Query 036317
Match_columns 106
No_of_seqs 102 out of 1151
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1446 Histone H3 (Lys4) meth 99.8 1E-18 2.2E-23 122.8 11.4 94 1-105 175-287 (311)
2 KOG0271 Notchless-like WD40 re 99.7 1.6E-17 3.5E-22 120.0 8.7 87 7-104 110-211 (480)
3 KOG0271 Notchless-like WD40 re 99.7 2.2E-16 4.7E-21 114.2 8.9 87 7-104 362-462 (480)
4 KOG0279 G protein beta subunit 99.6 1.9E-15 4.1E-20 105.5 8.8 88 7-105 58-160 (315)
5 KOG0279 G protein beta subunit 99.6 6.3E-15 1.4E-19 102.9 10.6 90 5-105 139-245 (315)
6 KOG0263 Transcription initiati 99.6 4.8E-15 1E-19 113.7 9.2 85 10-105 533-631 (707)
7 KOG0266 WD40 repeat-containing 99.6 1.2E-14 2.5E-19 108.8 11.1 85 9-104 200-299 (456)
8 KOG0272 U4/U6 small nuclear ri 99.6 2.5E-15 5.4E-20 109.4 5.9 86 8-104 257-356 (459)
9 KOG0266 WD40 repeat-containing 99.6 4.3E-14 9.4E-19 105.7 12.1 90 5-105 239-346 (456)
10 KOG0286 G-protein beta subunit 99.6 4.6E-14 9.9E-19 99.3 10.8 97 7-103 50-196 (343)
11 KOG0272 U4/U6 small nuclear ri 99.5 1.8E-14 3.9E-19 105.0 7.7 85 9-104 300-398 (459)
12 KOG0263 Transcription initiati 99.5 4.4E-14 9.6E-19 108.4 10.2 101 4-104 443-588 (707)
13 KOG2394 WD40 protein DMR-N9 [G 99.5 2.6E-14 5.5E-19 106.9 8.5 81 12-103 290-384 (636)
14 KOG0318 WD40 repeat stress pro 99.5 9.4E-14 2E-18 103.6 10.6 79 10-99 188-273 (603)
15 KOG0275 Conserved WD40 repeat- 99.5 2.5E-14 5.4E-19 102.3 6.2 85 10-105 211-318 (508)
16 PTZ00421 coronin; Provisional 99.5 3.1E-13 6.7E-18 102.1 11.8 87 8-104 71-179 (493)
17 KOG0265 U5 snRNP-specific prot 99.5 1.3E-13 2.8E-18 97.2 8.8 79 7-96 42-125 (338)
18 PTZ00420 coronin; Provisional 99.5 9.9E-13 2.1E-17 100.7 12.8 88 6-104 68-178 (568)
19 KOG0285 Pleiotropic regulator 99.5 2.6E-13 5.7E-18 97.8 8.6 92 2-104 140-246 (460)
20 KOG0315 G-protein beta subunit 99.5 5.5E-13 1.2E-17 92.4 8.5 75 9-94 212-291 (311)
21 KOG0645 WD40 repeat protein [G 99.4 1.6E-12 3.4E-17 90.8 10.6 84 10-104 59-161 (312)
22 PTZ00421 coronin; Provisional 99.4 2.7E-12 5.9E-17 97.0 12.7 77 7-94 120-201 (493)
23 KOG1407 WD40 repeat protein [F 99.4 7.6E-13 1.6E-17 92.1 8.4 89 7-106 184-285 (313)
24 KOG0291 WD40-repeat-containing 99.4 1.4E-12 3.1E-17 100.6 10.5 76 8-94 346-425 (893)
25 KOG0647 mRNA export protein (c 99.4 2.4E-12 5.3E-17 90.9 10.5 90 3-103 17-123 (347)
26 KOG0315 G-protein beta subunit 99.4 1.7E-12 3.8E-17 89.9 9.5 88 5-104 33-135 (311)
27 KOG0286 G-protein beta subunit 99.4 2.7E-12 5.8E-17 90.5 9.9 85 8-104 141-240 (343)
28 KOG0282 mRNA splicing factor [ 99.4 2.9E-13 6.3E-18 99.9 4.9 90 5-105 207-311 (503)
29 KOG1273 WD40 repeat protein [G 99.4 2.2E-12 4.8E-17 91.9 9.0 80 14-104 25-117 (405)
30 KOG0293 WD40 repeat-containing 99.4 1.9E-12 4.2E-17 94.7 8.4 92 2-104 213-323 (519)
31 cd00200 WD40 WD40 domain, foun 99.4 9.3E-12 2E-16 83.5 11.3 86 8-104 5-104 (289)
32 KOG0284 Polyadenylation factor 99.4 4.1E-12 8.9E-17 92.6 9.9 93 12-104 96-233 (464)
33 KOG0643 Translation initiation 99.4 8E-12 1.7E-16 87.3 10.8 98 7-104 47-201 (327)
34 KOG0283 WD40 repeat-containing 99.4 2.4E-12 5.3E-17 99.4 8.1 83 10-104 265-420 (712)
35 KOG2096 WD40 repeat protein [G 99.3 1.7E-11 3.7E-16 87.5 10.4 91 3-94 77-219 (420)
36 KOG0284 Polyadenylation factor 99.3 3.5E-12 7.6E-17 93.0 7.0 85 9-104 219-317 (464)
37 KOG0316 Conserved WD40 repeat- 99.3 8.3E-12 1.8E-16 86.1 8.3 82 13-105 184-282 (307)
38 KOG0273 Beta-transducin family 99.3 1.5E-11 3.3E-16 90.9 10.2 94 9-104 356-463 (524)
39 KOG1274 WD40 repeat protein [G 99.3 2E-11 4.4E-16 95.6 11.3 100 6-105 132-282 (933)
40 PTZ00420 coronin; Provisional 99.3 2.9E-11 6.4E-16 92.7 11.6 77 8-95 121-201 (568)
41 KOG0289 mRNA splicing factor [ 99.3 1.5E-11 3.3E-16 90.3 9.4 80 14-104 349-443 (506)
42 KOG0293 WD40 repeat-containing 99.3 1.7E-11 3.7E-16 89.8 8.4 88 6-104 263-365 (519)
43 KOG0318 WD40 repeat stress pro 99.3 3.8E-11 8.2E-16 89.9 10.3 81 14-105 445-542 (603)
44 KOG0645 WD40 repeat protein [G 99.3 6.8E-11 1.5E-15 82.7 10.6 89 5-104 7-116 (312)
45 KOG0273 Beta-transducin family 99.3 4.7E-11 1E-15 88.4 10.3 86 8-104 272-412 (524)
46 KOG0283 WD40 repeat-containing 99.3 1.2E-11 2.6E-16 95.6 7.5 85 9-104 366-462 (712)
47 KOG0316 Conserved WD40 repeat- 99.3 2.6E-11 5.6E-16 83.7 8.3 86 9-105 14-113 (307)
48 KOG1446 Histone H3 (Lys4) meth 99.3 8.5E-11 1.8E-15 83.2 10.9 93 12-104 14-151 (311)
49 KOG0295 WD40 repeat-containing 99.3 5.7E-11 1.2E-15 85.7 10.1 83 11-104 276-387 (406)
50 KOG0288 WD40 repeat protein Ti 99.3 4.4E-11 9.4E-16 87.4 9.1 81 13-104 342-442 (459)
51 KOG0302 Ribosome Assembly prot 99.2 3.4E-11 7.4E-16 87.3 8.0 85 9-104 254-358 (440)
52 KOG0296 Angio-associated migra 99.2 1E-10 2.2E-15 84.4 10.3 87 7-104 59-159 (399)
53 KOG0269 WD40 repeat-containing 99.2 5.7E-11 1.2E-15 91.9 9.3 82 13-105 177-275 (839)
54 KOG0643 Translation initiation 99.2 1.1E-10 2.4E-15 81.7 9.6 86 8-104 6-104 (327)
55 KOG0292 Vesicle coat complex C 99.2 4.7E-11 1E-15 93.9 8.2 87 7-104 46-146 (1202)
56 cd00200 WD40 WD40 domain, foun 99.2 4.3E-10 9.4E-15 75.4 12.0 84 10-104 133-230 (289)
57 KOG1063 RNA polymerase II elon 99.2 6.8E-11 1.5E-15 90.7 8.3 76 7-93 567-650 (764)
58 KOG0295 WD40 repeat-containing 99.2 1.6E-10 3.5E-15 83.4 9.6 103 2-104 225-345 (406)
59 KOG0319 WD40-repeat-containing 99.2 4.9E-11 1.1E-15 91.9 7.2 77 7-94 458-538 (775)
60 PLN00181 protein SPA1-RELATED; 99.2 2.7E-10 5.9E-15 90.1 11.5 83 10-103 481-585 (793)
61 KOG0640 mRNA cleavage stimulat 99.2 1E-10 2.2E-15 83.5 8.0 87 6-103 210-315 (430)
62 KOG0285 Pleiotropic regulator 99.2 1.6E-10 3.4E-15 83.6 8.9 85 10-105 233-331 (460)
63 KOG1539 WD repeat protein [Gen 99.2 9.8E-11 2.1E-15 91.2 8.4 75 8-93 572-650 (910)
64 KOG0973 Histone transcription 99.2 1E-10 2.2E-15 92.6 8.4 88 6-104 123-230 (942)
65 KOG0973 Histone transcription 99.2 1.7E-10 3.7E-15 91.4 9.3 88 6-104 63-182 (942)
66 KOG0278 Serine/threonine kinas 99.2 4.4E-10 9.6E-15 78.3 10.3 98 7-104 138-278 (334)
67 PF08662 eIF2A: Eukaryotic tra 99.2 7.8E-10 1.7E-14 74.5 11.2 82 13-105 60-155 (194)
68 KOG0772 Uncharacterized conser 99.2 8.6E-11 1.9E-15 88.0 7.0 80 14-104 319-420 (641)
69 PLN00181 protein SPA1-RELATED; 99.2 7.1E-10 1.5E-14 87.7 12.3 85 8-103 571-671 (793)
70 KOG0264 Nucleosome remodeling 99.1 4.3E-10 9.4E-15 82.5 9.5 75 8-92 268-348 (422)
71 KOG0291 WD40-repeat-containing 99.1 5.6E-10 1.2E-14 86.6 10.4 91 3-104 383-531 (893)
72 KOG0313 Microtubule binding pr 99.1 3.1E-10 6.8E-15 82.3 8.2 86 7-104 255-356 (423)
73 KOG1539 WD repeat protein [Gen 99.1 6.4E-10 1.4E-14 86.8 10.4 84 10-104 491-628 (910)
74 KOG0296 Angio-associated migra 99.1 5.4E-10 1.2E-14 80.7 9.3 84 5-99 99-228 (399)
75 KOG0265 U5 snRNP-specific prot 99.1 2.5E-10 5.3E-15 80.8 7.3 89 5-104 209-319 (338)
76 KOG0267 Microtubule severing p 99.1 9.7E-11 2.1E-15 90.3 5.6 88 6-104 148-249 (825)
77 KOG0282 mRNA splicing factor [ 99.1 1.8E-10 3.9E-15 85.4 6.8 84 10-103 256-352 (503)
78 KOG0289 mRNA splicing factor [ 99.1 8E-10 1.7E-14 81.4 10.1 84 10-104 301-400 (506)
79 KOG0319 WD40-repeat-containing 99.1 6.2E-10 1.3E-14 85.9 9.7 77 7-94 500-580 (775)
80 KOG0772 Uncharacterized conser 99.1 2E-10 4.4E-15 86.0 6.9 89 6-105 262-376 (641)
81 KOG0278 Serine/threonine kinas 99.1 4.1E-10 9E-15 78.4 8.0 71 13-94 225-300 (334)
82 KOG0640 mRNA cleavage stimulat 99.1 3.4E-10 7.4E-15 80.8 7.7 75 9-94 258-338 (430)
83 KOG0276 Vesicle coat complex C 99.1 4.4E-10 9.5E-15 85.9 8.5 91 2-103 173-279 (794)
84 KOG0275 Conserved WD40 repeat- 99.1 3.4E-10 7.4E-15 81.4 7.4 74 10-94 304-381 (508)
85 KOG1034 Transcriptional repres 99.1 3.2E-10 6.9E-15 81.1 6.9 77 7-94 130-214 (385)
86 KOG0305 Anaphase promoting com 99.1 7.4E-10 1.6E-14 83.3 8.4 88 8-105 297-399 (484)
87 KOG1009 Chromatin assembly com 99.1 6.7E-10 1.4E-14 81.1 7.6 85 8-103 61-175 (434)
88 KOG1036 Mitotic spindle checkp 99.1 2.5E-09 5.3E-14 75.8 9.8 90 3-104 3-105 (323)
89 KOG0264 Nucleosome remodeling 99.0 1.4E-09 2.9E-14 79.9 8.5 87 9-105 224-328 (422)
90 KOG0268 Sof1-like rRNA process 99.0 5.8E-10 1.3E-14 80.7 6.2 74 10-94 270-348 (433)
91 KOG0277 Peroxisomal targeting 99.0 2.7E-09 5.9E-14 74.4 9.3 88 7-104 142-245 (311)
92 KOG0292 Vesicle coat complex C 99.0 9.1E-10 2E-14 86.8 7.5 78 4-92 85-166 (1202)
93 KOG0306 WD40-repeat-containing 99.0 2.8E-09 6.1E-14 82.7 9.9 82 13-105 509-604 (888)
94 PF08662 eIF2A: Eukaryotic tra 99.0 3.9E-09 8.5E-14 71.1 9.6 74 12-97 100-184 (194)
95 KOG0281 Beta-TrCP (transducin 99.0 8.8E-10 1.9E-14 79.8 6.5 81 9-104 317-411 (499)
96 KOG1274 WD40 repeat protein [G 99.0 3.3E-09 7.1E-14 83.5 9.9 81 14-105 98-200 (933)
97 KOG0647 mRNA export protein (c 99.0 4.4E-09 9.6E-14 74.6 9.4 80 11-99 71-153 (347)
98 KOG2445 Nuclear pore complex c 99.0 4.6E-09 9.9E-14 74.8 9.4 85 10-105 11-124 (361)
99 KOG0305 Anaphase promoting com 99.0 4.2E-09 9.1E-14 79.3 9.5 83 12-105 217-355 (484)
100 KOG1407 WD40 repeat protein [F 99.0 2.4E-09 5.1E-14 74.9 7.4 86 9-104 17-117 (313)
101 KOG0313 Microtubule binding pr 99.0 1.8E-09 3.8E-14 78.4 6.9 81 13-103 301-399 (423)
102 KOG0288 WD40 repeat protein Ti 99.0 2E-09 4.3E-14 78.8 6.9 65 14-89 389-459 (459)
103 KOG0649 WD40 repeat protein [G 99.0 3.9E-09 8.5E-14 73.4 8.0 70 14-94 116-189 (325)
104 KOG0646 WD40 repeat protein [G 99.0 8.2E-09 1.8E-13 76.4 9.8 92 13-104 82-228 (476)
105 KOG2055 WD40 repeat protein [G 98.9 8.5E-09 1.8E-13 76.5 9.2 82 13-105 345-447 (514)
106 KOG0267 Microtubule severing p 98.9 1.1E-09 2.3E-14 84.7 4.6 87 7-104 65-165 (825)
107 KOG0302 Ribosome Assembly prot 98.9 4.3E-09 9.3E-14 76.5 6.9 90 5-105 204-314 (440)
108 KOG0294 WD40 repeat-containing 98.9 1.1E-08 2.4E-13 73.0 8.8 87 5-104 36-138 (362)
109 KOG0281 Beta-TrCP (transducin 98.9 8.4E-09 1.8E-13 74.8 8.0 88 3-105 228-332 (499)
110 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 3E-08 6.5E-13 68.4 10.3 74 16-100 210-288 (300)
111 COG4946 Uncharacterized protei 98.9 1.6E-08 3.5E-13 75.7 9.3 89 10-105 399-496 (668)
112 KOG2919 Guanine nucleotide-bin 98.9 1.7E-08 3.6E-13 72.5 8.9 88 6-104 244-351 (406)
113 KOG0294 WD40 repeat-containing 98.9 1.9E-08 4E-13 71.9 8.8 84 10-104 81-179 (362)
114 KOG2110 Uncharacterized conser 98.9 2.2E-08 4.9E-13 72.5 9.2 78 6-94 167-251 (391)
115 KOG0310 Conserved WD40 repeat- 98.9 2.1E-08 4.5E-13 74.6 9.2 75 9-93 107-186 (487)
116 KOG0303 Actin-binding protein 98.9 5.8E-09 1.3E-13 76.3 6.2 77 7-94 126-206 (472)
117 KOG0308 Conserved WD40 repeat- 98.9 1.8E-08 4E-13 77.2 9.1 74 10-94 169-246 (735)
118 KOG0299 U3 snoRNP-associated p 98.9 1.3E-08 2.9E-13 75.3 8.0 74 10-94 200-277 (479)
119 KOG0306 WD40-repeat-containing 98.9 1.5E-08 3.3E-13 78.8 8.7 87 7-104 545-645 (888)
120 KOG1332 Vesicle coat complex C 98.9 8.3E-09 1.8E-13 71.6 6.4 84 10-104 9-113 (299)
121 KOG0639 Transducin-like enhanc 98.8 4.2E-09 9E-14 79.2 5.0 80 14-104 511-603 (705)
122 KOG0771 Prolactin regulatory e 98.8 1.1E-08 2.5E-13 74.7 7.0 67 16-94 148-218 (398)
123 KOG0310 Conserved WD40 repeat- 98.8 6.8E-08 1.5E-12 71.9 10.1 87 5-103 146-248 (487)
124 KOG0276 Vesicle coat complex C 98.8 6E-08 1.3E-12 74.5 9.9 87 7-103 92-193 (794)
125 TIGR03866 PQQ_ABC_repeats PQQ- 98.8 1.5E-07 3.2E-12 65.0 11.2 80 14-104 32-125 (300)
126 KOG2111 Uncharacterized conser 98.8 7.4E-08 1.6E-12 68.8 9.4 77 7-94 176-259 (346)
127 KOG4283 Transcription-coupled 98.8 2.5E-08 5.4E-13 71.0 6.7 79 5-94 181-279 (397)
128 KOG0322 G-protein beta subunit 98.8 1.5E-08 3.4E-13 71.0 5.7 66 14-90 253-322 (323)
129 KOG0300 WD40 repeat-containing 98.8 3.6E-08 7.8E-13 70.9 7.6 76 7-94 309-389 (481)
130 KOG1273 WD40 repeat protein [G 98.7 2.4E-07 5.2E-12 66.5 10.6 86 9-94 62-186 (405)
131 KOG0270 WD40 repeat-containing 98.7 1.9E-08 4.2E-13 74.2 4.9 72 23-104 191-297 (463)
132 KOG1063 RNA polymerase II elon 98.7 5E-08 1.1E-12 75.3 7.3 88 6-104 519-629 (764)
133 KOG1408 WD40 repeat protein [F 98.7 1.5E-07 3.3E-12 73.4 9.9 82 13-105 597-695 (1080)
134 KOG1538 Uncharacterized conser 98.7 6.6E-08 1.4E-12 75.0 7.8 79 14-104 14-104 (1081)
135 KOG0641 WD40 repeat protein [G 98.7 2E-07 4.3E-12 64.6 9.3 81 13-104 232-330 (350)
136 KOG0274 Cdc4 and related F-box 98.7 1.7E-07 3.6E-12 71.9 9.9 39 8-46 245-283 (537)
137 KOG0268 Sof1-like rRNA process 98.7 9.9E-08 2.2E-12 69.3 8.2 81 14-105 189-327 (433)
138 KOG2096 WD40 repeat protein [G 98.7 2E-07 4.3E-12 67.1 9.5 88 5-104 271-384 (420)
139 KOG2048 WD40 repeat protein [G 98.7 1.7E-07 3.8E-12 72.1 9.8 78 6-94 104-187 (691)
140 KOG1034 Transcriptional repres 98.7 1.1E-07 2.4E-12 68.3 8.2 91 4-104 81-192 (385)
141 PRK01742 tolB translocation pr 98.7 2.5E-07 5.4E-12 68.8 10.4 84 10-104 201-302 (429)
142 KOG0269 WD40 repeat-containing 98.7 1.2E-07 2.6E-12 74.0 8.6 83 13-105 134-232 (839)
143 KOG0641 WD40 repeat protein [G 98.7 2.4E-07 5.2E-12 64.2 9.1 78 3-91 23-119 (350)
144 KOG0771 Prolactin regulatory e 98.7 1.8E-07 4E-12 68.4 8.9 95 10-105 184-336 (398)
145 PF00400 WD40: WD domain, G-be 98.7 1E-07 2.2E-12 47.8 5.3 35 6-40 5-39 (39)
146 KOG1332 Vesicle coat complex C 98.7 4.4E-07 9.6E-12 63.2 10.0 91 6-105 50-161 (299)
147 KOG1523 Actin-related protein 98.7 1.8E-07 4E-12 66.9 8.3 84 12-106 10-113 (361)
148 KOG1524 WD40 repeat-containing 98.7 5.7E-08 1.2E-12 73.6 6.1 97 8-105 100-239 (737)
149 KOG1445 Tumor-specific antigen 98.7 3.5E-08 7.5E-13 76.1 4.7 74 10-94 675-753 (1012)
150 KOG0299 U3 snoRNP-associated p 98.6 2.7E-07 5.8E-12 68.5 8.6 75 10-95 140-236 (479)
151 KOG1445 Tumor-specific antigen 98.6 4.4E-08 9.5E-13 75.6 4.7 82 13-104 628-731 (1012)
152 PRK05137 tolB translocation pr 98.6 7.7E-07 1.7E-11 66.3 11.1 83 11-104 200-300 (435)
153 KOG0277 Peroxisomal targeting 98.6 2.4E-07 5.2E-12 64.8 7.6 74 11-94 103-182 (311)
154 KOG0290 Conserved WD40 repeat- 98.6 5.1E-07 1.1E-11 64.3 9.3 98 8-105 192-347 (364)
155 KOG1963 WD40 repeat protein [G 98.6 3.9E-07 8.5E-12 71.6 9.5 81 14-105 207-304 (792)
156 KOG2110 Uncharacterized conser 98.6 6.1E-07 1.3E-11 65.2 9.6 81 14-105 131-230 (391)
157 KOG0639 Transducin-like enhanc 98.6 2.6E-07 5.7E-12 69.7 7.8 80 13-103 466-561 (705)
158 KOG4283 Transcription-coupled 98.6 4.7E-07 1E-11 64.6 8.5 36 10-45 41-77 (397)
159 KOG0274 Cdc4 and related F-box 98.6 4.8E-07 1E-11 69.4 8.9 72 8-93 327-402 (537)
160 KOG4328 WD40 protein [Function 98.6 2.5E-07 5.4E-12 68.7 6.9 72 9-91 319-399 (498)
161 KOG0270 WD40 repeat-containing 98.6 2.1E-07 4.6E-12 68.7 6.6 87 8-104 239-340 (463)
162 KOG0644 Uncharacterized conser 98.5 6.9E-08 1.5E-12 76.1 3.9 86 8-104 186-285 (1113)
163 PF11768 DUF3312: Protein of u 98.5 1.1E-06 2.4E-11 66.9 10.1 72 12-94 259-332 (545)
164 KOG1310 WD40 repeat protein [G 98.5 4.6E-07 1E-11 69.0 8.0 77 7-92 45-126 (758)
165 KOG0307 Vesicle coat complex C 98.5 1.5E-07 3.1E-12 75.7 5.6 86 9-104 113-217 (1049)
166 KOG0303 Actin-binding protein 98.5 2.2E-07 4.8E-12 68.2 6.0 86 8-103 77-183 (472)
167 KOG1007 WD repeat protein TSSC 98.5 3.3E-07 7.1E-12 65.2 6.6 82 13-105 171-270 (370)
168 KOG0300 WD40 repeat-containing 98.5 2.9E-07 6.3E-12 66.3 6.4 87 7-104 267-368 (481)
169 KOG0321 WD40 repeat-containing 98.5 2.1E-07 4.6E-12 71.5 5.9 74 9-92 97-176 (720)
170 KOG2139 WD40 repeat protein [G 98.5 1.2E-06 2.7E-11 63.8 9.4 87 6-104 190-291 (445)
171 KOG3914 WD repeat protein WDR4 98.5 3.9E-07 8.5E-12 66.5 6.9 76 10-97 149-229 (390)
172 KOG0642 Cell-cycle nuclear pro 98.5 7.6E-07 1.7E-11 67.5 8.6 78 5-94 337-429 (577)
173 PRK03629 tolB translocation pr 98.5 2.6E-06 5.7E-11 63.5 11.4 81 13-104 199-297 (429)
174 KOG2048 WD40 repeat protein [G 98.5 1.1E-06 2.5E-11 67.7 9.5 81 12-104 154-256 (691)
175 KOG1538 Uncharacterized conser 98.5 1.1E-06 2.3E-11 68.5 8.8 87 7-105 48-188 (1081)
176 KOG2106 Uncharacterized conser 98.5 2.2E-06 4.8E-11 64.7 10.0 80 14-105 409-503 (626)
177 KOG0290 Conserved WD40 repeat- 98.5 2.1E-06 4.5E-11 61.2 9.3 73 12-94 150-230 (364)
178 PRK04922 tolB translocation pr 98.5 2.3E-06 4.9E-11 63.8 10.0 82 12-104 203-302 (433)
179 KOG2055 WD40 repeat protein [G 98.5 7.6E-07 1.6E-11 66.3 7.3 70 14-94 305-377 (514)
180 PF00400 WD40: WD domain, G-be 98.4 7E-07 1.5E-11 44.6 4.9 32 47-89 8-39 (39)
181 KOG4378 Nuclear protein COP1 [ 98.4 1.8E-06 3.8E-11 65.2 8.7 81 13-103 165-260 (673)
182 PRK02889 tolB translocation pr 98.4 4.2E-06 9E-11 62.4 10.8 82 12-104 195-294 (427)
183 KOG0307 Vesicle coat complex C 98.4 8.4E-07 1.8E-11 71.4 7.2 81 13-104 65-172 (1049)
184 KOG0646 WD40 repeat protein [G 98.4 2.2E-06 4.7E-11 63.8 8.9 81 12-103 217-329 (476)
185 KOG4378 Nuclear protein COP1 [ 98.4 1.7E-06 3.7E-11 65.3 8.4 85 9-104 205-304 (673)
186 PRK00178 tolB translocation pr 98.4 5.8E-06 1.3E-10 61.3 11.3 81 13-104 199-297 (430)
187 KOG3881 Uncharacterized conser 98.4 3.3E-06 7.3E-11 61.8 9.5 90 2-104 239-342 (412)
188 KOG2394 WD40 protein DMR-N9 [G 98.4 1.3E-06 2.7E-11 66.3 7.2 49 12-60 332-384 (636)
189 COG2319 FOG: WD40 repeat [Gene 98.4 6.9E-06 1.5E-10 57.1 10.4 77 7-94 150-232 (466)
190 PF02239 Cytochrom_D1: Cytochr 98.4 3.2E-06 6.9E-11 62.2 9.0 71 16-97 40-114 (369)
191 PRK03629 tolB translocation pr 98.4 7.2E-06 1.6E-10 61.2 10.9 80 14-104 244-341 (429)
192 KOG0974 WD-repeat protein WDR6 98.4 3.8E-06 8.3E-11 67.2 9.8 71 8-91 171-246 (967)
193 KOG2919 Guanine nucleotide-bin 98.4 1.2E-06 2.5E-11 63.2 6.3 71 22-104 121-218 (406)
194 KOG0642 Cell-cycle nuclear pro 98.4 1.3E-06 2.8E-11 66.2 6.4 75 6-91 288-374 (577)
195 TIGR02800 propeller_TolB tol-p 98.3 1E-05 2.2E-10 59.3 10.9 70 14-94 191-269 (417)
196 KOG2106 Uncharacterized conser 98.3 7.2E-06 1.6E-10 62.0 9.8 82 11-103 446-536 (626)
197 KOG1036 Mitotic spindle checkp 98.3 8.4E-06 1.8E-10 58.2 9.7 86 6-104 88-188 (323)
198 KOG0650 WD40 repeat nucleolar 98.3 7.4E-06 1.6E-10 63.0 9.9 65 5-69 393-460 (733)
199 KOG1188 WD40 repeat protein [G 98.3 6.3E-06 1.4E-10 59.6 9.0 85 10-105 68-177 (376)
200 PRK04792 tolB translocation pr 98.3 1.1E-05 2.4E-10 60.6 10.5 80 14-104 219-316 (448)
201 KOG2321 WD40 repeat protein [G 98.3 5.7E-06 1.2E-10 63.3 8.9 81 12-103 175-281 (703)
202 PRK05137 tolB translocation pr 98.3 1E-05 2.2E-10 60.3 10.2 82 12-104 245-344 (435)
203 KOG1272 WD40-repeat-containing 98.3 2.5E-06 5.4E-11 63.8 6.7 82 10-104 291-390 (545)
204 KOG0308 Conserved WD40 repeat- 98.3 5.9E-06 1.3E-10 63.9 8.8 79 5-94 206-288 (735)
205 KOG1408 WD40 repeat protein [F 98.3 4.3E-06 9.3E-11 65.6 8.1 73 11-94 640-716 (1080)
206 KOG0301 Phospholipase A2-activ 98.3 5.1E-06 1.1E-10 64.4 8.1 73 9-93 176-251 (745)
207 PRK01029 tolB translocation pr 98.3 2.2E-05 4.7E-10 58.8 10.9 81 14-105 328-426 (428)
208 PRK02889 tolB translocation pr 98.2 2.3E-05 5E-10 58.4 10.6 80 14-104 285-381 (427)
209 KOG1523 Actin-related protein 98.2 9.3E-06 2E-10 58.4 8.0 86 9-105 52-158 (361)
210 PRK11028 6-phosphogluconolacto 98.2 3.1E-05 6.7E-10 55.4 10.7 80 14-104 176-284 (330)
211 KOG2445 Nuclear pore complex c 98.2 3.3E-05 7.2E-10 55.4 10.0 74 10-94 57-147 (361)
212 PRK11028 6-phosphogluconolacto 98.2 6.5E-05 1.4E-09 53.7 11.7 81 13-104 35-136 (330)
213 PRK01742 tolB translocation pr 98.2 1.3E-05 2.9E-10 59.6 8.3 77 16-104 336-426 (429)
214 PRK04922 tolB translocation pr 98.2 3.9E-05 8.5E-10 57.2 10.7 80 14-104 293-389 (433)
215 KOG0321 WD40 repeat-containing 98.1 2.7E-05 5.9E-10 60.2 9.1 80 14-104 273-371 (720)
216 KOG4328 WD40 protein [Function 98.1 9.7E-06 2.1E-10 60.5 6.5 84 12-105 279-381 (498)
217 KOG1009 Chromatin assembly com 98.1 3.5E-06 7.7E-11 61.9 4.1 75 9-94 120-198 (434)
218 KOG2315 Predicted translation 98.1 2.8E-05 6.1E-10 59.1 9.0 68 13-91 312-390 (566)
219 KOG1007 WD repeat protein TSSC 98.1 1.4E-05 3E-10 57.0 6.6 71 12-92 214-290 (370)
220 KOG1963 WD40 repeat protein [G 98.1 2.5E-05 5.3E-10 61.8 8.1 73 11-94 250-325 (792)
221 KOG4547 WD40 repeat-containing 98.1 4.8E-05 1E-09 58.0 9.2 82 9-103 99-194 (541)
222 PRK00178 tolB translocation pr 98.0 0.00013 2.9E-09 54.0 11.0 70 14-94 244-322 (430)
223 COG2319 FOG: WD40 repeat [Gene 98.0 0.00014 3E-09 50.5 10.4 83 9-103 195-294 (466)
224 KOG0650 WD40 repeat nucleolar 98.0 1.1E-05 2.3E-10 62.2 5.0 48 47-105 397-453 (733)
225 TIGR02800 propeller_TolB tol-p 98.0 0.00014 3.1E-09 53.3 10.7 69 15-94 280-357 (417)
226 KOG1524 WD40 repeat-containing 98.0 1.7E-05 3.7E-10 60.5 5.8 69 25-106 76-158 (737)
227 PRK04792 tolB translocation pr 98.0 0.00013 2.9E-09 54.8 10.5 70 14-94 263-341 (448)
228 KOG1645 RING-finger-containing 98.0 2.9E-05 6.3E-10 57.4 6.7 75 10-94 191-269 (463)
229 KOG4227 WD40 repeat protein [G 98.0 1.7E-05 3.7E-10 58.7 5.5 82 2-94 46-138 (609)
230 KOG4532 WD40-like repeat conta 97.9 0.00015 3.1E-09 51.5 9.3 79 15-104 161-261 (344)
231 KOG1587 Cytoplasmic dynein int 97.9 0.00013 2.8E-09 56.4 9.9 71 12-93 242-325 (555)
232 COG4946 Uncharacterized protei 97.9 0.00027 5.8E-09 53.6 10.8 85 10-105 357-455 (668)
233 KOG0974 WD-repeat protein WDR6 97.9 7.2E-05 1.6E-09 60.2 8.2 68 16-94 137-208 (967)
234 KOG2139 WD40 repeat protein [G 97.9 0.00015 3.3E-09 53.2 9.1 60 13-72 239-302 (445)
235 KOG0280 Uncharacterized conser 97.9 0.00012 2.7E-09 52.3 8.3 83 11-104 164-264 (339)
236 KOG1272 WD40-repeat-containing 97.9 5.2E-05 1.1E-09 56.9 6.4 71 13-94 252-326 (545)
237 KOG0322 G-protein beta subunit 97.9 7.8E-05 1.7E-09 52.7 6.8 86 9-105 202-305 (323)
238 KOG4497 Uncharacterized conser 97.9 0.00013 2.8E-09 53.1 8.0 80 14-104 50-144 (447)
239 KOG4497 Uncharacterized conser 97.9 0.00012 2.6E-09 53.3 7.9 34 13-46 92-126 (447)
240 KOG0301 Phospholipase A2-activ 97.8 7.4E-05 1.6E-09 58.2 7.0 75 6-94 134-210 (745)
241 PF10282 Lactonase: Lactonase, 97.8 0.00037 8.1E-09 50.6 10.4 70 14-94 246-327 (345)
242 PRK01029 tolB translocation pr 97.8 0.00036 7.8E-09 52.3 10.5 79 15-104 283-381 (428)
243 KOG2111 Uncharacterized conser 97.8 0.00033 7.2E-09 50.5 9.6 64 31-105 156-238 (346)
244 KOG1188 WD40 repeat protein [G 97.7 0.00018 3.9E-09 52.3 7.1 66 25-101 41-112 (376)
245 KOG0649 WD40 repeat protein [G 97.7 0.00048 1E-08 48.4 8.6 74 8-94 152-238 (325)
246 KOG0644 Uncharacterized conser 97.7 3.5E-05 7.6E-10 61.4 3.0 70 7-91 227-300 (1113)
247 KOG1517 Guanine nucleotide bin 97.7 0.00053 1.2E-08 56.1 9.6 80 13-104 1257-1362(1387)
248 KOG4640 Anaphase-promoting com 97.7 0.00037 8E-09 54.0 8.4 70 14-94 22-95 (665)
249 KOG2314 Translation initiation 97.6 0.00038 8.2E-09 53.5 7.7 67 16-94 214-293 (698)
250 PF02239 Cytochrom_D1: Cytochr 97.6 0.00038 8.3E-09 51.3 7.5 66 28-104 10-88 (369)
251 smart00320 WD40 WD40 repeats. 97.6 0.00028 6E-09 32.8 4.5 32 9-40 9-40 (40)
252 PRK04043 tolB translocation pr 97.6 0.0019 4.2E-08 48.4 10.9 70 14-94 234-312 (419)
253 KOG4227 WD40 repeat protein [G 97.6 0.00085 1.8E-08 50.0 8.8 72 12-94 105-182 (609)
254 TIGR02658 TTQ_MADH_Hv methylam 97.6 0.0017 3.7E-08 47.8 10.4 75 14-99 249-338 (352)
255 KOG1310 WD40 repeat protein [G 97.5 0.00048 1E-08 53.0 7.5 74 10-93 91-180 (758)
256 KOG2321 WD40 repeat protein [G 97.5 0.00045 9.7E-09 53.3 7.3 71 14-94 230-305 (703)
257 KOG1587 Cytoplasmic dynein int 97.5 0.00058 1.3E-08 52.9 7.6 75 10-94 396-475 (555)
258 KOG3881 Uncharacterized conser 97.5 0.001 2.2E-08 49.1 8.2 80 14-104 204-301 (412)
259 PRK04043 tolB translocation pr 97.5 0.0034 7.5E-08 47.0 11.2 73 14-94 189-268 (419)
260 KOG1334 WD40 repeat protein [G 97.5 0.00041 8.9E-09 52.5 6.2 78 6-92 136-218 (559)
261 KOG4714 Nucleoporin [Nuclear s 97.5 0.00022 4.9E-09 50.4 4.5 69 14-92 181-255 (319)
262 PF10282 Lactonase: Lactonase, 97.4 0.0033 7.1E-08 45.7 10.6 80 14-104 193-302 (345)
263 PF15492 Nbas_N: Neuroblastoma 97.4 0.0023 5E-08 45.5 9.0 66 17-94 2-76 (282)
264 KOG2041 WD40 repeat protein [G 97.4 0.0018 3.9E-08 51.5 8.8 89 4-103 5-125 (1189)
265 PLN02919 haloacid dehalogenase 97.4 0.0022 4.9E-08 53.0 9.8 69 15-94 806-891 (1057)
266 KOG2695 WD40 repeat protein [G 97.4 0.0005 1.1E-08 50.3 5.4 73 11-94 297-379 (425)
267 KOG1354 Serine/threonine prote 97.3 0.0014 3.1E-08 48.0 7.4 69 14-94 274-362 (433)
268 smart00320 WD40 WD40 repeats. 97.3 0.00056 1.2E-08 31.6 3.8 30 49-89 11-40 (40)
269 KOG1409 Uncharacterized conser 97.3 0.00078 1.7E-08 49.2 5.9 78 6-94 191-273 (404)
270 KOG2314 Translation initiation 97.2 0.0031 6.8E-08 48.7 8.7 81 13-105 250-358 (698)
271 TIGR02658 TTQ_MADH_Hv methylam 97.2 0.0044 9.5E-08 45.6 9.1 68 19-97 52-142 (352)
272 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0028 6E-08 33.4 5.9 30 12-41 11-40 (47)
273 COG2706 3-carboxymuconate cycl 97.0 0.023 4.9E-07 41.6 10.7 80 14-104 90-201 (346)
274 KOG4532 WD40-like repeat conta 97.0 0.023 5E-07 40.6 10.4 79 15-102 206-293 (344)
275 KOG1240 Protein kinase contain 97.0 0.006 1.3E-07 50.8 8.4 70 12-92 1048-1129(1431)
276 KOG3621 WD40 repeat-containing 96.9 0.0035 7.5E-08 49.3 6.6 81 13-104 34-135 (726)
277 COG5354 Uncharacterized protei 96.9 0.0046 1E-07 47.2 7.1 79 14-103 317-409 (561)
278 PF11768 DUF3312: Protein of u 96.9 0.018 4E-07 44.4 10.0 45 50-105 259-311 (545)
279 KOG1832 HIV-1 Vpr-binding prot 96.9 0.0024 5.3E-08 51.9 5.4 91 2-103 1090-1194(1516)
280 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.0048 1E-07 44.9 6.5 62 21-94 1-74 (353)
281 COG2706 3-carboxymuconate cycl 96.8 0.033 7.2E-07 40.8 10.4 67 15-92 147-222 (346)
282 KOG1240 Protein kinase contain 96.8 0.011 2.5E-07 49.2 8.5 72 12-94 1195-1276(1431)
283 KOG0280 Uncharacterized conser 96.7 0.018 3.8E-07 41.5 8.3 68 15-92 124-197 (339)
284 KOG1064 RAVE (regulator of V-A 96.7 0.0022 4.7E-08 55.2 4.2 68 10-94 2334-2401(2439)
285 COG0823 TolB Periplasmic compo 96.7 0.011 2.5E-07 44.4 7.7 68 16-94 241-317 (425)
286 KOG1517 Guanine nucleotide bin 96.6 0.01 2.3E-07 49.0 7.4 69 14-92 1210-1288(1387)
287 PF10313 DUF2415: Uncharacteri 96.6 0.013 2.7E-07 30.3 5.0 31 13-43 1-34 (43)
288 COG5354 Uncharacterized protei 96.6 0.0044 9.5E-08 47.3 4.6 69 14-94 34-119 (561)
289 KOG1334 WD40 repeat protein [G 96.5 0.013 2.9E-07 44.6 7.0 81 12-103 336-446 (559)
290 PLN02919 haloacid dehalogenase 96.5 0.026 5.7E-07 47.0 9.3 70 14-94 741-836 (1057)
291 KOG0882 Cyclophilin-related pe 96.5 0.011 2.3E-07 44.9 6.3 78 8-96 140-236 (558)
292 KOG1354 Serine/threonine prote 96.5 0.004 8.6E-08 45.7 3.9 66 14-91 215-301 (433)
293 KOG2695 WD40 repeat protein [G 96.3 0.0044 9.6E-08 45.5 3.3 73 11-94 251-332 (425)
294 KOG2066 Vacuolar assembly/sort 96.3 0.021 4.6E-07 45.7 7.2 65 24-105 49-124 (846)
295 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.1 2.2E-06 32.4 8.8 75 15-101 2-88 (111)
296 PF07569 Hira: TUP1-like enhan 96.3 0.057 1.2E-06 37.2 8.5 65 18-94 16-98 (219)
297 KOG2315 Predicted translation 96.2 0.1 2.2E-06 40.4 10.3 85 12-104 270-365 (566)
298 KOG2066 Vacuolar assembly/sort 96.2 0.046 9.9E-07 43.9 8.5 75 23-104 82-171 (846)
299 PF08450 SGL: SMP-30/Gluconola 96.2 0.14 3E-06 35.1 10.2 76 14-101 135-232 (246)
300 KOG2079 Vacuolar assembly/sort 96.2 0.03 6.5E-07 46.3 7.6 61 13-84 131-198 (1206)
301 KOG4190 Uncharacterized conser 96.1 0.026 5.6E-07 44.1 6.6 86 4-102 776-870 (1034)
302 KOG3621 WD40 repeat-containing 96.1 0.018 3.8E-07 45.5 5.8 71 11-92 75-155 (726)
303 PF15492 Nbas_N: Neuroblastoma 96.1 0.17 3.7E-06 36.2 10.2 40 7-46 37-77 (282)
304 KOG4190 Uncharacterized conser 96.0 0.0067 1.5E-07 47.2 3.1 82 9-103 732-824 (1034)
305 KOG3914 WD repeat protein WDR4 95.9 0.067 1.5E-06 39.7 7.9 36 47-93 148-183 (390)
306 COG5170 CDC55 Serine/threonine 95.9 0.019 4.1E-07 42.0 4.9 69 14-94 223-312 (460)
307 PF12894 Apc4_WD40: Anaphase-p 95.8 0.038 8.3E-07 29.0 4.7 32 52-95 13-44 (47)
308 KOG4640 Anaphase-promoting com 95.6 0.037 8.1E-07 43.3 5.8 42 5-46 54-96 (665)
309 KOG1064 RAVE (regulator of V-A 95.4 0.057 1.2E-06 47.1 6.5 89 5-94 2245-2369(2439)
310 PRK13616 lipoprotein LpqB; Pro 95.4 0.21 4.5E-06 39.3 9.3 90 14-104 351-458 (591)
311 PRK02888 nitrous-oxide reducta 95.3 0.095 2.1E-06 41.4 7.1 68 14-92 322-405 (635)
312 PF14655 RAB3GAP2_N: Rab3 GTPa 95.3 0.62 1.3E-05 35.2 11.2 96 6-103 301-410 (415)
313 TIGR03300 assembly_YfgL outer 95.2 0.11 2.4E-06 37.8 7.1 27 74-100 321-347 (377)
314 KOG2079 Vacuolar assembly/sort 95.2 0.063 1.4E-06 44.5 6.1 66 24-101 99-170 (1206)
315 PF06977 SdiA-regulated: SdiA- 95.1 0.67 1.5E-05 32.6 10.4 74 7-92 16-95 (248)
316 PF04762 IKI3: IKI3 family; I 95.1 0.18 3.8E-06 41.7 8.4 28 13-40 121-148 (928)
317 KOG1912 WD40 repeat protein [G 95.1 0.25 5.3E-06 40.1 8.8 88 9-103 52-165 (1062)
318 PF08450 SGL: SMP-30/Gluconola 95.0 0.34 7.5E-06 33.1 8.7 67 13-91 86-164 (246)
319 KOG0309 Conserved WD40 repeat- 95.0 0.045 9.8E-07 44.0 4.6 78 6-94 108-191 (1081)
320 COG5170 CDC55 Serine/threonine 95.0 0.11 2.4E-06 38.0 6.2 67 13-91 281-367 (460)
321 KOG4547 WD40 repeat-containing 95.0 0.19 4.2E-06 38.9 7.7 71 23-104 69-155 (541)
322 KOG3617 WD40 and TPR repeat-co 94.9 0.045 9.8E-07 44.7 4.5 67 14-91 61-131 (1416)
323 PF07433 DUF1513: Protein of u 94.8 0.55 1.2E-05 34.1 9.3 73 11-94 161-250 (305)
324 KOG2041 WD40 repeat protein [G 94.8 0.24 5.2E-06 40.0 8.0 87 7-104 66-167 (1189)
325 PF10168 Nup88: Nuclear pore c 94.7 0.62 1.4E-05 37.6 10.3 80 14-102 86-191 (717)
326 PF02897 Peptidase_S9_N: Proly 94.7 0.27 5.9E-06 36.3 7.9 81 14-94 125-213 (414)
327 KOG4714 Nucleoporin [Nuclear s 94.7 0.079 1.7E-06 37.8 4.7 69 10-89 221-316 (319)
328 PF08553 VID27: VID27 cytoplas 94.7 0.26 5.6E-06 40.1 8.1 65 13-90 578-646 (794)
329 PRK02888 nitrous-oxide reducta 94.6 0.36 7.8E-06 38.2 8.6 49 34-94 296-354 (635)
330 PF13360 PQQ_2: PQQ-like domai 94.6 0.081 1.7E-06 35.6 4.5 66 21-98 33-101 (238)
331 PF04053 Coatomer_WDAD: Coatom 94.5 0.18 3.9E-06 38.3 6.5 88 14-104 34-155 (443)
332 TIGR03300 assembly_YfgL outer 94.4 0.26 5.6E-06 35.9 7.1 24 23-46 64-87 (377)
333 KOG1920 IkappaB kinase complex 93.9 0.59 1.3E-05 39.4 8.7 55 13-67 69-126 (1265)
334 KOG0882 Cyclophilin-related pe 93.7 0.29 6.3E-06 37.4 6.2 35 12-46 201-235 (558)
335 PF11715 Nup160: Nucleoporin N 93.6 1.1 2.3E-05 34.6 9.5 66 22-98 156-255 (547)
336 KOG1008 Uncharacterized conser 93.4 0.053 1.1E-06 42.8 2.0 92 2-105 143-255 (783)
337 COG3386 Gluconolactonase [Carb 93.3 1.2 2.6E-05 32.3 8.7 29 14-42 164-193 (307)
338 PF04762 IKI3: IKI3 family; I 93.2 0.91 2E-05 37.7 8.8 66 12-88 75-147 (928)
339 PF07433 DUF1513: Protein of u 93.1 1.3 2.9E-05 32.1 8.7 36 13-48 217-253 (305)
340 PF10647 Gmad1: Lipoprotein Lp 93.1 1.9 4E-05 30.2 9.3 80 14-104 25-122 (253)
341 KOG1275 PAB-dependent poly(A) 92.8 0.18 3.8E-06 41.5 4.1 69 22-94 185-257 (1118)
342 KOG4649 PQQ (pyrrolo-quinoline 92.7 0.63 1.4E-05 33.5 6.4 60 24-94 63-126 (354)
343 PF13360 PQQ_2: PQQ-like domai 92.7 0.73 1.6E-05 30.9 6.6 66 23-99 75-148 (238)
344 COG3391 Uncharacterized conser 92.6 1.9 4.1E-05 31.9 9.2 68 14-93 117-192 (381)
345 KOG1920 IkappaB kinase complex 92.6 1.5 3.4E-05 37.1 9.3 28 13-40 110-137 (1265)
346 COG0823 TolB Periplasmic compo 92.5 1 2.2E-05 34.1 7.7 71 13-94 193-273 (425)
347 PRK10115 protease 2; Provision 92.5 1.9 4.1E-05 34.6 9.5 76 14-94 128-210 (686)
348 KOG1912 WD40 repeat protein [G 92.4 0.75 1.6E-05 37.5 7.1 79 14-94 17-100 (1062)
349 PF10313 DUF2415: Uncharacteri 92.4 0.66 1.4E-05 23.9 4.6 34 52-93 2-35 (43)
350 KOG0309 Conserved WD40 repeat- 92.3 0.4 8.7E-06 38.9 5.5 71 14-94 69-148 (1081)
351 PF08596 Lgl_C: Lethal giant l 92.3 1.8 3.9E-05 32.5 8.8 80 14-94 3-118 (395)
352 PF04053 Coatomer_WDAD: Coatom 92.1 0.94 2E-05 34.5 7.2 55 24-91 117-173 (443)
353 PF07676 PD40: WD40-like Beta 92.1 0.73 1.6E-05 22.4 4.6 21 13-33 9-29 (39)
354 PRK13616 lipoprotein LpqB; Pro 92.0 1.1 2.4E-05 35.3 7.6 50 12-62 447-508 (591)
355 PF04841 Vps16_N: Vps16, N-ter 92.0 4 8.6E-05 30.7 10.3 51 12-62 216-271 (410)
356 COG3204 Uncharacterized protei 91.4 2.1 4.6E-05 31.1 7.8 75 9-94 82-161 (316)
357 PF14583 Pectate_lyase22: Olig 91.3 0.95 2.1E-05 33.9 6.2 66 18-94 41-113 (386)
358 PF00930 DPPIV_N: Dipeptidyl p 91.3 0.83 1.8E-05 33.3 5.9 54 13-67 43-117 (353)
359 PF12657 TFIIIC_delta: Transcr 91.1 3.1 6.7E-05 27.3 8.8 35 52-92 87-122 (173)
360 KOG1409 Uncharacterized conser 90.9 3 6.4E-05 31.1 8.3 73 11-94 113-230 (404)
361 PF06433 Me-amine-dh_H: Methyl 90.6 1.4 3.1E-05 32.5 6.5 74 15-99 240-328 (342)
362 PRK11138 outer membrane biogen 90.4 1.5 3.2E-05 32.3 6.7 25 74-98 336-360 (394)
363 PF10647 Gmad1: Lipoprotein Lp 90.0 3.4 7.4E-05 28.8 7.9 49 14-62 113-177 (253)
364 PRK11138 outer membrane biogen 89.9 2.1 4.5E-05 31.5 7.1 60 24-96 120-183 (394)
365 PF12234 Rav1p_C: RAVE protein 89.7 4.8 0.0001 32.2 9.1 65 13-88 30-101 (631)
366 PF14870 PSII_BNR: Photosynthe 89.7 4.6 9.9E-05 29.3 8.5 66 12-89 144-213 (302)
367 PF02897 Peptidase_S9_N: Proly 89.3 0.66 1.4E-05 34.2 4.1 44 55-104 128-180 (414)
368 KOG2377 Uncharacterized conser 89.2 4 8.6E-05 31.7 8.1 55 11-66 65-127 (657)
369 TIGR02276 beta_rpt_yvtn 40-res 88.9 1.7 3.6E-05 21.1 5.4 25 22-46 1-26 (42)
370 PF04841 Vps16_N: Vps16, N-ter 88.8 8.4 0.00018 28.9 10.1 48 19-66 185-232 (410)
371 KOG4499 Ca2+-binding protein R 87.4 6.7 0.00014 28.0 7.7 78 14-102 159-262 (310)
372 PF07569 Hira: TUP1-like enhan 87.1 0.86 1.9E-05 31.4 3.3 21 74-94 23-43 (219)
373 COG3490 Uncharacterized protei 86.9 3.3 7.2E-05 30.3 6.2 44 19-62 120-173 (366)
374 PF14269 Arylsulfotran_2: Aryl 86.3 5.9 0.00013 28.5 7.3 66 14-90 145-219 (299)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.1 7.1 0.00015 30.4 8.1 26 74-99 473-498 (527)
376 PF11715 Nup160: Nucleoporin N 85.9 2.3 5E-05 32.8 5.4 34 13-46 215-252 (547)
377 KOG1916 Nuclear protein, conta 85.6 2.8 6E-05 35.1 5.7 71 20-91 243-323 (1283)
378 KOG4460 Nuclear pore complex, 85.5 10 0.00022 30.1 8.5 73 14-94 105-201 (741)
379 KOG2444 WD40 repeat protein [G 85.2 2.3 5E-05 29.8 4.5 62 22-94 112-180 (238)
380 COG3391 Uncharacterized conser 84.8 14 0.0003 27.4 9.5 69 15-94 76-151 (381)
381 PF08553 VID27: VID27 cytoplas 84.3 12 0.00025 30.9 8.8 64 27-103 545-628 (794)
382 PF07995 GSDH: Glucose / Sorbo 84.1 11 0.00025 27.3 8.1 46 14-61 3-59 (331)
383 PF14583 Pectate_lyase22: Olig 83.5 16 0.00034 27.6 8.6 65 15-90 285-380 (386)
384 PF06433 Me-amine-dh_H: Methyl 82.9 2.4 5.1E-05 31.4 4.1 67 34-101 17-85 (342)
385 KOG4649 PQQ (pyrrolo-quinoline 82.8 14 0.0003 26.8 7.7 64 19-94 17-84 (354)
386 PF08596 Lgl_C: Lethal giant l 82.6 15 0.00033 27.6 8.3 35 11-46 85-119 (395)
387 PF01731 Arylesterase: Arylest 82.5 3.9 8.5E-05 24.1 4.2 30 13-42 54-84 (86)
388 KOG3617 WD40 and TPR repeat-co 82.1 2.4 5.2E-05 35.3 4.1 79 14-104 17-112 (1416)
389 KOG2114 Vacuolar assembly/sort 81.4 30 0.00065 28.9 10.0 53 12-64 125-185 (933)
390 PF01436 NHL: NHL repeat; Int 80.0 4.4 9.6E-05 18.4 3.6 24 15-38 4-27 (28)
391 smart00564 PQQ beta-propeller 79.6 4.7 0.0001 18.4 3.4 21 75-95 8-28 (33)
392 KOG2395 Protein involved in va 78.4 16 0.00034 28.9 7.3 52 14-66 432-487 (644)
393 PF12234 Rav1p_C: RAVE protein 78.3 19 0.00041 29.0 7.9 67 11-90 71-155 (631)
394 KOG1275 PAB-dependent poly(A) 77.9 9.5 0.00021 32.0 6.2 61 18-89 271-340 (1118)
395 PF03088 Str_synth: Strictosid 77.4 12 0.00027 22.1 6.4 29 34-62 37-68 (89)
396 PF00780 CNH: CNH domain; Int 77.4 17 0.00037 25.0 6.9 60 22-94 5-67 (275)
397 PF15390 DUF4613: Domain of un 76.9 12 0.00026 29.9 6.3 65 17-92 117-187 (671)
398 TIGR03118 PEPCTERM_chp_1 conse 76.4 25 0.00053 26.0 7.4 76 15-91 25-118 (336)
399 COG3386 Gluconolactonase [Carb 76.1 18 0.00038 26.3 6.8 49 13-62 111-174 (307)
400 PF03178 CPSF_A: CPSF A subuni 75.7 19 0.00041 25.7 6.9 64 17-91 132-202 (321)
401 KOG1900 Nuclear pore complex, 75.6 43 0.00094 29.2 9.5 78 5-94 171-276 (1311)
402 PF13570 PQQ_3: PQQ-like domai 75.0 7.5 0.00016 18.9 3.4 21 23-43 20-40 (40)
403 PF01011 PQQ: PQQ enzyme repea 74.4 8.1 0.00018 18.7 3.4 24 76-99 3-26 (38)
404 KOG1916 Nuclear protein, conta 71.7 6.6 0.00014 33.0 3.9 70 14-94 185-269 (1283)
405 TIGR02608 delta_60_rpt delta-6 70.6 15 0.00032 19.8 5.3 19 14-32 2-20 (55)
406 TIGR03032 conserved hypothetic 70.1 36 0.00079 25.2 7.1 77 23-101 212-300 (335)
407 cd00216 PQQ_DH Dehydrogenases 69.3 36 0.00078 26.1 7.4 61 24-96 61-133 (488)
408 TIGR03606 non_repeat_PQQ dehyd 69.0 45 0.00099 25.7 7.8 49 13-61 30-89 (454)
409 PF14761 HPS3_N: Hermansky-Pud 68.0 28 0.0006 24.2 5.9 47 24-81 27-79 (215)
410 TIGR03606 non_repeat_PQQ dehyd 68.0 22 0.00048 27.4 6.0 44 51-105 30-90 (454)
411 cd00216 PQQ_DH Dehydrogenases 66.4 57 0.0012 25.0 8.6 23 75-97 303-325 (488)
412 KOG2444 WD40 repeat protein [G 66.3 29 0.00063 24.4 5.8 60 24-94 70-135 (238)
413 COG5167 VID27 Protein involved 66.3 29 0.00064 27.6 6.3 56 24-91 573-632 (776)
414 KOG2114 Vacuolar assembly/sort 66.2 30 0.00065 28.9 6.5 64 15-89 68-153 (933)
415 PF08728 CRT10: CRT10; InterP 65.7 75 0.0016 26.1 8.6 72 13-90 164-245 (717)
416 KOG1645 RING-finger-containing 65.2 13 0.00027 28.4 4.0 42 51-103 194-245 (463)
417 KOG4499 Ca2+-binding protein R 64.6 50 0.0011 23.7 8.0 46 16-61 215-264 (310)
418 PF14870 PSII_BNR: Photosynthe 61.9 59 0.0013 23.6 7.4 50 12-62 186-244 (302)
419 TIGR02171 Fb_sc_TIGR02171 Fibr 61.8 30 0.00065 29.1 5.9 36 32-67 327-366 (912)
420 TIGR02604 Piru_Ver_Nterm putat 61.7 48 0.001 24.3 6.6 50 13-62 124-195 (367)
421 PF05694 SBP56: 56kDa selenium 61.6 48 0.001 25.7 6.6 80 21-100 138-239 (461)
422 KOG2280 Vacuolar assembly/sort 61.5 42 0.0009 27.7 6.5 49 13-62 84-139 (829)
423 TIGR03075 PQQ_enz_alc_DH PQQ-d 60.5 80 0.0017 24.7 9.1 76 15-98 236-340 (527)
424 PF11635 Med16: Mediator compl 60.3 53 0.0011 26.9 7.0 63 13-86 260-345 (753)
425 KOG1832 HIV-1 Vpr-binding prot 59.0 21 0.00046 30.3 4.6 34 50-94 1101-1134(1516)
426 KOG2395 Protein involved in va 57.6 78 0.0017 25.3 7.2 20 74-94 442-461 (644)
427 COG1770 PtrB Protease II [Amin 57.3 62 0.0013 26.3 6.7 55 14-68 130-191 (682)
428 PF05787 DUF839: Bacterial pro 56.6 37 0.00081 26.6 5.5 17 14-30 437-453 (524)
429 PF14779 BBS1: Ciliary BBSome 56.4 38 0.00082 24.2 5.0 52 25-88 196-255 (257)
430 PF07995 GSDH: Glucose / Sorbo 55.4 69 0.0015 23.2 6.5 63 13-86 253-330 (331)
431 PRK10115 protease 2; Provision 53.8 28 0.00061 28.1 4.5 45 54-104 130-182 (686)
432 PF10584 Proteasome_A_N: Prote 53.6 6.4 0.00014 17.4 0.5 7 20-26 8-14 (23)
433 PF13983 YsaB: YsaB-like lipop 52.9 20 0.00043 20.4 2.6 24 5-28 48-73 (77)
434 PRK13684 Ycf48-like protein; P 52.3 89 0.0019 22.7 7.6 48 13-62 173-226 (334)
435 PF06977 SdiA-regulated: SdiA- 52.1 81 0.0018 22.2 9.7 69 12-91 64-147 (248)
436 PF10214 Rrn6: RNA polymerase 50.9 1.4E+02 0.003 24.5 9.5 77 14-94 147-235 (765)
437 PF10168 Nup88: Nuclear pore c 50.5 46 0.001 27.2 5.2 33 13-45 147-182 (717)
438 TIGR03074 PQQ_membr_DH membran 49.3 1.1E+02 0.0023 25.4 7.1 27 75-101 461-487 (764)
