTTVCMLKLSETQVKKLKNMANEGHCNDIGHPFSRYETVTGHLWRCACKARGHKAEQTT 287
K + ++ + KLKN+ + H + + ++W C K+ E+
Sbjct: 238 KVRGTFI--ITRHDIGKLKNLVLTRRPK-LTH-VTSFTVTCAYVWTCIIKSEAATGEEID 293
Query: 288 A-----LGVCVDSRSRMQPPLPLGYFGNATLDVIALSRSGELVSKP-LGYASSKIRRAIV 341
G D R++ PPLP YFGNA + +A +R +L K A I AI
Sbjct: 294 ENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIR 353
Query: 342 SVT--EEYVRSGIEYLKNQPDLTKFQDLHALGGDEGPFYGNPNLGVVSWLTLPIYGLDFG 399
EE++ SG + K + + L G + L +Y DFG
Sbjct: 354 KRXKDEEWILSG-SWFKEYDKVDAKRSLSVAGSPK----------------LDLYAADFG 396
Query: 400 WGK 402
WG+
Sbjct: 397 WGR 399
>pdb|1PG7|W Chain W, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
pdb|1PG7|Y Chain Y, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
Length = 210
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 46 PSENWLNPSDKVFKTLKDSLSFALVHFYPLAGRLRWIGRG 85
PS N PS + KT K +L + FYP A R+ W G
Sbjct: 116 PSVNLFPPSSEELKTKKATLVCTITEFYPGAVRVDWKADG 155
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 190 RKVLQAGEPPVSYPLLDHAEFDHPPLLIGQTDNIEERKKKTT 231
RKV+ + + P D EF HP L GQ +E K+K T
Sbjct: 81 RKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVT 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,846,827
Number of Sequences: 62578
Number of extensions: 662602
Number of successful extensions: 1671
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1637
Number of HSP's gapped (non-prelim): 10
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)