BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036317
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2
SV=1
Length = 313
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 19/107 (17%)
Query: 1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
GPF F D + +K SNDG+L+LL+T G + ++ +F+G T +NS
Sbjct: 182 GPFATFKMQYDRTCEWTALKFSNDGKLILLSTNGGFLRLVDAFKGAVMHTFGGYNNSKAV 241
Query: 53 TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
TLEASF+ +++ GS DG ++ W+ SG + V+
Sbjct: 242 TLEASFTPD-----------SQFIMIGSEDGKIHVWNCESGMKVAVL 277
>sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1
Length = 313
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 19/107 (17%)
Query: 1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
GPF F D + +K SNDG+L+L++T G I ++ +F+G T +NS
Sbjct: 182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAV 241
Query: 53 TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
TLEASF+ +++ GS DG ++ W+ SG + V+
Sbjct: 242 TLEASFTPD-----------SQFIMIGSEDGKIHVWNGESGMKVAVL 277
>sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2
SV=1
Length = 313
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 19/107 (17%)
Query: 1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
GPF F D + +K SNDG+L+L++T G + ++ +F+G T +NS
Sbjct: 182 GPFATFKMQYDRTCEWTALKFSNDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAV 241
Query: 53 TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
TLEA+F+ +++ GS DG ++ W+ SG + V+
Sbjct: 242 TLEATFTPD-----------SQFIMIGSEDGKIHVWNCESGMKVAVL 277
>sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2
SV=1
Length = 313
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 19/107 (17%)
Query: 1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
GPF F D + +K S DG+L+L++T G + ++ +F+G T +NS
Sbjct: 182 GPFATFKMQYDRTCEWTSLKFSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAV 241
Query: 53 TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
TLEASF+ +++ GS DG ++ W+ SG + V+
Sbjct: 242 TLEASFTPD-----------SQFIMIGSEDGKIHVWNCESGMKVAVL 277
>sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1
Length = 313
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 18/83 (21%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVS---HNST----LEASFSQHLSLVALSVL 70
+K SNDG+L+L++T G + VL +F+G + S +N++ LEASF+
Sbjct: 200 LKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASFTPD--------- 250
Query: 71 ILRSWVLEGSGDGSVYAWSARSG 93
+++ GS DG ++ W+A SG
Sbjct: 251 --SQFIMIGSEDGKIHVWNAESG 271
>sp|Q8BFQ4|WDR82_MOUSE WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1
Length = 313
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 19/107 (17%)
Query: 1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNS 52
GPF F D + +K SNDG+L+L++T I ++ +F+G + S
Sbjct: 182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAV 241
Query: 53 TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
TLEASF+ +++ GS DG ++ W+ SG + V+
Sbjct: 242 TLEASFTPD-----------SQFIMIGSEDGKIHVWNGESGIKVAVL 277
>sp|Q6UXN9|WDR82_HUMAN WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1
Length = 313
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 19/107 (17%)
Query: 1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNS 52
GPF F D + +K SNDG+L+L++T I ++ +F+G + S
Sbjct: 182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAV 241
Query: 53 TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
TLEASF+ +++ GS DG ++ W+ SG + V+
Sbjct: 242 TLEASFTPD-----------SQFIMIGSEDGKIHVWNGESGIKVAVL 277
>sp|Q9D565|WDR64_MOUSE WD repeat-containing protein 64 OS=Mus musculus GN=Wdr64 PE=2 SV=2
Length = 1086
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 25 RLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLIL-------RSWVL 77
R++L +EGH+ +L S + H+ E F Q LS A S+ I+ + VL
Sbjct: 826 RVLLAGNVEGHV-ILCSISSFMDPPHD---EKKFKQLLSWRAHSLEIIQVIYVEEKQLVL 881
Query: 78 EGSGDGSVYAWSARSG 93
S DGSV W++ SG
Sbjct: 882 TASIDGSVRIWNSTSG 897
>sp|O95834|EMAL2_HUMAN Echinoderm microtubule-associated protein-like 2 OS=Homo sapiens
GN=EML2 PE=2 SV=1
Length = 649
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 1 GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQ 60
G F I+S+G D +D N V S+DG+L+ G +H+ + P L +
Sbjct: 562 GVFGIWSEGADGTDINAVARSHDGKLLASADDFGKVHLF-----SYPCCQPRALSHKYGG 616
Query: 61 HLSLVA-LSVLILRSWVL-EGSGDGSVYAW 88
H S V ++ L S L G D SV W
Sbjct: 617 HSSHVTNVAFLWDDSMALTTGGKDTSVLQW 646
>sp|P23862|PRIC_ECOLI Primosomal replication protein N'' OS=Escherichia coli (strain K12)
GN=priC PE=1 SV=3
Length = 175