439 KOG3630 Nuclear pore complex, 49.2 38 0.00082 29.4 4.6 67 14-91 157-228 (1405)
440 TIGR03054 photo_alph_chp1 puta 48.9 70 0.0015 20.5 5.6 32 74-105 96-127 (135)
441 COG3490 Uncharacterized protei 48.8 84 0.0018 23.3 5.8 33 14-46 281-314 (366)
442 COG4831 Roadblock/LC7 domain [ 48.1 11 0.00023 22.9 1.1 19 51-69 13-31 (109)
443 KOG3616 Selective LIM binding 47.2 1.1E+02 0.0023 26.1 6.6 51 12-62 14-67 (1636)
444 PF14783 BBS2_Mid: Ciliary BBS 47.1 68 0.0015 19.9 8.7 64 12-86 42-109 (111)
445 KOG1008 Uncharacterized conser 46.2 6.1 0.00013 31.8 -0.2 70 11-91 101-184 (783)
446 TIGR02604 Piru_Ver_Nterm putat 46.1 1.2E+02 0.0025 22.3 8.9 48 14-64 73-137 (367)
447 PF12566 DUF3748: Protein of u 45.6 21 0.00045 22.4 2.1 23 18-40 73-95 (122)
448 PF03178 CPSF_A: CPSF A subuni 45.0 1.1E+02 0.0024 21.7 7.0 65 13-91 89-157 (321)
449 KOG2103 Uncharacterized conser 44.3 1E+02 0.0023 25.8 6.3 35 12-46 35-69 (910)
450 PF15390 DUF4613: Domain of un 44.3 93 0.002 25.2 5.9 50 17-66 343-400 (671)
451 KOG2377 Uncharacterized conser 42.9 1.7E+02 0.0037 23.2 8.5 66 14-91 24-96 (657)
452 KOG4460 Nuclear pore complex, 42.0 1.1E+02 0.0025 24.5 6.0 11 95-105 167-177 (741)
453 PF14655 RAB3GAP2_N: Rab3 GTPa 41.3 58 0.0013 24.8 4.3 30 54-94 311-340 (415)
454 PF12341 DUF3639: Protein of u 41.1 40 0.00086 15.4 3.5 24 14-39 3-26 (27)
455 COG1520 FOG: WD40-like repeat 40.5 1.4E+02 0.0031 21.7 6.4 62 20-94 65-132 (370)
456 PHA02713 hypothetical protein; 40.5 73 0.0016 25.0 4.9 21 74-94 514-536 (557)
457 TIGR03074 PQQ_membr_DH membran 39.8 2.2E+02 0.0047 23.6 8.0 73 24-96 194-283 (764)
458 PF05935 Arylsulfotrans: Aryls 38.9 1.8E+02 0.0039 22.4 8.3 30 54-94 274-304 (477)
459 KOG2109 WD40 repeat protein [G 38.6 23 0.00051 28.8 1.9 35 8-42 311-346 (788)
460 PF05096 Glu_cyclase_2: Glutam 38.4 1.5E+02 0.0032 21.3 7.0 57 25-94 101-160 (264)
461 PF08954 DUF1900: Domain of un 38.2 1.1E+02 0.0023 19.6 5.0 41 53-104 13-67 (136)
462 PF05907 DUF866: Eukaryotic pr 37.7 72 0.0016 20.9 3.9 28 56-94 108-136 (161)
463 KOG1896 mRNA cleavage and poly 37.3 2.3E+02 0.0049 25.1 7.3 63 26-101 1048-1134(1366)
464 PF06739 SBBP: Beta-propeller 37.2 54 0.0012 15.9 3.3 21 14-34 14-34 (38)
465 PHA03098 kelch-like protein; P 36.9 1.7E+02 0.0036 22.5 6.3 24 23-46 389-418 (534)
466 PHA02713 hypothetical protein; 36.1 1.7E+02 0.0038 22.9 6.3 25 22-46 350-379 (557)
467 PF05694 SBP56: 56kDa selenium 35.0 2.2E+02 0.0047 22.2 6.9 33 13-45 312-345 (461)
468 PHA03098 kelch-like protein; P 33.7 1.8E+02 0.0039 22.3 6.1 21 74-94 489-514 (534)
469 PLN02193 nitrile-specifier pro 32.8 2.2E+02 0.0049 21.7 7.7 24 23-46 328-355 (470)
470 PRK13615 lipoprotein LpqB; Pro 32.4 2.6E+02 0.0056 22.3 7.7 47 16-62 337-384 (557)
471 KOG2280 Vacuolar assembly/sort 31.4 3.1E+02 0.0068 23.0 7.6 35 12-46 216-250 (829)
472 PF05096 Glu_cyclase_2: Glutam 31.3 2E+02 0.0043 20.6 8.2 75 14-100 46-127 (264)
473 PF10395 Utp8: Utp8 family; I 30.8 1.1E+02 0.0024 24.9 4.5 29 12-40 129-157 (670)
474 PF13418 Kelch_4: Galactose ox 30.6 76 0.0017 15.6 2.6 21 74-94 14-40 (49)
475 KOG1983 Tomosyn and related SN 30.4 1.7E+02 0.0037 25.0 5.7 21 74-94 247-267 (993)
476 PRK11366 puuD gamma-glutamyl-g 30.3 1.4E+02 0.0031 20.9 4.6 32 74-105 194-225 (254)
477 PF13964 Kelch_6: Kelch motif 29.8 68 0.0015 16.0 2.3 12 83-94 28-39 (50)
478 KOG1897 Damage-specific DNA bi 29.6 3.1E+02 0.0067 23.8 6.9 57 23-92 839-899 (1096)
479 PRK10526 acyl-CoA thioesterase 29.4 53 0.0012 23.4 2.4 25 14-38 260-284 (286)
480 PLN00033 photosystem II stabil 29.2 2.5E+02 0.0055 21.2 8.8 62 13-88 281-353 (398)
481 COG1520 FOG: WD40-like repeat 29.2 2.3E+02 0.0049 20.6 6.7 59 23-94 111-174 (370)
482 PRK13684 Ycf48-like protein; P 29.0 2.3E+02 0.0049 20.6 7.8 49 13-62 215-271 (334)
483 PF08801 Nucleoporin_N: Nup133 28.6 1E+02 0.0022 23.0 3.9 31 13-43 190-220 (422)
484 PRK13613 lipoprotein LpqB; Pro 28.3 3.2E+02 0.0069 22.0 7.2 49 14-62 456-518 (599)
485 COG3211 PhoX Predicted phospha 27.7 82 0.0018 25.3 3.3 29 5-33 546-574 (616)
486 TIGR02171 Fb_sc_TIGR02171 Fibr 27.6 2.2E+02 0.0047 24.3 5.7 32 12-43 349-386 (912)
487 COG1770 PtrB Protease II [Amin 27.3 3.5E+02 0.0077 22.2 8.1 46 53-104 131-184 (682)
488 PF10433 MMS1_N: Mono-function 25.6 1.6E+02 0.0035 22.5 4.6 30 14-43 45-74 (504)
489 COG1946 TesB Acyl-CoA thioeste 25.1 2.8E+02 0.006 20.3 5.4 51 26-87 223-284 (289)
490 KOG1897 Damage-specific DNA bi 24.9 4.7E+02 0.01 22.8 7.2 31 74-104 500-541 (1096)
491 cd01745 GATase1_2 Subgroup of 23.2 2.1E+02 0.0047 18.8 4.3 32 74-105 142-173 (189)
492 cd03444 Thioesterase_II_repeat 23.0 1E+02 0.0022 18.3 2.5 14 19-32 87-100 (104)
493 PF12768 Rax2: Cortical protei 22.8 3E+02 0.0064 19.8 7.7 35 12-46 36-76 (281)
494 PF08801 Nucleoporin_N: Nup133 22.5 1.4E+02 0.003 22.3 3.6 31 62-92 190-220 (422)
495 COG3204 Uncharacterized protei 22.4 3.3E+02 0.0071 20.2 8.2 67 14-91 130-210 (316)
496 CHL00101 trpG anthranilate syn 21.9 2.5E+02 0.0053 18.5 4.6 32 74-105 141-172 (190)
497 KOG3630 Nuclear pore complex, 21.6 4.9E+02 0.011 23.2 6.7 49 14-62 200-255 (1405)
498 PF09910 DUF2139: Uncharacteri 21.5 3.5E+02 0.0076 20.1 5.6 53 28-91 72-137 (339)
499 PLN00033 photosystem II stabil 21.2 3.7E+02 0.0081 20.3 9.1 61 14-88 329-396 (398)
500 COG1499 NMD3 NMD protein affec 20.9 3.7E+02 0.008 20.2 8.1 58 24-92 258-322 (355)
No 1
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1e-18 Score=122.83 Aligned_cols=94 Identities=34% Similarity=0.647 Sum_probs=84.1
Q ss_pred CCceeeecC-CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeec
Q 036317 1 GPFDIFSDG-GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 1 ~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~ 72 (106)
|||..|.+. ....+++.++|||||++|+.++..+.+++.|+.+|.+ ++......+++|+||+
T Consensus 175 gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds---------- 244 (311)
T KOG1446|consen 175 GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS---------- 244 (311)
T ss_pred CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----------
Confidence 799999997 5556999999999999999999999999999999987 2333345789999999
Q ss_pred ccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317 73 RSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 73 ~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~~ 105 (106)
+||++|+.||+|.+|++++|+ ++.|++|+|++
T Consensus 245 -~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 245 -KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred -cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence 999999999999999999998 78999999986
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.6e-17 Score=119.97 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=80.7
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+.||.+.|-+++|+|+|+.|++++.|.++++||..+... .+|.+.+.+++|+||| +.|++|+.|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-----------k~iASG~~d 178 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-----------KKIASGSKD 178 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-----------chhhccccC
Confidence 4568888999999999999999999999999999988776 6788899999999999 999999999
Q ss_pred CcEEEEECCCCC-----------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
|+|++||.++|+ +|.+++|.|-
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPL 211 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence 999999999987 8999999884
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=2.2e-16 Score=114.19 Aligned_cols=87 Identities=21% Similarity=0.412 Sum_probs=79.8
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
+..+|...|+.+.||||++|+++++.|+.|++||..+|+. .+|-+.+..++||.|. +.+++||.|
T Consensus 362 rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs-----------RLlVS~SkD 430 (480)
T KOG0271|consen 362 RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS-----------RLLVSGSKD 430 (480)
T ss_pred hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc-----------cEEEEcCCC
Confidence 3456777999999999999999999999999999999998 5677888899999999 999999999
Q ss_pred CcEEEEECCCCC----------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
.++++||+++.+ .|-+++|+|+
T Consensus 431 sTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 431 STLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred ceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 999999999877 7889999996
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.63 E-value=1.9e-15 Score=105.50 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=79.1
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+.||...|+.+..++||+++++++.|+++++||..+++. .+|...+++++|++|. +.|++||.|
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-----------~qivSGSrD 126 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-----------RQIVSGSRD 126 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCC-----------ceeecCCCc
Confidence 4567777999999999999999999999999999999876 4577788999999999 999999999
Q ss_pred CcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317 83 GSVYAWSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 83 ~~i~~wd~~~~~-----------~v~~i~~sp~~ 105 (106)
.+|++|+...+. +|.|+.|+|+.
T Consensus 127 kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 127 KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 999999987653 89999999984
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.62 E-value=6.3e-15 Score=102.91 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=79.3
Q ss_pred eeecCCC--CCCeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317 5 IFSDGGD--VSDANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWV 76 (106)
Q Consensus 5 ~~~~~~~--~~~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i 76 (106)
.|++..+ ++.|+++.|+|. .-++++++.|+++++||+.+.++ .++.+++..+.+|||| ..+
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG-----------slc 207 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG-----------SLC 207 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC-----------CEE
Confidence 3445333 568999999998 67889999999999999988877 5677888999999999 999
Q ss_pred EEecCCCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317 77 LEGSGDGSVYAWSARSGK---------EPPVIKWAPGS 105 (106)
Q Consensus 77 ~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~~ 105 (106)
++|++||.+++||+..++ .|+++.|+|+.
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR 245 (315)
T ss_pred ecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence 999999999999999988 89999999975
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.60 E-value=4.8e-15 Score=113.66 Aligned_cols=85 Identities=14% Similarity=0.271 Sum_probs=78.2
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
+|-+.|.+++|+|+..|+++++.|+++++||+.+|.. .+|++++.++.|||+| +++++|++|+.|
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G-----------r~LaSg~ed~~I 601 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG-----------RYLASGDEDGLI 601 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC-----------ceEeecccCCcE
Confidence 5567999999999999999999999999999999976 6788999999999999 999999999999
Q ss_pred EEEECCCCC----------CCcEEEeCCCC
Q 036317 86 YAWSARSGK----------EPPVIKWAPGS 105 (106)
Q Consensus 86 ~~wd~~~~~----------~v~~i~~sp~~ 105 (106)
++||+.+|+ .|.++.|+++-
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDG 631 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCC
Confidence 999999987 78888888753
No 7
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.60 E-value=1.2e-14 Score=108.78 Aligned_cols=85 Identities=21% Similarity=0.390 Sum_probs=76.1
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcC-CCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSF-QGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~-~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
.+|...|+.++|+|||+++++++.|+++++||+. .+.. ..|...+.+++|+|++ +.|++|+.|+
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-----------~~i~Sgs~D~ 268 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-----------NLLVSGSDDG 268 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-----------CEEEEecCCC
Confidence 5667799999999999999999999999999994 4344 5678888999999999 9999999999
Q ss_pred cEEEEECCCCC----------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+|++||+++++ .|.+++|+|+
T Consensus 269 tvriWd~~~~~~~~~l~~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGHSDGISGLAFSPD 299 (456)
T ss_pred cEEEEeccCCeEEEeeeccCCceEEEEECCC
Confidence 99999999987 8888888876
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=2.5e-15 Score=109.38 Aligned_cols=86 Identities=14% Similarity=0.247 Sum_probs=79.3
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
+.+|..+|..++|+|+|++|++++.|.+-++||+.++.. .+|...+.+++|.||| ..++||+-|.
T Consensus 257 l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG-----------SL~~tGGlD~ 325 (459)
T KOG0272|consen 257 LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG-----------SLAATGGLDS 325 (459)
T ss_pred hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC-----------ceeeccCccc
Confidence 345567999999999999999999999999999999876 6677888899999999 9999999999
Q ss_pred cEEEEECCCCC----------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
.-+|||+++|. +|-.++|+|+
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPN 356 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCC
Confidence 99999999998 8999999996
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.58 E-value=4.3e-14 Score=105.70 Aligned_cols=90 Identities=18% Similarity=0.341 Sum_probs=80.1
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
...+.+|...|++++|+|+|+.+++++.|++|++||..+++. ..+...+..++|++|+ +++++++
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~-----------~~l~s~s 307 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG-----------NLLVSAS 307 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC-----------CEEEEcC
Confidence 345678889999999999999999999999999999999887 5577788899999999 9999999
Q ss_pred CCCcEEEEECCCCC--------------CCcEEEeCCCC
Q 036317 81 GDGSVYAWSARSGK--------------EPPVIKWAPGS 105 (106)
Q Consensus 81 ~d~~i~~wd~~~~~--------------~v~~i~~sp~~ 105 (106)
.|+.|++||+.+++ ++.++.|+|+-
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence 99999999999887 46888888763
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.57 E-value=4.6e-14 Score=99.28 Aligned_cols=97 Identities=21% Similarity=0.385 Sum_probs=82.7
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeee-------------
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSV------------- 69 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~------------- 69 (106)
.+.+|-++|.++.|++|+++++++++||.+.|||..+... +....+++.|+|+|.|+.+|+..
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 3578888999999999999999999999999999987654 55677889999999999999522
Q ss_pred -----------------------eecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317 70 -----------------------LILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 70 -----------------------~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp 103 (106)
+.-...|+|+|.|.++.+||+++|+ .|-+++++|
T Consensus 130 d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred cccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 0112569999999999999999998 788888888
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.55 E-value=1.8e-14 Score=104.97 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=77.2
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
+||...|.+++|.|||..+++++.|..-+|||+.+|+. .+|...+.++.|||+| ..++|||.|++
T Consensus 300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-----------y~lATgs~Dnt 368 (459)
T KOG0272|consen 300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-----------YHLATGSSDNT 368 (459)
T ss_pred cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc-----------eEEeecCCCCc
Confidence 57777999999999999999999999999999999987 5677888999999999 99999999999
Q ss_pred EEEEECCCCC----------CCcEEEeCCC
Q 036317 85 VYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
++|||++.-+ .|..++|+|.
T Consensus 369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred EEEeeecccccceecccccchhhheEeccc
Confidence 9999999665 7788888884
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.55 E-value=4.4e-14 Score=108.42 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=79.6
Q ss_pred eeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCccee-------------
Q 036317 4 DIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVA------------- 66 (106)
Q Consensus 4 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~------------- 66 (106)
..-.+-||.++|..+.|+||.++|++++.|.++++|...+... .+|..++..+.|+|-|=|+|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 3445678889999999999999999999999999999887665 56667778888888886666
Q ss_pred ------------------eeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 67 ------------------LSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 67 ------------------~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+.+=++..|++|||.|.+|++||+.+|. +|.+++|||.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence 2444555778888888888888887776 7777777773
No 13
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=2.6e-14 Score=106.86 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=74.6
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
.+.|+.++|||||++||+.++|+.++|+|-.+.++ +...+..+.++||||| +||++|++|.-|.|
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG-----------KyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG-----------KYIVTGGEDDLVTV 358 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc-----------cEEEecCCcceEEE
Confidence 34899999999999999999999999999988877 4566778899999999 99999999999999
Q ss_pred EECCCCC----------CCcEEEeCC
Q 036317 88 WSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 88 wd~~~~~----------~v~~i~~sp 103 (106)
|.+..++ +|..++|.|
T Consensus 359 wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 359 WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccceEEEeccccccceeeEeecc
Confidence 9999887 999999998
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.53 E-value=9.4e-14 Score=103.56 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=70.3
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.|..-|+++.|||||+++++++.|+++.+||..+|+. ..|++.+.+++|+||+ +.++|.|.|
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-----------~~~~T~SaD 256 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-----------TQFLTVSAD 256 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-----------ceEEEecCC
Confidence 3445899999999999999999999999999999987 3578899999999999 999999999
Q ss_pred CcEEEEECCCCCCCcEE
Q 036317 83 GSVYAWSARSGKEPPVI 99 (106)
Q Consensus 83 ~~i~~wd~~~~~~v~~i 99 (106)
.+++|||+.+.+.++.+
T Consensus 257 kt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTW 273 (603)
T ss_pred ceEEEEEeeccceEEEe
Confidence 99999999998744433
No 15
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.5e-14 Score=102.34 Aligned_cols=85 Identities=24% Similarity=0.455 Sum_probs=75.3
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------------PVSHNSTLEASFSQHLSLVALSVLILRSWVL 77 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~ 77 (106)
+.++-+.+..|||||+|+++++.||.|.+||..+|++ ......+.+++||.|. ..++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-----------EMlA 279 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-----------EMLA 279 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-----------HHhh
Confidence 4466788999999999999999999999999999987 2244567789999999 9999
Q ss_pred EecCCCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317 78 EGSGDGSVYAWSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 78 t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~~ 105 (106)
+|+.||.|++|.+++|+ .|.|++||.+.
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc
Confidence 99999999999999998 89999998763
No 16
>PTZ00421 coronin; Provisional
Probab=99.51 E-value=3.1e-13 Score=102.12 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=73.9
Q ss_pred cCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317 8 DGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQHLSLVALSVLILRSW 75 (106)
Q Consensus 8 ~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~ 75 (106)
+.+|.+.|.+++|+| +++++++++.|++|++||+.++.. ..+...+..+.|+|++ ..+
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~----------~~i 140 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA----------MNV 140 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC----------CCE
Confidence 567888999999999 899999999999999999876421 3456677889999985 158
Q ss_pred EEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 76 VLEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 76 i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+++++.|++|++||+++++ .|.+++|+|+
T Consensus 141 LaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 9999999999999999876 6889999886
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.50 E-value=1.3e-13 Score=97.18 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=71.1
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
.+.+|+++|..++|+|+|.++++++.|..|.+|+...... ..+.+.++.+.|.+|+ ..|++++.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-----------s~i~S~gt 110 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-----------SHILSCGT 110 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-----------CEEEEecC
Confidence 3568889999999999999999999999999999755433 6788899999999999 99999999
Q ss_pred CCcEEEEECCCCCCC
Q 036317 82 DGSVYAWSARSGKEP 96 (106)
Q Consensus 82 d~~i~~wd~~~~~~v 96 (106)
|.+++.||+++|+.+
T Consensus 111 Dk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRI 125 (338)
T ss_pred CceEEEEecccceee
Confidence 999999999999833
No 18
>PTZ00420 coronin; Provisional
Probab=99.48 E-value=9.9e-13 Score=100.69 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=73.8
Q ss_pred eecCCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCc------------eeccCCCcEEEEEecCCcceeeeeeec
Q 036317 6 FSDGGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGT------------LPVSHNSTLEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~------------~~~~~~~~~~~~fs~d~~~~~~~~~~~ 72 (106)
..+.+|.+.|.+++|+|+ ++++++++.|+.|++||+.++. +..|...+..+.|+|++
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g---------- 137 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN---------- 137 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC----------
Confidence 446778889999999997 7899999999999999987542 13456677889999998
Q ss_pred ccEE-EEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317 73 RSWV-LEGSGDGSVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 73 ~~~i-~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
..+ ++++.|++|++||+++++ .|.+++|+|+
T Consensus 138 -~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd 178 (568)
T PTZ00420 138 -YYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK 178 (568)
T ss_pred -CeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCC
Confidence 765 689999999999999886 6788999885
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.47 E-value=2.6e-13 Score=97.77 Aligned_cols=92 Identities=13% Similarity=0.253 Sum_probs=81.4
Q ss_pred Cceeeec-CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317 2 PFDIFSD-GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWV 76 (106)
Q Consensus 2 ~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i 76 (106)
|+..+.+ .+|-+.|+++++.|-.+++++++.|++++|||+.+|++ .++...+..+.+|+-. .|+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-----------pYl 208 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-----------PYL 208 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-----------ceE
Confidence 3445555 57778999999999999999999999999999999998 5566777789999999 999
Q ss_pred EEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 77 LEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 77 ~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
.++++|+.|+.||++..+ .|.|++.+|.
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT 246 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT 246 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhccccceeEEEecccc
Confidence 999999999999999988 7888888875
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.45 E-value=5.5e-13 Score=92.38 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC-ce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG-TL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~-~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
..|.+-+..+-+|||++||++++.|++++||+..+. +. .++...+..|.||.|| +||+||+.|+
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-----------~YlvTassd~ 280 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG-----------EYLVTASSDH 280 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc-----------cEEEecCCCC
Confidence 445667889999999999999999999999999887 22 4566788899999999 9999999999
Q ss_pred cEEEEECCCCC
Q 036317 84 SVYAWSARSGK 94 (106)
Q Consensus 84 ~i~~wd~~~~~ 94 (106)
.+++||++.++
T Consensus 281 ~~rlW~~~~~k 291 (311)
T KOG0315|consen 281 TARLWDLSAGK 291 (311)
T ss_pred ceeecccccCc
Confidence 99999999998
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.6e-12 Score=90.80 Aligned_cols=84 Identities=18% Similarity=0.342 Sum_probs=75.4
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
+|+..|++++|+|.|++|++++.|.++.||.-.++++ .+|.+.+.+++|+++| .++||++.|+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-----------~~LATCSRDK 127 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-----------NYLATCSRDK 127 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-----------CEEEEeeCCC
Confidence 5667899999999999999999999999999877766 5678888999999999 9999999999
Q ss_pred cEEEEECCCCC-------------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK-------------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~-------------~v~~i~~sp~ 104 (106)
+|-+|++..+. .|.-+.|+|.
T Consensus 128 SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 128 SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred eEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 99999998654 7888899984
No 22
>PTZ00421 coronin; Provisional
Probab=99.44 E-value=2.7e-12 Score=97.03 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=67.6
Q ss_pred ecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 7 SDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
.+.+|...|..++|+|++ +++++++.|++|+|||+.+++. ..+...+..++|+|++ ..+++++.
T Consensus 120 ~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-----------~lLatgs~ 188 (493)
T PTZ00421 120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-----------SLLCTTSK 188 (493)
T ss_pred EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-----------CEEEEecC
Confidence 345677799999999986 6889999999999999998876 3456678889999999 99999999
Q ss_pred CCcEEEEECCCCC
Q 036317 82 DGSVYAWSARSGK 94 (106)
Q Consensus 82 d~~i~~wd~~~~~ 94 (106)
|++|++||+++++
T Consensus 189 Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 189 DKKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEECCCCc
Confidence 9999999999987
No 23
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.44 E-value=7.6e-13 Score=92.08 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=74.5
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+..|....-+++|+|+|+|+|+++.|-.+-|||+..--. +...-++..++||.|| ++|+++|+|
T Consensus 184 si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg-----------~~lASaSED 252 (313)
T KOG1407|consen 184 SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG-----------RMLASASED 252 (313)
T ss_pred ccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc-----------ceeeccCcc
Confidence 4456677888999999999999999999999999865433 3333345679999999 999999999
Q ss_pred CcEEEEECCCCC---------CCcEEEeCCCCC
Q 036317 83 GSVYAWSARSGK---------EPPVIKWAPGSL 106 (106)
Q Consensus 83 ~~i~~wd~~~~~---------~v~~i~~sp~~~ 106 (106)
..|-|=++++|. +...++|+|++.
T Consensus 253 h~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRP 285 (313)
T ss_pred ceEEeEecccCCeEEEeeccCCceeEEecCCCc
Confidence 999999999987 778899999863
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=1.4e-12 Score=100.60 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=65.1
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
-.+|-.+++++++||||+++++++.|+.|+|||..+|.. ..|...++.+.|+..| +.+++.|-||
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-----------~~llssSLDG 414 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-----------NVLLSSSLDG 414 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC-----------CEEEEeecCC
Confidence 345667999999999999999999999999999999876 5577788899999999 8888888888
Q ss_pred cEEEEECCCCC
Q 036317 84 SVYAWSARSGK 94 (106)
Q Consensus 84 ~i~~wd~~~~~ 94 (106)
+|+.||+...+
T Consensus 415 tVRAwDlkRYr 425 (893)
T KOG0291|consen 415 TVRAWDLKRYR 425 (893)
T ss_pred eEEeeeecccc
Confidence 88888877654
No 25
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.43 E-value=2.4e-12 Score=90.92 Aligned_cols=90 Identities=18% Similarity=0.327 Sum_probs=73.8
Q ss_pred ceeeecCCCCC-CeeEEEECCCC-CeEEEEeCCCeEEEEEcCC-Cce-----eccCCCcEEEEEecCCcceeeeeeeccc
Q 036317 3 FDIFSDGGDVS-DANEVKLSNDG-RLMLLTTLEGHIHVLHSFQ-GTL-----PVSHNSTLEASFSQHLSLVALSVLILRS 74 (106)
Q Consensus 3 ~~~~~~~~~~~-~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~-~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~ 74 (106)
-+.|++..... .|..++|||.. ..+++++.|++|++|+++. |.. ..+.+++..++|+.|| .
T Consensus 17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-----------s 85 (347)
T KOG0647|consen 17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-----------S 85 (347)
T ss_pred ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-----------c
Confidence 35567765554 89999999954 4455889999999999886 444 4567788999999999 9
Q ss_pred EEEEecCCCcEEEEECCCCC---------CCcEEEeCC
Q 036317 75 WVLEGSGDGSVYAWSARSGK---------EPPVIKWAP 103 (106)
Q Consensus 75 ~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp 103 (106)
.+++|+.|+++++||+++++ +|+++.|=+
T Consensus 86 kVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred eEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec
Confidence 99999999999999999998 777777743
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.42 E-value=1.7e-12 Score=89.91 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=72.7
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
..++.-..+.|+.++++||++.|++++ ...|++||+.+++. ..+.+-++.+.|..|| ++..|
T Consensus 33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-----------rWMyT 100 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-----------RWMYT 100 (311)
T ss_pred EEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-----------eEEEe
Confidence 344433456899999999999777766 56699999998876 3455678899999999 99999
Q ss_pred ecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317 79 GSGDGSVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
|++||+++|||++... +|+++..+|+
T Consensus 101 gseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpn 135 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPN 135 (311)
T ss_pred cCCCceEEEEeccCcccchhccCCCCcceEEecCC
Confidence 9999999999999855 8888888875
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.41 E-value=2.7e-12 Score=90.46 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=77.7
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEec-CCcceeeeeeecccEEEEecCC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s~d 82 (106)
+.+|.+-++++.|-+|+. +++++.|.+..+||+++|+. .+|.+.+.+++++| ++ +.+++|+.|
T Consensus 141 l~gHtgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~-----------ntFvSg~cD 208 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG-----------NTFVSGGCD 208 (343)
T ss_pred ecCccceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC-----------CeEEecccc
Confidence 567788899999999877 89999999999999999987 56778899999999 89 999999999
Q ss_pred CcEEEEECCCCC----------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
++.++||++++. .|+.++|.|+
T Consensus 209 ~~aklWD~R~~~c~qtF~ghesDINsv~ffP~ 240 (343)
T KOG0286|consen 209 KSAKLWDVRSGQCVQTFEGHESDINSVRFFPS 240 (343)
T ss_pred cceeeeeccCcceeEeecccccccceEEEccC
Confidence 999999999987 8999999986
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.40 E-value=2.9e-13 Score=99.90 Aligned_cols=90 Identities=18% Similarity=0.336 Sum_probs=80.4
Q ss_pred eeecCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCC-Cce----eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 5 IFSDGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQ-GTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~-~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
++...+|...|+++.|-| .+..++++++|+.|+|||+.+ +++ .+|...+.+++|+++| +.+++
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-----------~~fLS 275 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-----------TSFLS 275 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-----------Ceeee
Confidence 466778889999999999 889899999999999999987 444 5677778889999999 99999
Q ss_pred ecCCCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317 79 GSGDGSVYAWSARSGK---------EPPVIKWAPGS 105 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~~---------~v~~i~~sp~~ 105 (106)
+|.|+.+++||+++|+ .+.|++|+|+-
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~ 311 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN 311 (503)
T ss_pred eecceeeeeeccccceEEEEEecCCCceeeecCCCC
Confidence 9999999999999998 88999999973
No 29
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.2e-12 Score=91.86 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=69.8
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
...++.|++-|.++|+++.+|.+.|||..|... ..|..++++++||+|| +.++|+|.|..|.+||
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-----------r~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-----------RKLLTSSRDWSIKLWD 93 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-----------CEeeeecCCceeEEEe
Confidence 478999999999999999999999999998876 4466678899999999 9999999999999999
Q ss_pred CCCCC---------CCcEEEeCCC
Q 036317 90 ARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 90 ~~~~~---------~v~~i~~sp~ 104 (106)
+..|. +|....|+|.
T Consensus 94 l~~gs~l~rirf~spv~~~q~hp~ 117 (405)
T KOG1273|consen 94 LLKGSPLKRIRFDSPVWGAQWHPR 117 (405)
T ss_pred ccCCCceeEEEccCccceeeeccc
Confidence 99998 5555555553
No 30
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=1.9e-12 Score=94.66 Aligned_cols=92 Identities=11% Similarity=0.193 Sum_probs=78.0
Q ss_pred Cceeeec-CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce------eccCCCcEEEEEecCCcceeeeeeecc
Q 036317 2 PFDIFSD-GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL------PVSHNSTLEASFSQHLSLVALSVLILR 73 (106)
Q Consensus 2 ~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~ 73 (106)
|++.+++ ..|..+|.-+.||++|+|+|+++.|.+.-+|++.. .++ .++..++..+.||||.
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd----------- 281 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD----------- 281 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-----------
Confidence 4555665 45667999999999999999999999999998653 332 4577788889999999
Q ss_pred cEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
+++++++.|..+.+||+.+|. .+.+.+|.|+
T Consensus 282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD 323 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD 323 (519)
T ss_pred CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC
Confidence 999999999999999999997 6778888886
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.39 E-value=9.3e-12 Score=83.51 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=73.4
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
+.+|.++|.+++|+|+++++++++.++.+.+||..+++. ..+...+..+.|+|++ +++++++.|+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~l~~~~~~~ 73 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-----------TYLASGSSDK 73 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-----------CEEEEEcCCC
Confidence 346788999999999999999999999999999987754 3344555689999999 9999999999
Q ss_pred cEEEEECCCCC----------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
.|++||+++++ .+.++.|+|+
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 104 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPD 104 (289)
T ss_pred eEEEEEcCcccceEEEeccCCcEEEEEEcCC
Confidence 99999999864 5778888874
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.39 E-value=4.1e-12 Score=92.60 Aligned_cols=93 Identities=19% Similarity=0.306 Sum_probs=65.0
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCccee---------------------
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVA--------------------- 66 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~--------------------- 66 (106)
+..|+.|.|.|+|+.|++++..|++.||+..+... ..|...+..+.|++++.|++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 34677777777777777777777777777755443 33444455667777776655
Q ss_pred ----------eeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 67 ----------LSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 67 ----------~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+++.+....++|+|+|++|+|||....+ .|++++|+|.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~ 233 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT 233 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc
Confidence 2334444778888888888888887665 7888888885
No 33
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.38 E-value=8e-12 Score=87.33 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=80.6
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--ec-cCCCcEEEEEecCCcceeee---------------
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PV-SHNSTLEASFSQHLSLVALS--------------- 68 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~-~~~~~~~~~fs~d~~~~~~~--------------- 68 (106)
+..||.+.|.+++.+-+.+++++++.|.+++|||+.+|++ .- ...++..+.|+++|+++++.
