BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036317
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V0D|A Chain A, Crystal Structure Of Caspase-Activated Dnase (Cad)
Length = 329
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 5 IFSDGGDVSDANEVKLSNDGRLMLLT---TLEGHIHVLHSFQGTLPVSHNSTLEASFSQ 60
++ DG +V+D L ND L+LLT T G++ + F H ++A+ Q
Sbjct: 51 LYEDGTEVTDDCFPGLPNDAELLLLTAGETWHGYVSDITRFLSVFNEPHAGVIQAARQQ 109
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 41 SFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKE 95
S + PVS E +HL L A + + V G+GDG A+ A+SGKE
Sbjct: 467 SLRAMDPVSGKVVWE--HKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519
>pdb|4E98|A Chain A, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
pdb|4E98|B Chain B, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
pdb|4E98|C Chain C, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
Length = 138
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ 43
I+ G V D NEV L L TTL+ + +HS++
Sbjct: 74 IYKFKGQVHDENEVMLLVKTTSQLFTTLKEKVTEIHSYE 112
>pdb|1MHP|H Chain H, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
pdb|1MHP|X Chain X, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
Length = 219
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 34 GHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY-AW---- 88
GH + L S +G +S +++ + Q SL A + + G GDG + W
Sbjct: 55 GHTYYLDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVY--YCTRGFGDGGYFDVWGQGT 112
Query: 89 ----SARSGKEPPVIKWAPGS 105
S+ S K P V AP S
Sbjct: 113 LVTVSSASTKGPSVFPLAPSS 133
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 257 SGSEDNMVYIWNLQT 271
>pdb|3U30|C Chain C, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|F Chain F, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 227
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 29 LTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLI-------LRSWVLEGSG 81
+T G S +G +S +++ ++ Q SL A + L WV++ G
Sbjct: 51 ITPSSGQTDYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARTWLLRWVMDLWG 110
Query: 82 DGSVYAWSARSGKEPPVIKWAPGS 105
G++ S+ S K P V AP S
Sbjct: 111 QGTLVTVSSASTKGPSVFPLAPSS 134
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 257 SGSEDNMVYIWNLQT 271
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 260 SGSEDNLVYIWNLQT 274
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 254 SGSEDNLVYIWNLQT 268
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 250 SGSEDNLVYIWNLQT 264
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 252
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 253 SGSEDNLVYIWNLQT 267
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 257 SGSEDNLVYIWNLQT 271
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 254
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 255 SGSEDNLVYIWNLQT 269
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 260 SGSEDNLVYIWNLQT 274
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 257 SGSEDNLVYIWNLQT 271
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 254 SGSEDNLVYIWNLQT 268
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 271 SGSEDNLVYIWNLQT 285
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 260 SGSEDNLVYIWNLQT 274
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 258
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 259 SGSEDNLVYIWNLQT 273
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 257 SGSEDNLVYIWNLQT 271
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 278 SGSEDNLVYIWNLQT 292
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + W++
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 276 SGSEDNLVYIWNLQT 290
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 27 MLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82
M+ EG + + S+ G L PV + E + + LS + V EGS D
Sbjct: 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTA--GNLVFEGSAD 495
Query: 83 GSVYAWSARSGKE 95
G V A++A +G++
Sbjct: 496 GRVIAYAADTGEK 508
>pdb|3IUB|A Chain A, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(5-
Methylpyridin-2-Ylsulfonyl)-1h-Indole-2-Carboxamide
pdb|3IUB|B Chain B, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(5-
Methylpyridin-2-Ylsulfonyl)-1h-Indole-2-Carboxamide
pdb|3IUE|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(5-
Methoxy-2-(5-Methylpyridin-2-Ylsulfonylcarbamoyl)-1h-
Indol-1-Yl) Acetic Acid
pdb|3IUE|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(5-
Methoxy-2-(5-Methylpyridin-2-Ylsulfonylcarbamoyl)-1h-
Indol-1-Yl) Acetic Acid