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 27 MLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86
+LL LEG + L Q PVS +TL A F +HL + L L+ +GD
Sbjct: 5 LLLEKLEGQLATLR--QRCAPVSQFATLSARFDRHLFQTRATTL---QACLDEAGDNLAA 59
Query: 87 AWSARSGKEPPVIKW 101
A ++ P + W
Sbjct: 60 LRHAVEQQQLPQVAW 74
>sp|Q6P6T4|EMAL2_RAT Echinoderm microtubule-associated protein-like 2 OS=Rattus
norvegicus GN=Eml2 PE=1 SV=1
Length = 649
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 1 GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQ 60
G F I+ +G D +D N V S+DG L++ G +H+ + P L +
Sbjct: 562 GVFGIWPEGADGTDINAVARSHDGNLLVSADDFGKVHLF-----SYPCCQPRALSHKYGG 616
Query: 61 HLSLVA-LSVLILRSWVL-EGSGDGSVYAW 88
H S V ++ L S VL G D SV W
Sbjct: 617 HSSHVTNVAFLWDDSMVLTTGGKDTSVLQW 646
>sp|B1ANS9|WDR64_HUMAN WD repeat-containing protein 64 OS=Homo sapiens GN=WDR64 PE=2 SV=1
Length = 1081
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 25 RLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLIL-------RSWVL 77
R++L +EGH+ +L + L H+ E F Q LS A S+ I+ + VL
Sbjct: 828 RILLAGNVEGHV-ILCNISSFLDPPHD---EKKFKQLLSWRAHSLEIIQVIYVEEKQVVL 883
Query: 78 EGSGDGSVYAWSARSG 93
S DGSV W A +G
Sbjct: 884 TASIDGSVRLWHALNG 899
>sp|Q7TNG5|EMAL2_MOUSE Echinoderm microtubule-associated protein-like 2 OS=Mus musculus
GN=Eml2 PE=2 SV=1
Length = 649
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 1 GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQ 60
G F I+ +G D +D N V S+DG+L++ G +H+ + P L +
Sbjct: 562 GVFGIWPEGADGTDINAVARSHDGKLLVSADDFGKVHLF-----SYPCCQPRALSHKYGG 616
Query: 61 HLSLVA-LSVLILRSWVL-EGSGDGSVYAW 88
H S V ++ L S L G D SV W
Sbjct: 617 HSSHVTNVAFLWDDSMALTTGGKDTSVLQW 646
>sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1
Length = 328
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ L A + R WV+
Sbjct: 214 VKFSPNGKYILTATLDNTLKLWDYSRGRCL----KTYTGHKNEKYCLFASFSVTGRKWVV 269
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 270 SGSEDNMVYIWNLQT 284
>sp|P41318|LST8_YEAST Target of rapamycin complex subunit LST8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1
SV=1
Length = 303
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 13 SDANEVKLSNDGRLMLLTTLEGHIHV-LHSFQGTLPVSHNSTLEASFSQHL-SLVALSVL 70
S N ++++ND +L+ GH +V L+ + T P ASF H ++ ++S
Sbjct: 33 SQVNRLEITNDKKLL---ATAGHQNVRLYDIRTTNP-----NPVASFEGHRGNVTSVSFQ 84
Query: 71 ILRSWVLEGSGDGSVYAWSARSGKEPPVIK 100
W++ S DG++ W RS P K
Sbjct: 85 QDNRWMVTSSEDGTIKVWDVRSPSIPRNYK 114
>sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2
SV=1
Length = 328
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVL 77
VK S +G+ +L TL+ + + +G T ++ + A + R WV+
Sbjct: 214 VKFSPNGKYILTATLDSTLKLWDYSRGRCL----KTYTGHKNEKYCIFASFSVTGRKWVV 269
Query: 78 EGSGDGSVYAWSARS 92
GS D VY W+ ++
Sbjct: 270 SGSEDNMVYIWNLQT 284
>sp|Q55EI8|Y9956_DICDI Probable serine/threonine-protein kinase DDB_G0268876
OS=Dictyostelium discoideum GN=DDB_G0268876 PE=3 SV=1
Length = 1385
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 61 HLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKWAPG 104
H + +++S + +L GSG G ++ S++ G+E P + +A G
Sbjct: 131 HFTNLSMSSMSNMDEILSGSGGGRIHVLSSKKGEECPALCFAVG 174
>sp|P96667|YDEJ_BACSU Uncharacterized lipoprotein YdeJ OS=Bacillus subtilis (strain 168)
GN=ydeJ PE=4 SV=1
Length = 219
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 35 HIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89
++V H G P++ N AS+ ++++ +A S L+ S G+GDG+++ ++
Sbjct: 116 ELNVRHIAAGE-PINPNDDTSASYPENVTQLAGSRLVDGSVTYHGNGDGTIHVYN 169
>sp|Q8C0J2|A16L1_MOUSE Autophagy-related protein 16-1 OS=Mus musculus GN=Atg16l1 PE=1 SV=1
Length = 607
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 74 SWVLEGSGDGSVYAWSARSGKEPPV-----------IKWAPGSL 106
S+V GS +GS+Y WS +GK V + WAP L
Sbjct: 547 SYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGL 590
>sp|B1JBP7|LPXB_PSEPW Lipid-A-disaccharide synthase OS=Pseudomonas putida (strain W619)
GN=lpxB PE=3 SV=1
Length = 375
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 23 DGRLMLLTTLEGHIH-VLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLE 78
+GR + LT L+G H L + L S +TLEA + +VA + L W+L+
Sbjct: 242 EGRELPLTLLDGQSHQALAACDAVLIASGTATLEAMLYKRPMVVAYRLAPLTYWILK 298
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,175,103
Number of Sequences: 539616
Number of extensions: 1462073
Number of successful extensions: 4053
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4023
Number of HSP's gapped (non-prelim): 43
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)