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fd 126 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFD 126 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEE
Confidence 3467889999999999999999999999999999999998 22 23345678889888888731
Q ss_pred ----------------------------eeecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317 69 ----------------------------VLILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 69 ----------------------------~~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
|-.+.++|++|.+||.|.+||+++|+ .|+.++++|+
T Consensus 127 i~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 127 IRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred ccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence 12333789999999999999999986 7888888886
No 34
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=2.4e-12 Score=99.38 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=66.5
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------------------------------------------
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------------------------------------------- 46 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------------------------------------------- 46 (106)
.|.+.|.+++||+||+|||+++.|+.|+||.+...+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6778999999999999999999999999998765100
Q ss_pred ---------------------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------CC
Q 036317 47 ---------------------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------EP 96 (106)
Q Consensus 47 ---------------------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v 96 (106)
.+|.+.+++++||.+ .+|+++|-|.+|+||++...+ -|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn------------~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfV 412 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN------------NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFV 412 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC------------CeeEeccccccEEeecCCCcceeeEEecCCee
Confidence 122333444555544 699999999999999999766 89
Q ss_pred cEEEeCCC
Q 036317 97 PVIKWAPG 104 (106)
Q Consensus 97 ~~i~~sp~ 104 (106)
.||+|+|.
T Consensus 413 TcVaFnPv 420 (712)
T KOG0283|consen 413 TCVAFNPV 420 (712)
T ss_pred EEEEeccc
Confidence 99999995
No 35
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.7e-11 Score=87.53 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=70.9
Q ss_pred ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeee-----
Q 036317 3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSV----- 69 (106)
Q Consensus 3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~----- 69 (106)
.+.-.+.+|.+.|++++||.||+++++.+.|+.|++|+..+.+. ....+.++.+.|+||-+-+...+
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 34455678889999999999999999999999999999987654 12334567789999855544211
Q ss_pred ---------------------------------------eecccEEEEecCCCcEEEEECCCCC
Q 036317 70 ---------------------------------------LILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 70 ---------------------------------------~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
....++|++++.|..|.+|+++ |+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 2223789999999999999999 76
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.34 E-value=3.5e-12 Score=92.96 Aligned_cols=85 Identities=21% Similarity=0.347 Sum_probs=77.1
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
.+|.-.|.+++|+|..-.+++++.|+.|++||.++|.. ..++..++.+.|.|++ .+++|+|+|..
T Consensus 219 ~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-----------N~Llt~skD~~ 287 (464)
T KOG0284|consen 219 RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-----------NWLLTGSKDQS 287 (464)
T ss_pred ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-----------CeeEEccCCce
Confidence 56666999999999999999999999999999999987 5677888999999999 99999999999
Q ss_pred EEEEECCCCC----------CCcEEEeCCC
Q 036317 85 VYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
++++|+++.+ .+.++.|+|-
T Consensus 288 ~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred EEEEehhHhHHHHHhhcchhhheeeccccc
Confidence 9999999655 8899999884
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=8.3e-12 Score=86.13 Aligned_cols=82 Identities=26% Similarity=0.397 Sum_probs=70.5
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCC--CcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHN--STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~--~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
.+|+++.||+||++.++++.++++++.|-.+|++ .++.+ +-..|++.... ..+++||+||.|+
T Consensus 184 ~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd-----------thV~sgSEDG~Vy 252 (307)
T KOG0316|consen 184 HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD-----------THVFSGSEDGKVY 252 (307)
T ss_pred CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc-----------eeEEeccCCceEE
Confidence 4899999999999999999999999999999998 44443 33568889888 9999999999999
Q ss_pred EEECCCCC-----------CCcEEEeCCCC
Q 036317 87 AWSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 87 ~wd~~~~~-----------~v~~i~~sp~~ 105 (106)
+||+.++. .+..++++|+-
T Consensus 253 ~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 253 FWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred EEEeccceeeeeeccCCceeEEeeecccCc
Confidence 99999876 36788888863
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.33 E-value=1.5e-11 Score=90.91 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=76.0
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
.+|+++|+.++|+|.|..|++++.|++++||+...+.. ..|...+..+.|+|+|.- ....--...+++++.|++
T Consensus 356 ~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v--~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 356 IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV--TSNPNMNLMLASASFDST 433 (524)
T ss_pred ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc--cCCCcCCceEEEeecCCe
Confidence 36788999999999999999999999999999765544 556677888999999711 011111146899999999
Q ss_pred EEEEECCCCC----------CCcEEEeCCC
Q 036317 85 VYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
|++||++.|. +|-.++|+|+
T Consensus 434 V~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred EEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 9999999997 8889999986
No 39
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2e-11 Score=95.60 Aligned_cols=100 Identities=12% Similarity=0.257 Sum_probs=82.7
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------e---cc-CCCcEEEEEecC-Cccee------
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------P---VS-HNSTLEASFSQH-LSLVA------ 66 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~---~~-~~~~~~~~fs~d-~~~~~------ 66 (106)
..+.+++++|.++.|+|.+++||+++-||.+++||+.++.+ + .. ...+..++|+|+ |+|++
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 45678889999999999999999999999999999998876 1 11 223456899999 66666
Q ss_pred --------------------------eeeeecccEEEEecCCCcEEEEECCC------CCCCcEEEeCCCC
Q 036317 67 --------------------------LSVLILRSWVLEGSGDGSVYAWSARS------GKEPPVIKWAPGS 105 (106)
Q Consensus 67 --------------------------~~~~~~~~~i~t~s~d~~i~~wd~~~------~~~v~~i~~sp~~ 105 (106)
+.|.++.+|||++.-||.|.|||.++ ...|.|++|.|+-
T Consensus 212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNA 282 (933)
T ss_pred EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCC
Confidence 36677779999999999999999994 3399999999874
No 40
>PTZ00420 coronin; Provisional
Probab=99.32 E-value=2.9e-11 Score=92.68 Aligned_cols=77 Identities=3% Similarity=-0.076 Sum_probs=65.6
Q ss_pred cCCCCCCeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 8 DGGDVSDANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
+.+|...|.+++|+|++..+ ++++.|++++|||+.+++. ..+...+.+++|+|+| ..+++++.|+
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG-----------~lLat~s~D~ 189 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG-----------NLLSGTCVGK 189 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC-----------CEEEEEecCC
Confidence 34667799999999999876 5778999999999998875 2244567789999999 9999999999
Q ss_pred cEEEEECCCCCC
Q 036317 84 SVYAWSARSGKE 95 (106)
Q Consensus 84 ~i~~wd~~~~~~ 95 (106)
.|++||+++++.
T Consensus 190 ~IrIwD~Rsg~~ 201 (568)
T PTZ00420 190 HMHIIDPRKQEI 201 (568)
T ss_pred EEEEEECCCCcE
Confidence 999999999873
No 41
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.32 E-value=1.5e-11 Score=90.31 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=71.3
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
++++.+|+|||..+.+++.|+.+++||+..+.. ++|.+++.+++|+.+| -|++++.+|+.|++||
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-----------Y~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-----------YWLATAADDGSVKLWD 417 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-----------eEEEEEecCCeEEEEE
Confidence 689999999999999999999999999987654 7788899999999999 9999999999999999
Q ss_pred CCCCC-----------CCcEEEeCCC
Q 036317 90 ARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 90 ~~~~~-----------~v~~i~~sp~ 104 (106)
++.-+ .+..+.|.+.
T Consensus 418 LRKl~n~kt~~l~~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 418 LRKLKNFKTIQLDEKKEVNSLSFDQS 443 (506)
T ss_pred ehhhcccceeeccccccceeEEEcCC
Confidence 98765 4777777653
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=1.7e-11 Score=89.77 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=73.9
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
+++.+|..+|..+.||||.+|+++.+.+.-+.+||+.+|.. .+...++.+|+|.||| ..+++|+
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-----------~~~V~Gs 331 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-----------FRFVTGS 331 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-----------ceeEecC
Confidence 45678888999999999999999999999999999999987 2223467789999999 9999999
Q ss_pred CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 81 GDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 81 ~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
.|++|.+||+.... .|.+++.+++
T Consensus 332 ~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 332 PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred CCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 99999999997543 4666666553
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.29 E-value=3.8e-11 Score=89.87 Aligned_cols=81 Identities=17% Similarity=0.352 Sum_probs=73.9
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
...+++++|++..++++++|+.+|+|.+..+.. ..+.+.++.++||||+ .|+++++..+.+-+
T Consensus 445 ~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-----------~yla~~Da~rkvv~ 513 (603)
T KOG0318|consen 445 ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-----------AYLAAGDASRKVVL 513 (603)
T ss_pred ccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-----------cEEEEeccCCcEEE
Confidence 678999999999999999999999999876553 4577888999999999 99999999999999
Q ss_pred EECCCCC-----------CCcEEEeCCCC
Q 036317 88 WSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 88 wd~~~~~-----------~v~~i~~sp~~ 105 (106)
||+++.+ .|.|++|+|+.
T Consensus 514 yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 514 YDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred EEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 9999987 89999999985
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=6.8e-11 Score=82.70 Aligned_cols=89 Identities=16% Similarity=0.253 Sum_probs=77.3
Q ss_pred eeecCCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317 5 IFSDGGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSW 75 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~ 75 (106)
...+.+|++++-.++|+|- |..+++++.|+.|++|+...+.- ..++..+.+++|+|.| ++
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-----------~~ 75 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-----------RY 75 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-----------cE
Confidence 4567888999999999999 99999999999999999874332 3466677889999999 99
Q ss_pred EEEecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317 76 VLEGSGDGSVYAWSARSGK------------EPPVIKWAPG 104 (106)
Q Consensus 76 i~t~s~d~~i~~wd~~~~~------------~v~~i~~sp~ 104 (106)
++++|-|.++.||.-.+++ .|.|++||++
T Consensus 76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s 116 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS 116 (312)
T ss_pred EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC
Confidence 9999999999999888765 8999999875
No 45
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.28 E-value=4.7e-11 Score=88.36 Aligned_cols=86 Identities=22% Similarity=0.335 Sum_probs=71.4
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----------------------------------------
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----------------------------------------- 46 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----------------------------------------- 46 (106)
+..|+++|.+++|+.+|.|+++++.|+++-+||..+|++
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P 351 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRP 351 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCc
Confidence 456788999999999999999999999999999977765
Q ss_pred ----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 47 ----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 47 ----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
.+|++.+..+.|.|.+ ..++++|+|++++||.+..+. .|-.++|+|.
T Consensus 352 ~~t~~GH~g~V~alk~n~tg-----------~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 352 VKTFIGHHGEVNALKWNPTG-----------SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT 412 (524)
T ss_pred ceeeecccCceEEEEECCCC-----------ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence 1345556666777777 999999999999999987655 6777888885
No 46
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=1.2e-11 Score=95.60 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=75.3
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
.||.+.|-++.||.++- |+++++|++++||++...+. ..|...++++.|.|-. ++|+++||-|+.|
T Consensus 366 ~GHt~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvD----------DryFiSGSLD~Kv 434 (712)
T KOG0283|consen 366 KGHTADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVD----------DRYFISGSLDGKV 434 (712)
T ss_pred hccchhheecccccCCe-eEeccccccEEeecCCCcceeeEEecCCeeEEEEecccC----------CCcEeecccccce
Confidence 58889999999999875 99999999999999987665 5577889999999865 4999999999999
Q ss_pred EEEECCCCC---------CCcEEEeCCC
Q 036317 86 YAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 86 ~~wd~~~~~---------~v~~i~~sp~ 104 (106)
+||++...+ -|..+.|.|+
T Consensus 435 RiWsI~d~~Vv~W~Dl~~lITAvcy~Pd 462 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLRDLITAVCYSPD 462 (712)
T ss_pred EEeecCcCeeEeehhhhhhheeEEeccC
Confidence 999999887 8899999986
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=2.6e-11 Score=83.71 Aligned_cols=86 Identities=20% Similarity=0.340 Sum_probs=74.8
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
....+.|+.+.|+-||+|.++++.|+++++||...|.+ .++-..+..++.+.|+ ..+++++.|..
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-----------skf~s~GgDk~ 82 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-----------SKFASCGGDKA 82 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-----------cccccCCCCce
Confidence 45567999999999999999999999999999999887 3344456788889999 99999999999
Q ss_pred EEEEECCCCC----------CCcEEEeCCCC
Q 036317 85 VYAWSARSGK----------EPPVIKWAPGS 105 (106)
Q Consensus 85 i~~wd~~~~~----------~v~~i~~sp~~ 105 (106)
|++||+.+|+ .|+.++|+..+
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees 113 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEES 113 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcc
Confidence 9999999998 78888887643
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=8.5e-11 Score=83.16 Aligned_cols=93 Identities=26% Similarity=0.356 Sum_probs=65.3
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCC-cEEEEEecCCccee---------------------
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNS-TLEASFSQHLSLVA--------------------- 66 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~-~~~~~fs~d~~~~~--------------------- 66 (106)
.++|++++|+++|+++++++.|..+.|||..+++. ...+.+ +-.+.|.+..+.++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 56999999999999999999999999999999876 111111 11233333322222
Q ss_pred ------------eeeeecccEEEEecCCCcEEEEECCCCC--------CCcEEEeCCC
Q 036317 67 ------------LSVLILRSWVLEGSGDGSVYAWSARSGK--------EPPVIKWAPG 104 (106)
Q Consensus 67 ------------~~~~~~~~~i~t~s~d~~i~~wd~~~~~--------~v~~i~~sp~ 104 (106)
+++.+-+..+++++.|++|++||++..+ .....+|+|.
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~ 151 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPE 151 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCC
Confidence 1222222778999999999999999765 5566677775
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=5.7e-11 Score=85.69 Aligned_cols=83 Identities=11% Similarity=0.159 Sum_probs=70.5
Q ss_pred CCCCeeEEEECCC---------------CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeee
Q 036317 11 DVSDANEVKLSND---------------GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLI 71 (106)
Q Consensus 11 ~~~~v~~v~~spd---------------g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~ 71 (106)
|..+|.+++|-|. |.++.+++.|++|++||+.++.. .++.+.+.+++|+|.|
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G--------- 346 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG--------- 346 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC---------
Confidence 3447777777653 35889999999999999999987 5677888999999999
Q ss_pred cccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 72 LRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 72 ~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+||+++.+|+++++||+++++ -+.+++|+-+
T Consensus 347 --kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 347 --KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT 387 (406)
T ss_pred --eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCC
Confidence 999999999999999999987 6777777654
No 50
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.26 E-value=4.4e-11 Score=87.38 Aligned_cols=81 Identities=28% Similarity=0.450 Sum_probs=70.5
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------ecc--CCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVS--HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~--~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
+.|+++..+++|..+++.+-|.++.++|..+.+. .+. ......+.|||++ .|+++||.||.
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~-----------~YvaAGS~dgs 410 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG-----------SYVAAGSADGS 410 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC-----------ceeeeccCCCc
Confidence 4899999999999999999999999999988776 111 1125679999999 99999999999
Q ss_pred EEEEECCCCC------------CCcEEEeCCC
Q 036317 85 VYAWSARSGK------------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~------------~v~~i~~sp~ 104 (106)
|+||++.+|+ .|.+++|+|.
T Consensus 411 v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 411 VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred EEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 9999999998 5899999984
No 51
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.25 E-value=3.4e-11 Score=87.27 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=70.4
Q ss_pred CCCCCCeeEEEECCCCCe-EEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 9 GGDVSDANEVKLSNDGRL-MLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
.+|...|..++|||..+- +++++-|+.|+|||++.+.. ..+.+.+.-++|+.+. .+|++|+.
T Consensus 254 ~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~-----------~lLasG~D 322 (440)
T KOG0302|consen 254 TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE-----------PLLASGGD 322 (440)
T ss_pred cccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc-----------ceeeecCC
Confidence 356779999999998554 56788999999999988743 3344556668999888 89999999
Q ss_pred CCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317 82 DGSVYAWSARSGK-------------EPPVIKWAPG 104 (106)
Q Consensus 82 d~~i~~wd~~~~~-------------~v~~i~~sp~ 104 (106)
||+++|||++.-+ +|.+|.|+|.
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 9999999999754 8999999985
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.25 E-value=1e-10 Score=84.38 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=76.6
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+..|+.+|.+++.+|+.+++++++.|..-+||+.-++.. .+|+.+++++.||.|| .+|+||+-+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-----------tlLATGdms 127 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-----------TLLATGDMS 127 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-----------eEEEecCCC
Confidence 3456788999999999999999999999999999999887 6788999999999999 999999999
Q ss_pred CcEEEEECCCCC----------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
|.|+||+..++. .+.=++|+|+
T Consensus 128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~ 159 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR 159 (399)
T ss_pred ccEEEEEcccCceEEEeecccCceEEEEeccc
Confidence 999999999987 3334567774
No 53
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=5.7e-11 Score=91.92 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=71.7
Q ss_pred CCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 13 SDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 13 ~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
..|++|+|+|. +.+++++..+|.+.+||+..-+. ..|.+++..+.|+|++ .+||||+.|++|+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-----------~~lATGGRDK~vk 245 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-----------EWLATGGRDKMVK 245 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-----------ceeeecCCCccEE
Confidence 47999999985 77788888999999999986554 4477888899999999 9999999999999
Q ss_pred EEECCCCC-----------CCcEEEeCCCC
Q 036317 87 AWSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 87 ~wd~~~~~-----------~v~~i~~sp~~ 105 (106)
|||+.+++ ++.+++|-|.+
T Consensus 246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~ 275 (839)
T KOG0269|consen 246 IWDMTDSRAKPKHTINTIAPVGRVKWRPAR 275 (839)
T ss_pred EEeccCCCccceeEEeecceeeeeeeccCc
Confidence 99999776 88999998865
No 54
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.23 E-value=1.1e-10 Score=81.67 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=78.3
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
+.||.-+++.++++.+|..|.+++.|....+|-..+|+. .+|.+.+.++..+.+. +.++||+.|.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-----------~~liTGSAD~ 74 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-----------KHLITGSADQ 74 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-----------ceeeeccccc
Confidence 456777999999999999999999999999999988877 6788999999999999 9999999999
Q ss_pred cEEEEECCCCC---------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
++++||.++|+ +|+.+.|++.
T Consensus 75 t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~ 104 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTNSPVKRVDFSFG 104 (327)
T ss_pred eeEEEEcCCCcEEEEeecCCeeEEEeeccC
Confidence 99999999999 7888888764
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.7e-11 Score=93.88 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=78.1
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
+...|.++|+.+.|+|++-.+++++.|-.|++|+..+.+. .+|-.++..+.|++.. -+|+++|+|
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-----------PWIlSASDD 114 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-----------PWILSASDD 114 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCC-----------ceEEEccCC
Confidence 3456788999999999999999999999999999998887 5677888889999999 999999999
Q ss_pred CcEEEEECCCCC----------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
.+|+||+.++++ -|-|.+|+|.
T Consensus 115 QTIrIWNwqsr~~iavltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 115 QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT 146 (1202)
T ss_pred CeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence 999999999988 5667788884
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.22 E-value=4.3e-10 Score=75.36 Aligned_cols=84 Identities=23% Similarity=0.376 Sum_probs=70.7
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
.+...+.+++|+|+++++++++.++.+++||..+++. ..+...+..+.|+|++ +.+++++.|+.+
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~l~~~~~~~~i 201 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-----------EKLLSSSSDGTI 201 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc-----------CEEEEecCCCcE
Confidence 4556899999999999888888899999999987765 3344467789999999 999999999999
Q ss_pred EEEECCCCC----------CCcEEEeCCC
Q 036317 86 YAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 86 ~~wd~~~~~----------~v~~i~~sp~ 104 (106)
++||+++++ .+.++.|+|+
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 230 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPD 230 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCC
Confidence 999998765 6778888874
No 57
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.21 E-value=6.8e-11 Score=90.70 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=64.8
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
.+.+|.-.|+.++|||||++|++++.|.++.+|..+.... ..|...+.+|+|+||+ ++++|
T Consensus 567 ~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde-----------~~FaT 635 (764)
T KOG1063|consen 567 ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE-----------KYFAT 635 (764)
T ss_pred eecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc-----------ceeEE
Confidence 4566666899999999999999999999999999765443 2244445689999999 99999
Q ss_pred ecCCCcEEEEECCCC
Q 036317 79 GSGDGSVYAWSARSG 93 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~ 93 (106)
+|.|.+|++|....+
T Consensus 636 aSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 636 ASRDKKVKVWEEPDL 650 (764)
T ss_pred ecCCceEEEEeccCc
Confidence 999999999999887
No 58
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=1.6e-10 Score=83.36 Aligned_cols=103 Identities=14% Similarity=0.163 Sum_probs=83.2
Q ss_pred CceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeec----c
Q 036317 2 PFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLIL----R 73 (106)
Q Consensus 2 ~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~----~ 73 (106)
.|+.+++.++...|.-++.+.||..+++++.|.++++|-..+++. ..+..++..++|-|...|-.+...-- .
T Consensus 225 g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 225 GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCc
Confidence 367788888888999999999999999999999999999988844 44555666788888764333322111 1
Q ss_pred cEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+++.++|.|++|++||+.+|+ +|+.++|+|.
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC
Confidence 689999999999999999998 9999999974
No 59
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.20 E-value=4.9e-11 Score=91.85 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=70.0
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
....|..+|++|+.+|+.+.++++++|++.+||++++.++ .+|...+.++.|+|.. +.++|+|.|
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d-----------q~laT~SgD 526 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND-----------QLLATCSGD 526 (775)
T ss_pred HHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecccc-----------ceeEeccCC
Confidence 4456777999999999999999999999999999997776 6788788899999999 999999999
Q ss_pred CcEEEEECCCCC
Q 036317 83 GSVYAWSARSGK 94 (106)
Q Consensus 83 ~~i~~wd~~~~~ 94 (106)
++|+||.+++..
T Consensus 527 ~TvKIW~is~fS 538 (775)
T KOG0319|consen 527 KTVKIWSISTFS 538 (775)
T ss_pred ceEEEEEeccce
Confidence 999999999876
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.20 E-value=2.7e-10 Score=90.06 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=66.9
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecC-CcceeeeeeecccEEE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQH-LSLVALSVLILRSWVL 77 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d-~~~~~~~~~~~~~~i~ 77 (106)
.+.+.|.+++|+|+|+++++++.|+.|+|||..+... ...+..+..++|++. + .+|+
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----------~~la 549 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK-----------SQVA 549 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCC-----------CEEE
Confidence 3566899999999999999999999999999753211 112334556788764 6 8899
Q ss_pred EecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317 78 EGSGDGSVYAWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 78 t~s~d~~i~~wd~~~~~----------~v~~i~~sp 103 (106)
+++.|++|++||+++++ .|.+++|+|
T Consensus 550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p 585 (793)
T PLN00181 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS 585 (793)
T ss_pred EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC
Confidence 99999999999999876 788999987
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.19 E-value=1e-10 Score=83.47 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=74.3
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
|++..+..+|.++.|+|.|+++++++....+++||+.+.+. .++.+.++.+.+++.+ +.-+|
T Consensus 210 ~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-----------~lYvT 278 (430)
T KOG0640|consen 210 FKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-----------SLYVT 278 (430)
T ss_pred HHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-----------cEEEE
Confidence 34445567999999999999999999999999999998876 3467788899999999 99999
Q ss_pred ecCCCcEEEEECCCCC------------CCcEEEeCC
Q 036317 79 GSGDGSVYAWSARSGK------------EPPVIKWAP 103 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~~------------~v~~i~~sp 103 (106)
+|.||.|++||=-+++ .|.+..|..
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence 9999999999987766 666666653
No 62
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.19 E-value=1.6e-10 Score=83.63 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=76.4
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
||-+.|.+++..|.-+.+++++.|.++++||..+... .+|.+.+..+.+-|.. -.|+|||-|++|
T Consensus 233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d-----------pqvit~S~D~tv 301 (460)
T KOG0285|consen 233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD-----------PQVITGSHDSTV 301 (460)
T ss_pred cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC-----------CceEEecCCceE
Confidence 5567899999999999999999999999999988654 6788889999999988 899999999999
Q ss_pred EEEECCCCC----------CCcEEEeCCCC
Q 036317 86 YAWSARSGK----------EPPVIKWAPGS 105 (106)
Q Consensus 86 ~~wd~~~~~----------~v~~i~~sp~~ 105 (106)
++||+..|+ .++++..+|+-
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e 331 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKE 331 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCch
Confidence 999999998 88888888863
No 63
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.19 E-value=9.8e-11 Score=91.24 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=65.1
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC-C
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD-G 83 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d-~ 83 (106)
+.||.++|+++.|||||+++++++.|++|++||+.++.+ ..-..+++.++|||+| .++||.+.| .
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPng-----------D~LAT~Hvd~~ 640 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNG-----------DFLATVHVDQN 640 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCC-----------CEEEEEEecCc
Confidence 357788999999999999999999999999999999988 2234567789999999 999999998 5
Q ss_pred cEEEEECCCC
Q 036317 84 SVYAWSARSG 93 (106)
Q Consensus 84 ~i~~wd~~~~ 93 (106)
-|++|--++.
T Consensus 641 gIylWsNksl 650 (910)
T KOG1539|consen 641 GIYLWSNKSL 650 (910)
T ss_pred eEEEEEchhH
Confidence 7999966543
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.18 E-value=1e-10 Score=92.60 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=76.8
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
..+.+|.+.|.++.|+||+.++++++.|+.|.+||..+.+. ..|.+.+..++|.|-| +|+++=+.
T Consensus 123 ~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-----------ky~ASqsd 191 (942)
T KOG0973|consen 123 SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-----------KYFASQSD 191 (942)
T ss_pred EEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc-----------CeeeeecC
Confidence 34578889999999999999999999999999999999865 5677788899999999 99999999
Q ss_pred CCcEEEEECCCCC----------------CCcEEEeCCC
Q 036317 82 DGSVYAWSARSGK----------------EPPVIKWAPG 104 (106)
Q Consensus 82 d~~i~~wd~~~~~----------------~v~~i~~sp~ 104 (106)
|+++++|++.+=. -...++|||+
T Consensus 192 Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 192 DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 9999999965511 5677888886
No 65
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.18 E-value=1.7e-10 Score=91.40 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=75.7
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC----------Cce------------eccCCCcEEEEEecCCc
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ----------GTL------------PVSHNSTLEASFSQHLS 63 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~----------~~~------------~~~~~~~~~~~fs~d~~ 63 (106)
.++..|.+.|+++.|||||+++|+|+.|+.+.+|+-.. |.. .+|.+.+..+.|+|++
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~- 141 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD- 141 (942)
T ss_pred eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-
Confidence 45667788999999999999999999999999998652 111 3567778899999999
Q ss_pred ceeeeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 64 LVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 64 ~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
.++++++.|++|.+|+.++.+ .|..+.|.|-
T Consensus 142 ----------~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~ 182 (942)
T KOG0973|consen 142 ----------SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI 182 (942)
T ss_pred ----------cEEEEecccceEEEEccccceeeeeeecccccccceEECCc
Confidence 999999999999999999877 7888888884
No 66
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.18 E-value=4.4e-10 Score=78.29 Aligned_cols=98 Identities=13% Similarity=0.234 Sum_probs=75.3
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeee--------------
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSV-------------- 69 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~-------------- 69 (106)
++.++.+.|+.+.|-...+.+++++.|++|++||.++++. ..-..++.++..++||.+|-++-
T Consensus 138 E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 138 EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL 217 (334)
T ss_pred hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccc
Confidence 3456778899999988778888889999999999999876 22333455666677776655311
Q ss_pred ---------------eecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317 70 ---------------LILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 70 ---------------~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
-+...++++|++|..++.+|..+|+ +|.|++|+|+
T Consensus 218 lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 218 LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred eeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence 1222678999999999999999987 8999999996
No 67
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.17 E-value=7.8e-10 Score=74.55 Aligned_cols=82 Identities=13% Similarity=0.304 Sum_probs=63.4
Q ss_pred CCeeEEEECCCCCeEEEEe--CCCeEEEEEcCCCce-eccCCCcEEEEEecCCcceeeeeeecccEEEEecC---CCcEE
Q 036317 13 SDANEVKLSNDGRLMLLTT--LEGHIHVLHSFQGTL-PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG---DGSVY 86 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~--~~~~i~l~d~~~~~~-~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~---d~~i~ 86 (106)
++|.+++|+|+|+.+++.. ....+.+||...... .........+.|+|+| ++|+.++. .|.+.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G-----------~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDG-----------RFLVLAGFGNLNGDLE 128 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCC-----------CEEEEEEccCCCcEEE
Confidence 4699999999999876553 567899999963333 3234455679999999 99888754 46799
Q ss_pred EEECCCCC--------CCcEEEeCCCC
Q 036317 87 AWSARSGK--------EPPVIKWAPGS 105 (106)
Q Consensus 87 ~wd~~~~~--------~v~~i~~sp~~ 105 (106)
+||+++.+ .+..++|+|+-
T Consensus 129 ~wd~~~~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 129 FWDVRKKKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred EEECCCCEEeeccccCcEEEEEEcCCC
Confidence 99999776 67888999973
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.17 E-value=8.6e-11 Score=88.01 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=66.3
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCC--CcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHN--STLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~--~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
.+..++|+|||+.+|+++.||.|.+|+.....+ ..|.. .+.+++||+|| ++|++=+.|++
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-----------~~LlSRg~D~t 387 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-----------NYLLSRGFDDT 387 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-----------chhhhccCCCc
Confidence 788999999999999999999999999744333 22333 57789999999 99999999999
Q ss_pred EEEEECCCCC-------------CCcEEEeCCC
Q 036317 85 VYAWSARSGK-------------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~-------------~v~~i~~sp~ 104 (106)
+++||++.-+ +-....|||+
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCC
Confidence 9999999766 4556677775
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.16 E-value=7.1e-10 Score=87.72 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=68.8
Q ss_pred cCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEe-cCCcceeeeeeecccEEEEecCC
Q 036317 8 DGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFS-QHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 8 ~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs-~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
+.+|.+.|.+++|+| ++.++++++.|+++++||..+++. ...+..+..+.|+ +++ .++++|+.|
T Consensus 571 ~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g-----------~~latgs~d 639 (793)
T PLN00181 571 MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESG-----------RSLAFGSAD 639 (793)
T ss_pred ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCC-----------CEEEEEeCC
Confidence 346677999999997 789999999999999999988766 2233456778885 678 999999999
Q ss_pred CcEEEEECCCCC-----------CCcEEEeCC
Q 036317 83 GSVYAWSARSGK-----------EPPVIKWAP 103 (106)
Q Consensus 83 ~~i~~wd~~~~~-----------~v~~i~~sp 103 (106)
+.|++||+++++ .|.+++|.+
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~ 671 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD 671 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEeC
Confidence 999999998754 566777753
No 70
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.14 E-value=4.3e-10 Score=82.49 Aligned_cols=75 Identities=8% Similarity=0.117 Sum_probs=61.6
Q ss_pred cCCCCCCeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 8 DGGDVSDANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
+.+|.++|++++|+|-+.++ |+++.|+++.|||.++.+. ..+...+..+.|||.. +..+++++.
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~----------etvLASSg~ 337 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN----------ETVLASSGT 337 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC----------CceeEeccc
Confidence 34667799999999976655 5667899999999987665 4566778899999997 467788889
Q ss_pred CCcEEEEECCC
Q 036317 82 DGSVYAWSARS 92 (106)
Q Consensus 82 d~~i~~wd~~~ 92 (106)
|+.+.+||+..
T Consensus 338 D~rl~vWDls~ 348 (422)
T KOG0264|consen 338 DRRLNVWDLSR 348 (422)
T ss_pred CCcEEEEeccc
Confidence 99999999974
No 71
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.14 E-value=5.6e-10 Score=86.58 Aligned_cols=91 Identities=22% Similarity=0.334 Sum_probs=70.5
Q ss_pred ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC---------------------------------------
Q 036317 3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ--------------------------------------- 43 (106)
Q Consensus 3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~--------------------------------------- 43 (106)
|+.-+...|.+.|+.+.|+..|+.+++++.||+++.||...
T Consensus 383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 55556666677788888888888777777787777777543
Q ss_pred -----Cce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 44 -----GTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 44 -----~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
|++ .+|.+++.+++|+|++ ..++++|-|.+|++||+-+.. .+..++|.|+
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~~~-----------~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSPDG-----------SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEcccc-----------CeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence 332 3567777788999999 999999999999999998763 7788888885
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.13 E-value=3.1e-10 Score=82.28 Aligned_cols=86 Identities=22% Similarity=0.345 Sum_probs=75.0
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
.+.||..+|.+|.|++ ...+.+++.|++|+.||+.++.. ..-..+..++..+|.. +.|++|+.|.
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~-----------~Ll~~gssdr 322 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS-----------KLLASGSSDR 322 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc-----------ceeeecCCCC
Confidence 4678999999999999 55589999999999999999887 2234466789999999 9999999999
Q ss_pred cEEEEECCCCC-------------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK-------------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~-------------~v~~i~~sp~ 104 (106)
.+++||-+++. +|..++|+|.
T Consensus 323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred ceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence 99999999876 8889999985
No 73
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.13 E-value=6.4e-10 Score=86.82 Aligned_cols=84 Identities=15% Similarity=0.332 Sum_probs=73.9
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------------------------------------------
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------------------------------------------- 46 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------------------------------------------- 46 (106)
.|+++|+.++.+.-++.+++++.+|.+.+||.....+
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR 570 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence 5567999999999999999999999999999765542
Q ss_pred --eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317 47 --PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 47 --~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
.++.+.+++.+||||| ++|++++-|++|++||+-++. ++..++|||+
T Consensus 571 ~f~gh~nritd~~FS~Dg-----------rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDG-----------RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN 628 (910)
T ss_pred HhhccccceeeeEeCCCC-----------cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence 1356778889999999 999999999999999999998 8889999996
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.13 E-value=5.4e-10 Score=80.68 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=66.3
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------------------------------------
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------------------------------------- 46 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------------------------------------- 46 (106)
.+++.+|+..|.++.||-||.+++++..+|.+.||...++..
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence 467788899999999999999999999999999999877654
Q ss_pred --------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCcEE
Q 036317 47 --------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99 (106)
Q Consensus 47 --------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~i 99 (106)
.++..++..=.|.||| +.++++..||+|++|+.++|++...+
T Consensus 179 ~~~~~kv~~Gh~~~ct~G~f~pdG-----------Kr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 179 SQALCKVMSGHNSPCTCGEFIPDG-----------KRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred CcceeeEecCCCCCcccccccCCC-----------ceEEEEecCceEEEEecCCCceeEEe
Confidence 0111222233577777 99999999999999999999944444
No 75
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.13 E-value=2.5e-10 Score=80.79 Aligned_cols=89 Identities=19% Similarity=0.330 Sum_probs=74.8
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------ec----cCCCcEEEEEecCCcceeeeeeec
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PV----SHNSTLEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~----~~~~~~~~~fs~d~~~~~~~~~~~ 72 (106)
.|.+.||...|+.+..+|+|.++++.++|.++++||...... .+ ...-...|+|||++
T Consensus 209 ~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~---------- 278 (338)
T KOG0265|consen 209 LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG---------- 278 (338)
T ss_pred eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC----------
Confidence 466788889999999999999999999999999999764332 11 12234579999999
Q ss_pred ccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 73 RSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 73 ~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+++-+|+.|+.+++||..+-. .|++++|+|.
T Consensus 279 -~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 279 -TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPT 319 (338)
T ss_pred -CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCC
Confidence 999999999999999998754 8999999996
No 76
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=9.7e-11 Score=90.27 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=75.5
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
+...+|...|+.++|+|||++++.++.|.+++|||...|++ ..+.+.+..+.|+|.. -.+++|+.
T Consensus 148 ~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e-----------~Lla~Gs~ 216 (825)
T KOG0267|consen 148 HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE-----------VLLAPGSS 216 (825)
T ss_pred eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchh-----------hhhccCCC
Confidence 44445666799999999999999999999999999999988 3355677778899998 88899999
Q ss_pred CCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 82 DGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 82 d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
|+++++||+++-+ .|++.+|+|.
T Consensus 217 d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred CceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence 9999999999543 8999999986
No 77
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.12 E-value=1.8e-10 Score=85.37 Aligned_cols=84 Identities=18% Similarity=0.314 Sum_probs=70.3
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCC-CcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHN-STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
+|..+|.++.|+++|..+++++.|+.+++||.++|++ ..+.+ .+..+.|.||+ .+.+++|..|+.|+
T Consensus 256 gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~----------~n~fl~G~sd~ki~ 325 (503)
T KOG0282|consen 256 GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN----------QNIFLVGGSDKKIR 325 (503)
T ss_pred cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCC----------CcEEEEecCCCcEE
Confidence 5566999999999999999999999999999999998 33333 44678999998 45788899999999
Q ss_pred EEECCCCC----------CCcEEEeCC
Q 036317 87 AWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 87 ~wd~~~~~----------~v~~i~~sp 103 (106)
.||+++++ .|..|.|=|
T Consensus 326 ~wDiRs~kvvqeYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 326 QWDIRSGKVVQEYDRHLGAILDITFVD 352 (503)
T ss_pred EEeccchHHHHHHHhhhhheeeeEEcc
Confidence 99999998 566666643
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.12 E-value=8e-10 Score=81.41 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=72.0
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--e-ccC---CCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--P-VSH---NSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~-~~~---~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
-|..+|+.+..+|.|+|++++++|+...+.|..+|.. . .+. -...+..|+||| ..+.+|..|+
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-----------Lifgtgt~d~ 369 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-----------LIFGTGTPDG 369 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-----------eEEeccCCCc
Confidence 3456899999999999999999999999999999987 1 121 235679999999 9999999999
Q ss_pred cEEEEECCCCC----------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
.+++||++++. +|..|+|+-+
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsEN 400 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSEN 400 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccC
Confidence 99999999876 8999999754
No 79
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.12 E-value=6.2e-10 Score=85.90 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=70.7
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+.||+-.|.+|+|+|..+.+++++.|.+++||.+.++.. .+|...+..+.|-.+| +++++++.|
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~-----------~qliS~~ad 568 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG-----------KQLISAGAD 568 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC-----------cEEEeccCC
Confidence 3468888999999999999999999999999999998876 5677788899999999 999999999
Q ss_pred CcEEEEECCCCC
Q 036317 83 GSVYAWSARSGK 94 (106)
Q Consensus 83 ~~i~~wd~~~~~ 94 (106)
|-+++|++++++
T Consensus 569 GliKlWnikt~e 580 (775)
T KOG0319|consen 569 GLIKLWNIKTNE 580 (775)
T ss_pred CcEEEEeccchh
Confidence 999999999987
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.12 E-value=2e-10 Score=86.04 Aligned_cols=89 Identities=12% Similarity=0.219 Sum_probs=70.7
Q ss_pred eecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce----------eccCCCcEEEEEecCCcceeeeeeeccc
Q 036317 6 FSDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL----------PVSHNSTLEASFSQHLSLVALSVLILRS 74 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~ 74 (106)
++..||...+++.+|+|+. +.+++++.|+++++||+..-+. ....-.++.|.|++|| +
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-----------~ 330 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-----------K 330 (641)
T ss_pred hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc-----------c
Confidence 4556777799999999985 4567889999999999876543 1123356789999999 9
Q ss_pred EEEEecCCCcEEEEECCCCC---------------CCcEEEeCCCC
Q 036317 75 WVLEGSGDGSVYAWSARSGK---------------EPPVIKWAPGS 105 (106)
Q Consensus 75 ~i~t~s~d~~i~~wd~~~~~---------------~v~~i~~sp~~ 105 (106)
.|++|..||+|++|+..... .|.||+||++-
T Consensus 331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 99999999999999974322 89999999863
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.12 E-value=4.1e-10 Score=78.43 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
..|.+..++|+...+++++.|..++-||..+|+. .++++++-++.|+||| ...++||+||+|++
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-----------E~yAsGSEDGTirl 293 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-----------ELYASGSEDGTIRL 293 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC-----------ceeeccCCCceEEE
Confidence 4788999999999999999999999999999876 5677888899999999 99999999999999
Q ss_pred EECCCCC
Q 036317 88 WSARSGK 94 (106)
Q Consensus 88 wd~~~~~ 94 (106)
|++..++
T Consensus 294 WQt~~~~ 300 (334)
T KOG0278|consen 294 WQTTPGK 300 (334)
T ss_pred EEecCCC
Confidence 9998776
No 82
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.12 E-value=3.4e-10 Score=80.83 Aligned_cols=75 Identities=17% Similarity=0.368 Sum_probs=66.1
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccC-CCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSH-NSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+|.+.|+.|.+|+.|+..++++.||.|+|||..+++. ..|. ..++++.|+.++ +||++.+.|
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~-----------kyiLsSG~D 326 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG-----------KYILSSGKD 326 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC-----------eEEeecCCc
Confidence 35567999999999999999999999999999998887 2232 356789999999 999999999
Q ss_pred CcEEEEECCCCC
Q 036317 83 GSVYAWSARSGK 94 (106)
Q Consensus 83 ~~i~~wd~~~~~ 94 (106)
..+++|++.+|+
T Consensus 327 S~vkLWEi~t~R 338 (430)
T KOG0640|consen 327 STVKLWEISTGR 338 (430)
T ss_pred ceeeeeeecCCc
Confidence 999999999987
No 83
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4.4e-10 Score=85.86 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=76.2
Q ss_pred CceeeecCCCCCCeeEEEECCCC--CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317 2 PFDIFSDGGDVSDANEVKLSNDG--RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSW 75 (106)
Q Consensus 2 ~~~~~~~~~~~~~v~~v~~spdg--~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~ 75 (106)
|...|++.+|...|+++.+=+.| -|+++++.|.++++||.++... .+|..-+..+.|+|.- ..
T Consensus 173 ~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l-----------pi 241 (794)
T KOG0276|consen 173 PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL-----------PI 241 (794)
T ss_pred CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC-----------cE
Confidence 55678888999999999997654 5899999999999999998876 5566677789999999 99
Q ss_pred EEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317 76 VLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 76 i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp 103 (106)
|+|||+||+++||+..+=+ .+.||+-.+
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k 279 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK 279 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence 9999999999999987744 666666544
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=3.4e-10 Score=81.36 Aligned_cols=74 Identities=16% Similarity=0.305 Sum_probs=68.2
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
.|...|.++.||.|+..+++++.|.++++--..+|+. .+|...+..+.|++|| ..|+++|.||+|
T Consensus 304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG-----------~~iisaSsDgtv 372 (508)
T KOG0275|consen 304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG-----------HHIISASSDGTV 372 (508)
T ss_pred hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC-----------CeEEEecCCccE
Confidence 4456899999999999999999999999999999987 6677788899999999 999999999999
Q ss_pred EEEECCCCC
Q 036317 86 YAWSARSGK 94 (106)
Q Consensus 86 ~~wd~~~~~ 94 (106)
++|+.++++
T Consensus 373 kvW~~Ktte 381 (508)
T KOG0275|consen 373 KVWHGKTTE 381 (508)
T ss_pred EEecCcchh
Confidence 999999987
No 85
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.10 E-value=3.2e-10 Score=81.14 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=68.3
Q ss_pred ecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 7 SDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
.+.+|.+.|+.+.+.|+. +++++++.|..+++||++++.. .+|...+.++.|+++| .+|++
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-----------d~i~S 198 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-----------DRIAS 198 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-----------Ceeec
Confidence 345777899999999985 7889999999999999999876 5677889999999999 99999
Q ss_pred ecCCCcEEEEECCCCC
Q 036317 79 GSGDGSVYAWSARSGK 94 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~~ 94 (106)
++-|.++++|++...+
T Consensus 199 cGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNVKE 214 (385)
T ss_pred cCCcceEEEEecChhH
Confidence 9999999999998654
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.4e-10 Score=83.29 Aligned_cols=88 Identities=13% Similarity=0.217 Sum_probs=74.2
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEe--cC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG--SG 81 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~--s~ 81 (106)
+.+|..+|..++|++|++++++++.|+.+.|||..+-+. ..|.+.+.+++|+|-. +..||+| +.
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q----------~~lLAsGGGs~ 366 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ----------SGLLATGGGSA 366 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc----------cCceEEcCCCc
Confidence 456788999999999999999999999999999954443 5577888899999875 2456665 56
Q ss_pred CCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317 82 DGSVYAWSARSGK---------EPPVIKWAPGS 105 (106)
Q Consensus 82 d~~i~~wd~~~~~---------~v~~i~~sp~~ 105 (106)
|+.|++||..+|+ .|.+|.|+|.+
T Consensus 367 D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 367 DRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKY 399 (484)
T ss_pred ccEEEEEEcCCCcEecccccCCceeeEEEcCCC
Confidence 9999999999988 89999999976
No 87
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.07 E-value=6.7e-10 Score=81.05 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=70.7
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcC--------C-----Cce-------eccCCCcEEEEEecCCcceee
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSF--------Q-----GTL-------PVSHNSTLEASFSQHLSLVAL 67 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~--------~-----~~~-------~~~~~~~~~~~fs~d~~~~~~ 67 (106)
+..|+..|+.+.|+|+|+.+++++.++++.+|-.. + .+. ..+...+..++|+||+
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~----- 135 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS----- 135 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-----
Confidence 34566799999999999999999999999999754 2 100 2344567789999999
Q ss_pred eeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317 68 SVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 68 ~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp 103 (106)
.++++++-|.++++||+..|+ -++.++|.|
T Consensus 136 ------~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 136 ------NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP 175 (434)
T ss_pred ------ceeeeeeccceEEEEEeccceeEeeccccccccceeecch
Confidence 999999999999999999998 677778776
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=2.5e-09 Score=75.82 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=76.1
Q ss_pred ceeeecCCC-CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 3 FDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 3 ~~~~~~~~~-~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
...++++.. ...|++|.|+|.+..|++++.|+++++||.....+ -.+.++++.|+|.++ ..+++
T Consensus 3 ~~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~------------~~~~~ 70 (323)
T KOG1036|consen 3 PNEFELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE------------STIVT 70 (323)
T ss_pred ccccccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC------------ceEEE
Confidence 456777665 45899999999999999999999999999877655 346678889999975 67899
Q ss_pred ecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317 79 GSGDGSVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
|+-||.|+++|+.+++ .++||.++|.
T Consensus 71 G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~ 105 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYE 105 (323)
T ss_pred eccCceEEEEEecCCcceeeccCCCceEEEEeecc
Confidence 9999999999999987 8899988753
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.04 E-value=1.4e-09 Score=79.93 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=70.6
Q ss_pred CCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCC--ce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 9 GGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQG--TL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 9 ~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~--~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
.+|...|+.++|+|. ...+++++.|+.+.|||.+++ +. ..+.+.+.++.|.|-+ ...|||||.
T Consensus 224 ~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~----------~~ilAT~S~ 293 (422)
T KOG0264|consen 224 SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN----------EFILATGSA 293 (422)
T ss_pred ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC----------CceEEeccC
Confidence 456678999999986 455578889999999999964 22 3456677889999877 256789999
Q ss_pred CCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317 82 DGSVYAWSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 82 d~~i~~wd~~~~~-----------~v~~i~~sp~~ 105 (106)
|++|++||++..+ .|.++.|||..