pdb|3IVC|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Ylmethoxy)carbonyl)-5-Methoxy-1h-Indol-
1-Yl)acetic Acid
pdb|3IVC|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Ylmethoxy)carbonyl)-5-Methoxy-1h-Indol-
1-Yl)acetic Acid
pdb|3IVG|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Sulfonamido)methyl)-5-Methoxy-1h-Indol-
1-Yl)acetic Acid
pdb|3IVG|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Sulfonamido)methyl)-5-Methoxy-1h-Indol-
1-Yl)acetic Acid
pdb|3IVX|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
(Benzofuran-2-Ylsulfonylcarbamoyl)-5-Methoxy-1h-Indol-
1-Yl)acetic Acid
pdb|3IVX|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
(Benzofuran-2-Ylsulfonylcarbamoyl)-5-Methoxy-1h-Indol-
1-Yl)acetic Acid
pdb|4DDH|A Chain A, Pantothenate Synthetase In Complex With
6-methoxy-1-benzofuran-3-yl Acetic Acid
pdb|4DDH|B Chain B, Pantothenate Synthetase In Complex With
6-methoxy-1-benzofuran-3-yl Acetic Acid
pdb|4DDK|A Chain A, Pantothenate Synthetase In Complex With
1,3-benzodioxole-5-carboxylic Acid
pdb|4DDK|B Chain B, Pantothenate Synthetase In Complex With
1,3-benzodioxole-5-carboxylic Acid
pdb|4DDM|A Chain A, Pantothenate Synthetase In Complex With
2,1,3-benzothiadiazole-5- Carboxylic Acid
pdb|4DDM|B Chain B, Pantothenate Synthetase In Complex With
2,1,3-benzothiadiazole-5- Carboxylic Acid
Length = 301
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 1 GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTL----EGHIHVLHS 41
G +++S GDV+D + R+ML+ T+ EGH+ ++ +
Sbjct: 9 GELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRA 53
>pdb|3COV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.5 Ang Resolution- Apo Form
pdb|3COV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.5 Ang Resolution- Apo Form
pdb|3COW|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution- In
Complex With Sulphonamide Inhibitor 2
pdb|3COW|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution- In
Complex With Sulphonamide Inhibitor 2
pdb|3COY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.05 Ang Resolution- In
Complex With Sulphonamide Inhibitor 3
pdb|3COY|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.05 Ang Resolution- In
Complex With Sulphonamide Inhibitor 3
pdb|3COZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.0 Ang Resolution- In
Complex With Sulphonamide Inhibitor 4
pdb|3COZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.0 Ang Resolution- In
Complex With Sulphonamide Inhibitor 4
pdb|3IMC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.6 Ang Resolution In
Complex With Fragment Compound 5- Methoxyindole,
Sulfate And Glycerol
pdb|3IMC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.6 Ang Resolution In
Complex With Fragment Compound 5- Methoxyindole,
Sulfate And Glycerol
pdb|3IME|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.40 Ang Resolution In
Complex With Fragment Compound
1-Benzofuran-2-Carboxylic Acid
pdb|3IME|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.40 Ang Resolution In
Complex With Fragment Compound
1-Benzofuran-2-Carboxylic Acid
pdb|3IMG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution In A
Ternary Complex With Fragment Compounds 5-Methoxyindole
And 1-Benzofuran-2-Carboxylic Acid
pdb|3IMG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution In A
Ternary Complex With Fragment Compounds 5-Methoxyindole
And 1-Benzofuran-2-Carboxylic Acid
pdb|3IOB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.80 Ang Resolution In
Complex With 5'-deoxy-5'- Thioadenosine
pdb|3IOB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.80 Ang Resolution In
Complex With 5'-deoxy-5'- Thioadenosine
pdb|3IOC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.50 Ang Resolution In
Complex With 5'-Deoxy-5'- (Benzyldisulfanyl)-Adenosine
pdb|3IOC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.50 Ang Resolution In
Complex With 5'-Deoxy-5'- (Benzyldisulfanyl)-Adenosine
pdb|3IOD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.75 Ang Resolution In
Complex With 5'-Deoxy-5'-((3-
Nitrobenzyl)disulfanyl)-Adenosine
pdb|3IOD|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.75 Ang Resolution In
Complex With 5'-Deoxy-5'-((3-
Nitrobenzyl)disulfanyl)-Adenosine
pdb|3IOE|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.95 Ang Resolution In
Complex With 5'-Deoxy-5'-((R)-3,
4-Dihydroxybutylthio)-Adenosine
pdb|3IOE|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.95 Ang Resolution In
Complex With 5'-Deoxy-5'-((R)-3,
4-Dihydroxybutylthio)-Adenosine
Length = 301