T Consensus 294 D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 294 DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 9999999999866 89999999975
No 90
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.04 E-value=5.8e-10 Score=80.69 Aligned_cols=74 Identities=20% Similarity=0.393 Sum_probs=63.0
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
+|.+.|.+|+|||.|+-+++++.|++|+|+.+..+.- ......+.++.||.|. +||++||.|+.
T Consensus 270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds-----------kyi~SGSdd~n 338 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS-----------KYIISGSDDGN 338 (433)
T ss_pred ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc-----------cEEEecCCCcc
Confidence 4566899999999999999999999999999987765 2223356789999999 99999999999
Q ss_pred EEEEECCCCC
Q 036317 85 VYAWSARSGK 94 (106)
Q Consensus 85 i~~wd~~~~~ 94 (106)
|++|...-.+
T Consensus 339 vRlWka~Ase 348 (433)
T KOG0268|consen 339 VRLWKAKASE 348 (433)
T ss_pred eeeeecchhh
Confidence 9999876443
No 91
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.7e-09 Score=74.35 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=71.7
Q ss_pred ecCCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCC-Cce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 7 SDGGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQ-GTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~-~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
+..+|.+-|...+|||. ++.+++++.|+++++||+.. |+. +.+...+..|.|+.-. +..++||+-
T Consensus 142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~----------~~vl~Tg~v 211 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN----------HNVLATGGV 211 (311)
T ss_pred eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC----------CcEEEecCC
Confidence 34567778999999995 78889999999999999764 443 3455567789999665 378899999
Q ss_pred CCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317 82 DGSVYAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 82 d~~i~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
|+.|++||++.-+ .|+.++|||-
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph 245 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH 245 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcc
Confidence 9999999999766 8899999984
No 92
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=9.1e-10 Score=86.83 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=72.4
Q ss_pred eeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 4 DIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 4 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
+.|++.||-.-|+.+.|++.--++++++.|.+|+|||.++++. .+|..+++++.|+|.. ..|+++
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-----------DlIVSa 153 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-----------DLIVSA 153 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-----------ceEEEe
Confidence 5688889889999999999999999999999999999999987 6788889999999999 999999
Q ss_pred cCCCcEEEEECCC
Q 036317 80 SGDGSVYAWSARS 92 (106)
Q Consensus 80 s~d~~i~~wd~~~ 92 (106)
|-|.+|++||+.-
T Consensus 154 SLDQTVRVWDisG 166 (1202)
T KOG0292|consen 154 SLDQTVRVWDISG 166 (1202)
T ss_pred cccceEEEEeecc
Confidence 9999999999864
No 93
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.02 E-value=2.8e-09 Score=82.74 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=74.5
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
..|-++++||||++++++--|.++++|-+.+-++ -+|.-++.++.+|||+ +.|+|||.|.+|++|
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-----------klivTgSADKnVKiW 577 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-----------KLIVTGSADKNVKIW 577 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc-----------CeEEeccCCCceEEe
Confidence 4789999999999999999999999999888877 5677788999999999 999999999999999
Q ss_pred ECCCCC----------CCcEEEeCCCC
Q 036317 89 SARSGK----------EPPVIKWAPGS 105 (106)
Q Consensus 89 d~~~~~----------~v~~i~~sp~~ 105 (106)
=++-|. .|-++.|-|+.
T Consensus 578 GLdFGDCHKS~fAHdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 578 GLDFGDCHKSFFAHDDSVMSVQFLPKT 604 (888)
T ss_pred ccccchhhhhhhcccCceeEEEEcccc
Confidence 998776 78899998864
No 94
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.02 E-value=3.9e-09 Score=71.15 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=57.5
Q ss_pred CCCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-----
Q 036317 12 VSDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG----- 81 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~----- 81 (106)
...++.+.|||+|+++++++.+ |.+.+||..+.+. ...+.....+.||||| ++++++..
T Consensus 100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdG-----------r~~~ta~t~~r~~ 168 (194)
T PF08662_consen 100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDG-----------RYLATATTSPRLR 168 (194)
T ss_pred CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCC-----------CEEEEEEecccee
Confidence 3578899999999999998744 6799999997776 3344456789999999 77777643
Q ss_pred -CCcEEEEECCCCCCCc
Q 036317 82 -DGSVYAWSARSGKEPP 97 (106)
Q Consensus 82 -d~~i~~wd~~~~~~v~ 97 (106)
|..++||+.. |+.+.
T Consensus 169 ~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 169 VDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred ccccEEEEEec-CeEeE
Confidence 6789999985 65333
No 95
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.01 E-value=8.8e-10 Score=79.76 Aligned_cols=81 Identities=16% Similarity=0.258 Sum_probs=64.3
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
.||...|+.++|+. +|+++++.|.++++|+..+++. .+|+..+ ++.--.+ ++|++||.|.+
T Consensus 317 vGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGI--AClQYr~-----------rlvVSGSSDnt 381 (499)
T KOG0281|consen 317 VGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI--ACLQYRD-----------RLVVSGSSDNT 381 (499)
T ss_pred hhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccc--eehhccC-----------eEEEecCCCce
Confidence 46677899998875 4999999999999999999987 2233233 2233467 89999999999
Q ss_pred EEEEECCCCC----------CCcEEEeCCC
Q 036317 85 VYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
|++||++.|+ -|+|++|+.+
T Consensus 382 IRlwdi~~G~cLRvLeGHEeLvRciRFd~k 411 (499)
T KOG0281|consen 382 IRLWDIECGACLRVLEGHEELVRCIRFDNK 411 (499)
T ss_pred EEEEeccccHHHHHHhchHHhhhheeecCc
Confidence 9999999997 7888888764
No 96
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=3.3e-09 Score=83.49 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=73.8
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
+++.++|+-+|+++++++.|-.|++.+..+... .++.+++..+.|+|.+ .++|+.+.||.|++||
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~-----------~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG-----------NFLAVSSCDGKVQIWD 166 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC-----------CEEEEEecCceEEEEE
Confidence 789999999999999999999999999987654 6788899999999999 9999999999999999
Q ss_pred CCCCC------------------CCcEEEeCCCC
Q 036317 90 ARSGK------------------EPPVIKWAPGS 105 (106)
Q Consensus 90 ~~~~~------------------~v~~i~~sp~~ 105 (106)
++++. .+..++|+|+.
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~ 200 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG 200 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCC
Confidence 99987 56778999984
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.00 E-value=4.4e-09 Score=74.64 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
+.++|-++.|+.||.++++++-|+++++||+.+++. -.|.+++..+.|-+... + ..|+|||=|.+++.
T Consensus 71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~--------~-~cl~TGSWDKTlKf 141 (347)
T KOG0647|consen 71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMN--------Y-QCLVTGSWDKTLKF 141 (347)
T ss_pred cCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCC--------c-ceeEecccccceee
Confidence 356999999999999999999999999999999987 33666777788876650 0 48999999999999
Q ss_pred EECCCCCCCcEE
Q 036317 88 WSARSGKEPPVI 99 (106)
Q Consensus 88 wd~~~~~~v~~i 99 (106)
||++..+++..+
T Consensus 142 WD~R~~~pv~t~ 153 (347)
T KOG0647|consen 142 WDTRSSNPVATL 153 (347)
T ss_pred cccCCCCeeeee
Confidence 999987744443
No 98
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=4.6e-09 Score=74.79 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=69.9
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc--e------eccCCCcEEEEEecC--CcceeeeeeecccEEEEe
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT--L------PVSHNSTLEASFSQH--LSLVALSVLILRSWVLEG 79 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~--~------~~~~~~~~~~~fs~d--~~~~~~~~~~~~~~i~t~ 79 (106)
+|+.-|.++.|++.|+.+++++.|++++|||..+.. . +.+.+++..+.|.+- | +.|+++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfG-----------qvvA~c 79 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFG-----------QVVATC 79 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcccc-----------ceEEEE
Confidence 556689999999999999999999999999965433 2 557788888888743 6 999999
Q ss_pred cCCCcEEEEECCCCC-------------------CCcEEEeCCCC
Q 036317 80 SGDGSVYAWSARSGK-------------------EPPVIKWAPGS 105 (106)
Q Consensus 80 s~d~~i~~wd~~~~~-------------------~v~~i~~sp~~ 105 (106)
|.|+++.||+-+..+ .|..++|.|..
T Consensus 80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h 124 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH 124 (361)
T ss_pred ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh
Confidence 999999999873211 78888999875
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.2e-09 Score=79.29 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=68.2
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------------------------------------------
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------------------------------------------- 46 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------------------------------------------- 46 (106)
...|+++.|+++|.+|+++..++.+.|||..+.+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~ 296 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVST 296 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhh
Confidence 56899999999999999999999999999654332
Q ss_pred -eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCCC
Q 036317 47 -PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPGS 105 (106)
Q Consensus 47 -~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~~ 105 (106)
..|...++...|++|+ +++++|+-|+.+.|||..+.+ .|..++|+|-.
T Consensus 297 ~~~H~qeVCgLkws~d~-----------~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDG-----------NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred hhcccceeeeeEECCCC-----------CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc
Confidence 0123345667899999 999999999999999996544 89999999853
No 100
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.98 E-value=2.4e-09 Score=74.87 Aligned_cols=86 Identities=22% Similarity=0.375 Sum_probs=70.5
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.++.+.+.+|+|+-+|.++++++.|+++.+|+++.++. .++.+.+..++|+|.. ...+++++.|
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~----------~d~~atas~d 86 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH----------PDLFATASGD 86 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC----------CcceEEecCC
Confidence 35567999999999999999999999999999987765 4566677778888665 2678999999
Q ss_pred CcEEEEECCCCC---------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
.+|++||.+.++ .-..+.|+|.
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~ 117 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKGENINITWSPD 117 (313)
T ss_pred ceEEEEEeccCcEEEEeeccCcceEEEEcCC
Confidence 999999999998 3345567664
No 101
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.98 E-value=1.8e-09 Score=78.44 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=69.3
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
..+++++.+|..+.+++++.|..+++||..++.- .+|++.+.++.|+|.. ...+++|+.|+++
T Consensus 301 ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~----------~~~~~S~S~D~t~ 370 (423)
T KOG0313|consen 301 KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN----------EFQLVSGSYDNTV 370 (423)
T ss_pred cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC----------ceEEEEEecCCeE
Confidence 3789999999999999999999999999887643 5678888899999988 3568899999999
Q ss_pred EEEECCCCC-----------CCcEEEeCC
Q 036317 86 YAWSARSGK-----------EPPVIKWAP 103 (106)
Q Consensus 86 ~~wd~~~~~-----------~v~~i~~sp 103 (106)
++||+++.+ .|-+++|+.
T Consensus 371 klWDvRS~k~plydI~~h~DKvl~vdW~~ 399 (423)
T KOG0313|consen 371 KLWDVRSTKAPLYDIAGHNDKVLSVDWNE 399 (423)
T ss_pred EEEEeccCCCcceeeccCCceEEEEeccC
Confidence 999999876 666777754
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.97 E-value=2e-09 Score=78.85 Aligned_cols=65 Identities=23% Similarity=0.360 Sum_probs=58.2
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
.++.+.||||+.|+++|+.|+.++||+..++++ ...+..+.+++|+|.| ..+++++.++.+.+
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-----------~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-----------SGLLSADKQKAVTL 457 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-----------chhhcccCCcceEe
Confidence 689999999999999999999999999999998 2233357889999999 99999999999999
Q ss_pred EE
Q 036317 88 WS 89 (106)
Q Consensus 88 wd 89 (106)
|.
T Consensus 458 W~ 459 (459)
T KOG0288|consen 458 WT 459 (459)
T ss_pred cC
Confidence 93
No 103
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=3.9e-09 Score=73.39 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=59.6
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
+|+++-+.|..+-++.++.|+.++-||+++|+. ++|..++-.++--... ..|++|++||++++||
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~-----------~qilsG~EDGtvRvWd 184 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN-----------GQILSGAEDGTVRVWD 184 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC-----------cceeecCCCccEEEEe
Confidence 899999999988888888999999999999998 5566666555553444 5789999999999999
Q ss_pred CCCCC
Q 036317 90 ARSGK 94 (106)
Q Consensus 90 ~~~~~ 94 (106)
.++++
T Consensus 185 ~kt~k 189 (325)
T KOG0649|consen 185 TKTQK 189 (325)
T ss_pred ccccc
Confidence 99998
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=8.2e-09 Score=76.39 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceee---------------------
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVAL--------------------- 67 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~--------------------- 67 (106)
++|.+++-+|+|.++++++-.+.+++|.+.+|++ ..|.-.++.+.|+-||++++-
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 4566666666666666666666666666666665 334444555666666655441
Q ss_pred ---------------------eeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317 68 ---------------------SVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 68 ---------------------~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
..-....+|+|+|+|.+|++||+..|. .+.++..+|.
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpa 228 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPA 228 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccc
Confidence 001122568888888888888888887 6666666653
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=8.5e-09 Score=76.46 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=69.2
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCc--EEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNST--LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~--~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
+.|..+.|+.||+.+++++.+|+|.+||+.+... -...+.+ +.++.|+++ .++|+||..|-|.|
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng-----------~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG-----------SYLATGSDSGIVNI 413 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC-----------ceEEeccCcceEEE
Confidence 4789999999999999999999999999988766 1233333 457888999 99999999999999
Q ss_pred EECCCCC----------------CCcEEEeCCCC
Q 036317 88 WSARSGK----------------EPPVIKWAPGS 105 (106)
Q Consensus 88 wd~~~~~----------------~v~~i~~sp~~ 105 (106)
||.++.. .|..++|+|+.
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 9987654 88999999863
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1.1e-09 Score=84.67 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=76.7
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+.+|.+.|.++.|+++...+++++++|+|++||++.++. .++...++.+.|+|-+ .|.++|+.|
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-----------~~~a~gStd 133 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-----------EFFASGSTD 133 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-----------EEecccccc
Confidence 4567788999999999999999999999999999998886 5666778889999999 999999999
Q ss_pred CcEEEEECCC-CC---------CCcEEEeCCC
Q 036317 83 GSVYAWSARS-GK---------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~-~~---------~v~~i~~sp~ 104 (106)
..+.+||.+. |- .+.+++|+|+
T Consensus 134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD 165 (825)
T ss_pred ccceehhhhccCceeeecCCcceeEEEeecCC
Confidence 9999999983 32 6889999986
No 107
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.92 E-value=4.3e-09 Score=76.53 Aligned_cols=90 Identities=24% Similarity=0.365 Sum_probs=73.9
Q ss_pred eeecCCCCCCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317 5 IFSDGGDVSDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSW 75 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~ 75 (106)
.|+..+|+++=..++||| +|+ ++++--.+.|++|...+|.- .+|..++..+.|||.. +..
T Consensus 204 l~t~~ghk~EGy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE----------~~v 272 (440)
T KOG0302|consen 204 LFTFNGHKGEGYGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE----------DGV 272 (440)
T ss_pred eEEecccCccceeeecccccccc-cccCccccceEeeeeccCceeecCccccccccchhhhccCCcc----------Cce
Confidence 577888888889999999 455 66666678999999887764 3466778889999987 367
Q ss_pred EEEecCCCcEEEEECCCCC------------CCcEEEeCCCC
Q 036317 76 VLEGSGDGSVYAWSARSGK------------EPPVIKWAPGS 105 (106)
Q Consensus 76 i~t~s~d~~i~~wd~~~~~------------~v~~i~~sp~~ 105 (106)
++++|.|++|+|||++.++ .|+.|+|+.+.
T Consensus 273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~ 314 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE 314 (440)
T ss_pred EEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc
Confidence 8999999999999999984 78888888754
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=1.1e-08 Score=73.02 Aligned_cols=87 Identities=20% Similarity=0.291 Sum_probs=72.1
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeeccc--EEEE
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRS--WVLE 78 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~--~i~t 78 (106)
.|....|.+.|++++.+ |.|+++++.|.+|+|||..+... ..+.+.++++.|.+.- . .+++
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~-----------S~shLlS 102 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPL-----------SKSHLLS 102 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCc-----------chhheee
Confidence 46666777899998885 78999999999999999877655 4577888899999886 5 8999
Q ss_pred ecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 79 GSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
|++||.|.+|+..+=+ .|+.++.+|.
T Consensus 103 ~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 103 GSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred ecCCCcEEEEEcCCeEEeeeecccccccceeEecCC
Confidence 9999999999986532 7888888885
No 109
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.90 E-value=8.4e-09 Score=74.79 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=71.4
Q ss_pred ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
|+.+.+.||.+.|-+++|.. +.+++++.|.++++||+.+|+. ..|...+..+.|+ . .+++|
T Consensus 228 ~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-n------------g~mvt 292 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-N------------GYMVT 292 (499)
T ss_pred HHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-C------------CEEEE
Confidence 34566778999998888754 5889999999999999999998 3455667777777 3 47899
Q ss_pred ecCCCcEEEEECCCCC-------------CCcEEEeCCCC
Q 036317 79 GSGDGSVYAWSARSGK-------------EPPVIKWAPGS 105 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~~-------------~v~~i~~sp~~ 105 (106)
+|.|.+|.+||+.+.. .|+.++|+.+|
T Consensus 293 cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ky 332 (499)
T KOG0281|consen 293 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY 332 (499)
T ss_pred ecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccce
Confidence 9999999999999765 78888887664
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.89 E-value=3e-08 Score=68.45 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=56.9
Q ss_pred eEEEECCCCCeEEEE-eCCCeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEe-cCCCcEEEEEC
Q 036317 16 NEVKLSNDGRLMLLT-TLEGHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEG-SGDGSVYAWSA 90 (106)
Q Consensus 16 ~~v~~spdg~~l~~~-~~~~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~-s~d~~i~~wd~ 90 (106)
..++|+|||++++++ ..++.+.+||..++++. .....+..++|+|+| ++|+++ ..+++|++||+
T Consensus 210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDE-----------KYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCC-----------CEEEEEcCCCCeEEEEEC
Confidence 468899999986554 45678999999888771 223356679999999 998876 46899999999
Q ss_pred CCCCCCcEEE
Q 036317 91 RSGKEPPVIK 100 (106)
Q Consensus 91 ~~~~~v~~i~ 100 (106)
++++.+..++
T Consensus 279 ~~~~~~~~~~ 288 (300)
T TIGR03866 279 AALKVIKSIK 288 (300)
T ss_pred CCCcEEEEEE
Confidence 9998444444
No 111
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=1.6e-08 Score=75.69 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=72.1
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
.+-+.|.+++.+|||++++++.+..++.++|+.+|++ +...+-++...|||++.|+|++++. |-....|
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~-------gy~tq~I 471 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE-------GYYTQSI 471 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc-------ceeeeeE
Confidence 3346899999999999999999999999999999998 3455667889999999888877772 2234589
Q ss_pred EEEECCCCC-----CCcEEEeCCCC
Q 036317 86 YAWSARSGK-----EPPVIKWAPGS 105 (106)
Q Consensus 86 ~~wd~~~~~-----~v~~i~~sp~~ 105 (106)
+++|+..++ ....-+|+|.|
T Consensus 472 klydm~~~Kiy~vTT~ta~DfsPaF 496 (668)
T COG4946 472 KLYDMDGGKIYDVTTPTAYDFSPAF 496 (668)
T ss_pred EEEecCCCeEEEecCCcccccCccc
Confidence 999999988 55666777765
No 112
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.88 E-value=1.7e-08 Score=72.52 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=68.8
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce-----ecc---CCCcEEEEEecCCcceeeeeeecccEE
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL-----PVS---HNSTLEASFSQHLSLVALSVLILRSWV 76 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~-----~~~---~~~~~~~~fs~d~~~~~~~~~~~~~~i 76 (106)
+-+.++.+.|+.+.|.+||+++.+++ .+..|..||+..-+. ..+ .+.-+.....|++ +++
T Consensus 244 ~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-----------~~L 312 (406)
T KOG2919|consen 244 QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-----------EIL 312 (406)
T ss_pred eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-----------cee
Confidence 34557788999999999999998887 578999999976443 222 2222335667999 999
Q ss_pred EEecCCCcEEEEECCC-CC----------CCcEEEeCCC
Q 036317 77 LEGSGDGSVYAWSARS-GK----------EPPVIKWAPG 104 (106)
Q Consensus 77 ~t~s~d~~i~~wd~~~-~~----------~v~~i~~sp~ 104 (106)
++|+.||.|++||+++ |. .++.++++|.
T Consensus 313 asG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred eccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 9999999999999998 55 6778888874
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=1.9e-08 Score=71.87 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=72.6
Q ss_pred CCCCCeeEEEECCCCC--eEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 10 GDVSDANEVKLSNDGR--LMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~--~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
.|.+.|+++.|.++-. +|++++.||.|.+|+...-+. ..|.+.++.++++|.+ +..++.+.|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-----------KLALsVg~D~ 149 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-----------KLALSVGGDQ 149 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC-----------ceEEEEcCCc
Confidence 4567999999999865 899999999999999866544 5577778899999999 9999999999
Q ss_pred cEEEEECCCCC---------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
.+++|++-.|+ ....+.|+|+
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~ 179 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNKATLVSWSPQ 179 (362)
T ss_pred eeeeehhhcCccceeeccCCcceeeEEcCC
Confidence 99999999998 5566888876
No 114
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.87 E-value=2.2e-08 Score=72.49 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=64.8
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeE-EEEEcCCCce--ecc----CCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHI-HVLHSFQGTL--PVS----HNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i-~l~d~~~~~~--~~~----~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
..++.|++.+.+++|+++|.++|+++..|+| +++.+.+|+. ... ...+.+++|+||+ +++.+
T Consensus 167 ~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds-----------~~L~~ 235 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS-----------QFLAA 235 (391)
T ss_pred eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC-----------CeEEE
Confidence 3456788999999999999999999988875 7999988877 212 2235679999999 99999
Q ss_pred ecCCCcEEEEECCCCC
Q 036317 79 GSGDGSVYAWSARSGK 94 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~~ 94 (106)
.|..++|+++.++.-.
T Consensus 236 sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS 251 (391)
T ss_pred ecCCCeEEEEEecccc
Confidence 9999999999998644
No 115
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=2.1e-08 Score=74.56 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=61.5
Q ss_pred CCCCCCeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 9 GGDVSDANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
.+|..++..+.|+|+++.+ ++++.|+.+++||+.++.+ ..+..++.+.+|+|.. +..++|||+||
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~----------~hivvtGsYDg 176 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN----------DHIVVTGSYDG 176 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC----------CeEEEecCCCc
Confidence 3566799999999976655 4666778889999988876 5677888888999886 25899999999
Q ss_pred cEEEEECCCC
Q 036317 84 SVYAWSARSG 93 (106)
Q Consensus 84 ~i~~wd~~~~ 93 (106)
+|++||+++.
T Consensus 177 ~vrl~DtR~~ 186 (487)
T KOG0310|consen 177 KVRLWDTRSL 186 (487)
T ss_pred eEEEEEeccC
Confidence 9999999976
No 116
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.87 E-value=5.8e-09 Score=76.28 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=67.5
Q ss_pred ecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+.+|..+|..|+|+|.. +.|++++.|.+|.+||+.+|+. ..|...+.+++|+.|| ..++|.+.|
T Consensus 126 ~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG-----------s~l~TtckD 194 (472)
T KOG0303|consen 126 ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG-----------SLLCTTCKD 194 (472)
T ss_pred EEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCC-----------ceeeeeccc
Confidence 356777799999999974 5667889999999999999987 3366677899999999 999999999
Q ss_pred CcEEEEECCCCC
Q 036317 83 GSVYAWSARSGK 94 (106)
Q Consensus 83 ~~i~~wd~~~~~ 94 (106)
..|+|||.++|+
T Consensus 195 KkvRv~dpr~~~ 206 (472)
T KOG0303|consen 195 KKVRVIDPRRGT 206 (472)
T ss_pred ceeEEEcCCCCc
Confidence 999999999988
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=1.8e-08 Score=77.23 Aligned_cols=74 Identities=11% Similarity=0.196 Sum_probs=66.1
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
|++..|.+++.++.|..+++++-++-+++||..+++. .+|..-+..+..+.|| +.++++|.||+|
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG-----------t~~ls~sSDgtI 237 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG-----------TRLLSASSDGTI 237 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC-----------CeEeecCCCceE
Confidence 6777999999999999999999999999999998765 5677677778899999 999999999999
Q ss_pred EEEECCCCC
Q 036317 86 YAWSARSGK 94 (106)
Q Consensus 86 ~~wd~~~~~ 94 (106)
++||+...+
T Consensus 238 rlWdLgqQr 246 (735)
T KOG0308|consen 238 RLWDLGQQR 246 (735)
T ss_pred Eeeeccccc
Confidence 999997655
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.86 E-value=1.3e-08 Score=75.26 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=66.2
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
+|..++-+++.||||+|+++++.|..++|||..+.+. ..+.+.+.+.+|-... ..+.+++.|++|
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-----------~~lys~s~Drsv 268 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-----------SELYSASADRSV 268 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-----------cceeeeecCCce
Confidence 6667999999999999999999999999999999876 5677888889999887 889999999999
Q ss_pred EEEECCCCC
Q 036317 86 YAWSARSGK 94 (106)
Q Consensus 86 ~~wd~~~~~ 94 (106)
++|+++...
T Consensus 269 kvw~~~~~s 277 (479)
T KOG0299|consen 269 KVWSIDQLS 277 (479)
T ss_pred EEEehhHhH
Confidence 999997643
No 119
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.86 E-value=1.5e-08 Score=78.77 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=76.8
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+.||+=+|.+++.|||++.+++++.|+++++|-+.=|.. ..|..+++++.|-|+. ..+.|++.|
T Consensus 545 sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~-----------~~FFt~gKD 613 (888)
T KOG0306|consen 545 SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT-----------HLFFTCGKD 613 (888)
T ss_pred eecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc-----------eeEEEecCc
Confidence 3468888999999999999999999999999999887776 4467788999999999 999999999
Q ss_pred CcEEEEECCCCC----------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+.|+-||-+.-+ .|+|++.+|+
T Consensus 614 ~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 614 GKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred ceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence 999999877644 8888888876
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=8.3e-09 Score=71.65 Aligned_cols=84 Identities=14% Similarity=0.303 Sum_probs=74.0
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEec--CCcceeeeeeecccEEEEec
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQ--HLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~--d~~~~~~~~~~~~~~i~t~s 80 (106)
+|..-|.+++++--|+.|++++.|++|+|+....... .++.+++..+.|.+ .| .+|++++
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-----------~iLAScs 77 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-----------TILASCS 77 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-----------cEeeEee
Confidence 4556788888999999999999999999999875432 67889999999997 78 9999999
Q ss_pred CCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317 81 GDGSVYAWSARSGK------------EPPVIKWAPG 104 (106)
Q Consensus 81 ~d~~i~~wd~~~~~------------~v~~i~~sp~ 104 (106)
+||.|-||..+.|+ .|++++|.|.
T Consensus 78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waph 113 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPH 113 (299)
T ss_pred cCceEEEEecCCCchhhhhhhhhhcccceeeccccc
Confidence 99999999999987 8899999884
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.85 E-value=4.2e-09 Score=79.16 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=68.1
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
....++.|||.+...+.+.||.|.|||+.+..+ +++.....++.+++|| ..|-||+-|.+|+.||
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG-----------tklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG-----------TKLWTGGLDNTVRCWD 579 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-----------ceeecCCCccceeehh
Confidence 345789999999999999999999999987765 5666667778999999 9999999999999999
Q ss_pred CCCCC---------CCcEEEeCCC
Q 036317 90 ARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 90 ~~~~~---------~v~~i~~sp~ 104 (106)
+++++ .|-++.++|+
T Consensus 580 lregrqlqqhdF~SQIfSLg~cP~ 603 (705)
T KOG0639|consen 580 LREGRQLQQHDFSSQIFSLGYCPT 603 (705)
T ss_pred hhhhhhhhhhhhhhhheecccCCC
Confidence 99997 5566666654
No 122
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.1e-08 Score=74.67 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=61.1
Q ss_pred eEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317 16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR 91 (106)
Q Consensus 16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~ 91 (106)
..++|+.||..+++++.||.+++|+..+... ..+++.+.++.||||| ++|++-+.| ..+||+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-----------k~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-----------KFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-----------cEEEEecCC-ceEEEEec
Confidence 6899999999999999999999999766655 5678888999999999 999999999 99999999
Q ss_pred CCC
Q 036317 92 SGK 94 (106)
Q Consensus 92 ~~~ 94 (106)
+|.
T Consensus 216 ~g~ 218 (398)
T KOG0771|consen 216 TGA 218 (398)
T ss_pred cCc
Confidence 994
No 123
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=6.8e-08 Score=71.87 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=70.0
Q ss_pred eeecCCCCCCeeEEEECCCCCe-EEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 5 IFSDGGDVSDANEVKLSNDGRL-MLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
..++.+|..-|++.+++|...+ +++++.||.|++||...... .++..++..+.+-|.| ..|+++
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg-----------s~iasA 214 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG-----------SLIASA 214 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC-----------CEEEEc
Confidence 4567788889999999998764 57888999999999876632 3344566778999999 999998
Q ss_pred cCCCcEEEEECCCCC-----------CCcEEEeCC
Q 036317 80 SGDGSVYAWSARSGK-----------EPPVIKWAP 103 (106)
Q Consensus 80 s~d~~i~~wd~~~~~-----------~v~~i~~sp 103 (106)
+.+ .|++||+.+|. .|.|+++..
T Consensus 215 gGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 215 GGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred CCC-eEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 766 89999999664 788888865
No 124
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=6e-08 Score=74.46 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=73.8
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
..+.|..-|++++.+|..-++++++.|-+|++||.+..-. .+|...++.++|.|.. ...++++|-
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD----------~ntFaS~sL 161 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD----------PNTFASASL 161 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC----------ccceeeeec
Confidence 3456777899999999999999999999999999876643 5677788999999875 278999999
Q ss_pred CCcEEEEECCCCC----------CCcEEEeCC
Q 036317 82 DGSVYAWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 82 d~~i~~wd~~~~~----------~v~~i~~sp 103 (106)
|++|++|.+.+.. .|+|+.|-|
T Consensus 162 DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~ 193 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT 193 (794)
T ss_pred cccEEEEEcCCCCCceeeeccccCcceEEecc
Confidence 9999999997654 788888754
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.80 E-value=1.5e-07 Score=64.97 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=60.6
Q ss_pred CeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEE-ecCCCcEEEE
Q 036317 14 DANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLE-GSGDGSVYAW 88 (106)
Q Consensus 14 ~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t-~s~d~~i~~w 88 (106)
.+..++|+|||+.++ ++..++.+.+||..+++.. .....+..+.|+|++ +.++. ++.++.+++|
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG-----------KILYIANEDDNLVTVI 100 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC-----------CEEEEEcCCCCeEEEE
Confidence 467899999999874 5567899999999888761 122234568899999 87654 4568899999
Q ss_pred ECCCCC---------CCcEEEeCCC
Q 036317 89 SARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 89 d~~~~~---------~v~~i~~sp~ 104 (106)
|+++++ .+..++|+|+
T Consensus 101 d~~~~~~~~~~~~~~~~~~~~~~~d 125 (300)
T TIGR03866 101 DIETRKVLAEIPVGVEPEGMAVSPD 125 (300)
T ss_pred ECCCCeEEeEeeCCCCcceEEECCC
Confidence 999865 3567788875
No 126
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.78 E-value=7.4e-08 Score=68.80 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=66.1
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCe-EEEEEcCCCce-----ec-cCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGH-IHVLHSFQGTL-----PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~-i~l~d~~~~~~-----~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
.+..|.++|.+++++-+|..+|+++..|+ |+|||..+|+. .+ .+..+..++|||+. .+++.+
T Consensus 176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~-----------s~Lavs 244 (346)
T KOG2111|consen 176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS-----------SWLAVS 244 (346)
T ss_pred EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc-----------cEEEEE
Confidence 45678899999999999999999998876 58999999987 11 34567789999999 999999
Q ss_pred cCCCcEEEEECCCCC
Q 036317 80 SGDGSVYAWSARSGK 94 (106)
Q Consensus 80 s~d~~i~~wd~~~~~ 94 (106)
|+-|++.|+.++...
T Consensus 245 SdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 245 SDKGTLHIFSLRDTE 259 (346)
T ss_pred cCCCeEEEEEeecCC
Confidence 999999999998744
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.78 E-value=2.5e-08 Score=71.04 Aligned_cols=79 Identities=13% Similarity=0.231 Sum_probs=65.2
Q ss_pred eeecCCCCCCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCC--ce-----------------eccCCCcEEEEEecCCcc
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLML-LTTLEGHIHVLHSFQG--TL-----------------PVSHNSTLEASFSQHLSL 64 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~--~~-----------------~~~~~~~~~~~fs~d~~~ 64 (106)
+..+.||++.|-+|+|+|..++++ +++.|+.+++||+... .+ +.+.+.+..++|+.|+
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-- 258 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-- 258 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc--
Confidence 356789999999999999999885 6689999999998754 22 1133445568889999
Q ss_pred eeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 65 VALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 65 ~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
+++++.+-|..+++|+.++|+
T Consensus 259 ---------~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 259 ---------RYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ---------hhhhhccCccceEEeecccCc
Confidence 999999999999999999987
No 128
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.78 E-value=1.5e-08 Score=70.97 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=60.8
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
.|+.+..-||++.+++++.|+.+++|+.++.+. ..|.+.+.+++|+||. ..++.+|+|+.|.+|+
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-----------~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-----------ELMAAASKDARISLWK 321 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-----------chhhhccCCceEEeee
Confidence 688899999999999999999999999999887 5567788899999998 8999999999999999
Q ss_pred C
Q 036317 90 A 90 (106)
Q Consensus 90 ~ 90 (106)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 7
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=3.6e-08 Score=70.94 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=65.6
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
.+.||..+.+.+.-+|..+.+++++.|.+.++||....-. +++...+++++|..|. .|++||+
T Consensus 309 ~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd------------~vVSgSD 376 (481)
T KOG0300|consen 309 ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD------------RVVSGSD 376 (481)
T ss_pred cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC------------ceeecCC
Confidence 3467788999999999999999999999999999764322 6678889999999886 5789999
Q ss_pred CCcEEEEECCCCC
Q 036317 82 DGSVYAWSARSGK 94 (106)
Q Consensus 82 d~~i~~wd~~~~~ 94 (106)
|.+|++||+++..
T Consensus 377 DrTvKvWdLrNMR 389 (481)
T KOG0300|consen 377 DRTVKVWDLRNMR 389 (481)
T ss_pred CceEEEeeecccc
Confidence 9999999999876
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=2.4e-07 Score=66.50 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecC--Ccceeee---------------
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQH--LSLVALS--------------- 68 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d--~~~~~~~--------------- 68 (106)
.+|.-+|.+++||+||++|++++.|..+.+||+..|.. .....++..+.|+|. .|++++-
T Consensus 62 saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h 141 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH 141 (405)
T ss_pred hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence 35666999999999999999999999999999998876 122233444444433 2222210
Q ss_pred -------------------eeecccEEEEecCCCcEEEEECCCCC
Q 036317 69 -------------------VLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 69 -------------------~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
+-...++|.+|-.-|.+.++|.++-+
T Consensus 142 ~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e 186 (405)
T KOG1273|consen 142 SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE 186 (405)
T ss_pred eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhe
Confidence 12223899999999999999999877
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=1.9e-08 Score=74.16 Aligned_cols=72 Identities=21% Similarity=0.397 Sum_probs=51.8
Q ss_pred CCCeEEEEeCCCeEEEEEcCCCce------ec-------------------cCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317 23 DGRLMLLTTLEGHIHVLHSFQGTL------PV-------------------SHNSTLEASFSQHLSLVALSVLILRSWVL 77 (106)
Q Consensus 23 dg~~l~~~~~~~~i~l~d~~~~~~------~~-------------------~~~~~~~~~fs~d~~~~~~~~~~~~~~i~ 77 (106)
.|+|+|+++++..|.|||+.-... .+ |...+..++|... .|..++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~----------~~nVLa 260 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN----------FRNVLA 260 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc----------cceeEE
Confidence 378999999999999999753221 00 1111122233322 247899
Q ss_pred EecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 78 EGSGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 78 t~s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+||.|.+|++||+.+|+ .|++++|+|.
T Consensus 261 SgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~ 297 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY 297 (463)
T ss_pred ecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC
Confidence 99999999999999998 8999999986
No 132
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.72 E-value=5e-08 Score=75.28 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=69.6
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCC-----eEEEEEcCCCc----eeccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEG-----HIHVLHSFQGT----LPVSHNSTLEASFSQHLSLVALSVLILRSWV 76 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~-----~i~l~d~~~~~----~~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i 76 (106)
-++.||..+|.+++.||+|+.+++++... .|.+|+..+=. ++.|.-.++.+.||||| ++|
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg-----------~~L 587 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG-----------RYL 587 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC-----------cEE
Confidence 45678888999999999999999987653 56788865432 25566677889999999 999
Q ss_pred EEecCCCcEEEEECCCCC--------------CCcEEEeCCC
Q 036317 77 LEGSGDGSVYAWSARSGK--------------EPPVIKWAPG 104 (106)
Q Consensus 77 ~t~s~d~~i~~wd~~~~~--------------~v~~i~~sp~ 104 (106)
++.|.|+++.+|....+. .|..-+|+|+
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 999999999999886543 4555566665
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.71 E-value=1.5e-07 Score=73.39 Aligned_cols=82 Identities=9% Similarity=0.142 Sum_probs=74.0
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
..+.+++..|..++++++++|..|+|+|+.+|+. ..+.+..+.+...|.| -||+|...|.++
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-----------iY~atScsdktl 665 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-----------IYLATSCSDKTL 665 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-----------cEEEEeecCCce
Confidence 4788999999999999999999999999999987 2345778889999999 999999999999
Q ss_pred EEEECCCCC----------CCcEEEeCCCC
Q 036317 86 YAWSARSGK----------EPPVIKWAPGS 105 (106)
Q Consensus 86 ~~wd~~~~~----------~v~~i~~sp~~ 105 (106)
.++|..+|+ .|..++|.|+.
T Consensus 666 ~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 666 CFVDFVSGECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred EEEEeccchhhhhhcCcchheeeeeecccc
Confidence 999999998 88899998864
No 134
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.71 E-value=6.6e-08 Score=74.99 Aligned_cols=79 Identities=20% Similarity=0.377 Sum_probs=68.1
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
-|.+++|-|||.-++.+. +..+.++|.-+|.. .+|+..+..++|+.|| +.+++|+.|..|-+|.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-----------krFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-----------KRFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCC-----------ceeccCCCceeEEEec
Confidence 799999999999777655 56699999988876 6678888899999999 9999999999999998
Q ss_pred CCC-CC-------CCcEEEeCCC
Q 036317 90 ARS-GK-------EPPVIKWAPG 104 (106)
Q Consensus 90 ~~~-~~-------~v~~i~~sp~ 104 (106)
-+- |. .|+|+.|+|-
T Consensus 82 ~klEG~LkYSH~D~IQCMsFNP~ 104 (1081)
T KOG1538|consen 82 SKLEGILKYSHNDAIQCMSFNPI 104 (1081)
T ss_pred ccccceeeeccCCeeeEeecCch
Confidence 763 32 9999999994
No 135
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=2e-07 Score=64.63 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
+.|.+++.+|.|+.++++-.|...-+||+..++. ..+...+..+.|||.. .|++++|+|..|++=
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a-----------~yllt~syd~~iklt 300 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA-----------HYLLTCSYDMKIKLT 300 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCc-----------eEEEEecccceEEEe
Confidence 4799999999999999999999999999999887 2244566779999999 999999999999999
Q ss_pred ECCCCC--------------CCcEEEeCCC
Q 036317 89 SARSGK--------------EPPVIKWAPG 104 (106)
Q Consensus 89 d~~~~~--------------~v~~i~~sp~ 104 (106)
|++..- .+..++|+|+
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEecCc
Confidence 998432 5666788876
No 136
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.71 E-value=1.7e-07 Score=71.91 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=36.3
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~ 46 (106)
+.+|.+.|..++|..-+.++++++.|.++++||..+|+.
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 678999999999998888899999999999999999987
No 137
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.71 E-value=9.9e-08 Score=69.33 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=63.8
Q ss_pred CeeEEEECCCCCeEEEE-eCCCeEEEEEcCCCce----------------------------------------------
Q 036317 14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSFQGTL---------------------------------------------- 46 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~~~~~---------------------------------------------- 46 (106)
.|.++.|+|-..-++.+ +.|+.|.|+|..++..
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence 67888888887666544 4888999999876653
Q ss_pred eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317 47 PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 47 ~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~~ 105 (106)
..+...++++.|||.| +.+++||.|.+|+|+....+. .|.|++||-++
T Consensus 269 ~dhvsAV~dVdfsptG-----------~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTG-----------QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred cccceeEEEeccCCCc-----------chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc
Confidence 1122356778999999 999999999999999999876 88899998653
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=2e-07 Score=67.08 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=70.2
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC-------ce------e--ccCCCcEEEEEecCCcceeeee
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG-------TL------P--VSHNSTLEASFSQHLSLVALSV 69 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~-------~~------~--~~~~~~~~~~fs~d~~~~~~~~ 69 (106)
.|++.||.+.|..++|||+.+.+++.+.||..++||..-. +. + ...+.++.+..+|.|
T Consensus 271 vf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g------- 343 (420)
T KOG2096|consen 271 VFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG------- 343 (420)
T ss_pred hheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-------
Confidence 4889999999999999999999999999999999996311 11 1 122345678999999
Q ss_pred eecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317 70 LILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 70 ~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
+.++.++ ..+++++..++|+ .|.+|+|+|+
T Consensus 344 ----~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 344 ----DSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred ----cEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 7766554 4489999999987 8999999984
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=1.7e-07 Score=72.06 Aligned_cols=78 Identities=13% Similarity=0.233 Sum_probs=67.7
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
+......+.|.+++.+|.+..+++++.||.+..++...++. ...++++.+++|+|++ ..|++|
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-----------~~i~~G 172 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-----------TKIAGG 172 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc-----------cEEEec
Confidence 34444556899999999999999999999888888888877 3355788999999999 999999
Q ss_pred cCCCcEEEEECCCCC
Q 036317 80 SGDGSVYAWSARSGK 94 (106)
Q Consensus 80 s~d~~i~~wd~~~~~ 94 (106)
+.||.|++||.++++
T Consensus 173 s~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQ 187 (691)
T ss_pred ccCceEEEEEcCCCc
Confidence 999999999999987
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.70 E-value=1.1e-07 Score=68.33 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=71.0
Q ss_pred eeeecCCCCCCeeEEEECCCC----CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317 4 DIFSDGGDVSDANEVKLSNDG----RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSW 75 (106)
Q Consensus 4 ~~~~~~~~~~~v~~v~~spdg----~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~ 75 (106)
+.|.-+.+......++|+-|- -++++++..|.|++.|..+++. .++-..+.++.|.|+. .+.
T Consensus 81 q~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~----------~ql 150 (385)
T KOG1034|consen 81 QSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR----------PQL 150 (385)
T ss_pred eeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC----------CcE
Confidence 334334344467788887553 3678888999999999998887 4455567789999986 478
Q ss_pred EEEecCCCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317 76 VLEGSGDGSVYAWSARSGK-------------EPPVIKWAPG 104 (106)
Q Consensus 76 i~t~s~d~~i~~wd~~~~~-------------~v~~i~~sp~ 104 (106)
|+++|+|.+|++|+++++. .|-+++|+++
T Consensus 151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 9999999999999999987 7888888875
No 141
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=2.5e-07 Score=68.84 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=59.3
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CC
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GD 82 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d 82 (106)
.+...+.+.+|||||++++.++.+ .++++||+.+++. ....+....+.|+||| +.|+.++ .+
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG-----------~~La~~~~~~ 269 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG-----------SRLAFASSKD 269 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC-----------CEEEEEEecC
Confidence 334578999999999999887644 4799999988764 2122233458999999 8777654 57
Q ss_pred CcE--EEEECCCCC---------CCcEEEeCCC
Q 036317 83 GSV--YAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i--~~wd~~~~~---------~v~~i~~sp~ 104 (106)
+.+ ++||+.+++ .+....|+|+
T Consensus 270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred CcEEEEEEECCCCCeEeeccCCCCcCCEEECCC
Confidence 754 455776655 4567788875
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=1.2e-07 Score=73.97 Aligned_cols=83 Identities=13% Similarity=0.254 Sum_probs=68.3
Q ss_pred CCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 13 SDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 13 ~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
-.++.+.|++. -.+++++++|+.|++||....+- .....++..+.|+|.. ..+++++.++|.+++
T Consensus 134 Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~----------~~~F~s~~dsG~lql 203 (839)
T KOG0269|consen 134 RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY----------GNKFASIHDSGYLQL 203 (839)
T ss_pred cceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC----------CceEEEecCCceEEE
Confidence 47999999885 56778999999999999976554 3345567789999764 277899999999999
Q ss_pred EECCCCC-----------CCcEEEeCCCC
Q 036317 88 WSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 88 wd~~~~~-----------~v~~i~~sp~~ 105 (106)
||++... +|-|+.|+|+.
T Consensus 204 WDlRqp~r~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 204 WDLRQPDRCEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred eeccCchhHHHHhhcccCceEEEeecCCC
Confidence 9999765 99999999964
No 143
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=2.4e-07 Score=64.18 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=60.6
Q ss_pred ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEE------cCCCce-------------eccCCCcEEEEEecCCc
Q 036317 3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLH------SFQGTL-------------PVSHNSTLEASFSQHLS 63 (106)
Q Consensus 3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d------~~~~~~-------------~~~~~~~~~~~fs~d~~ 63 (106)
|.-.++..+...|++++|+|.|...+++++.+++++.. ...+.. ..+.+++...+|||+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g- 101 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG- 101 (350)
T ss_pred eEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-
Confidence 43444445567999999999999999999999998653 333322 2356788889999999
Q ss_pred ceeeeeeecccEEEEecCCCcEEEEECC
Q 036317 64 LVALSVLILRSWVLEGSGDGSVYAWSAR 91 (106)
Q Consensus 64 ~~~~~~~~~~~~i~t~s~d~~i~~wd~~ 91 (106)
+.|++||.|.+|++-...
T Consensus 102 ----------eliatgsndk~ik~l~fn 119 (350)
T KOG0641|consen 102 ----------ELIATGSNDKTIKVLPFN 119 (350)
T ss_pred ----------CeEEecCCCceEEEEecc
Confidence 999999999999987554
No 144
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.8e-07 Score=68.44 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=66.6
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCC-cEEEEEecCC---ccee--------------
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNS-TLEASFSQHL---SLVA-------------- 66 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~-~~~~~fs~d~---~~~~-------------- 66 (106)
.|+++|.++.|||||+++++.+.+ ..+||+..+|.. +..... ...|-|+.|+ .|..
T Consensus 184 ~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 184 AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence 456799999999999999999999 899999998833 111111 1123333333 1111
Q ss_pred ------------------------eeeeecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317 67 ------------------------LSVLILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 67 ------------------------~~~~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~~ 105 (106)
++.....++++-|.-||.|.|++..+.+ .|..+.|+|+.
T Consensus 263 ~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds 336 (398)
T KOG0771|consen 263 ISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS 336 (398)
T ss_pred eeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc
Confidence 0111111899999999999999999887 88999999975
No 145
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.67 E-value=1e-07 Score=47.76 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=32.2
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEE
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLH 40 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d 40 (106)
..+.+|.+.|++++|+|+++++++++.|+.+++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45677889999999999999999999999999997
No 146
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=4.4e-07 Score=63.21 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=75.3
Q ss_pred eecCCCCCCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317 6 FSDGGDVSDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVL 77 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~ 77 (106)
-++.||.++|..++|.- -|..|++++.|+.+-||.-+.|+. ..+..++.+++|.|.+ +...++
T Consensus 50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphe---------ygl~La 120 (299)
T KOG1332|consen 50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHE---------YGLLLA 120 (299)
T ss_pred eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccc---------cceEEE
Confidence 45678889999999964 699999999999999999988865 3466788889888874 116789
Q ss_pred EecCCCcEEEEECCCC-C------------CCcEEEeCCCC
Q 036317 78 EGSGDGSVYAWSARSG-K------------EPPVIKWAPGS 105 (106)
Q Consensus 78 t~s~d~~i~~wd~~~~-~------------~v~~i~~sp~~ 105 (106)
+++.||.|.+.+.++. . .|++++|.|..
T Consensus 121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 9999999999998865 3 78899998863
No 147
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.66 E-value=1.8e-07 Score=66.95 Aligned_cols=84 Identities=13% Similarity=0.315 Sum_probs=72.6
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
..+|++.+|++|+.-++++.++++++|+....... ..|...++.+.|+|.. ..|++++.|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-----------nrIvtcs~drn 78 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-----------NRIVTCSHDRN 78 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-----------CceeEccCCCC
Confidence 45899999999999999999999999998776663 4466677889999999 99999999999
Q ss_pred EEEEEC-CCCC------------CCcEEEeCCCCC
Q 036317 85 VYAWSA-RSGK------------EPPVIKWAPGSL 106 (106)
Q Consensus 85 i~~wd~-~~~~------------~v~~i~~sp~~~ 106 (106)
.++|.. +.++ ...+++|+|+.+
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en 113 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN 113 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecCcCc
Confidence 999999 4454 789999999753
No 148
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.66 E-value=5.7e-08 Score=73.62 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=65.1
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCccee-----------------
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVA----------------- 66 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~----------------- 66 (106)
+..|.+.+.+-.|+|||.-+++++.||.|++|.- +|-+ -....++.++.|.|+.+-+.
T Consensus 100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k 178 (737)
T KOG1524|consen 100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSK 178 (737)
T ss_pred hhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccc
Confidence 3455667888899999999999999999999973 3322 01111222333333322111
Q ss_pred -------------eeeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317 67 -------------LSVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPGS 105 (106)
Q Consensus 67 -------------~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~~ 105 (106)
+.|......|++|++|-..++||..... +|.+++|+|.-
T Consensus 179 ~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 179 IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEK 239 (737)
T ss_pred eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeecccc
Confidence 1222222889999999999999987433 99999999973
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.65 E-value=3.5e-08 Score=76.13 Aligned_cols=74 Identities=9% Similarity=0.143 Sum_probs=65.4
Q ss_pred CCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 10 GDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 10 ~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
+|...|.++.|+|- .+.+++++.|-+|++||+.+++. .+|.+.+..++||||| +.++|.+.||+
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-----------r~~AtVcKDg~ 743 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-----------RRIATVCKDGT 743 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-----------cceeeeecCce
Confidence 34558999999996 56778999999999999998876 6678888899999999 99999999999
Q ss_pred EEEEECCCCC
Q 036317 85 VYAWSARSGK 94 (106)
Q Consensus 85 i~~wd~~~~~ 94 (106)
+++++-++++
T Consensus 744 ~rVy~Prs~e 753 (1012)
T KOG1445|consen 744 LRVYEPRSRE 753 (1012)
T ss_pred EEEeCCCCCC
Confidence 9999988776
No 150
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.63 E-value=2.7e-07 Score=68.47 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=64.1
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------------------e--ccCCCcEEEEEecCCcceee
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------------------P--VSHNSTLEASFSQHLSLVAL 67 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------------------~--~~~~~~~~~~fs~d~~~~~~ 67 (106)
.|.-.+.+|+++||+++.++++.+++|.=|++.+|+. + .|...+..++.|+||
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg----- 214 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG----- 214 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-----
Confidence 4455899999999999999999999999999888763 1 233445678999999
Q ss_pred eeeecccEEEEecCCCcEEEEECCCCCC
Q 036317 68 SVLILRSWVLEGSGDGSVYAWSARSGKE 95 (106)
Q Consensus 68 ~~~~~~~~i~t~s~d~~i~~wd~~~~~~ 95 (106)
+||++|+.|..|.||+.++++.
T Consensus 215 ------kylatgg~d~~v~Iw~~~t~eh 236 (479)
T KOG0299|consen 215 ------KYLATGGRDRHVQIWDCDTLEH 236 (479)
T ss_pred ------cEEEecCCCceEEEecCcccch
Confidence 9999999999999999999983
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.63 E-value=4.4e-08 Score=75.57 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=67.8
Q ss_pred CCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 13 SDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 13 ~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
..|+++.|+| |.+.+++++.|+.|++|.+..+-. ..+...++.+.|+|-. -..+++++
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA----------advLa~as 697 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA----------ADVLAVAS 697 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh----------hhHhhhhh
Confidence 3789999998 777899999999999999876544 2344567778888764 26788999
Q ss_pred CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 81 GDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 81 ~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+|.+|++||+.+++ .|-.++|||.
T Consensus 698 yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred ccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence 99999999999987 8899999986
No 152
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=7.7e-07 Score=66.26 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=60.3
Q ss_pred CCCCeeEEEECCCCCeEEEEeC---CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCC
Q 036317 11 DVSDANEVKLSNDGRLMLLTTL---EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDG 83 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~---~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~ 83 (106)
+...+...+|||||+.++..+. +..+++||+.+++. ....+......|+||| +.|+ +.+.++
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG-----------~~la~~~~~~g 268 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG-----------RKVVMSLSQGG 268 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC-----------CEEEEEEecCC
Confidence 3457899999999999887763 46899999988876 2233444568999999 7654 444554
Q ss_pred --cEEEEECCCCC---------CCcEEEeCCC
Q 036317 84 --SVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 84 --~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
.|++||+++++ ......|+|+
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spD 300 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPD 300 (435)
T ss_pred CceEEEEECCCCceEEccCCCCccCceeEcCC
Confidence 58888998776 3445677775
No 153
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.4e-07 Score=64.82 Aligned_cols=74 Identities=24% Similarity=0.436 Sum_probs=59.2
Q ss_pred CCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 11 DVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 11 ~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
|+.+|.++.|++. ++.+++++.|++|++|+...++- .++...+..+.|+|.. ...++++|.|+++
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~----------~nlfas~Sgd~~l 172 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI----------PNLFASASGDGTL 172 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC----------CCeEEEccCCceE
Confidence 4569999999985 66678889999999999865544 4455566789999775 3788999999999
Q ss_pred EEEECCC-CC
Q 036317 86 YAWSARS-GK 94 (106)
Q Consensus 86 ~~wd~~~-~~ 94 (106)
++||++. |+
T Consensus 173 ~lwdvr~~gk 182 (311)
T KOG0277|consen 173 RLWDVRSPGK 182 (311)
T ss_pred EEEEecCCCc
Confidence 9999985 44
No 154
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.61 E-value=5.1e-07 Score=64.26 Aligned_cols=98 Identities=12% Similarity=0.209 Sum_probs=65.0
Q ss_pred cCCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecC-Cccee------------
Q 036317 8 DGGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQH-LSLVA------------ 66 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d-~~~~~------------ 66 (106)
+-.|+.+|.+++|..+|. .+++.+.||.++++|+.+-+. +..+.+...++|.++ -+|+|
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 446678999999999765 457889999999999876543 111222333333322 11111
Q ss_pred ---------------------eeee-ecccEEEEecCCCcEEEEECCCCC---------------CCcEEEeCCCC
Q 036317 67 ---------------------LSVL-ILRSWVLEGSGDGSVYAWSARSGK---------------EPPVIKWAPGS 105 (106)
Q Consensus 67 ---------------------~~~~-~~~~~i~t~s~d~~i~~wd~~~~~---------------~v~~i~~sp~~ 105 (106)
++|. -.+..|.|+++|..+.+||+...- .|+.|.|+|..
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQ 347 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccC
Confidence 1221 113689999999999999998642 78999998753
No 155
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=3.9e-07 Score=71.56 Aligned_cols=81 Identities=26% Similarity=0.378 Sum_probs=69.9
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCC--Cce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQ--GTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~--~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
.++++++||.+++++++..||.|++|.... +.. .=|+..+...+|++|| .+|++|+..+-.
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-----------~~LlSGG~E~VL 275 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-----------AYLLSGGREGVL 275 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-----------ceEeecccceEE
Confidence 478999999999999999999999997433 221 2266788899999999 999999999999
Q ss_pred EEEECCCCC---------CCcEEEeCCCC
Q 036317 86 YAWSARSGK---------EPPVIKWAPGS 105 (106)
Q Consensus 86 ~~wd~~~~~---------~v~~i~~sp~~ 105 (106)
.+|.+++++ +|..+.++|+.
T Consensus 276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~ds 304 (792)
T KOG1963|consen 276 VLWQLETGKKQFLPRLGSPILHIVVSPDS 304 (792)
T ss_pred EEEeecCCCcccccccCCeeEEEEEcCCC
Confidence 999999987 88889999875
No 156
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.60 E-value=6.1e-07 Score=65.18 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=65.9
Q ss_pred CeeEEEECCCCCeEEEE--eCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC-cEE
Q 036317 14 DANEVKLSNDGRLMLLT--TLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG-SVY 86 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~--~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~-~i~ 86 (106)
.+.++.+++.+.|++-= ...|.|.|||..+-+. ..|.+.+.+++|+++| ..|||+|+-| -|+
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G-----------~llATASeKGTVIR 199 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG-----------TLLATASEKGTVIR 199 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC-----------CEEEEeccCceEEE
Confidence 56666666677788633 3569999999988766 5577788889999999 9999999998 579
Q ss_pred EEECCCCC------------CCcEEEeCCCC
Q 036317 87 AWSARSGK------------EPPVIKWAPGS 105 (106)
Q Consensus 87 ~wd~~~~~------------~v~~i~~sp~~ 105 (106)
++.+.+|+ .|-+++|+|+.
T Consensus 200 Vf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 200 VFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred EEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 99999998 77889999874
No 157
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.59 E-value=2.6e-07 Score=69.68 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=64.8
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
.-|+++.+.|||+.|++++.-.++.|||+..... ....-.+.+++.+||. +...++..||.|.
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDa-----------kvcFsccsdGnI~ 534 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-----------KVCFSCCSDGNIA 534 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-----------ceeeeeccCCcEE
Confidence 4688999999999999999999999999876554 1122234468899999 9999999999999
Q ss_pred EEECCCCC----------CCcEEEeCC
Q 036317 87 AWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 87 ~wd~~~~~----------~v~~i~~sp 103 (106)
|||+.+.. .+.||..++
T Consensus 535 vwDLhnq~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 535 VWDLHNQTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred EEEcccceeeecccCCCCCceeEEecC
Confidence 99999765 566776664
No 158
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.58 E-value=4.7e-07 Score=64.64 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=31.4
Q ss_pred CCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCc
Q 036317 10 GDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGT 45 (106)
Q Consensus 10 ~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~ 45 (106)
.|.+.|++++..+. |+|+++++.|+.+.+||++...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t 77 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNAT 77 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEecccc
Confidence 45679999999985 9999999999999999987654
No 159
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.57 E-value=4.8e-07 Score=69.40 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=62.3
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
+.+|.+.|+++..+ +.++++++.|+.|++||+.+++. .+|.+++.++.+.+. ..+++|+.|+
T Consensus 327 ~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~------------~~~~Sgs~D~ 392 (537)
T KOG0274|consen 327 LRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE------------NRLLSGSLDT 392 (537)
T ss_pred eccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc------------ceEEeeeecc
Confidence 44578899999999 88899999999999999999887 567788888777753 4688999999
Q ss_pred cEEEEECCCC
Q 036317 84 SVYAWSARSG 93 (106)
Q Consensus 84 ~i~~wd~~~~ 93 (106)
+|++||+++.
T Consensus 393 ~IkvWdl~~~ 402 (537)
T KOG0274|consen 393 TIKVWDLRTK 402 (537)
T ss_pred ceEeecCCch
Confidence 9999999998
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.56 E-value=2.5e-07 Score=68.74 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=58.0
Q ss_pred CCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 9 GGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
.-|+.+|++|+++|-. .++++++.|++.+|||...-.. ..|...+.++.|||++ -.|+|.
T Consensus 319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-----------gtl~TT 387 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-----------GTLLTT 387 (498)
T ss_pred hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-----------CceEee
Confidence 3345589999999965 5567889999999999875332 2345567789999999 889999
Q ss_pred cCCCcEEEEECC
Q 036317 80 SGDGSVYAWSAR 91 (106)
Q Consensus 80 s~d~~i~~wd~~ 91 (106)
+.|..|+|||..
T Consensus 388 ~~D~~IRv~dss 399 (498)
T KOG4328|consen 388 CQDNEIRVFDSS 399 (498)
T ss_pred ccCCceEEeecc
Confidence 999999999994
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.56 E-value=2.1e-07 Score=68.74 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=68.2
Q ss_pred cCCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 8 DGGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
..+|+..|-++.|+..-+ .|++++.|++|.+||+.+|+. ..+.+.+..+.|+|.. ..++++|+.|
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~----------p~~LLsGs~D 308 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE----------PSVLLSGSYD 308 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCC----------ceEEEecccc
Confidence 345666777888887644 557889999999999999998 2244567789999886 4789999999
Q ss_pred CcEEEEECCCCC----------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
++|.+.|.+... .|-.+.|+|.
T Consensus 309 ~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 309 GTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH 340 (463)
T ss_pred ceEEeeeccCccccCceEEeccceEEEEecCC
Confidence 999999999422 7777777764
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.55 E-value=6.9e-08 Score=76.12 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=77.6
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
+.+|.+.|.++.|+..|.++.++++|..++||..+++.. +++.+.+...+-+... .+++++|.|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-----------~~iaaaS~D~ 254 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-----------TMIAAASNDK 254 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-----------hhhhhcccCc
Confidence 457888999999999999999999999999999888876 7788888877778788 8999999999
Q ss_pred cEEEEECCCCC----------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
-|++|.+.+|. .|..|+|+|.
T Consensus 255 vIrvWrl~~~~pvsvLrghtgavtaiafsP~ 285 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR 285 (1113)
T ss_pred eEEEEecCCCchHHHHhccccceeeeccCcc
Confidence 99999999998 8899999996
No 163
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.54 E-value=1.1e-06 Score=66.86 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=60.3
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
.+.|.+++++|+.++++.++.||.+.+||...+.. ....-.+..++|+|+| ..++.|++-|.+++||
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~g-----------ai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDG-----------AIFVVGSEQGELQCFD 327 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCC-----------cEEEEEcCCceEEEEE
Confidence 45888999999999999999999999999877654 2222234569999999 9999999999999999
Q ss_pred CCCCC
Q 036317 90 ARSGK 94 (106)
Q Consensus 90 ~~~~~ 94 (106)
+--..
T Consensus 328 ~ALsp 332 (545)
T PF11768_consen 328 MALSP 332 (545)
T ss_pred eecCc
Confidence 87543
No 164
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=4.6e-07 Score=69.01 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=64.6
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
++.||.+=|++++|+.||.+|++++.|-.+.|||....++ .+|..-+-++.|-|.. ..+.|++|..
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t---------nnriv~sgAg 115 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT---------NNRIVLSGAG 115 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---------CCeEEEeccC
Confidence 4578889999999999999999999999999999987666 3455556677887753 1278999999
Q ss_pred CCcEEEEECCC
Q 036317 82 DGSVYAWSARS 92 (106)
Q Consensus 82 d~~i~~wd~~~ 92 (106)
|..|+++|+.+
T Consensus 116 Dk~i~lfdl~~ 126 (758)
T KOG1310|consen 116 DKLIKLFDLDS 126 (758)
T ss_pred cceEEEEeccc
Confidence 99999999986
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.5e-07 Score=75.65 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=66.1
Q ss_pred CCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCceec------cCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 9 GGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTLPV------SHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~~~------~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
..|++.|..++|++.+. .+++++.+|+|.|||+..-+.+. ....+..++|...- .+.+++++.
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv----------qhILAS~s~ 182 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV----------SHILASGSP 182 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhh----------hHHhhccCC
Confidence 35678999999999866 88899999999999997755422 22345567777554 156788899
Q ss_pred CCcEEEEECCCCC------------CCcEEEeCCC
Q 036317 82 DGSVYAWSARSGK------------EPPVIKWAPG 104 (106)
Q Consensus 82 d~~i~~wd~~~~~------------~v~~i~~sp~ 104 (106)
+|.+.|||++..+ .+..+.|+|+
T Consensus 183 sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 183 SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred CCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 9999999999876 3568888886
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.53 E-value=2.2e-07 Score=68.16 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=66.9
Q ss_pred cCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317 8 DGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQHLSLVALSVLILRSW 75 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~ 75 (106)
+.||+++|-+++|+|.. ..+|+++.|-++.||.+-.+-+ .+|...+--+.|+|.. ...
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA----------~NV 146 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA----------PNV 146 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc----------hhh
Confidence 46888899999999964 4567888999999999765433 3455555568899886 467
Q ss_pred EEEecCCCcEEEEECCCCC---------CCcEEEeCC
Q 036317 76 VLEGSGDGSVYAWSARSGK---------EPPVIKWAP 103 (106)
Q Consensus 76 i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp 103 (106)
+++++.|.+|.+|++.+|+ .|.++.|+.
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR 183 (472)
T ss_pred HhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc
Confidence 8899999999999999998 556666654
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.53 E-value=3.3e-07 Score=65.19 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce----eccCC-CcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 13 SDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL----PVSHN-STLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 13 ~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~----~~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
...++=+||| ||. .+.+..++++..||..+.+. ...++ .+..+.|.|+. +.+|+|+++||.|
T Consensus 171 ~~ftsg~WspHHdgn-qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk----------q~~lvt~gDdgyv 239 (370)
T KOG1007|consen 171 HSFTSGAWSPHHDGN-QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK----------QHILVTCGDDGYV 239 (370)
T ss_pred ceecccccCCCCccc-eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCc----------eEEEEEcCCCccE
Confidence 3566778999 455 66777899999999998776 22332 45678999997 3468899999999
Q ss_pred EEEECCCCC-----------CCcEEEeCCCC
Q 036317 86 YAWSARSGK-----------EPPVIKWAPGS 105 (106)
Q Consensus 86 ~~wd~~~~~-----------~v~~i~~sp~~ 105 (106)
++||.+.-+ ++.+++|+|-.
T Consensus 240 riWD~R~tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 240 RIWDTRKTKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred EEEeccCCCccccccCCCceEEEEEEecCcc
Confidence 999999766 88999999864
No 168
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.53 E-value=2.9e-07 Score=66.34 Aligned_cols=87 Identities=11% Similarity=0.139 Sum_probs=72.7
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+.+|.+.|.+.+|=..|+-+++++.|.+..+||+++|++ .++......|+-+|.. +.++++|.|
T Consensus 267 ~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-----------rLVvTsSrD 335 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-----------RLVVTSSRD 335 (481)
T ss_pred eeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc-----------eEEEEeccC
Confidence 4567788899999999999999999999999999999998 4555566778889999 999999999
Q ss_pred CcEEEEECCCCC-----------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
.+.++||.+... .|.++.|+.+
T Consensus 336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred ceeEeccchhhcceeeeecccccceeEEEEecC
Confidence 999999998432 5556666543
No 169
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.53 E-value=2.1e-07 Score=71.45 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=63.8
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
..|.+.|.+++|-|....|++++.|.++++||+.+.++ .+|.+.+.+++|+|++ ...+++|+.|
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n----------~~vF~tGgRD 166 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN----------PAVFCTGGRD 166 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC----------CcceeeccCC
Confidence 45678999999999777888999999999999998776 4577788889999988 3578899999
Q ss_pred CcEEEEECCC
Q 036317 83 GSVYAWSARS 92 (106)
Q Consensus 83 ~~i~~wd~~~ 92 (106)
|.|.|||++-
T Consensus 167 g~illWD~R~ 176 (720)
T KOG0321|consen 167 GEILLWDCRC 176 (720)
T ss_pred CcEEEEEEec
Confidence 9999999984
No 170
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=1.2e-06 Score=63.83 Aligned_cols=87 Identities=14% Similarity=0.262 Sum_probs=67.3
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
++..+| ..|++++|.+||..+++++ .+..|.|||..++.. +..-+.+.-+.||||+ .++.++.
T Consensus 190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg-----------d~lfaAt 257 (445)
T KOG2139|consen 190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG-----------DVLFAAT 257 (445)
T ss_pred eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC-----------CEEEEec
Confidence 333333 5999999999999998887 567899999998876 2344455668999999 9999999
Q ss_pred CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 81 GDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 81 ~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
-|+..++|+..... .|+.-.|+|.
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspc 291 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPC 291 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCC
Confidence 99999999554322 6667777763
No 171
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.52 E-value=3.9e-07 Score=66.55 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=60.0
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
||-+.+..|+++||+++++++-.|..|++-....-.. .+|...+..++.-++ +.+++||.|++
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~------------~~LlS~sGD~t 216 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN------------YLLLSGSGDKT 216 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC------------ceeeecCCCCc
Confidence 5566899999999999999999999999876533222 456666666666654 56899999999
Q ss_pred EEEEECCCCCCCc
Q 036317 85 VYAWSARSGKEPP 97 (106)
Q Consensus 85 i~~wd~~~~~~v~ 97 (106)
+++||+++|+...
T Consensus 217 lr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 217 LRLWDITSGKLLD 229 (390)
T ss_pred EEEEecccCCccc
Confidence 9999999998333
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=7.6e-07 Score=67.46 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=64.9
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------------eccCCCcEEEEEecCCcceeeee
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------------PVSHNSTLEASFSQHLSLVALSV 69 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------------~~~~~~~~~~~fs~d~~~~~~~~ 69 (106)
+|++.+|.++|-++.+++.++++++++.|++|+.|++. ... .++...+..+.+|+..
T Consensus 337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~------- 408 (577)
T KOG0642|consen 337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK------- 408 (577)
T ss_pred eEEEecccCceEEEEecCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccc-------
Confidence 57788999999999999999999999999999999654 211 3455555667788877
Q ss_pred eecccEEEEecCCCcEEEEECCCCC
Q 036317 70 LILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 70 ~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
.+|+++|.||++++|+.....
T Consensus 409 ----~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 409 ----DRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ----cceeeecCCceEEeeccCCcC
Confidence 889999999999999987655
No 173
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=2.6e-06 Score=63.53 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=58.6
Q ss_pred CCeeEEEECCCCCeEEEEe---CCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEe-cCCC--
Q 036317 13 SDANEVKLSNDGRLMLLTT---LEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG-SGDG-- 83 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~---~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~-s~d~-- 83 (106)
..+.+.+|||||+.++..+ .+..++++|+.+++. ....+......||||| +.|+.. +.++
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG-----------~~La~~~~~~g~~ 267 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG-----------SKLAFALSKTGSL 267 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC-----------CEEEEEEcCCCCc
Confidence 4688999999999998664 345789999988865 2122333458999999 766643 3344
Q ss_pred cEEEEECCCCC---------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
.|++||+++++ .+....|+|+
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSPD 297 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRSNNTEPTWFPD 297 (429)
T ss_pred EEEEEECCCCCEEEccCCCCCcCceEECCC
Confidence 59999998876 4567788876
No 174
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=1.1e-06 Score=67.69 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=62.5
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-e-------c-cC-CC--cEEEEEecCCcceeeeeeecccEEEEe
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-P-------V-SH-NS--TLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-~-------~-~~-~~--~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
+++|-+++|+|++.+++.|+.|+.|++||+.++.. . . .+ .. +.++.|=.| ..|++|
T Consensus 154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd------------~tI~sg 221 (691)
T KOG2048|consen 154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD------------STIASG 221 (691)
T ss_pred cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec------------CcEEEe
Confidence 56899999999999999999999999999988765 1 0 11 11 223333344 479999
Q ss_pred cCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317 80 SGDGSVYAWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 80 s~d~~i~~wd~~~~~----------~v~~i~~sp~ 104 (106)
+.-|+|.+||.+.|. .|.+++-+++
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 999999999999987 6677766654
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.48 E-value=1.1e-06 Score=68.51 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=69.3
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce---------------------------------------
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL--------------------------------------- 46 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~--------------------------------------- 46 (106)
.+.+|+.-|++|+|+.||+.+++++.|+.+-+|+.+. |.+
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~ 127 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS 127 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH
Confidence 4678888999999999999999999999999998542 222
Q ss_pred -eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC-------------CCcEEEeCCCC
Q 036317 47 -PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK-------------EPPVIKWAPGS 105 (106)
Q Consensus 47 -~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~-------------~v~~i~~sp~~ 105 (106)
.....++++|+|..|| ++++-|..||+|.+=+-. |+ +|.+++|+|.+
T Consensus 128 K~kss~R~~~CsWtnDG-----------qylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 128 KHKSSSRIICCSWTNDG-----------QYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred hhhhheeEEEeeecCCC-----------cEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCC
Confidence 0113356678999999 999999999999887543 32 89999999975
No 176
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.48 E-value=2.2e-06 Score=64.70 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=61.2
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA 90 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~ 90 (106)
++.+++|+|.| .+++++..|.-.+.|.++... ......+..+.|+|+| .+++.|+.|+.|++|.+
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G-----------~~lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDG-----------AFLAVGSHDNHIYIYRV 476 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCC-----------CEEEEecCCCeEEEEEE
Confidence 56677777777 677777777777777777554 2233445568999999 99999999999999998
Q ss_pred CCCC------------CCcEEEeCCCC
Q 036317 91 RSGK------------EPPVIKWAPGS 105 (106)
Q Consensus 91 ~~~~------------~v~~i~~sp~~ 105 (106)
..+. +|.-++||+++
T Consensus 477 s~~g~~y~r~~k~~gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 477 SANGRKYSRVGKCSGSPITHLDWSSDS 503 (626)
T ss_pred CCCCcEEEEeeeecCceeEEeeecCCC
Confidence 8543 78888998875
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.47 E-value=2.1e-06 Score=61.20 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=61.2
Q ss_pred CCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 12 VSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 12 ~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
..+++++.|+- |-+++.+++-|-+..|||++++.. ..|.+.+..++|+.++ ++.+++.++||
T Consensus 150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s----------~~~FASvgaDG 219 (364)
T KOG0290|consen 150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS----------RDVFASVGADG 219 (364)
T ss_pred CCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc----------cceEEEecCCC
Confidence 34889999974 678888999999999999998732 4567788899999877 56889999999
Q ss_pred cEEEEECCCCC
Q 036317 84 SVYAWSARSGK 94 (106)
Q Consensus 84 ~i~~wd~~~~~ 94 (106)
+++++|++.-+
T Consensus 220 SvRmFDLR~le 230 (364)
T KOG0290|consen 220 SVRMFDLRSLE 230 (364)
T ss_pred cEEEEEecccc
Confidence 99999999765
No 178
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=2.3e-06 Score=63.76 Aligned_cols=82 Identities=22% Similarity=0.215 Sum_probs=58.6
Q ss_pred CCCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCC-
Q 036317 12 VSDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDG- 83 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~- 83 (106)
...+.+.+|+|||++++..+.+ ..+.+||+.+++. ....+......|+||| +.|+ +.+.++
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG-----------~~l~~~~s~~g~ 271 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDG-----------RRLALTLSRDGN 271 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCC-----------CEEEEEEeCCCC
Confidence 3468889999999999877643 4799999988876 1122333468999999 6654 334444
Q ss_pred -cEEEEECCCCC---------CCcEEEeCCC
Q 036317 84 -SVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 84 -~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
.|++||+.+++ .....+|+|+
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spD 302 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGIDTEPTWAPD 302 (433)
T ss_pred ceEEEEECCCCCeEECccCCCCccceEECCC
Confidence 69999999886 2345778875
No 179
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=7.6e-07 Score=66.32 Aligned_cols=70 Identities=26% Similarity=0.467 Sum_probs=62.5
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA 90 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~ 90 (106)
.+..++.||++++++..+..|.|+|....+++. ....+.+.+..|+.|+ +.|+..+.+|.|++||+
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds-----------k~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS-----------KELLASGGTGEVYVWNL 373 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC-----------cEEEEEcCCceEEEEec
Confidence 678999999999999999999999999999988 2245567789999999 99999999999999999
Q ss_pred CCCC
Q 036317 91 RSGK 94 (106)
Q Consensus 91 ~~~~ 94 (106)
+...
T Consensus 374 ~~~~ 377 (514)
T KOG2055|consen 374 RQNS 377 (514)
T ss_pred CCcc
Confidence 9765
No 180
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=7e-07 Score=44.58 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=29.2
Q ss_pred eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 47 PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 47 ~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
..+.+.+.+++|+|++ .+|++++.|++|++||
T Consensus 8 ~~h~~~i~~i~~~~~~-----------~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDG-----------NFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTS-----------SEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEeccc-----------ccceeeCCCCEEEEEC
Confidence 3567788999999999 9999999999999997
No 181
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.44 E-value=1.8e-06 Score=65.24 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=64.5
Q ss_pred CCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 13 SDANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
..|+.+.|||-.++++ +++.+|.+++||...... ..|..+...++|+|.. +..+++.+.|..|+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn----------e~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN----------EALLVSVGYDKKIN 234 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc----------cceEEEecccceEE
Confidence 3678999999998886 567889999999866554 4466666789999987 46788999999999
Q ss_pred EEECCCCC---------CCcEEEeCC
Q 036317 87 AWSARSGK---------EPPVIKWAP 103 (106)
Q Consensus 87 ~wd~~~~~---------~v~~i~~sp 103 (106)
+||..+.+ +...++|+|
T Consensus 235 ~yD~~s~~s~~~l~y~~Plstvaf~~ 260 (673)
T KOG4378|consen 235 IYDIRSQASTDRLTYSHPLSTVAFSE 260 (673)
T ss_pred EeecccccccceeeecCCcceeeecC
Confidence 99999776 555555554
No 182
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=4.2e-06 Score=62.35 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=57.2
Q ss_pred CCCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCCc
Q 036317 12 VSDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDGS 84 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~~ 84 (106)
...+.+.+|||||+.++..+.+ ..+.+||+.+++. ....+......|+||| +.|+ +.+.++.
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG-----------~~la~~~~~~g~ 263 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDG-----------RTLAVALSRDGN 263 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC-----------CEEEEEEccCCC
Confidence 4578899999999999877643 4699999988876 2223344568999999 7765 4566776
Q ss_pred EEEE--ECCCCC---------CCcEEEeCCC
Q 036317 85 VYAW--SARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~w--d~~~~~---------~v~~i~~sp~ 104 (106)
..+| |+.+++ ......|+|+
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpD 294 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPD 294 (427)
T ss_pred ceEEEEECCCCCcEECCCCCCCCcCeEEcCC
Confidence 5555 555443 2345678775
No 183
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=8.4e-07 Score=71.40 Aligned_cols=81 Identities=15% Similarity=0.282 Sum_probs=68.0
Q ss_pred CCeeEEEECCCCCe----EEEEeCCCeEEEEEcCC---Cc-e------eccCCCcEEEEEecCCcceeeeeeeccc-EEE
Q 036317 13 SDANEVKLSNDGRL----MLLTTLEGHIHVLHSFQ---GT-L------PVSHNSTLEASFSQHLSLVALSVLILRS-WVL 77 (106)
Q Consensus 13 ~~v~~v~~spdg~~----l~~~~~~~~i~l~d~~~---~~-~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~ 77 (106)
.+.+.++|.+-|.. ++.+..||.|-+||... +. . ..|++.+..+.|.+.+ . .++
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q-----------~nlLA 133 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ-----------GNLLA 133 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC-----------Cceee
Confidence 47889999988877 78888999999999755 22 1 5588899999999988 5 999
Q ss_pred EecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317 78 EGSGDGSVYAWSARSGK------------EPPVIKWAPG 104 (106)
Q Consensus 78 t~s~d~~i~~wd~~~~~------------~v~~i~~sp~ 104 (106)
+|+.||.|.|||+..-+ .|.+++|+.+
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk 172 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK 172 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh
Confidence 99999999999998755 7899999864
No 184
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=2.2e-06 Score=63.81 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=65.2
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc------------e--------eccCC--CcEEEEEecCCcceeeee
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT------------L--------PVSHN--STLEASFSQHLSLVALSV 69 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~------------~--------~~~~~--~~~~~~fs~d~~~~~~~~ 69 (106)
+..+.+++++|-++.+.+++.+|.|.+.+...-. . .++.+ .+++++++-||
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg------- 289 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG------- 289 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-------
Confidence 3578999999999999999999999988754322 0 23444 67789999999
Q ss_pred eecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317 70 LILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 70 ~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp 103 (106)
..+++|++||.|.+||+.+.+ +|+.+.+.|
T Consensus 290 ----tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 290 ----TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred ----cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 999999999999999999877 566666633
No 185
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.43 E-value=1.7e-06 Score=65.32 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=68.9
Q ss_pred CCCCCCeeEEEECCCCCe-EEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 9 GGDVSDANEVKLSNDGRL-MLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
+.|..+...+.|+|-.+. +++.+.|+.|.+||....+. .....+...++|+++| .+++.|...|.
T Consensus 205 ~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G-----------~~L~aG~s~G~ 273 (673)
T KOG4378|consen 205 EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG-----------TYLCAGNSKGE 273 (673)
T ss_pred hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCc-----------eEEEeecCCce
Confidence 345568899999997654 46789999999999876555 3345566789999999 99999999999
Q ss_pred EEEEECCCCC-----------CCcEEEeCCC
Q 036317 85 VYAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
|..||++.-+ .|.+++|-|.
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred EEEEecccCCCCceEeeecccceeEEEeeec
Confidence 9999999766 7788888553
No 186
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=5.8e-06 Score=61.25 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=57.0
Q ss_pred CCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCC--
Q 036317 13 SDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDG-- 83 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~-- 83 (106)
..+...+|||||++++..+.+ ..+.++|..+++. ....+......|+||| +.|+ +.+.++
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG-----------~~la~~~~~~g~~ 267 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG-----------SKLAFVLSKDGNP 267 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC-----------CEEEEEEccCCCc
Confidence 467888999999999876644 4688999988876 2222333458999999 6665 334444
Q ss_pred cEEEEECCCCC---------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
.|++||+++++ ......|+|+
T Consensus 268 ~Iy~~d~~~~~~~~lt~~~~~~~~~~~spD 297 (430)
T PRK00178 268 EIYVMDLASRQLSRVTNHPAIDTEPFWGKD 297 (430)
T ss_pred eEEEEECCCCCeEEcccCCCCcCCeEECCC
Confidence 68889998876 2345667775
No 187
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=3.3e-06 Score=61.78 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=74.5
Q ss_pred CceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317 2 PFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWV 76 (106)
Q Consensus 2 ~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i 76 (106)
|+..|.+. ..+++++...|+|+.++++...+++..+|..+++. .+-.+++.++..+|.+ +++
T Consensus 239 PV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-----------~~l 305 (412)
T KOG3881|consen 239 PVAQFDFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-----------PVL 305 (412)
T ss_pred ceeEeccc--cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC-----------ceE
Confidence 44455443 45899999999999999999999999999999888 3456778889999999 999
Q ss_pred EEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317 77 LEGSGDGSVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 77 ~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
++++-|+.++|+|+++.+ .+++|-+.+.
T Consensus 306 as~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 306 ASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999999999999955 5566655443
No 188
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.40 E-value=1.3e-06 Score=66.32 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=43.7
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEec
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQ 60 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~ 60 (106)
.+..-+|.|||||+|+++++.|.-+.||....+++ ++|+.++..++|.|
T Consensus 332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 45788999999999999999999999999999888 66777888888885
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.39 E-value=6.9e-06 Score=57.06 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=62.1
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeC-CCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeeccc-EEEEec
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTL-EGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRS-WVLEGS 80 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~-~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~s 80 (106)
.+..+...|..++|+|+++++++++. ++.+++|+..++.. ..+...+..+.|+|++ . .+++++
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~ 218 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG-----------GLLIASGS 218 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc-----------ceEEEEec
Confidence 34566778999999999998888875 99999999987554 3345667789999999 7 566669
Q ss_pred CCCcEEEEECCCCC
Q 036317 81 GDGSVYAWSARSGK 94 (106)
Q Consensus 81 ~d~~i~~wd~~~~~ 94 (106)
.|+.|++||...++
T Consensus 219 ~d~~i~~wd~~~~~ 232 (466)
T COG2319 219 SDGTIRLWDLSTGK 232 (466)
T ss_pred CCCcEEEEECCCCc
Confidence 99999999888665
No 190
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.38 E-value=3.2e-06 Score=62.18 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=52.1
Q ss_pred eEEEECCCCCeEEEEeCCCeEEEEEcCCCce--ecc-CCCcEEEEEecCCcceeeeeeecccEEEEec-CCCcEEEEECC
Q 036317 16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVS-HNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDGSVYAWSAR 91 (106)
Q Consensus 16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~~i~~wd~~ 91 (106)
..+.|+|||+++.+++.|+.+.++|+.+++. ... -.....+++|+|| ++++.++ .++.+.++|.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG-----------~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDG-----------KYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TT-----------TEEEEEEEETTEEEEEETT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCC-----------CEEEEEecCCCceeEeccc
Confidence 4578999999999999999999999999987 111 2234679999999 9888775 57899999999
Q ss_pred CCCCCc
Q 036317 92 SGKEPP 97 (106)
Q Consensus 92 ~~~~v~ 97 (106)
+.+.+.
T Consensus 109 tle~v~ 114 (369)
T PF02239_consen 109 TLEPVK 114 (369)
T ss_dssp T--EEE
T ss_pred ccccee
Confidence 988443
No 191
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=7.2e-06 Score=61.20 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=54.6
Q ss_pred CeeEEEECCCCCeEEEEe-CCC--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC-C--c
Q 036317 14 DANEVKLSNDGRLMLLTT-LEG--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD-G--S 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~-~~~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d-~--~ 84 (106)
.+...+|||||++++... .++ .+++||..+++. ...........|+||| +.|+..+.+ + .
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG-----------~~I~f~s~~~g~~~ 312 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDS-----------QNLAYTSDQAGRPQ 312 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCC-----------CEEEEEeCCCCCce
Confidence 455789999999998653 333 588999988876 2223345678999999 877766543 3 4
Q ss_pred EEEEECCCCC---------CCcEEEeCCC
Q 036317 85 VYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
|+++|+.+++ ......|+|+
T Consensus 313 Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 313 VYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred EEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 5556777665 2345667774
No 192
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.38 E-value=3.8e-06 Score=67.22 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=63.0
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
+.+|.+.|.++.++-||+++++.++|..+++|++++++. -+|.+++..++|.|.. |+|+++|
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~-------------i~t~ged 237 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNR-------------IITVGED 237 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccce-------------eEEeccc
Confidence 568889999999999999999999999999999999887 3577888899998764 8999999
Q ss_pred CcEEEEECC
Q 036317 83 GSVYAWSAR 91 (106)
Q Consensus 83 ~~i~~wd~~ 91 (106)
.++++|+..
T Consensus 238 ctcrvW~~~ 246 (967)
T KOG0974|consen 238 CTCRVWGVN 246 (967)
T ss_pred eEEEEEecc
Confidence 999999544
No 193
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=63.20 Aligned_cols=71 Identities=17% Similarity=0.333 Sum_probs=56.7
Q ss_pred CCCCeEEEEeCCCeEEEEEcCCCceec------cCCC---cEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC-C
Q 036317 22 NDGRLMLLTTLEGHIHVLHSFQGTLPV------SHNS---TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA-R 91 (106)
Q Consensus 22 pdg~~l~~~~~~~~i~l~d~~~~~~~~------~~~~---~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~-~ 91 (106)
|+-.++++++.+.-||+||+.+|+.+. +... ..++.|+||| .+|.+| ...+|+++|+ +
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-----------eqlfaG-ykrcirvFdt~R 188 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-----------EQLFAG-YKRCIRVFDTSR 188 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-----------CeEeec-ccceEEEeeccC
Confidence 778889999999999999999999821 2222 2358999999 998877 5669999999 5
Q ss_pred CCC-----------------CCcEEEeCCC
Q 036317 92 SGK-----------------EPPVIKWAPG 104 (106)
Q Consensus 92 ~~~-----------------~v~~i~~sp~ 104 (106)
.|. .+.|++|+|.
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~ 218 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPM 218 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCC
Confidence 565 6788899985
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=1.3e-06 Score=66.23 Aligned_cols=75 Identities=9% Similarity=0.190 Sum_probs=64.4
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------------eccCCCcEEEEEecCCcceeeeeeecc
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------------PVSHNSTLEASFSQHLSLVALSVLILR 73 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------------~~~~~~~~~~~fs~d~~~~~~~~~~~~ 73 (106)
|++..|..-|+.++|.|-.-.+++++.++.+++|+++.... ..|.+++.+++.++.+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~----------- 356 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG----------- 356 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-----------
Confidence 45566677899999999999899999999999999944322 4678899999999999
Q ss_pred cEEEEecCCCcEEEEECC
Q 036317 74 SWVLEGSGDGSVYAWSAR 91 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~ 91 (106)
+++.+|+.||+|+.|++-
T Consensus 357 ~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred eEEEeeccCceeeeeccC
Confidence 999999999999999665
No 195
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.34 E-value=1e-05 Score=59.31 Aligned_cols=70 Identities=19% Similarity=0.111 Sum_probs=51.5
Q ss_pred CeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCC--Cc
Q 036317 14 DANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGD--GS 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d--~~ 84 (106)
.+...+|||||++++.+..+ .++++||+.+++. ....+....+.|+||| +.|+ +.+.+ ..
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg-----------~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG-----------SKLAVSLSKDGNPD 259 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC-----------CEEEEEECCCCCcc
Confidence 57788999999999877644 4899999988865 2233344568999999 6554 33443 36
Q ss_pred EEEEECCCCC
Q 036317 85 VYAWSARSGK 94 (106)
Q Consensus 85 i~~wd~~~~~ 94 (106)
|++||+.+++
T Consensus 260 i~~~d~~~~~ 269 (417)
T TIGR02800 260 IYVMDLDGKQ 269 (417)
T ss_pred EEEEECCCCC
Confidence 9999998776
No 196
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.33 E-value=7.2e-06 Score=62.01 Aligned_cols=82 Identities=22% Similarity=0.384 Sum_probs=65.0
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
+..+++.|+|+|||.++|++++|+.|+||-+.. |+. ..+-.+++.+.||+|+ +|+.+-+.|-.
T Consensus 446 d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds-----------~~~~~~S~d~e 514 (626)
T KOG2106|consen 446 DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS-----------QFLVSNSGDYE 514 (626)
T ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC-----------ceEEeccCceE
Confidence 345899999999999999999999999998654 444 2222567789999999 99999999999
Q ss_pred EEEEECCCCC---CCcEEEeCC
Q 036317 85 VYAWSARSGK---EPPVIKWAP 103 (106)
Q Consensus 85 i~~wd~~~~~---~v~~i~~sp 103 (106)
|-.|.....+ .++.++|..
T Consensus 515 iLyW~~~~~~~~ts~kDvkW~t 536 (626)
T KOG2106|consen 515 ILYWKPSECKQITSVKDVKWAT 536 (626)
T ss_pred EEEEccccCcccceecceeeee
Confidence 9999554444 566666643
No 197
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=8.4e-06 Score=58.15 Aligned_cols=86 Identities=9% Similarity=0.076 Sum_probs=65.6
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
..+..|...|.++.+++-...+++++.|++|++||...... ....+.+ -+.+-.+ ..|+.|..|
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkV--y~~~v~g-----------~~LvVg~~~ 154 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKV--YCMDVSG-----------NRLVVGTSD 154 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceE--EEEeccC-----------CEEEEeecC
Confidence 45556667999999999888899999999999999876433 1122233 2334556 778888899
Q ss_pred CcEEEEECCCCC------------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK------------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~------------~v~~i~~sp~ 104 (106)
..+.+||+++.. .++|++.-|+
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn 188 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN 188 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecC
Confidence 999999999875 7788888774
No 198
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=7.4e-06 Score=62.97 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=54.2
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--e-ccCCCcEEEEEecCCcceeeee
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--P-VSHNSTLEASFSQHLSLVALSV 69 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~-~~~~~~~~~~fs~d~~~~~~~~ 69 (106)
.+-..||.+.|+++..+|.|.++++|+.||+++||.+.+|+. . .-.+.+.+++|+|.++.++++.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEE
Confidence 344578999999999999999999999999999999999988 2 2334567899999988777654
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=6.3e-06 Score=59.61 Aligned_cols=85 Identities=14% Similarity=0.262 Sum_probs=60.1
Q ss_pred CCCCCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce------eccC-CCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 10 GDVSDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL------PVSH-NSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 10 ~~~~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~------~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
++...++.+.|.. .+..+.+++.||+|++||+++... .++. .+.........+ +.+++|.
T Consensus 68 ~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-----------~ii~~Gt 136 (376)
T KOG1188|consen 68 GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-----------NIIACGT 136 (376)
T ss_pred CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-----------CeEEecc
Confidence 3455677888866 455678899999999999987544 1222 233334444466 6777774
Q ss_pred C----CCcEEEEECCCCC------------CCcEEEeCCCC
Q 036317 81 G----DGSVYAWSARSGK------------EPPVIKWAPGS 105 (106)
Q Consensus 81 ~----d~~i~~wd~~~~~------------~v~~i~~sp~~ 105 (106)
+ +-.+.+||++..+ .|.+++|+|+-
T Consensus 137 E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 137 ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred ccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 4 6799999999765 89999999973
No 200
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=1.1e-05 Score=60.59 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=55.9
Q ss_pred CeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEE-ecCCC--c
Q 036317 14 DANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLE-GSGDG--S 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t-~s~d~--~ 84 (106)
.+.+..|||||++++..+.+ ..++++|+.+++. ....+......|+||| +.|+. .+.++ .