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 1 GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTL----EGHIHVLHS 41
G +++S GDV+D + R+ML+ T+ EGH+ ++ +
Sbjct: 10 GELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRA 54
>pdb|2Q0Y|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_295895.1) From Ralstonia Eutropha Jmp134 At 1.80 A
Resolution
Length = 153
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 72 LRSWVLEGSGDGSVYAWSARSGKEP------PVIKWAP 103
R W+L DGS + W G P VI+W P
Sbjct: 40 FRDWLLPRLADGSYFGWVXEEGGAPLAGIGLXVIEWPP 77
>pdb|1MOP|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis
pdb|1MOP|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis
pdb|1N2B|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate,
Higher Occupancy Of Pantoate And Lower Occupancy Of
Ampcpp In Subunit A
pdb|1N2B|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate,
Higher Occupancy Of Pantoate And Lower Occupancy Of
Ampcpp In Subunit A
pdb|1N2E|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate
pdb|1N2E|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate
pdb|1N2G|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp
pdb|1N2G|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp
pdb|1N2H|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate
pdb|1N2H|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate
pdb|1N2I|A Chain A, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate, Different Occupancies Of Pantoyl
Adenylate
pdb|1N2I|B Chain B, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate, Different Occupancies Of Pantoyl
Adenylate
pdb|1N2J|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Pantoate
pdb|1N2J|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Pantoate
pdb|1N2O|A Chain A, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis, Low Occupancy Of Beta-Alanine At The
Pantoate Binding Sites
pdb|1N2O|B Chain B, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis, Low Occupancy Of Beta-Alanine At The
Pantoate Binding Sites
pdb|2A7X|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp
pdb|2A84|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Atp
pdb|2A86|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp And Beta-Alanine
pdb|2A86|B Chain B, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp And Beta-Alanine
pdb|2A88|A Chain A, Crystal Structure Of A Pantothenate Synthetase, Apo
Enzyme In C2 Space Group
pdb|3ISJ|A Chain A, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(Methylsulfonyl)-1h-Indole- 2-Carboxamide
pdb|3ISJ|B Chain B, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(Methylsulfonyl)-1h-Indole- 2-Carboxamide
pdb|3LE8|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.70 Angstrom Resolution In
Complex With 2-
(2-((Benzofuran-2-Carboxamido)methyl)-5-Methoxy-1h-
Indol-1- Yl)acetic Acid
pdb|3LE8|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.70 Angstrom Resolution In
Complex With 2-
(2-((Benzofuran-2-Carboxamido)methyl)-5-Methoxy-1h-
Indol-1- Yl)acetic Acid
Length = 300
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 1 GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTL----EGHIHVLHS 41
G +++S GDV+D + R+ML+ T+ EGH+ ++ +
Sbjct: 9 GELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRA 53
>pdb|2CF7|A Chain A, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|B Chain B, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|C Chain C, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|D Chain D, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|E Chain E, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|F Chain F, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|G Chain G, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|H Chain H, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|I Chain I, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|J Chain J, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|K Chain K, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis.
pdb|2CF7|L Chain L, Asp74ala Mutant Crystal Structure For Dps-Like Peroxide
Resistance Protein Dpr From Streptococcus Suis
Length = 165
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP 47
+F G DVSD ++ND + ++E HI +L + G P
Sbjct: 121 LFQKGFDVSDEEGDSVTNDIFNVAKASIEKHIWMLQAELGQAP 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,494,584
Number of Sequences: 62578
Number of extensions: 125939
Number of successful extensions: 511
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 74
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)