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG-----------~~La~~~~~~g~~~ 287 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG-----------KKLALVLSKDGQPE 287 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC-----------CEEEEEEeCCCCeE
Confidence 56789999999999876543 3688999988875 1122223358999999 76553 45555 5
Q ss_pred EEEEECCCCC---------CCcEEEeCCC
Q 036317 85 VYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
|+++|+++++ ......|+|+
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpD 316 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHPD 316 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCC
Confidence 8888998876 3455677775
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=5.7e-06 Score=63.33 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=67.6
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----------e---c--cCCCcEEEEEecCCcceeeeeeecccEE
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----------P---V--SHNSTLEASFSQHLSLVALSVLILRSWV 76 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----------~---~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i 76 (106)
.+.++.+..++-...+++++.+|.+.+||..+... . . ....++++.|+-|| -.+
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-----------L~~ 243 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-----------LHV 243 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-----------eeE
Confidence 46899999999988899999999999999876543 1 1 12347889999999 999
Q ss_pred EEecCCCcEEEEECCCCC-----------CCcEEEeCC
Q 036317 77 LEGSGDGSVYAWSARSGK-----------EPPVIKWAP 103 (106)
Q Consensus 77 ~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp 103 (106)
+.|..+|.++++|+++.+ +|..+.|.+
T Consensus 244 aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 244 AVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred EeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 999999999999999877 777888754
No 202
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=1e-05 Score=60.31 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=55.5
Q ss_pred CCCeeEEEECCCCCeEEEE-eCCC--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-C--
Q 036317 12 VSDANEVKLSNDGRLMLLT-TLEG--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-D-- 82 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~-~~~~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d-- 82 (106)
.+.+...+|||||+.++.+ ..++ .|+++|..+++. ..+........|+||| ++|+..+. +
T Consensus 245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG-----------~~i~f~s~~~g~ 313 (435)
T PRK05137 245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDG-----------SQIVFESDRSGS 313 (435)
T ss_pred CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCC-----------CEEEEEECCCCC
Confidence 3456788999999988654 4444 577789888776 2222334568999999 77766553 3
Q ss_pred CcEEEEECCCCC---------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
..|+++|+.+++ ......|+|+
T Consensus 314 ~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd 344 (435)
T PRK05137 314 PQLYVMNADGSNPRRISFGGGRYSTPVWSPR 344 (435)
T ss_pred CeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence 368888987764 2344667775
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.30 E-value=2.5e-06 Score=63.82 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=58.0
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-ec-c-CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-PV-S-HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-~~-~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
-|.++|++++++++|+|+++++.|..++|||+..-.. .. + ......++||..| ++..+....|.
T Consensus 291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-------------lLA~~~G~~v~ 357 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-------------LLALSYGDHVQ 357 (545)
T ss_pred hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-------------ceeeecCCeee
Confidence 4678999999999999999999999999999976554 11 1 1233457888777 34444555788
Q ss_pred EEE-CCCCC--------------CCcEEEeCCC
Q 036317 87 AWS-ARSGK--------------EPPVIKWAPG 104 (106)
Q Consensus 87 ~wd-~~~~~--------------~v~~i~~sp~ 104 (106)
+|. .-.+. +|..+.|.|-
T Consensus 358 iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 358 IWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred eehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence 883 22211 7777777763
No 204
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.30 E-value=5.9e-06 Score=63.85 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=66.9
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
+.++.||+..|+.+-.++||+.+++++.|++|++||+...+. ..|...+.+..-+|+= .++.+|+
T Consensus 206 imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf-----------~~vYsG~ 274 (735)
T KOG0308|consen 206 IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF-----------THVYSGG 274 (735)
T ss_pred eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc-----------ceEEecC
Confidence 456789999999999999999999999999999999866554 4455566666667777 9999999
Q ss_pred CCCcEEEEECCCCC
Q 036317 81 GDGSVYAWSARSGK 94 (106)
Q Consensus 81 ~d~~i~~wd~~~~~ 94 (106)
.||.|+.=|+.+.+
T Consensus 275 rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 275 RDGNIYRTDLRNPA 288 (735)
T ss_pred CCCcEEecccCCch
Confidence 99999999998843
No 205
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.29 E-value=4.3e-06 Score=65.59 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=65.1
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
|.+..-.+..+|.|.|+++++.|+++.++|..+|+. .+|...++.+.|.+|= +.|++.+.||.|.
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-----------kHlISvsgDgCIF 708 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-----------KHLISVSGDGCIF 708 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc-----------hhheeecCCceEE
Confidence 346788899999999999999999999999999987 5677778899999999 9999999999999
Q ss_pred EEECCCCC
Q 036317 87 AWSARSGK 94 (106)
Q Consensus 87 ~wd~~~~~ 94 (106)
+|.+...+
T Consensus 709 vW~lp~~m 716 (1080)
T KOG1408|consen 709 VWKLPLTM 716 (1080)
T ss_pred EEECchhH
Confidence 99987543
No 206
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.27 E-value=5.1e-06 Score=64.44 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
.+|.+-|+.+++=|++. ++++++|+.|++|+.....+ .++.+.+.+++..+++ ..|+++++|+++
T Consensus 176 ~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~-----------~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 176 SGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSD-----------GLIVSTGEDRTL 243 (745)
T ss_pred ccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCC-----------CeEEEecCCceE
Confidence 45556677777777765 66777777777777733333 3445555566655666 899999999999
Q ss_pred EEEECCCC
Q 036317 86 YAWSARSG 93 (106)
Q Consensus 86 ~~wd~~~~ 93 (106)
++|+....
T Consensus 244 riW~~~e~ 251 (745)
T KOG0301|consen 244 RIWKKDEC 251 (745)
T ss_pred EEeecCce
Confidence 99998743
No 207
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=2.2e-05 Score=58.77 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=58.7
Q ss_pred CeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEecC---CCc
Q 036317 14 DANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG---DGS 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~---d~~ 84 (106)
.+....|||||++++....+ ..+.+||..+++.. ..........|+||| ++|+.... ...
T Consensus 328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG-----------~~L~f~~~~~g~~~ 396 (428)
T PRK01029 328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDS-----------LHLVYSAGNSNESE 396 (428)
T ss_pred CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCC-----------CEEEEEECCCCCce
Confidence 56788999999999877654 47899999988772 122234568999999 76654322 357
Q ss_pred EEEEECCCCC---------CCcEEEeCCCC
Q 036317 85 VYAWSARSGK---------EPPVIKWAPGS 105 (106)
Q Consensus 85 i~~wd~~~~~---------~v~~i~~sp~~ 105 (106)
++++|+.+++ .+...+|+|.+
T Consensus 397 L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 9999998876 45677888865
No 208
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=2.3e-05 Score=58.42 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=52.3
Q ss_pred CeeEEEECCCCCeEEEEeCC-CeEEEE--EcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC---c
Q 036317 14 DANEVKLSNDGRLMLLTTLE-GHIHVL--HSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG---S 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~-~~i~l~--d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~---~ 84 (106)
......|+|||++++.++.. +...+| +..+++. ...........||||| ++|+..+.++ .
T Consensus 285 ~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG-----------~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDG-----------KLLAYISRVGGAFK 353 (427)
T ss_pred CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCC-----------CEEEEEEccCCcEE
Confidence 35678899999998876643 444444 5555554 1122223457899999 7777655443 6
Q ss_pred EEEEECCCCC--------CCcEEEeCCC
Q 036317 85 VYAWSARSGK--------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~--------~v~~i~~sp~ 104 (106)
|++||+.+++ ......|+|+
T Consensus 354 I~v~d~~~g~~~~lt~~~~~~~p~~spd 381 (427)
T PRK02889 354 LYVQDLATGQVTALTDTTRDESPSFAPN 381 (427)
T ss_pred EEEEECCCCCeEEccCCCCccCceECCC
Confidence 9999998876 2345567775
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.22 E-value=9.3e-06 Score=58.39 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
..|+..|+.++|+|..+.++++++|..-++|...+ ++- .......+.+.|+|.+ ..++.||.
T Consensus 52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-----------nkFAVgSg 120 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-----------NKFAVGSG 120 (361)
T ss_pred hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-----------ceEEeccC
Confidence 44556899999999999999999999999999844 432 3344456779999999 99999999
Q ss_pred CCcEEEEECCCCC--------------CCcEEEeCCCC
Q 036317 82 DGSVYAWSARSGK--------------EPPVIKWAPGS 105 (106)
Q Consensus 82 d~~i~~wd~~~~~--------------~v~~i~~sp~~ 105 (106)
...|.+|=++..+ .|.+++|+|+-
T Consensus 121 ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 121 ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 9999999877554 67899999974
No 210
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.21 E-value=3.1e-05 Score=55.39 Aligned_cols=80 Identities=5% Similarity=0.069 Sum_probs=56.9
Q ss_pred CeeEEEECCCCCeEEEEeC-CCeEEEEEcCC--Cce------e---c---cCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTL-EGHIHVLHSFQ--GTL------P---V---SHNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~-~~~i~l~d~~~--~~~------~---~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
..+.+.|+|||++++++.. ++++.+||... ++. . . .......+.|+||+ +++++
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-----------~~lyv 244 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-----------RHLYA 244 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-----------CEEEE
Confidence 4578999999999988775 89999999863 333 0 1 01122358899999 98888
Q ss_pred ecC-CCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317 79 GSG-DGSVYAWSARSGK-------------EPPVIKWAPG 104 (106)
Q Consensus 79 ~s~-d~~i~~wd~~~~~-------------~v~~i~~sp~ 104 (106)
+.+ +++|.+|+++... .++.+.++|+
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d 284 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS 284 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence 865 6799999985422 3456677664
No 211
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=3.3e-05 Score=55.44 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=57.8
Q ss_pred CCCCCeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce-------------eccCCCcEEEEEecC--Ccceeeeeeec
Q 036317 10 GDVSDANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL-------------PVSHNSTLEASFSQH--LSLVALSVLIL 72 (106)
Q Consensus 10 ~~~~~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~-------------~~~~~~~~~~~fs~d--~~~~~~~~~~~ 72 (106)
.|.+.|..+.|.+- |+.+++.+.|+++.||.-..... ......++++.|.|. |
T Consensus 57 ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG---------- 126 (361)
T KOG2445|consen 57 AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG---------- 126 (361)
T ss_pred ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc----------
Confidence 44678999999643 99999999999999998632211 234567888999977 5
Q ss_pred ccEEEEecCCCcEEEEECCCCC
Q 036317 73 RSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 73 ~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
-.+++++.||.++||+.-+..
T Consensus 127 -LklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 127 -LKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred -eEEEEeccCcEEEEEecCCcc
Confidence 689999999999999887643
No 212
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.17 E-value=6.5e-05 Score=53.71 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=58.0
Q ss_pred CCeeEEEECCCCCeEEEEe-CCCeEEEEEcC-CCce---e--ccCCCcEEEEEecCCcceeeeeeecccEEEEecC-CCc
Q 036317 13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSF-QGTL---P--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DGS 84 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~-~~~~---~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~~ 84 (106)
+....++++|||+++++++ .++.+.+|+.. ++++ . ...+.+..++|+|++ +++++++. ++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g-----------~~l~v~~~~~~~ 103 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQG-----------RFLFSASYNANC 103 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCC-----------CEEEEEEcCCCe
Confidence 3567889999999987765 57889999886 4544 1 122345679999999 88877764 789
Q ss_pred EEEEECCC-CC------------CCcEEEeCCC
Q 036317 85 VYAWSARS-GK------------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~-~~------------~v~~i~~sp~ 104 (106)
|.+|++++ +. .+.++.++|+
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD 136 (330)
T ss_pred EEEEEECCCCCCCCceeeccCCCcccEeEeCCC
Confidence 99999963 32 3456667765
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=1.3e-05 Score=59.65 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=55.7
Q ss_pred eEEEECCCCCeEEEEeCCCeEEEEEcCCCcee--ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC--
Q 036317 16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR-- 91 (106)
Q Consensus 16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~-- 91 (106)
....|+|||++++.++.++ +.+||..+++.. ........++|+||| ++|+.++.++.+.+|++.
T Consensus 336 ~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG-----------~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNG-----------IMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCC-----------CEEEEEEcCCCceEEEEEEC
Confidence 3577999999998887755 566899888751 111122457899999 999999888888888753
Q ss_pred CCC----------CCcEEEeCCC
Q 036317 92 SGK----------EPPVIKWAPG 104 (106)
Q Consensus 92 ~~~----------~v~~i~~sp~ 104 (106)
+|+ .+...+|+|.
T Consensus 404 ~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 404 DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceEEccCCCCCCCCcccCCC
Confidence 344 4566778875
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=3.9e-05 Score=57.18 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=53.6
Q ss_pred CeeEEEECCCCCeEEEEeCC-C--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC---Cc
Q 036317 14 DANEVKLSNDGRLMLLTTLE-G--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD---GS 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~-~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d---~~ 84 (106)
.....+|+|||++++.++.. + .++++|..+++. ...........||||| ++|+..+.+ ..
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG-----------~~Ia~~~~~~~~~~ 361 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDG-----------KKIAMVHGSGGQYR 361 (433)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCC-----------CEEEEEECCCCcee
Confidence 34578999999999877643 3 477778777665 1122233458999999 777655433 26
Q ss_pred EEEEECCCCC--------CCcEEEeCCC
Q 036317 85 VYAWSARSGK--------EPPVIKWAPG 104 (106)
Q Consensus 85 i~~wd~~~~~--------~v~~i~~sp~ 104 (106)
|++||+.+++ ......|+|+
T Consensus 362 I~v~d~~~g~~~~Lt~~~~~~~p~~spd 389 (433)
T PRK04922 362 IAVMDLSTGSVRTLTPGSLDESPSFAPN 389 (433)
T ss_pred EEEEECCCCCeEECCCCCCCCCceECCC
Confidence 9999998876 2234566665
No 215
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.12 E-value=2.7e-05 Score=60.17 Aligned_cols=80 Identities=18% Similarity=0.335 Sum_probs=64.7
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------ecc--CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVS--HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~--~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
.+.++..+..|.++.+.+.|+.|++||..+-.. .+. ......-..+||+ .++++|+.|..+
T Consensus 273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-----------~~l~SgSsd~~a 341 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-----------CSLLSGSSDEQA 341 (720)
T ss_pred eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-----------ceEeccCCCcce
Confidence 677888889999999999999999999876554 111 1112345789999 999999999999
Q ss_pred EEEECCCCC-----------CCcEEEeCCC
Q 036317 86 YAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 86 ~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
++|.+.+.+ .|.+++|.|.
T Consensus 342 yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 342 YIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred eeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999877 7888888774
No 216
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.12 E-value=9.7e-06 Score=60.47 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=68.1
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
...+.+++|+.+..-++.+.+=|.+.+||..++.- ..+...+..+++.|.. +.+++|+|-|++++
T Consensus 279 ~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~----------p~~laT~s~D~T~k 348 (498)
T KOG4328|consen 279 NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC----------PWFLATASLDQTAK 348 (498)
T ss_pred ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC----------chheeecccCccee
Confidence 34678889988888788888778999999887654 3455678889999987 57899999999999
Q ss_pred EEECCCCC--------------CCcEEEeCCCC
Q 036317 87 AWSARSGK--------------EPPVIKWAPGS 105 (106)
Q Consensus 87 ~wd~~~~~--------------~v~~i~~sp~~ 105 (106)
|||++.-. .|.+.-|||.-
T Consensus 349 IWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 349 IWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred eeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 99998643 67888888863
No 217
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.11 E-value=3.5e-06 Score=61.92 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=59.8
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
.+|..+|..++|+||++++++++.|+.+.+||+..|.+ ..+...+..++|.|-+ ++|++-+.|..
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~-----------qyv~s~s~dr~ 188 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN-----------QYVASKSSDRH 188 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh-----------hhhhhhccCcc
Confidence 56778999999999999999999999999999999988 3455677789999999 66666666665
Q ss_pred EEEEECCCCC
Q 036317 85 VYAWSARSGK 94 (106)
Q Consensus 85 i~~wd~~~~~ 94 (106)
.+...+..-+
T Consensus 189 ~~~~~~~~~~ 198 (434)
T KOG1009|consen 189 PEGFSAKLKQ 198 (434)
T ss_pred cceeeeeeee
Confidence 5555554433
No 218
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=2.8e-05 Score=59.14 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=53.7
Q ss_pred CCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCcee--ccCCCcEEEEEecCCcceeeeeeecccEEEEecC------
Q 036317 13 SDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTLP--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG------ 81 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~------ 81 (106)
++=+.+-|+|.|++++.++.+ |.|.+||+.+.+.. ......+-+.|+||| ++++|+.-
T Consensus 312 gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdG-----------e~flTATTaPRlrv 380 (566)
T KOG2315|consen 312 GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDG-----------EYFLTATTAPRLRV 380 (566)
T ss_pred CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCC-----------cEEEEEeccccEEe
Confidence 466789999999999999866 88999999987662 222233459999999 88887743
Q ss_pred CCcEEEEECC
Q 036317 82 DGSVYAWSAR 91 (106)
Q Consensus 82 d~~i~~wd~~ 91 (106)
|..++||+..
T Consensus 381 dNg~Kiwhyt 390 (566)
T KOG2315|consen 381 DNGIKIWHYT 390 (566)
T ss_pred cCCeEEEEec
Confidence 7889999985
No 219
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.09 E-value=1.4e-05 Score=57.05 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=57.0
Q ss_pred CCCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 12 VSDANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
...|+++.|+|+.++++ +++.|+.+++||...-+. +.|...+.++.|.|-. ++.|++|+.|..|
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h----------dqLiLs~~SDs~V 283 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH----------DQLILSGGSDSAV 283 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc----------ceEEEecCCCcee
Confidence 34799999999988765 567889999999876554 4566678899999875 3678999999999
Q ss_pred EEEECCC
Q 036317 86 YAWSARS 92 (106)
Q Consensus 86 ~~wd~~~ 92 (106)
.+|-+.+
T Consensus 284 ~Lsca~s 290 (370)
T KOG1007|consen 284 NLSCASS 290 (370)
T ss_pred EEEeccc
Confidence 9996653
No 220
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=2.5e-05 Score=61.75 Aligned_cols=73 Identities=18% Similarity=0.138 Sum_probs=63.1
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
|..+|+++.|++||.++++|+.++-+-+|...+++. |.-.+++..+.+|||+ ...+...+|.+|.+
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds-----------~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS-----------DLYSLVLEDNQIHL 318 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCC-----------CeEEEEecCceEEE
Confidence 356999999999999999999999999999998775 5566677899999999 88888888999999
Q ss_pred EECCCCC
Q 036317 88 WSARSGK 94 (106)
Q Consensus 88 wd~~~~~ 94 (106)
-.+.+.+
T Consensus 319 i~~~dl~ 325 (792)
T KOG1963|consen 319 IKASDLE 325 (792)
T ss_pred Eeccchh
Confidence 8876544
No 221
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=4.8e-05 Score=57.99 Aligned_cols=82 Identities=6% Similarity=0.009 Sum_probs=69.1
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
..|.+.|+.+.++.+-.++.+++.|..+..|+..+.+. ......+.+.+.+||+ +.+++++ ++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~-----------~~l~~as--~~ 165 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG-----------KILLTAS--RQ 165 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC-----------CEEEecc--ce
Confidence 45667999999999999999999999999999988877 3344455678999999 9998886 67
Q ss_pred EEEEECCCCC----------CCcEEEeCC
Q 036317 85 VYAWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 85 i~~wd~~~~~----------~v~~i~~sp 103 (106)
|++||+++++ +|+++.|..
T Consensus 166 ik~~~~~~kevv~~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 166 IKVLDIETKEVVITFTGHGSPVRTLSFTT 194 (541)
T ss_pred EEEEEccCceEEEEecCCCcceEEEEEEE
Confidence 9999999998 888888743
No 222
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.01 E-value=0.00013 Score=54.02 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=48.2
Q ss_pred CeeEEEECCCCCeEEEEe-CCC--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-C--Cc
Q 036317 14 DANEVKLSNDGRLMLLTT-LEG--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-D--GS 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~-~~~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d--~~ 84 (106)
.+....|||||++++... .++ .++++|..+++. ...........|+||| +.|+..+. + ..
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg-----------~~i~f~s~~~g~~~ 312 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDG-----------RTLYFTSDRGGKPQ 312 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCC-----------CEEEEEECCCCCce
Confidence 455789999999887543 333 688889988876 2222234468999999 76655443 3 36
Q ss_pred EEEEECCCCC
Q 036317 85 VYAWSARSGK 94 (106)
Q Consensus 85 i~~wd~~~~~ 94 (106)
|+++|+.+++
T Consensus 313 iy~~d~~~g~ 322 (430)
T PRK00178 313 IYKVNVNGGR 322 (430)
T ss_pred EEEEECCCCC
Confidence 8888887776
No 223
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.01 E-value=0.00014 Score=50.50 Aligned_cols=83 Identities=27% Similarity=0.434 Sum_probs=61.6
Q ss_pred CCCCCCeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce-e----ccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 9 GGDVSDANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL-P----VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~-~----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.++...|..++|+|++..+ +.++.++.+++||...+.. . .+.... -..|+|++ .++++++.|
T Consensus 195 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~d 262 (466)
T COG2319 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-----------SLLASGSSD 262 (466)
T ss_pred ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-----------CEEEEecCC
Confidence 3466799999999999844 4448999999998776655 2 122222 22799999 899999999
Q ss_pred CcEEEEECCCCC-----------CCcEEEeCC
Q 036317 83 GSVYAWSARSGK-----------EPPVIKWAP 103 (106)
Q Consensus 83 ~~i~~wd~~~~~-----------~v~~i~~sp 103 (106)
+.+++|++.... .+.++.|+|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred CcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 999999998544 555566666
No 224
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.1e-05 Score=62.16 Aligned_cols=48 Identities=27% Similarity=0.497 Sum_probs=42.5
Q ss_pred eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317 47 PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPGS 105 (106)
Q Consensus 47 ~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~~ 105 (106)
.+|.+.+.+++-.|.| .+|++|+.||+++||.+.+|. .|+||+|+|..
T Consensus 397 rGHtg~Vr~iSvdp~G-----------~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSG-----------EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLS 453 (733)
T ss_pred eccCCeEEEEEecCCc-----------ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCC
Confidence 3566777778888999 999999999999999999998 89999999964
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.99 E-value=0.00014 Score=53.29 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=50.4
Q ss_pred eeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC---cE
Q 036317 15 ANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG---SV 85 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~---~i 85 (106)
.....|+|||++++..+.. ..++++|..+++. ...........|+||| ++|+..+.++ .|
T Consensus 280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg-----------~~i~~~~~~~~~~~i 348 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG-----------DLIAFVHREGGGFNI 348 (417)
T ss_pred CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCC-----------CEEEEEEccCCceEE
Confidence 4467899999998877643 2688888877765 2223344568999999 8877776665 78
Q ss_pred EEEECCCCC
Q 036317 86 YAWSARSGK 94 (106)
Q Consensus 86 ~~wd~~~~~ 94 (106)
.+||+.++.
T Consensus 349 ~~~d~~~~~ 357 (417)
T TIGR02800 349 AVMDLDGGG 357 (417)
T ss_pred EEEeCCCCC
Confidence 999988765
No 226
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.98 E-value=1.7e-05 Score=60.54 Aligned_cols=69 Identities=22% Similarity=0.392 Sum_probs=55.8
Q ss_pred CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC------
Q 036317 25 RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK------ 94 (106)
Q Consensus 25 ~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~------ 94 (106)
+.++.++.||.+++.+ ..+++ ..|.+.+.+..|+||| .=++|+++||.|++|.- +|+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-----------tgLlt~GEDG~iKiWSr-sGMLRStl~ 142 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-----------AGLLTAGEDGVIKIWSR-SGMLRSTVV 142 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-----------ceeeeecCCceEEEEec-cchHHHHHh
Confidence 5678888999998876 35555 3355666778999999 99999999999999975 454
Q ss_pred ----CCcEEEeCCCCC
Q 036317 95 ----EPPVIKWAPGSL 106 (106)
Q Consensus 95 ----~v~~i~~sp~~~ 106 (106)
+|.|++|.|++.
T Consensus 143 Q~~~~v~c~~W~p~S~ 158 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSN 158 (737)
T ss_pred hcCceeEEEEECCCCC
Confidence 999999999863
No 227
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00013 Score=54.81 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=47.8
Q ss_pred CeeEEEECCCCCeEEEE-eCCC--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-C--Cc
Q 036317 14 DANEVKLSNDGRLMLLT-TLEG--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-D--GS 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~-~~~~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d--~~ 84 (106)
.....+|||||+.++.+ ..++ .|+++|..+++. ..........+|+||| ++|+..+. + ..
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG-----------~~I~f~s~~~g~~~ 331 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDG-----------KSLIFTSERGGKPQ 331 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCC-----------CEEEEEECCCCCce
Confidence 34578999999988764 4455 478889888876 2222334568999999 76655443 3 35
Q ss_pred EEEEECCCCC
Q 036317 85 VYAWSARSGK 94 (106)
Q Consensus 85 i~~wd~~~~~ 94 (106)
|+++|+++++
T Consensus 332 Iy~~dl~~g~ 341 (448)
T PRK04792 332 IYRVNLASGK 341 (448)
T ss_pred EEEEECCCCC
Confidence 7777887776
No 228
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.9e-05 Score=57.38 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=62.7
Q ss_pred CCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 10 GDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
++...|++++|||..+ .+..++-++.|+|.|+++... -.....+.+|+|.-|. +.+|.+|..+|.|
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde----------~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE----------RHVIYAGLQNGMV 260 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC----------cceeEEeccCceE
Confidence 4445899999999988 577888999999999999877 2234677899999887 4789999999999
Q ss_pred EEEECCCCC
Q 036317 86 YAWSARSGK 94 (106)
Q Consensus 86 ~~wd~~~~~ 94 (106)
+++|++..+
T Consensus 261 lvyD~R~~~ 269 (463)
T KOG1645|consen 261 LVYDMRQPE 269 (463)
T ss_pred EEEEccCCC
Confidence 999999765
No 229
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=1.7e-05 Score=58.74 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=65.8
Q ss_pred CceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------ec-cC-CCcEEEEEecCCcceeeeee
Q 036317 2 PFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------PV-SH-NSTLEASFSQHLSLVALSVL 70 (106)
Q Consensus 2 ~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------~~-~~-~~~~~~~fs~d~~~~~~~~~ 70 (106)
||+.=.+.+|.+-|++++||.++++|++++.|..+++|+....-. .. ++ .-+-++.|...+
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-------- 117 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-------- 117 (609)
T ss_pred chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--------
Confidence 344445667888999999999999999999999999999753321 11 22 345678898888
Q ss_pred ecccEEEEecCCCcEEEEECCCCC
Q 036317 71 ILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 71 ~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
+++.+|..+++|.+-|+++.+
T Consensus 118 ---~~~~SG~~~~~VI~HDiEt~q 138 (609)
T KOG4227|consen 118 ---RFLYSGERWGTVIKHDIETKQ 138 (609)
T ss_pred ---eeEecCCCcceeEeeecccce
Confidence 999999999999999999877
No 230
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.94 E-value=0.00015 Score=51.55 Aligned_cols=79 Identities=14% Similarity=0.015 Sum_probs=62.5
Q ss_pred eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--ec-----cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PV-----SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~-----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
++++++|+|++++++.+....|.+|.+...-. .. -...--..+|+... ..+|++..||++.|
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-----------~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-----------LQFAVVFQDGTCAI 229 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-----------ceEEEEecCCcEEE
Confidence 78999999999999999999999998764322 11 11122347899888 89999999999999
Q ss_pred EECCCCC---------------CCcEEEeCCC
Q 036317 88 WSARSGK---------------EPPVIKWAPG 104 (106)
Q Consensus 88 wd~~~~~---------------~v~~i~~sp~ 104 (106)
||++... .++...|+|.
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~ 261 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLY 261 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecCC
Confidence 9999754 7888888874
No 231
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.93 E-value=0.00013 Score=56.38 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=54.2
Q ss_pred CCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----------eccCCCcEEEEEecCCcceeeeeeecccE--EEE
Q 036317 12 VSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----------PVSHNSTLEASFSQHLSLVALSVLILRSW--VLE 78 (106)
Q Consensus 12 ~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~--i~t 78 (106)
..+|.+++|+|. ...++.|+.+|+|.+||...+.. ..+..++..+.|-++. .- +++
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~-----------~~~~f~s 310 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE-----------HNTEFFS 310 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC-----------CCCceEE
Confidence 358999999994 66777888999999999876543 1244566677777654 44 788
Q ss_pred ecCCCcEEEEECCCC
Q 036317 79 GSGDGSVYAWSARSG 93 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~ 93 (106)
+|.||.|..|+++.-
T Consensus 311 ~ssDG~i~~W~~~~l 325 (555)
T KOG1587|consen 311 LSSDGSICSWDTDML 325 (555)
T ss_pred EecCCcEeeeecccc
Confidence 888999999988753
No 232
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.91 E-value=0.00027 Score=53.64 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=73.2
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCC-eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEG-HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~-~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
++++.|+...+..+++.++.+..|+ .+-++|..++++ ...-+.+.++.-+||| ++++.+.....+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG-----------K~~vvaNdr~el 425 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG-----------KKVVVANDRFEL 425 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC-----------cEEEEEcCceEE
Confidence 4567899999999999899999888 899999999987 3344567789999999 999999999999
Q ss_pred EEEECCCCC----------CCcEEEeCCCC
Q 036317 86 YAWSARSGK----------EPPVIKWAPGS 105 (106)
Q Consensus 86 ~~wd~~~~~----------~v~~i~~sp~~ 105 (106)
.+.|+++|+ -|..+.|||+.
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCc
Confidence 999999997 78888999874
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.90 E-value=7.2e-05 Score=60.20 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=58.4
Q ss_pred eEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317 16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR 91 (106)
Q Consensus 16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~ 91 (106)
.-+.++++.-++++++.-+++.+|+..-.+. .+|.+.+-++.++-|| +++++.|+|+++++|+++
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg-----------~~i~s~SdDRsiRlW~i~ 205 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG-----------RYIASVSDDRSIRLWPID 205 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCC-----------cEEEEEecCcceeeeecc
Confidence 3455678888999999999999999873333 5678888899999999 999999999999999999
Q ss_pred CCC
Q 036317 92 SGK 94 (106)
Q Consensus 92 ~~~ 94 (106)
+++
T Consensus 206 s~~ 208 (967)
T KOG0974|consen 206 SRE 208 (967)
T ss_pred ccc
Confidence 988
No 234
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.00015 Score=53.17 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=45.5
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC---ce-eccCCCcEEEEEecCCcceeeeeeec
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG---TL-PVSHNSTLEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~---~~-~~~~~~~~~~~fs~d~~~~~~~~~~~ 72 (106)
+.++-+.|||||.++++++-|...++|+.... +. .-..+++...+|+|+|+.|.+++...
T Consensus 239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred CceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence 46889999999999999999999999964322 22 44555888899999996665554333
No 235
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.89 E-value=0.00012 Score=52.26 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=60.6
Q ss_pred CCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcC-CCce-----eccCCCcEEEEEe-cCCcceeeeeeecccEEEEecCC
Q 036317 11 DVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSF-QGTL-----PVSHNSTLEASFS-QHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 11 ~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~-~~~~-----~~~~~~~~~~~fs-~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
|.-++...+|+. +.+.+.+++.|+.+..||.. .++. +.|...++++.-+ |+. .+|+||++|
T Consensus 164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~-----------~~I~TGsYD 232 (339)
T KOG0280|consen 164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP-----------TYIATGSYD 232 (339)
T ss_pred cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC-----------ceEEEeccc
Confidence 344777788875 45677899999999999998 3433 3345555555444 456 899999999
Q ss_pred CcEEEEECCC-CC---------CCcEEEeCCC
Q 036317 83 GSVYAWSARS-GK---------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~-~~---------~v~~i~~sp~ 104 (106)
..|++||.+. ++ .|..++++|.
T Consensus 233 e~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred cceeeeehhcccCccccCccccceEEEEecch
Confidence 9999999995 34 6677777763
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.86 E-value=5.2e-05 Score=56.94 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=61.5
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
+++..++-+|-.-.+-++..+|+|-+|.....+. ..+.+.+.++++.++| +|.+|.+.|..++||
T Consensus 252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G-----------~YMaTtG~Dr~~kIW 320 (545)
T KOG1272|consen 252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG-----------RYMATTGLDRKVKIW 320 (545)
T ss_pred CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC-----------cEEeecccccceeEe
Confidence 4677778888888888889999999999876665 5678888899999999 999999999999999
Q ss_pred ECCCCC
Q 036317 89 SARSGK 94 (106)
Q Consensus 89 d~~~~~ 94 (106)
|++.-.
T Consensus 321 DlR~~~ 326 (545)
T KOG1272|consen 321 DLRNFY 326 (545)
T ss_pred eecccc
Confidence 998654
No 237
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.86 E-value=7.8e-05 Score=52.69 Aligned_cols=86 Identities=7% Similarity=0.071 Sum_probs=67.0
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC--Cce------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ--GTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~--~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
..+.++|.++++.+.-..=++++.+..+..|++.. +.+ .-.+..+..+.+-||+ +.++|++
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-----------KIlATAG 270 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-----------KILATAG 270 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC-----------cEEeecc
Confidence 34567899999987655557778888888887653 333 1122234568999999 9999999
Q ss_pred CCCcEEEEECCCCC----------CCcEEEeCCCC
Q 036317 81 GDGSVYAWSARSGK----------EPPVIKWAPGS 105 (106)
Q Consensus 81 ~d~~i~~wd~~~~~----------~v~~i~~sp~~ 105 (106)
=|+.|+++..++++ .|++++|+|+.
T Consensus 271 WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~ 305 (323)
T KOG0322|consen 271 WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC 305 (323)
T ss_pred cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC
Confidence 99999999999998 89999999984
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.85 E-value=0.00013 Score=53.13 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=62.7
Q ss_pred CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-CCcEEE
Q 036317 14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DGSVYA 87 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~~i~~ 87 (106)
.|..+.|+.|..+++.+. .++.|.+|++...+- ......+.+.+||||| +.|+..++ |-.|.+
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdg-----------rhiL~tseF~lriTV 118 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDG-----------RHILLTSEFDLRITV 118 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCc-----------ceEeeeecceeEEEE
Confidence 677888999988887664 666999999877665 3345566789999999 77766655 779999
Q ss_pred EECCCCC---------CCcEEEeCCC
Q 036317 88 WSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 88 wd~~~~~---------~v~~i~~sp~ 104 (106)
|.+.+.+ -+..++|+|+
T Consensus 119 WSL~t~~~~~~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 119 WSLNTQKGYLLPHPKTNVKGYAFHPD 144 (447)
T ss_pred EEeccceeEEecccccCceeEEECCC
Confidence 9999876 5678888875
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.85 E-value=0.00012 Score=53.27 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.7
Q ss_pred CCeeEEEECCCCCeEEE-EeCCCeEEEEEcCCCce
Q 036317 13 SDANEVKLSNDGRLMLL-TTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~-~~~~~~i~l~d~~~~~~ 46 (106)
..+.++.|||||+.++. +..+-.|.+|.+-+.+.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 48999999999987764 45788899998765543
No 240
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.83 E-value=7.4e-05 Score=58.23 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=57.1
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
+.+.+|...|.+++.=|++ .+++++.|++|++|...+-.. .+|...+..+++-+++ . +++++-||
T Consensus 134 ~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-----------~-flScsNDg 200 (745)
T KOG0301|consen 134 YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-----------H-FLSCSNDG 200 (745)
T ss_pred cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-----------C-eEeecCCc
Confidence 4567788888888888888 588999999999998733221 5566666677877775 4 57888999
Q ss_pred cEEEEECCCCC
Q 036317 84 SVYAWSARSGK 94 (106)
Q Consensus 84 ~i~~wd~~~~~ 94 (106)
.|++|++ +|+
T Consensus 201 ~Ir~w~~-~ge 210 (745)
T KOG0301|consen 201 SIRLWDL-DGE 210 (745)
T ss_pred eEEEEec-cCc
Confidence 9999999 555
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.83 E-value=0.00037 Score=50.56 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=50.6
Q ss_pred CeeEEEECCCCCeEEEEe-CCCeEEEEEc--CCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CCC
Q 036317 14 DANEVKLSNDGRLMLLTT-LEGHIHVLHS--FQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDG 83 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~--~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~ 83 (106)
....++++|||++|.++. ..+.|.++++ .++++ +..-..+..+.++|+| ++|+.+. .++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-----------~~l~Va~~~s~ 314 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-----------RYLYVANQDSN 314 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-----------SEEEEEETTTT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-----------CEEEEEecCCC
Confidence 578999999999987765 6688999998 44665 2222346779999999 8888776 456
Q ss_pred cEEEEEC--CCCC
Q 036317 84 SVYAWSA--RSGK 94 (106)
Q Consensus 84 ~i~~wd~--~~~~ 94 (106)
.|.+|++ ++|+
T Consensus 315 ~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 315 TVSVFDIDPDTGK 327 (345)
T ss_dssp EEEEEEEETTTTE
T ss_pred eEEEEEEeCCCCc
Confidence 8998866 4665
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.00036 Score=52.26 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=51.2
Q ss_pred eeEEEECCCCCeEEEEeC-CCe--EEEEEcCC--Cce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC---CC
Q 036317 15 ANEVKLSNDGRLMLLTTL-EGH--IHVLHSFQ--GTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG---DG 83 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~-~~~--i~l~d~~~--~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~---d~ 83 (106)
.....|||||++|+..+. ++. +.++++.. +.. ...........||||| ++|+..+. ..
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG-----------~~Laf~~~~~g~~ 351 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG-----------KKIAFCSVIKGVR 351 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC-----------CEEEEEEcCCCCc
Confidence 457899999998887663 453 44555432 222 2222344568999999 76665433 24
Q ss_pred cEEEEECCCCC---------CCcEEEeCCC
Q 036317 84 SVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 84 ~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
.|++||+++++ .+....|+|+
T Consensus 352 ~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpD 381 (428)
T PRK01029 352 QICVYDLATGRDYQLTTSPENKESPSWAID 381 (428)
T ss_pred EEEEEECCCCCeEEccCCCCCccceEECCC
Confidence 79999999886 3456677775
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.82 E-value=0.00033 Score=50.48 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=52.1
Q ss_pred eCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC-cEEEEECCCCC---------
Q 036317 31 TLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG-SVYAWSARSGK--------- 94 (106)
Q Consensus 31 ~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~-~i~~wd~~~~~--------- 94 (106)
-.-|++.|.|+..-+. +.|...+..++...+| ..|||+|..| -|+|||.++|.
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-----------t~vATaStkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-----------TLVATASTKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-----------cEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence 3558888888754333 4466667778999999 9999999998 58999999997
Q ss_pred ---CCcEEEeCCCC
Q 036317 95 ---EPPVIKWAPGS 105 (106)
Q Consensus 95 ---~v~~i~~sp~~ 105 (106)
.|.|++|||+.
T Consensus 225 d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 225 DRADIYCIAFSPNS 238 (346)
T ss_pred chheEEEEEeCCCc
Confidence 88999999975
No 244
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.00018 Score=52.27 Aligned_cols=66 Identities=24% Similarity=0.363 Sum_probs=47.7
Q ss_pred CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEec--CCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCcE
Q 036317 25 RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQ--HLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPV 98 (106)
Q Consensus 25 ~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~--d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~ 98 (106)
..+|++..++.+++||..+++. ..+...+..+.|.- .. .-|.+++.||+|++||+++...+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~-----------h~v~s~ssDG~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSP-----------HGVISCSSDGTVRLWDIRSQAESAR 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCC-----------CeeEEeccCCeEEEEEeecchhhhh
Confidence 4588889999999999999876 33333333455554 23 5688999999999999998764444
Q ss_pred EEe
Q 036317 99 IKW 101 (106)
Q Consensus 99 i~~ 101 (106)
+.|
T Consensus 110 ~~~ 112 (376)
T KOG1188|consen 110 ISW 112 (376)
T ss_pred eec
Confidence 444
No 245
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.00048 Score=48.44 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=51.1
Q ss_pred cCCCCCCeeEEEE-CCCCCeEEEEeCCCeEEEEEcCCCce---ec--cCCCcEE-------EEEecCCcceeeeeeeccc
Q 036317 8 DGGDVSDANEVKL-SNDGRLMLLTTLEGHIHVLHSFQGTL---PV--SHNSTLE-------ASFSQHLSLVALSVLILRS 74 (106)
Q Consensus 8 ~~~~~~~v~~v~~-spdg~~l~~~~~~~~i~l~d~~~~~~---~~--~~~~~~~-------~~fs~d~~~~~~~~~~~~~ 74 (106)
..||..-|.++.- +..++ +++++.||++++||.++++. .. .+..... -+..-+. .
T Consensus 152 ~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-----------d 219 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-----------D 219 (325)
T ss_pred EcCCcceeeeeeecccCcc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-----------c
Confidence 4577778888888 66777 89999999999999999886 11 1111111 1223344 7
Q ss_pred EEEEecCCCcEEEEECCCCC
Q 036317 75 WVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 75 ~i~t~s~d~~i~~wd~~~~~ 94 (106)
++++|.. ..+.+|++++.+
T Consensus 220 WlvCGgG-p~lslwhLrsse 238 (325)
T KOG0649|consen 220 WLVCGGG-PKLSLWHLRSSE 238 (325)
T ss_pred eEEecCC-CceeEEeccCCC
Confidence 7777754 378899998877
No 246
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.67 E-value=3.5e-05 Score=61.37 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=62.7
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
...||.++|+.++.+.....+++++.|..|++|-..++.. .++.+.++++.|+|-- +.+.|
T Consensus 227 s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---------------sss~d 291 (1113)
T KOG0644|consen 227 SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---------------SSSDD 291 (1113)
T ss_pred cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---------------cCCCC
Confidence 3467888999999999999999999999999999999887 6788999999999874 57789
Q ss_pred CcEEEEECC
Q 036317 83 GSVYAWSAR 91 (106)
Q Consensus 83 ~~i~~wd~~ 91 (106)
|++++||.+
T Consensus 292 gt~~~wd~r 300 (1113)
T KOG0644|consen 292 GTCRIWDAR 300 (1113)
T ss_pred CceEecccc
Confidence 999999998
No 247
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.00053 Score=56.11 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=60.7
Q ss_pred CCeeEEEECCCCCe-EEEEeCCCeEEEEEcCCC-ce----e---ccCCC-cEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317 13 SDANEVKLSNDGRL-MLLTTLEGHIHVLHSFQG-TL----P---VSHNS-TLEASFSQHLSLVALSVLILRSWVLEGSGD 82 (106)
Q Consensus 13 ~~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~-~~----~---~~~~~-~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d 82 (106)
.+|..+.+-+.|-- +++++.+|.|.+||+... +. . -..+. .++..-+++. ..|++|+.
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha-----------piiAsGs~- 1324 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA-----------PIIASGSA- 1324 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC-----------CeeeecCc-
Confidence 35999999886654 999999999999998763 22 1 11232 5667778888 99999998
Q ss_pred CcEEEEECCCCC----------------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK----------------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~----------------~v~~i~~sp~ 104 (106)
+.|+||++...+ .+.|++|+|-
T Consensus 1325 q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1325 QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred ceEEEEecChhhhcccccCcccccCcCCCcceeeecch
Confidence 899999997433 6678888874
No 248
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00037 Score=54.05 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=57.0
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCc-EEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNST-LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~-~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
.+.-+.|+|.-..+|.++.+|++.+....-.++ +.+...+ .+.+|-||| +.|+.|-+||+|++-|
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DG-----------kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDG-----------KLLAVGFKDGTIRLHD 90 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCC-----------CEEEEEecCCeEEEEE
Confidence 788999999999999999999887766554444 2222233 479999999 9999999999999999
Q ss_pred CCCCC
Q 036317 90 ARSGK 94 (106)
Q Consensus 90 ~~~~~ 94 (106)
+++|.
T Consensus 91 ve~~~ 95 (665)
T KOG4640|consen 91 VEKGG 95 (665)
T ss_pred ccCCC
Confidence 99987
No 249
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00038 Score=53.53 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=52.0
Q ss_pred eEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-----------C
Q 036317 16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-----------D 82 (106)
Q Consensus 16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-----------d 82 (106)
+.+.|||.|.||++-...| |.+|-..+-.. ...|..+.-+.|||.. +|++|=+. .
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~E-----------kYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNE-----------KYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCcc-----------ceEEEecCCccccCcccCCC
Confidence 5799999999888876666 78888766433 4456667779999999 77776543 3
Q ss_pred CcEEEEECCCCC
Q 036317 83 GSVYAWSARSGK 94 (106)
Q Consensus 83 ~~i~~wd~~~~~ 94 (106)
..+.|||+.+|.
T Consensus 282 ~~l~IWDI~tG~ 293 (698)
T KOG2314|consen 282 QQLIIWDIATGL 293 (698)
T ss_pred ceEEEEEccccc
Confidence 589999999997
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.60 E-value=0.00038 Score=51.29 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=46.5
Q ss_pred EEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------
Q 036317 28 LLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK--------- 94 (106)
Q Consensus 28 ~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~--------- 94 (106)
++-..++++.++|..+.+. +..........|+||| +++...+.|+.|.++|+.+++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-----------r~~yv~~rdg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-----------RYLYVANRDGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-----------SEEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-----------CEEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence 4556789999999999887 2222233457899999 999999999999999999998
Q ss_pred CCcEEEeCCC
Q 036317 95 EPPVIKWAPG 104 (106)
Q Consensus 95 ~v~~i~~sp~ 104 (106)
...++++||+
T Consensus 79 ~~~~i~~s~D 88 (369)
T PF02239_consen 79 NPRGIAVSPD 88 (369)
T ss_dssp EEEEEEE--T
T ss_pred CcceEEEcCC
Confidence 4455666653
No 251
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.57 E-value=0.00028 Score=32.77 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.5
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEE
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLH 40 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d 40 (106)
..+...|.++.|+++++.+++++.++.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35567899999999999999999999999986
No 252
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.56 E-value=0.0019 Score=48.36 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=47.5
Q ss_pred CeeEEEECCCCCeEEEEeC---CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-CC--c
Q 036317 14 DANEVKLSNDGRLMLLTTL---EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DG--S 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~---~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~--~ 84 (106)
......|||||+.++.... +..+.++|+.+++. ...........|+||| +.|+-.+. .+ .
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG-----------~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDD-----------KRIVFVSDRLGYPN 302 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCC-----------CEEEEEECCCCCce
Confidence 3556789999998876542 35788889888776 2222223457899999 65555442 22 7
Q ss_pred EEEEECCCCC
Q 036317 85 VYAWSARSGK 94 (106)
Q Consensus 85 i~~wd~~~~~ 94 (106)
|++.|+.+|+
T Consensus 303 Iy~~dl~~g~ 312 (419)
T PRK04043 303 IFMKKLNSGS 312 (419)
T ss_pred EEEEECCCCC
Confidence 8888888776
No 253
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.00085 Score=50.00 Aligned_cols=72 Identities=7% Similarity=-0.051 Sum_probs=61.8
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
++.|.+++|+...+++.++..++++.+-|+++.+- ....+.+....-+|.. ..+++.+.++.|
T Consensus 105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-----------N~~~~~t~~~~V 173 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-----------NTLIVVTRAKLV 173 (609)
T ss_pred ccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCC-----------ceEEEEecCceE
Confidence 36899999999999999999999999999998765 2234467778888988 999999999999
Q ss_pred EEEECCCCC
Q 036317 86 YAWSARSGK 94 (106)
Q Consensus 86 ~~wd~~~~~ 94 (106)
.+||.+..+
T Consensus 174 ~~~D~Rd~~ 182 (609)
T KOG4227|consen 174 SFIDNRDRQ 182 (609)
T ss_pred EEEeccCCC
Confidence 999999766
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.56 E-value=0.0017 Score=47.77 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=56.5
Q ss_pred CeeEEEECCCCCeEEEEeC----------CCeEEEEEcCCCceec---cCCCcEEEEEecCCcceeeeeeeccc-EEEEe
Q 036317 14 DANEVKLSNDGRLMLLTTL----------EGHIHVLHSFQGTLPV---SHNSTLEASFSQHLSLVALSVLILRS-WVLEG 79 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~----------~~~i~l~d~~~~~~~~---~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~ 79 (106)
.+.-++++|||+++.+... .+++.++|..+++... -...+..+.++||+ + .+.+.
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dg-----------kp~lyvt 317 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDA-----------KPLLYAL 317 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCC-----------CeEEEEe
Confidence 3445999999998887432 2589999999998811 12355679999999 8 76666
Q ss_pred c-CCCcEEEEECCCCCCCcEE
Q 036317 80 S-GDGSVYAWSARSGKEPPVI 99 (106)
Q Consensus 80 s-~d~~i~~wd~~~~~~v~~i 99 (106)
+ .++.|.+.|+.+++.+..+
T Consensus 318 n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 318 STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCCcEEEEECcCCeEEeee
Confidence 5 5778999999999866555
No 255
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00048 Score=53.03 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCCCCeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce--------------eccCCCcEEEEEecCCcceeeeeeecc
Q 036317 10 GDVSDANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL--------------PVSHNSTLEASFSQHLSLVALSVLILR 73 (106)
Q Consensus 10 ~~~~~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~--------------~~~~~~~~~~~fs~d~~~~~~~~~~~~ 73 (106)
+|...|.+++|=|. .+.++++..|+.|+++|+..-+. ..+..++..++-.|++ .
T Consensus 91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~----------P 160 (758)
T KOG1310|consen 91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG----------P 160 (758)
T ss_pred ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC----------C
Confidence 66678999999884 66778889999999999875332 1233344445555665 4
Q ss_pred cEEEEecCCCcEEEEECCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSG 93 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~ 93 (106)
..+.++++||+|+.+|++..
T Consensus 161 htfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 161 HTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ceEEEecCCcceeeecccCC
Confidence 67889999999999999974
No 256
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.00045 Score=53.29 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=54.4
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
.|++++|+.||-.+++++.+|.+.|+|+.+.+. ....-++..+.|-+.+ -...|++.. ...++||
T Consensus 230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~---------~q~~v~S~D-k~~~kiW 299 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD---------QQNKVVSMD-KRILKIW 299 (703)
T ss_pred cceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC---------CCceEEecc-hHHhhhc
Confidence 599999999999999999999999999988776 2233345567776542 004565553 4589999
Q ss_pred ECCCCC
Q 036317 89 SARSGK 94 (106)
Q Consensus 89 d~~~~~ 94 (106)
|-.+|+
T Consensus 300 d~~~Gk 305 (703)
T KOG2321|consen 300 DECTGK 305 (703)
T ss_pred ccccCC
Confidence 999998
No 257
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.50 E-value=0.00058 Score=52.86 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=58.8
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcC-CCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSF-QGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~-~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
.+.+.|+.+.++|=+..+..++.|-+++||.-. .... ..+...+.+++|||.. ...++++..||.
T Consensus 396 ~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr----------pavF~~~d~~G~ 465 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR----------PAVFATVDGDGN 465 (555)
T ss_pred ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC----------ceEEEEEcCCCc
Confidence 445799999999988877777779999999976 3333 2344557889999987 356788899999
Q ss_pred EEEEECCCCC
Q 036317 85 VYAWSARSGK 94 (106)
Q Consensus 85 i~~wd~~~~~ 94 (106)
+.+||+....
T Consensus 466 l~iWDLl~~~ 475 (555)
T KOG1587|consen 466 LDIWDLLQDD 475 (555)
T ss_pred eehhhhhccc
Confidence 9999998544
No 258
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.001 Score=49.06 Aligned_cols=80 Identities=11% Similarity=0.171 Sum_probs=67.3
Q ss_pred CeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 14 DANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 14 ~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
.++++.|-+. ...+++++.-+++++||...++- .....++.+....|++ .+|.+|..-+.+.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g-----------n~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG-----------NFIYTGNTKGQLA 272 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC-----------cEEEEecccchhh
Confidence 5678889877 88899999999999999987765 2244566778899999 9999999999999
Q ss_pred EEECCCCC-----------CCcEEEeCCC
Q 036317 87 AWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 87 ~wd~~~~~-----------~v~~i~~sp~ 104 (106)
.+|++.++ .|++|--+|+
T Consensus 273 ~FD~r~~kl~g~~~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITGSIRSIHCHPT 301 (412)
T ss_pred eecccCceeeccccCCccCCcceEEEcCC
Confidence 99999987 6677776665
No 259
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.47 E-value=0.0034 Score=47.01 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=48.3
Q ss_pred CeeEEEECCCCCe-EEEEeC---CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 14 DANEVKLSNDGRL-MLLTTL---EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 14 ~v~~v~~spdg~~-l~~~~~---~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
....-.|||||+. ++..+. +..++++|+.+++. ....+......|||||+.+++.... ..+..|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~--------~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP--------KGQPDIY 260 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc--------CCCcEEE
Confidence 5668899999985 554433 36789999988876 2233444567899999333332211 2245788
Q ss_pred EEECCCCC
Q 036317 87 AWSARSGK 94 (106)
Q Consensus 87 ~wd~~~~~ 94 (106)
++|+.+++
T Consensus 261 ~~dl~~g~ 268 (419)
T PRK04043 261 LYDTNTKT 268 (419)
T ss_pred EEECCCCc
Confidence 88988776
No 260
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.00041 Score=52.50 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=61.3
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
.++..|++-|+.|.|...|..+++++.|.++.+||+..++. .+|...+-...|-|.. . .+.|++.+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s--------~-d~ti~~~s 206 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS--------G-DRTIVTSS 206 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC--------C-CcCceecc
Confidence 45678889999999999999999999999999999988876 2343444445566542 0 17899999
Q ss_pred CCCcEEEEECCC
Q 036317 81 GDGSVYAWSARS 92 (106)
Q Consensus 81 ~d~~i~~wd~~~ 92 (106)
+||.+++=.+..
T Consensus 207 ~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 207 RDGQVRVSEILE 218 (559)
T ss_pred ccCceeeeeecc
Confidence 999999987764
No 261
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.46 E-value=0.00022 Score=50.36 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=56.7
Q ss_pred CeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 14 DANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 14 ~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
.|.+++-+|..+.+ ++++.+|.+-+||...... ..++..+..+.|+|.. ...+.++++||++-.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~----------p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN----------PEHLFTCSEDGSLWH 250 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC----------chheeEecCCCcEEE
Confidence 58888889976655 5778899999999987755 4466777889999875 378999999999999
Q ss_pred EECCC
Q 036317 88 WSARS 92 (106)
Q Consensus 88 wd~~~ 92 (106)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99874
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.44 E-value=0.0033 Score=45.67 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=54.5
Q ss_pred CeeEEEECCCCCeEEEEe-CCCeEEEEEcC--CCce---------ec-c--CCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317 14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSF--QGTL---------PV-S--HNSTLEASFSQHLSLVALSVLILRSWVLE 78 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~--~~~~---------~~-~--~~~~~~~~fs~d~~~~~~~~~~~~~~i~t 78 (106)
.-+.+.|+|||+++.+.. .+++|.+++.. ++.+ +. . ......+.++||| ++|..
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg-----------~~lyv 261 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG-----------RFLYV 261 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS-----------SEEEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC-----------CEEEE
Confidence 578999999999886665 67889999887 5544 11 1 1245578999999 88766
Q ss_pred ecC-CCcEEEEECC--CCC------------CCcEEEeCCC
Q 036317 79 GSG-DGSVYAWSAR--SGK------------EPPVIKWAPG 104 (106)
Q Consensus 79 ~s~-d~~i~~wd~~--~~~------------~v~~i~~sp~ 104 (106)
+.. +.+|.++++. +|+ .++.+.++|+
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 654 5689999983 344 4677777664
No 263
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.40 E-value=0.0023 Score=45.46 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=50.0
Q ss_pred EEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCc-EEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 17 EVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNST-LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 17 ~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~-~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
.++.++||+ +++..+|..|.|-.+.+.-. +....+. ..++||||+ ..+|.+...|+|++
T Consensus 2 ~~~~~~~Gk-~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-----------tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 2 HLALSSDGK-LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-----------TLLAYAESTGTIRV 69 (282)
T ss_pred ceeecCCCc-EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-----------cEEEEEcCCCeEEE
Confidence 367889999 56667888888877665432 3334444 469999999 99999999999999
Q ss_pred EECCCCC
Q 036317 88 WSARSGK 94 (106)
Q Consensus 88 wd~~~~~ 94 (106)
+|+...+
T Consensus 70 fdl~g~~ 76 (282)
T PF15492_consen 70 FDLMGSE 76 (282)
T ss_pred Eecccce
Confidence 9998543
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.0018 Score=51.52 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=71.8
Q ss_pred eeeecCCCC-CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------------------eccCCCcEEEEEecCCc
Q 036317 4 DIFSDGGDV-SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------------------PVSHNSTLEASFSQHLS 63 (106)
Q Consensus 4 ~~~~~~~~~-~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------------------~~~~~~~~~~~fs~d~~ 63 (106)
-.+++..+. ....+++|+....|+++++.||.+++.-+.+... .+|.+++.-+.|..+.
T Consensus 5 lskki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~- 83 (1189)
T KOG2041|consen 5 LSKKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN- 83 (1189)
T ss_pred eecccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-
Confidence 345554433 4899999999999999999999999987654432 3466778889999888
Q ss_pred ceeeeeeecccEEEEecCCCcEEEEECCCCC------------CCcEEEeCC
Q 036317 64 LVALSVLILRSWVLEGSGDGSVYAWSARSGK------------EPPVIKWAP 103 (106)
Q Consensus 64 ~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~------------~v~~i~~sp 103 (106)
+.+-|++.+|-|.+|=+..|+ .|.+++|+.
T Consensus 84 ----------QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~ 125 (1189)
T KOG2041|consen 84 ----------QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL 125 (1189)
T ss_pred ----------ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC
Confidence 889999999999999998887 677888864
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.35 E-value=0.0022 Score=53.05 Aligned_cols=69 Identities=9% Similarity=0.129 Sum_probs=56.6
Q ss_pred eeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-----c------------cCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317 15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-----V------------SHNSTLEASFSQHLSLVALSVLILRSWVL 77 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-----~------------~~~~~~~~~fs~d~~~~~~~~~~~~~~i~ 77 (106)
-..++++++|+.+++-..++.|++||..++.+. + ....+..++++++| +.++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-----------~lyV 874 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-----------RLFV 874 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-----------CEEE
Confidence 458999999998888889999999999877651 1 11245678999999 9888
Q ss_pred EecCCCcEEEEECCCCC
Q 036317 78 EGSGDGSVYAWSARSGK 94 (106)
Q Consensus 78 t~s~d~~i~~wd~~~~~ 94 (106)
+-..++.|++||+++++
T Consensus 875 aDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 875 ADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EECCCCEEEEEECCCCc
Confidence 88889999999999876
No 266
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.0005 Score=50.26 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-------eccCCC--cEEEEEecCCcceeeeeeecccEEEEec
Q 036317 11 DVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNS--TLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 11 ~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~--~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
|.+.|++++.=. ++++++++.+++.|.+||..--+. .+|.+. ...+...+.. ..|++++
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-----------g~I~s~G 365 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-----------GSIFSVG 365 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-----------ceEEEcc
Confidence 345677776654 788999999999999999753221 222221 2235556777 8999999
Q ss_pred CCCcEEEEECCCCC
Q 036317 81 GDGSVYAWSARSGK 94 (106)
Q Consensus 81 ~d~~i~~wd~~~~~ 94 (106)
.|...++|.+++|.
T Consensus 366 dDcytRiWsl~~gh 379 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGH 379 (425)
T ss_pred CeeEEEEEecccCc
Confidence 99999999999887
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.32 E-value=0.0014 Score=47.96 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=52.6
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEc-CCCce----ec-----------c-CCCc---EEEEEecCCcceeeeeeecc
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHS-FQGTL----PV-----------S-HNST---LEASFSQHLSLVALSVLILR 73 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~-~~~~~----~~-----------~-~~~~---~~~~fs~d~~~~~~~~~~~~ 73 (106)
.|++++|++.|+|+++-. --++++||+ +..+. +. . ...+ -.|+|+-++
T Consensus 274 SISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~----------- 341 (433)
T KOG1354|consen 274 SISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND----------- 341 (433)
T ss_pred hhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-----------
Confidence 788999999999888743 368999998 44443 11 1 1112 248899998
Q ss_pred cEEEEecCCCcEEEEECCCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~ 94 (106)
.+++||+.+...+++++..|.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEecccccceEEEecCCCCc
Confidence 999999999999999977665
No 268
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.31 E-value=0.00056 Score=31.63 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=25.9
Q ss_pred cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 49 SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 49 ~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
+...+..+.|.+++ .++++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~-----------~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDG-----------KYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCC-----------CEEEEecCCCeEEEcC
Confidence 44566788999999 9999999999999996
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.30 E-value=0.00078 Score=49.20 Aligned_cols=78 Identities=13% Similarity=0.199 Sum_probs=61.1
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
.++.++.+.+.+++|+|..+.+.++..|..+-+||+--++. .++.+.+..+..-+-- +.+.+++
T Consensus 191 ~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-----------~~l~S~~ 259 (404)
T KOG1409|consen 191 TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-----------RQLISCG 259 (404)
T ss_pred EEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-----------eeeeecc
Confidence 44567788999999999999999999999999999854443 3344445445555566 8889999
Q ss_pred CCCcEEEEECCCCC
Q 036317 81 GDGSVYAWSARSGK 94 (106)
Q Consensus 81 ~d~~i~~wd~~~~~ 94 (106)
+||.|.+||+....
T Consensus 260 edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 260 EDGGIVVWNMNVKR 273 (404)
T ss_pred CCCeEEEEecccee
Confidence 99999999997543
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0031 Score=48.69 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=55.2
Q ss_pred CCeeEEEECCCCCeEEEEeC-----------CCeEEEEEcCCCcee----c--cCCCc-EEEEEecCCcceeeeeeeccc
Q 036317 13 SDANEVKLSNDGRLMLLTTL-----------EGHIHVLHSFQGTLP----V--SHNST-LEASFSQHLSLVALSVLILRS 74 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~-----------~~~i~l~d~~~~~~~----~--~~~~~-~~~~fs~d~~~~~~~~~~~~~ 74 (106)
-.|..++|||..+||++=+. .+.+.|||+.+|... . ..... .-..||.|+ +
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-----------K 318 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-----------K 318 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-----------c
Confidence 37889999999999987642 278899999999881 1 11111 237899999 5
Q ss_pred EEEEecCCCcEEEEECCC--------CC--CCcEEEeCCCC
Q 036317 75 WVLEGSGDGSVYAWSARS--------GK--EPPVIKWAPGS 105 (106)
Q Consensus 75 ~i~t~s~d~~i~~wd~~~--------~~--~v~~i~~sp~~ 105 (106)
|+|.-..| +|.|++..+ -+ .|+...|+|..
T Consensus 319 y~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 319 YFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred eeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCc
Confidence 55544333 566665543 22 77888888864
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.21 E-value=0.0044 Score=45.62 Aligned_cols=68 Identities=9% Similarity=-0.031 Sum_probs=51.5
Q ss_pred EECCCCCeEEEEeC----------CCeEEEEEcCCCce----ec-c------CCCcEEEEEecCCcceeeeeeecccEEE
Q 036317 19 KLSNDGRLMLLTTL----------EGHIHVLHSFQGTL----PV-S------HNSTLEASFSQHLSLVALSVLILRSWVL 77 (106)
Q Consensus 19 ~~spdg~~l~~~~~----------~~~i~l~d~~~~~~----~~-~------~~~~~~~~fs~d~~~~~~~~~~~~~~i~ 77 (106)
.+||||+.+.++.. ++.|.+||..+.+. +. . -.......+|||| +++.
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg-----------k~l~ 120 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN-----------KTLL 120 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC-----------CEEE
Confidence 49999999977655 78999999999887 11 1 1122358999999 8888
Q ss_pred EecC--CCcEEEEECCCCCCCc
Q 036317 78 EGSG--DGSVYAWSARSGKEPP 97 (106)
Q Consensus 78 t~s~--d~~i~~wd~~~~~~v~ 97 (106)
.... +..|.+.|+++++.+.
T Consensus 121 V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 121 FYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EecCCCCCEEEEEECCCCcEEE
Confidence 6653 6799999999998433
No 272
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.21 E-value=0.0028 Score=33.36 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=27.8
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEc
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHS 41 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~ 41 (106)
..+|..++|+|....+|.++.+|++.++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 358999999999999999999999999987
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.023 Score=41.62 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=58.7
Q ss_pred CeeEEEECCCCCeEEEEe-CCCeEEEEEcCC-Cce------ecc----------CCCcEEEEEecCCcceeeeeeecccE
Q 036317 14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQ-GTL------PVS----------HNSTLEASFSQHLSLVALSVLILRSW 75 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~-~~~------~~~----------~~~~~~~~fs~d~~~~~~~~~~~~~~ 75 (106)
.-..++++++|++++++. ..+.|.++-+.. |.+ ..+ +..+=.+.|.|++ ++
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-----------~~ 158 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-----------RY 158 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-----------CE
Confidence 447999999999998887 558888887743 554 001 1113347899999 99
Q ss_pred EEEecCC-CcEEEEECCCCC-------------CCcEEEeCCC
Q 036317 76 VLEGSGD-GSVYAWSARSGK-------------EPPVIKWAPG 104 (106)
Q Consensus 76 i~t~s~d-~~i~~wd~~~~~-------------~v~~i~~sp~ 104 (106)
|++.+-. ..|.++++++|+ ..+-|.|+|+
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn 201 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPN 201 (346)
T ss_pred EEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCC
Confidence 8888653 389999999887 6678888886
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.97 E-value=0.023 Score=40.63 Aligned_cols=79 Identities=13% Similarity=0.031 Sum_probs=55.7
Q ss_pred eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
=.+..|+.....+|++.+|+++.|||+..... +.+.+.+..|.|++.| ++ ..+.-.-.-+.+
T Consensus 206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g--------~l-DLLf~sEhfs~~ 276 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG--------LL-DLLFISEHFSRV 276 (344)
T ss_pred ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC--------cc-eEEEEecCcceE
Confidence 34677888888899999999999999876443 3456777789999877 11 223333334689
Q ss_pred EEEECCCCCCCcEEEeC
Q 036317 86 YAWSARSGKEPPVIKWA 102 (106)
Q Consensus 86 ~~wd~~~~~~v~~i~~s 102 (106)
.+.|+++++.++.|...
T Consensus 277 hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 277 HVVDTRNYVNHQVIVIP 293 (344)
T ss_pred EEEEcccCceeeEEecC
Confidence 99999998855444433
No 275
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.96 E-value=0.006 Score=50.76 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=50.1
Q ss_pred CCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCcee-----------ccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 12 VSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTLP-----------VSHNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 12 ~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~~-----------~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
...+..++.++ ++.++++++.||+|++||...-... ...+++..+.+.+.+ ..+|.+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-----------~~~Av~ 1116 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-----------DQFAVS 1116 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-----------CeEEEE
Confidence 44666777765 5599999999999999997543221 012233344445555 899999
Q ss_pred cCCCcEEEEECCC
Q 036317 80 SGDGSVYAWSARS 92 (106)
Q Consensus 80 s~d~~i~~wd~~~ 92 (106)
+.||.|.+.++..
T Consensus 1117 t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDH 1129 (1431)
T ss_pred cCCCeEEEEEccc
Confidence 9999999999886
No 276
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.0035 Score=49.33 Aligned_cols=81 Identities=12% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---ec--cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PV--SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
..|.--.++..+++++.++..|.+++++-..++. ++ .++.++.++.|++. .++|.|+..|.|.+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-----------~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-----------YLVAAGTASGRVSV 102 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-----------HhhhhhcCCceEEe
Confidence 3677778889999999999999999999877766 22 34455678899999 99999999999999
Q ss_pred EECCCCC----------------CCcEEEeCCC
Q 036317 88 WSARSGK----------------EPPVIKWAPG 104 (106)
Q Consensus 88 wd~~~~~----------------~v~~i~~sp~ 104 (106)
+.+..+. .|.++.|+++
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~ 135 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN 135 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEeccc
Confidence 9888754 6888999886
No 277
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.94 E-value=0.0046 Score=47.15 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=55.7
Q ss_pred CeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce-e-ccCC-CcEEEEEecCCcceeeeeeecccEEEEe------cC
Q 036317 14 DANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL-P-VSHN-STLEASFSQHLSLVALSVLILRSWVLEG------SG 81 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~-~-~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~------s~ 81 (106)
.=+.+-|||.+++++.++.+ +.+.+||...... - .-.+ ....|.|+||+ +|+.+. -.
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~-----------qF~~~~~ts~k~~~ 385 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDG-----------QFYDTDTTSEKLRV 385 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCc-----------eEEEecCCCccccc
Confidence 34567899999999998876 6788999866554 1 1111 23448999999 776655 34
Q ss_pred CCcEEEEECCCCC--CCcEEEeCC
Q 036317 82 DGSVYAWSARSGK--EPPVIKWAP 103 (106)
Q Consensus 82 d~~i~~wd~~~~~--~v~~i~~sp 103 (106)
|..|+|||+.... ....+.|.|
T Consensus 386 Dn~i~l~~v~g~~~fel~~~~W~p 409 (561)
T COG5354 386 DNSIKLWDVYGAKVFELTNITWDP 409 (561)
T ss_pred CcceEEEEecCchhhhhhhccccC
Confidence 7899999997554 555666665
No 278
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.88 E-value=0.018 Score=44.45 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=39.1
Q ss_pred CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC--------CCcEEEeCCCC
Q 036317 50 HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK--------EPPVIKWAPGS 105 (106)
Q Consensus 50 ~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~--------~v~~i~~sp~~ 105 (106)
...+..++++|+. ..++.|++||+|.+||...+. .+..++|+|+.
T Consensus 259 ~s~v~~ca~sp~E-----------~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~g 311 (545)
T PF11768_consen 259 PSQVICCARSPSE-----------DKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDG 311 (545)
T ss_pred CCcceEEecCccc-----------ceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCC
Confidence 4466789999999 999999999999999998775 78889999873
No 279
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.0024 Score=51.90 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=66.3
Q ss_pred Cceeeec-CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317 2 PFDIFSD-GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWV 76 (106)
Q Consensus 2 ~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i 76 (106)
+|..|+. ..+....++++|+-+.+++++++..|+++++++.+|.. ..|...++.+.=+.|| ...
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dg-----------s~~ 1158 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDG-----------STQ 1158 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCc-----------cee
Confidence 3555555 33345899999999999999999999999999999877 3455556667678888 766
Q ss_pred EEecCCC--cEEEEECCC-CC------CCcEEEeCC
Q 036317 77 LEGSGDG--SVYAWSARS-GK------EPPVIKWAP 103 (106)
Q Consensus 77 ~t~s~d~--~i~~wd~~~-~~------~v~~i~~sp 103 (106)
++.+.-. -..+|++.+ +. .-.+++|+.
T Consensus 1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn 1194 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSN 1194 (1516)
T ss_pred eeeccccCchHHHhccccccCccccccccceeehhh
Confidence 6665433 478898875 22 456666654
No 280
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.84 E-value=0.0048 Score=44.92 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=44.6
Q ss_pred CCCCCeEEEEeC---------CCeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 21 SNDGRLMLLTTL---------EGHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 21 spdg~~l~~~~~---------~~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
|||+++++...+ .+...++|+.+++.. ........+.||||| +.|+... ++.++++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g-----------~~~~~v~-~~nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDG-----------KYIAFVR-DNNLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSS-----------TEEEEEE-TTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCC-----------CeeEEEe-cCceEEE
Confidence 799999988542 356789999998871 123456679999999 8888774 4589998
Q ss_pred ECCCCC
Q 036317 89 SARSGK 94 (106)
Q Consensus 89 d~~~~~ 94 (106)
++.+++
T Consensus 69 ~~~~~~ 74 (353)
T PF00930_consen 69 DLATGQ 74 (353)
T ss_dssp SSTTSE
T ss_pred ECCCCC
Confidence 877664
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.033 Score=40.77 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=51.9
Q ss_pred eeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce------eccC-CCcEEEEEecCCcceeeeeeecccEEEEecC-CCcE
Q 036317 15 ANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL------PVSH-NSTLEASFSQHLSLVALSVLILRSWVLEGSG-DGSV 85 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~------~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~~i 85 (106)
+....|+|||+++++.. ....|.+|+..+|.+ .... ..+..+.|+|++ +++....| +++|
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~-----------k~aY~v~EL~stV 215 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNG-----------KYAYLVNELNSTV 215 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCC-----------cEEEEEeccCCEE
Confidence 78899999999887664 557899999998887 1111 234569999999 88766655 8899
Q ss_pred EEEECCC
Q 036317 86 YAWSARS 92 (106)
Q Consensus 86 ~~wd~~~ 92 (106)
.+|+...
T Consensus 216 ~v~~y~~ 222 (346)
T COG2706 216 DVLEYNP 222 (346)
T ss_pred EEEEEcC
Confidence 9999887
No 282
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.77 E-value=0.011 Score=49.22 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=52.7
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEe---cCCcceeeeeeecccEEE-Eec-C
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFS---QHLSLVALSVLILRSWVL-EGS-G 81 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs---~d~~~~~~~~~~~~~~i~-t~s-~ 81 (106)
+|.|++++.+|.+.++++|+..|.+.+||+.=+.. ..+..++..+..+ |.. ..++ +++ .
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~-----------S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE-----------SVSVSAGSSS 1263 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCC-----------ceEEEecccC
Confidence 57899999999999999999999999999876655 1223344433333 333 3444 444 5
Q ss_pred CCcEEEEECCCCC
Q 036317 82 DGSVYAWSARSGK 94 (106)
Q Consensus 82 d~~i~~wd~~~~~ 94 (106)
.+.|.+|++++|.
T Consensus 1264 ~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGL 1276 (1431)
T ss_pred CCceeeeecccCc
Confidence 7899999999986
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.72 E-value=0.018 Score=41.53 Aligned_cols=68 Identities=25% Similarity=0.372 Sum_probs=52.3
Q ss_pred eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
.-++.|++-|..++++-.++.+.+.+.....+ +.+.-....+.|+-.. ...+.+|++|+.+..|
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~----------pnlvytGgDD~~l~~~ 193 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE----------PNLVYTGGDDGSLSCW 193 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC----------CceEEecCCCceEEEE
Confidence 34778889999999999999999777655554 3344445568888554 2678999999999999
Q ss_pred ECCC
Q 036317 89 SARS 92 (106)
Q Consensus 89 d~~~ 92 (106)
|++.
T Consensus 194 D~R~ 197 (339)
T KOG0280|consen 194 DIRI 197 (339)
T ss_pred EecC
Confidence 9993
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.70 E-value=0.0022 Score=55.16 Aligned_cols=68 Identities=13% Similarity=0.245 Sum_probs=54.7
Q ss_pred CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCceeccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
-|.+.++.+++-|.-+.+++++.+|++++||+...++...-.. +. .. .++++|+..|.++||+
T Consensus 2334 ~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----~~-~~-----------~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----LD-TR-----------EYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----hh-hh-----------heeeccCcccceEEEE
Confidence 4567899999999999999999999999999977776321111 23 34 7899999999999999
Q ss_pred CCCCC
Q 036317 90 ARSGK 94 (106)
Q Consensus 90 ~~~~~ 94 (106)
+..-.
T Consensus 2397 ~s~~~ 2401 (2439)
T KOG1064|consen 2397 LSEFG 2401 (2439)
T ss_pred ccccc
Confidence 97654
No 285
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.69 E-value=0.011 Score=44.45 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=43.8
Q ss_pred eEEEECCCCCeEEEEeC-C--CeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEec-CCC--cEE
Q 036317 16 NEVKLSNDGRLMLLTTL-E--GHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDG--SVY 86 (106)
Q Consensus 16 ~~v~~spdg~~l~~~~~-~--~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~--~i~ 86 (106)
..-+|+|||++++.... + -.|.+.|+..++.+ ...+.-...+|+||| ++|+..+ ..| .|+
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG-----------~~ivf~Sdr~G~p~I~ 309 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDG-----------SKIVFTSDRGGRPQIY 309 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCC-----------CEEEEEeCCCCCcceE
Confidence 35679999999987653 3 35667788776662 222333468999999 7666553 344 566
Q ss_pred EEECCCCC
Q 036317 87 AWSARSGK 94 (106)
Q Consensus 87 ~wd~~~~~ 94 (106)
+.+++.++
T Consensus 310 ~~~~~g~~ 317 (425)
T COG0823 310 LYDLEGSQ 317 (425)
T ss_pred EECCCCCc
Confidence 66665443
No 286
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.01 Score=48.95 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=51.9
Q ss_pred CeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-------eccCCC--cEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 14 DANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNS--TLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 14 ~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~--~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
-|+++.-+. .|..+++|-.||.+++||...... ..+... +..+++-+.| ...|++|+.||
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G----------~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG----------LGELVSGSQDG 1279 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC----------CcceeeeccCC
Confidence 455555443 478899999999999999765433 333333 7788888877 13599999999
Q ss_pred cEEEEECCC
Q 036317 84 SVYAWSARS 92 (106)
Q Consensus 84 ~i~~wd~~~ 92 (106)
.|++||++.
T Consensus 1280 ~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1280 DIQLLDLRM 1288 (1387)
T ss_pred eEEEEeccc
Confidence 999999997
No 287
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.57 E-value=0.013 Score=30.31 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=26.0
Q ss_pred CCeeEEEECCC-C--CeEEEEeCCCeEEEEEcCC
Q 036317 13 SDANEVKLSND-G--RLMLLTTLEGHIHVLHSFQ 43 (106)
Q Consensus 13 ~~v~~v~~spd-g--~~l~~~~~~~~i~l~d~~~ 43 (106)
+.|++++|||+ + +.|+.+-..+.++|+|..+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999985 4 5888888889999999974
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.56 E-value=0.0044 Score=47.29 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=52.5
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC---------
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD--------- 82 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d--------- 82 (106)
++..+.+||-|+++++....+ |.+|+...... ...+..+....|||.+ +|++|=+..
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~V~~~~fSP~~-----------kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPDVKYLDFSPNE-----------KYLVTWSREPIIEPEIEI 101 (561)
T ss_pred chhheeecCcchheehhhccc-eEEccccchhheeeeecCCceecccCccc-----------ceeeeeccCCccChhhcc
Confidence 788999999999888766655 88888765433 4566677889999999 555554332
Q ss_pred ------CcEEEEECCCCC
Q 036317 83 ------GSVYAWSARSGK 94 (106)
Q Consensus 83 ------~~i~~wd~~~~~ 94 (106)
..+.+||..+|+
T Consensus 102 sp~~~~n~~~vwd~~sg~ 119 (561)
T COG5354 102 SPFTSKNNVFVWDIASGM 119 (561)
T ss_pred CCccccCceeEEeccCce
Confidence 259999999998
No 289
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=0.013 Score=44.59 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=58.5
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----------------eccCC--CcEEE-EEecCCcceeeeeee
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------------PVSHN--STLEA-SFSQHLSLVALSVLI 71 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------------~~~~~--~~~~~-~fs~d~~~~~~~~~~ 71 (106)
...|++++|+-+|.-++++-+|-.|+++.-.-+.. ++|.+ .+..+ =|.|..
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs--------- 406 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS--------- 406 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---------
Confidence 34799999997777688888888899985332211 12222 23333 467888
Q ss_pred cccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317 72 LRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 72 ~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp 103 (106)
.||++||.-|.|.+|+-.+++ .|+||.=+|
T Consensus 407 --EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 407 --EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred --ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 999999999999999999988 666765544
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.53 E-value=0.026 Score=46.95 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=52.1
Q ss_pred CeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCcee--c-----------------------cCCCcEEEEEecCCcceee
Q 036317 14 DANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTLP--V-----------------------SHNSTLEASFSQHLSLVAL 67 (106)
Q Consensus 14 ~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~~--~-----------------------~~~~~~~~~fs~d~~~~~~ 67 (106)
..+.++++|||+.++ +-..++.|++||..++... . ....+..++++++|
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG----- 815 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG----- 815 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-----
Confidence 456799999998554 5567799999998765420 0 01134568899999
Q ss_pred eeeecccEEEEecCCCcEEEEECCCCC
Q 036317 68 SVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 68 ~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
+.+++-..++.|++||.+++.
T Consensus 816 ------~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 816 ------QIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred ------cEEEEECCCCEEEEEECCCCe
Confidence 888888899999999998764
No 291
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.011 Score=44.88 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=63.9
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC------Cce-------------eccCCCcEEEEEecCCcceeee
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ------GTL-------------PVSHNSTLEASFSQHLSLVALS 68 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~------~~~-------------~~~~~~~~~~~fs~d~~~~~~~ 68 (106)
..-|.++|..+.++|-+..+++....|.|.-|.+.. .++ +..++.+.++.|+|++
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g------ 213 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG------ 213 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc------
Confidence 345567999999999999999988899999999873 111 2234556779999999
Q ss_pred eeecccEEEEecCCCcEEEEECCCCCCC
Q 036317 69 VLILRSWVLEGSGDGSVYAWSARSGKEP 96 (106)
Q Consensus 69 ~~~~~~~i~t~s~d~~i~~wd~~~~~~v 96 (106)
..+.+-++|..|++++.++|+.+
T Consensus 214 -----~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 214 -----AQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred -----CcccccCcccEEEEEEeccchhh
Confidence 99999999999999999999833
No 292
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.50 E-value=0.004 Score=45.72 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=48.5
Q ss_pred CeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce-------------ecc-------CCCcEEEEEecCCcceeeeeeec
Q 036317 14 DANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL-------------PVS-------HNSTLEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 14 ~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~-------------~~~-------~~~~~~~~fs~d~~~~~~~~~~~ 72 (106)
.|++.+|+|.. +.++=++..|+|++.|.....+ +.. -.++..+.|++.|
T Consensus 215 VITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG---------- 284 (433)
T KOG1354|consen 215 VITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG---------- 284 (433)
T ss_pred HHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC----------
Confidence 57788899974 4555667789999999874332 111 1245568999999
Q ss_pred ccEEEEecCCCcEEEEECC
Q 036317 73 RSWVLEGSGDGSVYAWSAR 91 (106)
Q Consensus 73 ~~~i~t~s~d~~i~~wd~~ 91 (106)
+|+++=+.- +|++||+.
T Consensus 285 -ryilsRDyl-tvk~wD~n 301 (433)
T KOG1354|consen 285 -RYILSRDYL-TVKLWDLN 301 (433)
T ss_pred -cEEEEeccc-eeEEEecc
Confidence 999887665 89999995
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.32 E-value=0.0044 Score=45.49 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=53.1
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEec-CCcceeeeeeecccEEEEecC
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s~ 81 (106)
.++.|-+++|...+..+..++.+|+|..+|+..+.. .-+...++++..=. ++ +++++.+-
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~-----------q~LmaS~M 319 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQ-----------QKLMASDM 319 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhcccc-----------ceEeeccC
Confidence 356888899999899899999999999999976633 11222333322222 34 78889999
Q ss_pred CCcEEEEECCCCC
Q 036317 82 DGSVYAWSARSGK 94 (106)
Q Consensus 82 d~~i~~wd~~~~~ 94 (106)
+|+|++||++--+
T Consensus 320 ~gkikLyD~R~~K 332 (425)
T KOG2695|consen 320 TGKIKLYDLRATK 332 (425)
T ss_pred cCceeEeeehhhh
Confidence 9999999998544
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.021 Score=45.69 Aligned_cols=65 Identities=23% Similarity=0.207 Sum_probs=50.5
Q ss_pred CCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC-------
Q 036317 24 GRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK------- 94 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~------- 94 (106)
+++++.++++|.+++++.. +.. ...+.+ + ..+| .+++++|.||+|.|-.+-+++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~~~~~~~s~----~-~~~G-----------ey~asCS~DGkv~I~sl~~~~~~~~~df 111 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNPKTNFDHSS----S-ILEG-----------EYVASCSDDGKVVIGSLFTDDEITQYDF 111 (846)
T ss_pred cceeeeccccceEEEEecC-Ccccccccccc----c-ccCC-----------ceEEEecCCCcEEEeeccCCccceeEec
Confidence 5788999999999998863 221 111111 1 6689 999999999999999988876
Q ss_pred --CCcEEEeCCCC
Q 036317 95 --EPPVIKWAPGS 105 (106)
Q Consensus 95 --~v~~i~~sp~~ 105 (106)
++.+|+++|+|
T Consensus 112 ~rpiksial~Pd~ 124 (846)
T KOG2066|consen 112 KRPIKSIALHPDF 124 (846)
T ss_pred CCcceeEEeccch
Confidence 89999999986
No 295
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.28 E-value=0.1 Score=32.37 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=42.6
Q ss_pred eeEEEEC---CCC-CeEEEEeCCCeEEEEEcCCCce-eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE----
Q 036317 15 ANEVKLS---NDG-RLMLLTTLEGHIHVLHSFQGTL-PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV---- 85 (106)
Q Consensus 15 v~~v~~s---pdg-~~l~~~~~~~~i~l~d~~~~~~-~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i---- 85 (106)
|+++++. .|| +.|++++.|..|++|+-..-.. ......++.++-...+ + ++.+-++|+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~-----------~-F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGG-----------R-FAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCC-----------E-EEEEecCCEEEEEe
Confidence 4555554 343 5688999999999998653322 2233344444333334 3 4555555554
Q ss_pred ---EEEECCCCCCCcEEEe
Q 036317 86 ---YAWSARSGKEPPVIKW 101 (106)
Q Consensus 86 ---~~wd~~~~~~v~~i~~ 101 (106)
++|.+++...+.++.+
T Consensus 70 ~~~RlWRiKSK~~~~~~~~ 88 (111)
T PF14783_consen 70 RSQRLWRIKSKNQVTSMAF 88 (111)
T ss_pred CcceeeeeccCCCeEEEEE
Confidence 5666666555555543
No 296
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.28 E-value=0.057 Score=37.17 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=49.3
Q ss_pred EEECCCCCeEEEEeCCCeEEEEEcCCCce-----------e-------ccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------P-------VSHNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 18 v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------~-------~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
+.+...+.++++.+.+|.+++||+.+++. . .....+..+.++.+| .-|++-
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-----------~PiV~l 84 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-----------VPIVTL 84 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-----------CEEEEE
Confidence 33667899999999999999999998886 1 123445678888888 766665
Q ss_pred cCCCcEEEEECCCCC
Q 036317 80 SGDGSVYAWSARSGK 94 (106)
Q Consensus 80 s~d~~i~~wd~~~~~ 94 (106)
+ +|..+.|+..-+.
T Consensus 85 s-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 85 S-NGDSYSYSPDLGC 98 (219)
T ss_pred e-CCCEEEeccccce
Confidence 4 5788999887665
No 297
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.1 Score=40.37 Aligned_cols=85 Identities=16% Similarity=0.309 Sum_probs=55.2
Q ss_pred CCCeeEEEECCCCCeEEEEe--CCCeEEEEEcCCCce-eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 12 VSDANEVKLSNDGRLMLLTT--LEGHIHVLHSFQGTL-PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~--~~~~i~l~d~~~~~~-~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
.++|.++.|+|+|+-+++.- +=-.+.|+|..-.-+ ....++-..+-|+|.|.++.++.+.+ .-|.+-+|
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGN--------L~G~mEvw 341 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGN--------LPGDMEVW 341 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCC--------CCCceEEE
Confidence 46999999999997665442 446778888733222 22333334588999993333333222 34899999
Q ss_pred ECCCCC--------CCcEEEeCCC
Q 036317 89 SARSGK--------EPPVIKWAPG 104 (106)
Q Consensus 89 d~~~~~--------~v~~i~~sp~ 104 (106)
|+.+-+ .-.-.+|+|+
T Consensus 342 Dv~n~K~i~~~~a~~tt~~eW~Pd 365 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAANTTVFEWSPD 365 (566)
T ss_pred eccchhhccccccCCceEEEEcCC
Confidence 999866 4455678876
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.046 Score=43.89 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=49.3
Q ss_pred CCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC--------
Q 036317 23 DGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR-------- 91 (106)
Q Consensus 23 dg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~-------- 91 (106)
+|+|+++++.||.+.|-...+.+. ...+.++..++++||- ..-.+ +.+++|+.-| +.++.-.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~-----~~~~s-k~fv~GG~ag-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDF-----SRQQS-KQFVSGGMAG-LVLSERNWLGNKDSV 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccch-----hhhhh-hheeecCcce-EEEehhhhhcCccce
Confidence 499999999999999988877765 2344466789999991 00011 4566676666 6665322
Q ss_pred ---CCC-CCcEEEeCCC
Q 036317 92 ---SGK-EPPVIKWAPG 104 (106)
Q Consensus 92 ---~~~-~v~~i~~sp~ 104 (106)
+++ +|.+++|.-+
T Consensus 155 ~l~~~eG~I~~i~W~g~ 171 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKWRGN 171 (846)
T ss_pred eeecCccceEEEEecCc
Confidence 222 7777777644
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.20 E-value=0.14 Score=35.13 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=53.6
Q ss_pred CeeEEEECCCCCeEE-EEeCCCeEEEEEcCC--Cce-------eccC--CCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 14 DANEVKLSNDGRLML-LTTLEGHIHVLHSFQ--GTL-------PVSH--NSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 14 ~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~--~~~-------~~~~--~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
..+.++|+|||+.|. +-+..+.|..++... .++ .... +.+-.+++..+| +..++.-.
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-----------~l~va~~~ 203 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-----------NLWVADWG 203 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS------------EEEEEET
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-----------CEEEEEcC
Confidence 567999999999775 556788899888752 322 1112 235568999999 87777667
Q ss_pred CCcEEEEECCCCC----------CCcEEEe
Q 036317 82 DGSVYAWSARSGK----------EPPVIKW 101 (106)
Q Consensus 82 d~~i~~wd~~~~~----------~v~~i~~ 101 (106)
.+.|.+++.+ |+ .+.+++|
T Consensus 204 ~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 204 GGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred CCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 7889999887 76 5566666
No 300
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.03 Score=46.28 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=46.9
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----ec---cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV---SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
++|.+++|+.||+.++.|-.+|.|.+||...++. .. ....+..+.+..++ ..++++...|.
T Consensus 131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n-----------S~llt~D~~Gs 198 (1206)
T KOG2079|consen 131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN-----------SKLLTSDTGGS 198 (1206)
T ss_pred CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC-----------cEEEEccCCCc
Confidence 5999999999999999999999999999988776 11 12233445566677 67777777775
No 301
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.026 Score=44.12 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=57.7
Q ss_pred eeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--e----ccCCCcEE--EEEecCCcceeeeeeecccE
Q 036317 4 DIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--P----VSHNSTLE--ASFSQHLSLVALSVLILRSW 75 (106)
Q Consensus 4 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~----~~~~~~~~--~~fs~d~~~~~~~~~~~~~~ 75 (106)
+.|+...|+.+|.++.|=.|-+++++ -|+.+|+||...++. + ..++.... +.=+.+. ..
T Consensus 776 CQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~-----------~i 842 (1034)
T KOG4190|consen 776 CQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDR-----------HI 842 (1034)
T ss_pred eeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcc-----------hh
Confidence 45666677888999999888886655 578899999988876 1 12222222 2223233 43
Q ss_pred EEEe-cCCCcEEEEECCCCCCCcEEEeC
Q 036317 76 VLEG-SGDGSVYAWSARSGKEPPVIKWA 102 (106)
Q Consensus 76 i~t~-s~d~~i~~wd~~~~~~v~~i~~s 102 (106)
+..| +...+|+++|.+++++++.++.+
T Consensus 843 liAgcsaeSTVKl~DaRsce~~~E~kVc 870 (1034)
T KOG4190|consen 843 LIAGCSAESTVKLFDARSCEWTCELKVC 870 (1034)
T ss_pred eeeeccchhhheeeecccccceeeEEec
Confidence 4444 77889999999999866655554
No 302
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.10 E-value=0.018 Score=45.53 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=58.7
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
..+.+....+|++..++|++++++.|.++-+..+.. ..+...+++++|++|+ ..+.+|+
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-----------~k~ysGD 143 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG-----------MKLYSGD 143 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccc-----------cEEeecC
Confidence 345677888899999999999999999987765433 2245578899999999 9999999
Q ss_pred CCCcEEEEECCC
Q 036317 81 GDGSVYAWSARS 92 (106)
Q Consensus 81 ~d~~i~~wd~~~ 92 (106)
.-|+|.+-.+.+
T Consensus 144 ~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 144 SQGKVVLTELDS 155 (726)
T ss_pred CCceEEEEEech
Confidence 999999988887
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.07 E-value=0.17 Score=36.15 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=33.1
Q ss_pred ecCCCCC-CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317 7 SDGGDVS-DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 7 ~~~~~~~-~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~ 46 (106)
++..+.. ..+.++||||+..+|.+...|+|+++|+...++
T Consensus 37 qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l 77 (282)
T PF15492_consen 37 QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL 77 (282)
T ss_pred ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee
Confidence 4444444 688999999999999999999999999986555
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.0067 Score=47.23 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=59.5
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce----------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL----------PVSHNSTLEASFSQHLSLVALSVLILRSWVL 77 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~ 77 (106)
.||...|+.++--.+.+-+++++.|+++++|.++. +.. ..++.++-++.|-.|. ++|+
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-----------r~i~ 800 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-----------RSIA 800 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-----------ceee
Confidence 45666788777767777789999999999999753 211 3456667778888888 8886
Q ss_pred EecCCCcEEEEECCCCCCCcEEEeCC
Q 036317 78 EGSGDGSVYAWSARSGKEPPVIKWAP 103 (106)
Q Consensus 78 t~s~d~~i~~wd~~~~~~v~~i~~sp 103 (106)
++ |+-|.+||---|.....+.+.|
T Consensus 801 Sc--D~giHlWDPFigr~Laq~~dap 824 (1034)
T KOG4190|consen 801 SC--DGGIHLWDPFIGRLLAQMEDAP 824 (1034)
T ss_pred ec--cCcceeecccccchhHhhhcCc
Confidence 65 6789999988777444444444
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=95.95 E-value=0.067 Score=39.71 Aligned_cols=36 Identities=8% Similarity=0.051 Sum_probs=30.0
Q ss_pred eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCC
Q 036317 47 PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSG 93 (106)
Q Consensus 47 ~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~ 93 (106)
.+|-..++.++++||+ ++|+|++.|..|++-.+...
T Consensus 148 lGhvSml~dVavS~D~-----------~~IitaDRDEkIRvs~ypa~ 183 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDD-----------QFIITADRDEKIRVSRYPAT 183 (390)
T ss_pred hhhhhhhheeeecCCC-----------CEEEEecCCceEEEEecCcc
Confidence 3455667789999999 99999999999999877543
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.93 E-value=0.019 Score=41.96 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=49.4
Q ss_pred CeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce-------------e-------ccCCCcEEEEEecCCcceeeeeeec
Q 036317 14 DANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL-------------P-------VSHNSTLEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 14 ~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~-------------~-------~~~~~~~~~~fs~d~~~~~~~~~~~ 72 (106)
.|++.+|+|... .+.-++..|+|++-|.....+ + ....++..+.|++.|
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng---------- 292 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG---------- 292 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC----------
Confidence 567888888744 334456779999999874332 1 112345568999999
Q ss_pred ccEEEEecCCCcEEEEECCCCC
Q 036317 73 RSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 73 ~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
++|++-+.- ++++||....+
T Consensus 293 -ryIlsRdyl-tvkiwDvnm~k 312 (460)
T COG5170 293 -RYILSRDYL-TVKIWDVNMAK 312 (460)
T ss_pred -cEEEEeccc-eEEEEeccccc
Confidence 999887766 89999998655
No 307
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.84 E-value=0.038 Score=28.97 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=27.9
Q ss_pred CcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCC
Q 036317 52 STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKE 95 (106)
Q Consensus 52 ~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~ 95 (106)
.+..++|+|.. ..||.+..+|.|.++.+ +++.
T Consensus 13 ~v~~~~w~P~m-----------dLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCPTM-----------DLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred cEEEEEECCCC-----------CEEEEEECCCeEEEEEC-CCcC
Confidence 45679999999 99999999999999999 5553
No 308
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.037 Score=43.34 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=34.3
Q ss_pred eeecCCCCCCee-EEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317 5 IFSDGGDVSDAN-EVKLSNDGRLMLLTTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 5 ~~~~~~~~~~v~-~v~~spdg~~l~~~~~~~~i~l~d~~~~~~ 46 (106)
.|.+..+.-.++ +++|.|||+.++++-.||+|++.|++++..
T Consensus 54 lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 54 LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 344544444566 999999999999999999999999988765
No 309
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.41 E-value=0.057 Score=47.10 Aligned_cols=89 Identities=11% Similarity=0.216 Sum_probs=54.2
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEE-------------------------
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEA------------------------- 56 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~------------------------- 56 (106)
.|...+. .+|+.+.|+-.|++..++-.||.+-+|.+-..-. +.+.....+.
T Consensus 2245 ~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2245 CFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred EeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcc
Confidence 4555565 7888999999999888888899888887531111 0000000000
Q ss_pred --------EEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 57 --------SFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 57 --------~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
.-.+++.-.-+..++..+.+++|+.+|.|++||++..+
T Consensus 2324 ~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2324 LPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 00111111113344444999999999999999998654
No 310
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.39 E-value=0.21 Score=39.30 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=53.3
Q ss_pred CeeEEEECCCCCeEEEEe------CCC--eEEEEEcCCCce-e-ccCCCcEEEEEecCCcceeeeeeecc-cEEEEecCC
Q 036317 14 DANEVKLSNDGRLMLLTT------LEG--HIHVLHSFQGTL-P-VSHNSTLEASFSQHLSLVALSVLILR-SWVLEGSGD 82 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~------~~~--~i~l~d~~~~~~-~-~~~~~~~~~~fs~d~~~~~~~~~~~~-~~i~t~s~d 82 (106)
.+.+.++||||+.++... .+. .+.+.+. .+.. + .........+|+|||++++...-..+ -++......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 678999999999887766 233 4555554 2222 1 11113556899999965554321111 122222334
Q ss_pred CcEEEEECCCCC-------CCcEEEeCCC
Q 036317 83 GSVYAWSARSGK-------EPPVIKWAPG 104 (106)
Q Consensus 83 ~~i~~wd~~~~~-------~v~~i~~sp~ 104 (106)
+.+++.++..++ .|..++|||+
T Consensus 430 gql~~~~vd~ge~~~~~~g~Issl~wSpD 458 (591)
T PRK13616 430 GQLARTPVDASAVASRVPGPISELQLSRD 458 (591)
T ss_pred ceEEEEeccCchhhhccCCCcCeEEECCC
Confidence 566666776543 6999999996
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.33 E-value=0.095 Score=41.39 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=51.1
Q ss_pred CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce---------------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317 14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL---------------PVSHNSTLEASFSQHLSLVALSVLILRSWVL 77 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~---------------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~ 77 (106)
....+.+||||+++++++ .+.++.++|..+.+. ..--..+....|+++| .-..
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G-----------~ayt 390 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRG-----------NAYT 390 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCC-----------CEEE
Confidence 567899999999998776 589999999877542 0011133567899999 7666
Q ss_pred EecCCCcEEEEECCC
Q 036317 78 EGSGDGSVYAWSARS 92 (106)
Q Consensus 78 t~s~d~~i~~wd~~~ 92 (106)
|-..|..|..|+++.
T Consensus 391 slf~dsqv~kwn~~~ 405 (635)
T PRK02888 391 TLFLDSQIVKWNIEA 405 (635)
T ss_pred eEeecceeEEEehHH
Confidence 667788999999886
No 312
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.31 E-value=0.62 Score=35.23 Aligned_cols=96 Identities=15% Similarity=0.214 Sum_probs=55.5
Q ss_pred eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEe----cCCccee---ee--eeec
Q 036317 6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFS----QHLSLVA---LS--VLIL 72 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs----~d~~~~~---~~--~~~~ 72 (106)
+.+...+-.+.++..+|++++.+++-.-|.|.|+|..++.+ ++..... |.|- +..+.-- -. ....
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcc
Confidence 44444455799999999999888876669999999998877 2222222 2211 1110000 00 0000
Q ss_pred ccEE-EEecCCCcEEEEECCCCCCCcEEEeCC
Q 036317 73 RSWV-LEGSGDGSVYAWSARSGKEPPVIKWAP 103 (106)
Q Consensus 73 ~~~i-~t~s~d~~i~~wd~~~~~~v~~i~~sp 103 (106)
..++ +-.-.-|.|-||++++|..|-.+...+
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k 410 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVGK 410 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEeCC
Confidence 0122 223345789999999998666655543
No 313
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.24 E-value=0.11 Score=37.76 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=21.7
Q ss_pred cEEEEecCCCcEEEEECCCCCCCcEEE
Q 036317 74 SWVLEGSGDGSVYAWSARSGKEPPVIK 100 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~~v~~i~ 100 (106)
..|+.++.+|.++++|.++|+.+..++
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 578888999999999999998444443
No 314
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.063 Score=44.48 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=49.3
Q ss_pred CCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCc
Q 036317 24 GRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPP 97 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~ 97 (106)
+-.++.++..+++...|... ++ ....+++.+++|+.|| +.++.|-.+|-|.+||+..++..+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg-----------~~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDG-----------SLLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCC-----------ceeccccCCCcEEEEEccCCccee
Confidence 44567777777777777533 22 2244677889999999 999999999999999999987444
Q ss_pred EEEe
Q 036317 98 VIKW 101 (106)
Q Consensus 98 ~i~~ 101 (106)
.+.+
T Consensus 167 ~i~e 170 (1206)
T KOG2079|consen 167 VITE 170 (1206)
T ss_pred eeee
Confidence 4433
No 315
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.13 E-value=0.67 Score=32.60 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=46.7
Q ss_pred ecCCCCCCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce----e-ccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 7 SDGGDVSDANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL----P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~----~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
.+.+-..+++.+.|+|+.+.++ +....+.+.-++. +|++ + ...+-...+++.-++ +++++.-
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-----------~~vl~~E 83 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-----------RYVLSEE 83 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-----------EEEEEET
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-----------EEEEEEc
Confidence 4455556899999999866555 5556677777775 5776 1 123445678888888 8888877
Q ss_pred CCCcEEEEECCC
Q 036317 81 GDGSVYAWSARS 92 (106)
Q Consensus 81 ~d~~i~~wd~~~ 92 (106)
.++.+.+.++..
T Consensus 84 r~~~L~~~~~~~ 95 (248)
T PF06977_consen 84 RDQRLYIFTIDD 95 (248)
T ss_dssp TTTEEEEEEE--
T ss_pred CCCcEEEEEEec
Confidence 788888888843
No 316
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.10 E-value=0.18 Score=41.68 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.5
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLH 40 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d 40 (106)
+.|.+++||||++.++.++.++++.+..
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 4899999999999999999998887654
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=95.10 E-value=0.25 Score=40.15 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=57.8
Q ss_pred CCCCCCeeEEEECCCC------------CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeec
Q 036317 9 GGDVSDANEVKLSNDG------------RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg------------~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~ 72 (106)
+-|...|+.+.|.|-. -.++++-..|.|.+||...+.+ ..+..++..+.|-+.. -..
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r-------d~S 124 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR-------DDS 124 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc-------Ccc
Confidence 3455689999998631 1345555669999999887765 3344455556655331 112
Q ss_pred ccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317 73 RSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103 (106)
Q Consensus 73 ~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp 103 (106)
|.+++.-+...++.+|+..+|+ ...|+.+.|
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP 165 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence 3466667777899999999998 445566665
No 318
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.02 E-value=0.34 Score=33.15 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=45.0
Q ss_pred CCeeEEEECCCCCeEEEEeCC--------CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-Eec
Q 036317 13 SDANEVKLSNDGRLMLLTTLE--------GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGS 80 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~--------~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s 80 (106)
...++++++|+|+..++.... +.+..++.. ++. .........++|+||+ +.+. +-+
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg-----------~~lyv~ds 153 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDG-----------KTLYVADS 153 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTS-----------SEEEEEET
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcc-----------hheeeccc
Confidence 478999999999977766544 457777776 555 2223345679999999 7554 555
Q ss_pred CCCcEEEEECC
Q 036317 81 GDGSVYAWSAR 91 (106)
Q Consensus 81 ~d~~i~~wd~~ 91 (106)
..+.|..+++.
T Consensus 154 ~~~~i~~~~~~ 164 (246)
T PF08450_consen 154 FNGRIWRFDLD 164 (246)
T ss_dssp TTTEEEEEEEE
T ss_pred ccceeEEEecc
Confidence 66677777775
No 319
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.01 E-value=0.045 Score=43.99 Aligned_cols=78 Identities=13% Similarity=0.271 Sum_probs=58.0
Q ss_pred eecCCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCcee-----ccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 6 FSDGGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTLP-----VSHNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 6 ~~~~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~~-----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
|-+.+|...|+.+-|.|+.. .+++.+.|-.++.||..+...+ ..+.....+.|+... -.++..
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~-----------p~vlas 176 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD-----------PNVLAS 176 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC-----------cchhhh
Confidence 44567777899999998754 4567789999999999877652 122333458888666 566667
Q ss_pred cCCCcEEEEECCCCC
Q 036317 80 SGDGSVYAWSARSGK 94 (106)
Q Consensus 80 s~d~~i~~wd~~~~~ 94 (106)
+....|++||++.|.
T Consensus 177 shg~~i~vwd~r~gs 191 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGS 191 (1081)
T ss_pred ccCCceEEEeccCCC
Confidence 777799999999887
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.97 E-value=0.11 Score=38.04 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=48.4
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----ec-----------c-CCCc---EEEEEecCCcceeeeeeec
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PV-----------S-HNST---LEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~-----------~-~~~~---~~~~fs~d~~~~~~~~~~~ 72 (106)
+.|+.++|++.|+|+++.. -.++++||..-.+. +. . ...+ -.+.||-|.
T Consensus 281 sSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~---------- 349 (460)
T COG5170 281 SSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD---------- 349 (460)
T ss_pred hhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCc----------
Confidence 4789999999999887754 46899999765443 10 1 1122 248899999
Q ss_pred ccEEEEecCCCcEEEEECC
Q 036317 73 RSWVLEGSGDGSVYAWSAR 91 (106)
Q Consensus 73 ~~~i~t~s~d~~i~~wd~~ 91 (106)
+.+++||+....-++-..
T Consensus 350 -~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 350 -KHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred -ccccccccccceeeeccc
Confidence 999999988877777644
No 321
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.97 E-value=0.19 Score=38.88 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=57.1
Q ss_pred CCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC--
Q 036317 23 DGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK-- 94 (106)
Q Consensus 23 dg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~-- 94 (106)
|-..++.+...|.|.+++...|++ -.+.+.+..+.++.+- ..|-+++.|+.+..|+.++++
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-----------~ciyS~~ad~~v~~~~~~~~~~~ 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-----------GCIYSVGADLKVVYILEKEKVII 137 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-----------CceEecCCceeEEEEecccceee
Confidence 344667888899999999998887 2355667777788888 899999999999999999887
Q ss_pred --------CCcEEEeCCC
Q 036317 95 --------EPPVIKWAPG 104 (106)
Q Consensus 95 --------~v~~i~~sp~ 104 (106)
.+.++..+|+
T Consensus 138 ~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPD 155 (541)
T ss_pred eeeccCCCccceEEEcCC
Confidence 5666777765
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.95 E-value=0.045 Score=44.70 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=56.8
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
.+.++.|+|..-.++.+-.-+.+.+|...+.+. ..+...+..+.|||+| ..++|++.-|.+.+|.
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G-----------~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG-----------TVLMTLDNPGSVHLWR 129 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC-----------CeEEEcCCCceeEEEE
Confidence 456899999988778888889999999877665 3366677789999999 9999999999999998
Q ss_pred CC
Q 036317 90 AR 91 (106)
Q Consensus 90 ~~ 91 (106)
..
T Consensus 130 ~d 131 (1416)
T KOG3617|consen 130 YD 131 (1416)
T ss_pred ee
Confidence 76
No 323
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.80 E-value=0.55 Score=34.09 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCe-------EEEEEcCCC-ce--------eccCCCcEEEEEecCCcceeeeeeeccc
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGH-------IHVLHSFQG-TL--------PVSHNSTLEASFSQHLSLVALSVLILRS 74 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~-------i~l~d~~~~-~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~ 74 (106)
++..|+.++++++|..+...-..+. +.+++.... +. ..-.+++-++++++++ .
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-----------~ 229 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDG-----------R 229 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCC-----------C
Confidence 4458999999999995554433332 222222111 01 2235677889999999 7
Q ss_pred EEEEec-CCCcEEEEECCCCC
Q 036317 75 WVLEGS-GDGSVYAWSARSGK 94 (106)
Q Consensus 75 ~i~t~s-~d~~i~~wd~~~~~ 94 (106)
+|+..| ..+.+.+||..+|+
T Consensus 230 ~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 230 LIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred EEEEECCCCCEEEEEECCCCC
Confidence 775555 46699999999998
No 324
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.78 E-value=0.24 Score=40.03 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=64.1
Q ss_pred ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----ec-cCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317 7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGS 80 (106)
Q Consensus 7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s 80 (106)
.++||...|.-+.|+-..+++-++..+|-|-+|-...|.. .+ .+..+.+.+|..|| ..|...-
T Consensus 66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-----------~kIcIvY 134 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-----------TKICIVY 134 (1189)
T ss_pred hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-----------cEEEEEE
Confidence 3578888999999999999888888999999999988875 22 33345679999999 7777777
Q ss_pred CCCcEEEEECCCC---------CCCcEEEeCCC
Q 036317 81 GDGSVYAWSARSG---------KEPPVIKWAPG 104 (106)
Q Consensus 81 ~d~~i~~wd~~~~---------~~v~~i~~sp~ 104 (106)
+||.|-+=.++.. +...-+.|+|+
T Consensus 135 eDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 135 EDGAVIVGSVDGNRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred ccCCEEEEeeccceecchhcchheccceeeccc
Confidence 7776665544432 24445566664
No 325
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.72 E-value=0.62 Score=37.56 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=52.3
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcC-----CC-----ce---------------eccCCCcEEEEEecCCcceeee
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSF-----QG-----TL---------------PVSHNSTLEASFSQHLSLVALS 68 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~-----~~-----~~---------------~~~~~~~~~~~fs~d~~~~~~~ 68 (106)
+|..+.+||+|++++..+..+ +.|..+- .+ +. .+....+..+.|+|.+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s------ 158 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS------ 158 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC------
Confidence 899999999999999888766 4444431 11 11 0112245578999873
Q ss_pred eeecccEEEEecCCCcEEEEECCCCC-CCcEEEeC
Q 036317 69 VLILRSWVLEGSGDGSVYAWSARSGK-EPPVIKWA 102 (106)
Q Consensus 69 ~~~~~~~i~t~s~d~~i~~wd~~~~~-~v~~i~~s 102 (106)
.....++.=..|+++++||+...+ +...+.++
T Consensus 159 --~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~~ 191 (717)
T PF10168_consen 159 --ESDSHLVVLTSDNTLRLYDISDPQHPWQVLSLS 191 (717)
T ss_pred --CCCCeEEEEecCCEEEEEecCCCCCCeEEEEcc
Confidence 111566666778999999998766 44444444
No 326
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.71 E-value=0.27 Score=36.25 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=45.3
Q ss_pred CeeEEEECCCCCeEEEEe-CC----CeEEEEEcCCCce-ecc--CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317 14 DANEVKLSNDGRLMLLTT-LE----GHIHVLHSFQGTL-PVS--HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~-~~----~~i~l~d~~~~~~-~~~--~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
.+..+.+||||+++|.+. .. -+++++|+.+|+. ... ......+.|.+|++.+.+.-..-............|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 345788999999998663 22 4589999999987 211 111123899999844433322211000001113357
Q ss_pred EEEECCCCC
Q 036317 86 YAWSARSGK 94 (106)
Q Consensus 86 ~~wd~~~~~ 94 (106)
+.|++-+++
T Consensus 205 ~~~~~gt~~ 213 (414)
T PF02897_consen 205 YRHKLGTPQ 213 (414)
T ss_dssp EEEETTS-G
T ss_pred EEEECCCCh
Confidence 777776554
No 327
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=94.70 E-value=0.079 Score=37.79 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=48.5
Q ss_pred CCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce---ec---c-------------------CCCcEE-EEEecCC
Q 036317 10 GDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL---PV---S-------------------HNSTLE-ASFSQHL 62 (106)
Q Consensus 10 ~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~---~~---~-------------------~~~~~~-~~fs~d~ 62 (106)
.|+.+++.+.|+| ++.+|++++.||.+..||+-+.-+ .+ . .....+ .+|.--|
T Consensus 221 ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g 300 (319)
T KOG4714|consen 221 AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLG 300 (319)
T ss_pred HhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccC
Confidence 4567999999998 588999999999999999864322 00 0 000011 2455556
Q ss_pred cceeeeeeecccEEEEecCCCcEEEEE
Q 036317 63 SLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 63 ~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
..+++|+.-+-|++.+
T Consensus 301 -----------~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 301 -----------PCLVCGTDAEAIYLTR 316 (319)
T ss_pred -----------ceEEeccccceEEEec
Confidence 7899999888888875
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.68 E-value=0.26 Score=40.08 Aligned_cols=65 Identities=11% Similarity=0.217 Sum_probs=46.6
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
...++++-+.+|. +|+++.+|.|+|||-...+. ++-..+++.+.-+.|| +||++.+.. .+.++
T Consensus 578 ~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DG-----------kwilaTc~t-yLlLi 644 (794)
T PF08553_consen 578 NNFSCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADG-----------KWILATCKT-YLLLI 644 (794)
T ss_pred CCceEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCC-----------cEEEEeecc-eEEEE
Confidence 3677777778887 99999999999999543333 4445678889999999 666655443 45555
Q ss_pred EC
Q 036317 89 SA 90 (106)
Q Consensus 89 d~ 90 (106)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 54
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.63 E-value=0.36 Score=38.25 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=33.1
Q ss_pred CeEEEEEcCC----C-ce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-CCcEEEEECCCCC
Q 036317 34 GHIHVLHSFQ----G-TL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DGSVYAWSARSGK 94 (106)
Q Consensus 34 ~~i~l~d~~~----~-~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~~i~~wd~~~~~ 94 (106)
+.+.++|..+ + ++ +.. ..+-.+.+|||| ++++.++. +.+|.+.|+++.+
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDG-----------kylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDG-----------KYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECC-CCccceEECCCC-----------CEEEEeCCCCCcEEEEEChhhh
Confidence 5577778776 2 22 211 234458899999 87665554 7899999998754
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.56 E-value=0.081 Score=35.60 Aligned_cols=66 Identities=24% Similarity=0.272 Sum_probs=43.1
Q ss_pred CCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCc
Q 036317 21 SNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPP 97 (106)
Q Consensus 21 spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~ 97 (106)
.+++.++++++.++.+..+|+.+|+. ..........-...++ .++.+..++.++.+|.++|+.+.
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~------------~v~v~~~~~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGG------------RVYVGTSDGSLYALDAKTGKVLW 100 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETT------------EEEEEETTSEEEEEETTTSCEEE
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccc------------ccccccceeeeEecccCCcceee
Confidence 34667788888999999999999987 1112221111122233 44455577799999999998544
Q ss_pred E
Q 036317 98 V 98 (106)
Q Consensus 98 ~ 98 (106)
.
T Consensus 101 ~ 101 (238)
T PF13360_consen 101 S 101 (238)
T ss_dssp E
T ss_pred e
Confidence 4
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.45 E-value=0.18 Score=38.30 Aligned_cols=88 Identities=14% Similarity=0.223 Sum_probs=45.5
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCceeccCCCcEEEEEecCCcceeeee------------------------
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSV------------------------ 69 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~fs~d~~~~~~~~------------------------ 69 (106)
....+.++|+|+++++ +.+++..|+.....+-. ..+.....+|++.+++..+..
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~ 111 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSV 111 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-E
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-ccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCccc
Confidence 4679999999998877 67888888775333321 122233455555544333210
Q ss_pred --eecccEEEEecCCCcEEEEECCCCC--------CCcEEEeCCC
Q 036317 70 --LILRSWVLEGSGDGSVYAWSARSGK--------EPPVIKWAPG 104 (106)
Q Consensus 70 --~~~~~~i~t~s~d~~i~~wd~~~~~--------~v~~i~~sp~ 104 (106)
+.... ++....++.|.+||+++++ .|+.+-|+++
T Consensus 112 ~~If~G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~ 155 (443)
T PF04053_consen 112 EKIFGGN-LLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDD 155 (443)
T ss_dssp EEEE-SS-SEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TT
T ss_pred ceEEcCc-EEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECC
Confidence 11112 2223345589999999998 3577778775
No 332
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.40 E-value=0.26 Score=35.87 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=19.7
Q ss_pred CCCeEEEEeCCCeEEEEEcCCCce
Q 036317 23 DGRLMLLTTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 23 dg~~l~~~~~~~~i~l~d~~~~~~ 46 (106)
++..+++++.++.+.-+|..+|+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~ 87 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKR 87 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcE
Confidence 356688888889999999988887
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.87 E-value=0.59 Score=39.42 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=45.0
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceee
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVAL 67 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~ 67 (106)
++|.++.|--+++-++.+...|.+.+.|..+... ..-.+.+..++||||+.++++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEE
Confidence 5899999999999999999999999999888776 223456778999999955554
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.29 Score=37.40 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=31.7
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~ 46 (106)
++...+++|+|+|..+...+.|..|++++..+|++
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 45788999999999999999999999999998886
No 335
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.64 E-value=1.1 Score=34.60 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=40.9
Q ss_pred CCCCeEEEEeCCCeEEEEEcCC----Cce-----ec--------------c-------CCCcEEEEEec----CCcceee
Q 036317 22 NDGRLMLLTTLEGHIHVLHSFQ----GTL-----PV--------------S-------HNSTLEASFSQ----HLSLVAL 67 (106)
Q Consensus 22 pdg~~l~~~~~~~~i~l~d~~~----~~~-----~~--------------~-------~~~~~~~~fs~----d~~~~~~ 67 (106)
++...++++..||.+....... +.. .. . .+.......++ +.
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 230 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD----- 230 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-----
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-----
Confidence 4777788889999888777543 211 00 0 11122344444 45
Q ss_pred eeeecccEEEEecCCCcEEEEECCCCCCCcE
Q 036317 68 SVLILRSWVLEGSGDGSVYAWSARSGKEPPV 98 (106)
Q Consensus 68 ~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~ 98 (106)
.++++-+.|+++++||+++++.+..
T Consensus 231 ------~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 231 ------TFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp ------TEEEEEETTSEEEEEETTTTCEEEE
T ss_pred ------CEEEEEeCCCeEEEEECCCCeEEEE
Confidence 8999999999999999999985433
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.38 E-value=0.053 Score=42.83 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=60.4
Q ss_pred CceeeecCC-CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEec-CCcceeeeeeecccEE
Q 036317 2 PFDIFSDGG-DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQ-HLSLVALSVLILRSWV 76 (106)
Q Consensus 2 ~~~~~~~~~-~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i 76 (106)
|++.+.+.+ .-...+++.|-.|.+.+++|...+.++++|...... ......+..++.+| .. .|+
T Consensus 143 Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~-----------nY~ 211 (783)
T KOG1008|consen 143 PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSP-----------NYF 211 (783)
T ss_pred CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCC-----------Cce
Confidence 455555544 223667888888889888888888999999864333 22233344466666 45 565
Q ss_pred EEecCCCcEEEEEC-CCCC---------------CCcEEEeCCCC
Q 036317 77 LEGSGDGSVYAWSA-RSGK---------------EPPVIKWAPGS 105 (106)
Q Consensus 77 ~t~s~d~~i~~wd~-~~~~---------------~v~~i~~sp~~ 105 (106)
++- .|+.|.+||. ..-+ .+..++|.|..
T Consensus 212 cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 212 CSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred ecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 554 4889999993 2222 47788888864
No 337
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.28 E-value=1.2 Score=32.29 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=22.5
Q ss_pred CeeEEEECCCCCeEEEE-eCCCeEEEEEcC
Q 036317 14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSF 42 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~ 42 (106)
--+.++|||||+.+..+ +..+.++-++..
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 45789999999877766 455888888764
No 338
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=93.18 E-value=0.91 Score=37.65 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=49.9
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEE----EcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVL----HSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~----d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
.+.|.++++=+|..-+.++..+|.|.++ |..+... -.-...+.+++||||+ ..++-...+++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~-----------Ella~vT~~~~ 143 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDE-----------ELLALVTGEGN 143 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCc-----------CEEEEEeCCCE
Confidence 4589999999999989999999999999 6655555 2233467789999999 66666655665
Q ss_pred EEEE
Q 036317 85 VYAW 88 (106)
Q Consensus 85 i~~w 88 (106)
+.+-
T Consensus 144 l~~m 147 (928)
T PF04762_consen 144 LLLM 147 (928)
T ss_pred EEEE
Confidence 5554
No 339
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.12 E-value=1.3 Score=32.12 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=30.2
Q ss_pred CCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCceec
Q 036317 13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTLPV 48 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~~~ 48 (106)
+-+-+|+++++|..+++++ ..+.+.+||..++++..
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 4688999999999887666 66888999999999843
No 340
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.12 E-value=1.9 Score=30.18 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=49.1
Q ss_pred CeeEEEECCCCCeEEEEe---CCCeEEEEEcCCCceec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 14 DANEVKLSNDGRLMLLTT---LEGHIHVLHSFQGTLPV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~---~~~~i~l~d~~~~~~~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
.+.+.++|+||+.++... ....+.++......... .-......+|++++ ........+....++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g-----------~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDG-----------WVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCC-----------CEEEEEcCCCceEEEE
Confidence 688999999999887766 34455555433222221 22355678999998 6555444444555552
Q ss_pred -CCCCC-------------CCcEEEeCCC
Q 036317 90 -ARSGK-------------EPPVIKWAPG 104 (106)
Q Consensus 90 -~~~~~-------------~v~~i~~sp~ 104 (106)
..+++ .|..+++||+
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpD 122 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSPD 122 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECCC
Confidence 22332 5778888885
No 341
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=92.81 E-value=0.18 Score=41.47 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=46.9
Q ss_pred CCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 22 NDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 22 pdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
.+++++.++...|+|-+-|..+.+. ..|.+.+ ..|+-.|++|+--..+.|++-+. .|..|+|||++..+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si--SDfDv~GNlLitCG~S~R~~~l~--~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI--SDFDVQGNLLITCGYSMRRYNLA--MDPFVKVYDLRMMR 257 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccce--eeeeccCCeEEEeeccccccccc--ccchhhhhhhhhhh
Confidence 4678888999999999999988776 3345554 56787774444333333232222 37889999999876
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.74 E-value=0.63 Score=33.50 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=45.7
Q ss_pred CCeEEEEeCCCeEEEEEcCCCce---eccCCCc-EEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 24 GRLMLLTTLEGHIHVLHSFQGTL---PVSHNST-LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~-~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
|++++.++..+.+++.+..+|.. ....+.+ ..+...+++ ..|.+|+.|++.+.-|.++-.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~-----------glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDG-----------GLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCC-----------ceEEEecCCCcEEEecccccc
Confidence 66788889999999999988865 1111222 246678888 999999999999999988754
No 343
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.70 E-value=0.73 Score=30.89 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=43.1
Q ss_pred CCCeEEEEeCCCeEEEEEcCCCce--e-cc-C----CCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 23 DGRLMLLTTLEGHIHVLHSFQGTL--P-VS-H----NSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 23 dg~~l~~~~~~~~i~l~d~~~~~~--~-~~-~----~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
++..+++.+.++.+..+|..+|+. . .. . ..........++ ..++.+..++.+..+|+++|+
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-----------DRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-----------TEEEEEETCSEEEEEETTTTE
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-----------CEEEEEeccCcEEEEecCCCc
Confidence 344566777888999999999988 2 11 1 111122333336 677777778999999999998
Q ss_pred CCcEE
Q 036317 95 EPPVI 99 (106)
Q Consensus 95 ~v~~i 99 (106)
.+...
T Consensus 144 ~~w~~ 148 (238)
T PF13360_consen 144 LLWKY 148 (238)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44433
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=1.9 Score=31.92 Aligned_cols=68 Identities=12% Similarity=0.226 Sum_probs=50.6
Q ss_pred CeeEEEECCCCCeEEEEeC---CCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CCCcE
Q 036317 14 DANEVKLSNDGRLMLLTTL---EGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDGSV 85 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~---~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~~i 85 (106)
.-..++++|+++++.++.. ++.+.+.|..+++. +... ....+.++|+| .++.... .++.+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P~~~a~~p~g-----------~~vyv~~~~~~~v 184 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TPTGVAVDPDG-----------NKVYVTNSDDNTV 184 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-CcceEEECCCC-----------CeEEEEecCCCeE
Confidence 4568999999988877655 68999999988877 2222 23779999999 7555554 67788
Q ss_pred EEEECCCC
Q 036317 86 YAWSARSG 93 (106)
Q Consensus 86 ~~wd~~~~ 93 (106)
.+.|.+..
T Consensus 185 ~vi~~~~~ 192 (381)
T COG3391 185 SVIDTSGN 192 (381)
T ss_pred EEEeCCCc
Confidence 88886654
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.61 E-value=1.5 Score=37.10 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLH 40 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d 40 (106)
+.|..++||||++.++..+.++++.+-.
T Consensus 110 ~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 110 NGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred CceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 4899999999999999999888886543
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.47 E-value=1 Score=34.09 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=46.1
Q ss_pred CCeeEEEECCCCCeEEEEe---CC-CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCC-
Q 036317 13 SDANEVKLSNDGRLMLLTT---LE-GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDG- 83 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~---~~-~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~- 83 (106)
..+..=+|+|+++.++-.. .. ..+.++|+.+++. -...+......|+||| ++|+ +...|+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG-----------~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDG-----------SKLAFSSSRDGS 261 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCC-----------CEEEEEECCCCC
Confidence 3666778999998765442 22 3588889988776 1222333457999999 5554 344455
Q ss_pred -cEEEEECCCCC
Q 036317 84 -SVYAWSARSGK 94 (106)
Q Consensus 84 -~i~~wd~~~~~ 94 (106)
.|++.|+..++
T Consensus 262 ~~iy~~dl~~~~ 273 (425)
T COG0823 262 PDIYLMDLDGKN 273 (425)
T ss_pred ccEEEEcCCCCc
Confidence 56777777665
No 347
>PRK10115 protease 2; Provisional
Probab=92.47 E-value=1.9 Score=34.56 Aligned_cols=76 Identities=9% Similarity=-0.060 Sum_probs=47.4
Q ss_pred CeeEEEECCCCCeEEEEeCC-----CeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 14 DANEVKLSNDGRLMLLTTLE-----GHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~-----~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
.+..+.+||||++++.+... .++++.|..+|+. ..-...-..++|++|++.+++..... . .-....|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~-~----~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHP-V----TLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecC-C----CCCCCEEE
Confidence 58889999999988876433 4678889988874 11111113589999994444433310 0 01224677
Q ss_pred EEECCCCC
Q 036317 87 AWSARSGK 94 (106)
Q Consensus 87 ~wd~~~~~ 94 (106)
.+++.+++
T Consensus 203 ~h~lgt~~ 210 (686)
T PRK10115 203 RHTIGTPA 210 (686)
T ss_pred EEECCCCh
Confidence 77777763
No 348
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.39 E-value=0.75 Score=37.51 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=54.9
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeee-ecccEEEEecCCCcEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVL-ILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~-~~~~~i~t~s~d~~i~~w 88 (106)
.-++++|+|.|- ++- +....|.+.|..+.+. ..+...+..+.|.|-..--.+-.. .+.-.|++++..|.|.+|
T Consensus 17 N~~A~Dw~~~GL-iAy-gshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSGL-IAY-GSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccce-EEE-ecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 466889999995 333 3456688899988776 335556777888876522222221 244678888999999999
Q ss_pred ECCCCC
Q 036317 89 SARSGK 94 (106)
Q Consensus 89 d~~~~~ 94 (106)
|...+.
T Consensus 95 d~~~~s 100 (1062)
T KOG1912|consen 95 DFVLAS 100 (1062)
T ss_pred Eehhhh
Confidence 998875
No 349
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.39 E-value=0.66 Score=23.88 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=23.8
Q ss_pred CcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCC
Q 036317 52 STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSG 93 (106)
Q Consensus 52 ~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~ 93 (106)
.+..+.|||+. .....++.+-.-+.|.++|++++
T Consensus 2 AvR~~kFsP~~--------~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEP--------GGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCC--------CcccEEEEEccCCeEEEEEcccC
Confidence 35568999877 00026666666789999999964
No 350
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.32 E-value=0.4 Score=38.87 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=51.8
Q ss_pred CeeEEEECCCC--CeEEEEeCCCeEEEEEcCCC--c-e----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 14 DANEVKLSNDG--RLMLLTTLEGHIHVLHSFQG--T-L----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 14 ~v~~v~~spdg--~~l~~~~~~~~i~l~d~~~~--~-~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
.|-+++|||+. .+.++....+.-.+|+...- + + .++...++...|.|+. +..+++++.|-.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~----------pdVlatcsvdt~ 138 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH----------PDVLATCSVDTY 138 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCC----------Ccceeecccccc
Confidence 67889999763 45556666666667876422 1 1 4455567788999887 467889999999
Q ss_pred EEEEECCCCC
Q 036317 85 VYAWSARSGK 94 (106)
Q Consensus 85 i~~wd~~~~~ 94 (106)
+..||+++..
T Consensus 139 vh~wd~rSp~ 148 (1081)
T KOG0309|consen 139 VHAWDMRSPH 148 (1081)
T ss_pred ceeeeccCCC
Confidence 9999999875
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=92.29 E-value=1.8 Score=32.45 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=46.1
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-------------------ccCCCcEEE----------EEe-----
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-------------------VSHNSTLEA----------SFS----- 59 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-------------------~~~~~~~~~----------~fs----- 59 (106)
+|+.+.|+++-.-++++...|++-||-....+.. ...+.++.+ .|.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999777999999999998864322110 000001110 011
Q ss_pred --cCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 60 --QHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 60 --~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
..|+-.|+++. .--|++.|.++|++.|.|++...
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa 118 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA 118 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe
Confidence 12333333332 23699999999999999997554
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.12 E-value=0.94 Score=34.50 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=32.8
Q ss_pred CCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317 24 GRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR 91 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~ 91 (106)
|..++..+. +.+.+||+.++++ .-....+..+.|++++ .+|+-.+++ ++++.+..
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g-----------~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDVSAVKYVIWSDDG-----------ELVALVTKD-SIYILKYN 173 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS-E-EEEEE-TTS-----------SEEEEE-S--SEEEEEE-
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEecCCCcEEEEECCC-----------CEEEEEeCC-eEEEEEec
Confidence 776665554 4899999999988 2233336789999999 777777665 66666544
No 353
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.08 E-value=0.73 Score=22.41 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=14.6
Q ss_pred CCeeEEEECCCCCeEEEEeCC
Q 036317 13 SDANEVKLSNDGRLMLLTTLE 33 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~ 33 (106)
+.-..-.|||||++++-++..
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEEC
T ss_pred ccccCEEEecCCCEEEEEecC
Confidence 356678899999988766544
No 354
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.02 E-value=1.1 Score=35.33 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=34.5
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEE---EEcCCCce---------eccCCCcEEEEEecCC
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHV---LHSFQGTL---------PVSHNSTLEASFSQHL 62 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l---~d~~~~~~---------~~~~~~~~~~~fs~d~ 62 (106)
.+.|.+++|||||+.++... ++++++ .....|.. .........+.|..++
T Consensus 447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~ 508 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD 508 (591)
T ss_pred CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCC
Confidence 34799999999999998877 467776 45445543 1111224668899998
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.99 E-value=4 Score=30.66 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=35.8
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCC
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHL 62 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~ 62 (106)
.+++..+++||+|++++.-..++.+.+....-.+. ......+..+.|.-+.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 35899999999999999999999999887543333 1222344456666444
No 356
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.35 E-value=2.1 Score=31.09 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=55.6
Q ss_pred CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-----ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317 9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-----VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG 83 (106)
Q Consensus 9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~ 83 (106)
.+....++++.|+|+.+.+.+..+.....++=...|++. ........+.+.-++ +|+++--.++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-----------~fvi~dER~~ 150 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-----------QFVIVDERDR 150 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-----------EEEEEehhcc
Confidence 344557999999999999998888887777666678771 112233457778888 8888888888
Q ss_pred cEEEEECCCCC
Q 036317 84 SVYAWSARSGK 94 (106)
Q Consensus 84 ~i~~wd~~~~~ 94 (106)
.+++..+..+.
T Consensus 151 ~l~~~~vd~~t 161 (316)
T COG3204 151 ALYLFTVDADT 161 (316)
T ss_pred eEEEEEEcCCc
Confidence 88888777653
No 357
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.27 E-value=0.95 Score=33.93 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=37.0
Q ss_pred EEECCCCCeEEEEeC---CCeEEEEEcCCCceec---cC-CCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317 18 VKLSNDGRLMLLTTL---EGHIHVLHSFQGTLPV---SH-NSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA 90 (106)
Q Consensus 18 v~~spdg~~l~~~~~---~~~i~l~d~~~~~~~~---~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~ 90 (106)
=.|.+||++|+.++. ..++++.|+.+++..+ .. ........+|++ +.++-...+..++--|+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-----------~~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-----------RALYYVKNGRSLRRVDL 109 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-----------SEEEEEETTTEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-----------CeEEEEECCCeEEEEEC
Confidence 357899999988775 5788889999998811 11 111135567888 76654434457888888
Q ss_pred CCCC
Q 036317 91 RSGK 94 (106)
Q Consensus 91 ~~~~ 94 (106)
++.+
T Consensus 110 ~T~e 113 (386)
T PF14583_consen 110 DTLE 113 (386)
T ss_dssp TT--
T ss_pred CcCc
Confidence 8876
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.26 E-value=0.83 Score=33.27 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=37.5
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----ec---------------c-CCCcEEEEEecCCcceee
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PV---------------S-HNSTLEASFSQHLSLVAL 67 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~---------------~-~~~~~~~~fs~d~~~~~~ 67 (106)
..+....|||||++++... ++.+++.+..++.. .+ . .+.-..+-||||+++||+
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~ 117 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF 117 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEE
Confidence 4788999999999887765 57899998776654 01 0 122244789999999984
No 359
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.05 E-value=3.1 Score=27.33 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=23.5
Q ss_pred CcEEEEEecCCcceeeeeeec-ccEEEEecCCCcEEEEECCC
Q 036317 52 STLEASFSQHLSLVALSVLIL-RSWVLEGSGDGSVYAWSARS 92 (106)
Q Consensus 52 ~~~~~~fs~d~~~~~~~~~~~-~~~i~t~s~d~~i~~wd~~~ 92 (106)
.+..++|||-| +... +-.|+.-..++.+.+|.-..
T Consensus 87 ~vv~~aWSP~G------l~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSG------LGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCC------CCCCCceEEEEEcCCCeEEEEecCC
Confidence 44568888877 2222 24566667788999998773
No 360
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=90.85 E-value=3 Score=31.06 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------------------------------------------
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------------------------------------------- 46 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------------------------------------------- 46 (106)
|..++..+-|+-.-+.+++.+.|+.+..-=.+.++.
T Consensus 113 h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 113 HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 345788888888888888888887664222222211
Q ss_pred -eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 47 -PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 47 -~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
..+.+.+...+|.+.. +.+.+|.+|..+.+||+--.+
T Consensus 193 ~~~h~~~~~~l~Wd~~~-----------~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQ-----------RLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred EcCcccceEEEEEcCCC-----------cEEEeccccCceEEEeccCCc
Confidence 1122333334444444 899999999999999997554
No 361
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.57 E-value=1.4 Score=32.46 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=43.7
Q ss_pred eeEEEECCCCCeEEEEeCC----------CeEEEEEcCCCce--ecc-CCCcEEEEEecCCcceeeeeeeccc-EEEEe-
Q 036317 15 ANEVKLSNDGRLMLLTTLE----------GHIHVLHSFQGTL--PVS-HNSTLEASFSQHLSLVALSVLILRS-WVLEG- 79 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~----------~~i~l~d~~~~~~--~~~-~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~- 79 (106)
..-+++++..+.|.+-.+. .+|.++|..+++. .-. ...+.++..+.|. + .+.+.
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~-----------~P~L~~~~ 308 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDD-----------KPLLYALS 308 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSS-----------S-EEEEEE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCC-----------CcEEEEEc
Confidence 3456776655444433222 3677888888876 111 1234467888888 6 34333
Q ss_pred cCCCcEEEEECCCCCCCcEE
Q 036317 80 SGDGSVYAWSARSGKEPPVI 99 (106)
Q Consensus 80 s~d~~i~~wd~~~~~~v~~i 99 (106)
..++.+.++|..+|+.++.+
T Consensus 309 ~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 309 AGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp TTTTEEEEEETTT--EEEEE
T ss_pred CCCCeEEEEeCcCCcEEeeh
Confidence 45789999999999955544
No 362
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.36 E-value=1.5 Score=32.29 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=20.4
Q ss_pred cEEEEecCCCcEEEEECCCCCCCcE
Q 036317 74 SWVLEGSGDGSVYAWSARSGKEPPV 98 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~~v~~ 98 (106)
.+|+.++.||.+++.|.++|+.+..
T Consensus 336 g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 336 GYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEE
Confidence 5678888999999999999984333
No 363
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.03 E-value=3.4 Score=28.85 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=33.8
Q ss_pred CeeEEEECCCCCeEEEEe---CCCeEEEEEcC---CCce----------eccCCCcEEEEEecCC
Q 036317 14 DANEVKLSNDGRLMLLTT---LEGHIHVLHSF---QGTL----------PVSHNSTLEASFSQHL 62 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~---~~~~i~l~d~~---~~~~----------~~~~~~~~~~~fs~d~ 62 (106)
.|.++.+||||..++... .++++.+=-+. .+.. ......+..+.|.+++
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 899999999999998877 34666654332 3311 1123456789999999
No 364
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.88 E-value=2.1 Score=31.52 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=39.5
Q ss_pred CCeEEEEeCCCeEEEEEcCCCce--ec-cCCCcEE-EEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCC
Q 036317 24 GRLMLLTTLEGHIHVLHSFQGTL--PV-SHNSTLE-ASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEP 96 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~~~~--~~-~~~~~~~-~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v 96 (106)
+..+++++.++.++-+|..+|+. .. ..+.+.. .... ++ .++.+..++.++.+|.++|+.+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~------------~v~v~~~~g~l~ald~~tG~~~ 183 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DG------------LVLVHTSNGMLQALNESDGAVK 183 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CC------------EEEEECCCCEEEEEEccCCCEe
Confidence 45577788889999999999987 21 1111111 1222 33 4555667889999999999833
No 365
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.69 E-value=4.8 Score=32.20 Aligned_cols=65 Identities=9% Similarity=0.113 Sum_probs=46.4
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEE--ecCCcceeeeeeecccEEEEecCCCcE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASF--SQHLSLVALSVLILRSWVLEGSGDGSV 85 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~f--s~d~~~~~~~~~~~~~~i~t~s~d~~i 85 (106)
....-+.-|.-++..++.....++.|||...+.. ....+.+.++.| .||+ +.|++.+-...|
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-----------qsiLaVGf~~~v 98 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-----------QSILAVGFPHHV 98 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-----------CEEEEEEcCcEE
Confidence 3555666667778667767778999999988877 123455666555 4888 888888777777
Q ss_pred EEE
Q 036317 86 YAW 88 (106)
Q Consensus 86 ~~w 88 (106)
.++
T Consensus 99 ~l~ 101 (631)
T PF12234_consen 99 LLY 101 (631)
T ss_pred EEE
Confidence 777
No 366
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.67 E-value=4.6 Score=29.31 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=35.3
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC-ce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG-TL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~-~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
.+.++.+.-++||++++++.......-||.-.. -. .....++..+.|+|++ ...+.+ ..|.++.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-----------~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-----------NLWMLA-RGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS------------EEEEE-TTTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-----------CEEEEe-CCcEEEE
Confidence 457889999999997777755555556664221 11 2344567789999998 544433 5556666
Q ss_pred EE
Q 036317 88 WS 89 (106)
Q Consensus 88 wd 89 (106)
=+
T Consensus 212 s~ 213 (302)
T PF14870_consen 212 SD 213 (302)
T ss_dssp EE
T ss_pred cc
Confidence 55
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.31 E-value=0.66 Score=34.25 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=29.2
Q ss_pred EEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317 55 EASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPG 104 (106)
Q Consensus 55 ~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~ 104 (106)
...+|||++++|+++-.. |++...+++.|+++|+ ....+.|.++
T Consensus 128 ~~~~Spdg~~la~~~s~~------G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d 180 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDG------GSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDD 180 (414)
T ss_dssp EEEETTTSSEEEEEEEET------TSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTT
T ss_pred eeeECCCCCEEEEEecCC------CCceEEEEEEECCCCcCcCCcccccccceEEEeCC
Confidence 578999995555443322 4444579999999998 1223777765
No 368
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.22 E-value=4 Score=31.74 Aligned_cols=55 Identities=11% Similarity=0.219 Sum_probs=39.6
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCccee
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVA 66 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~ 66 (106)
++++|.++.||+|.+.+++.-.+.++.+++-...+. +.....+....|+.. ..+|
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEE
Confidence 457999999999999999999999999998744332 222334566777744 3444
No 369
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.93 E-value=1.7 Score=21.10 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=19.7
Q ss_pred CCCCeEEEEe-CCCeEEEEEcCCCce
Q 036317 22 NDGRLMLLTT-LEGHIHVLHSFQGTL 46 (106)
Q Consensus 22 pdg~~l~~~~-~~~~i~l~d~~~~~~ 46 (106)
|||+++.++. .++++.++|..+++.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 6788777665 578999999977766
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.78 E-value=8.4 Score=28.95 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=29.1
Q ss_pred EECCCCCeEEEEeCCCeEEEEEcCCCceeccCCCcEEEEEecCCccee
Q 036317 19 KLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVA 66 (106)
Q Consensus 19 ~~spdg~~l~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~fs~d~~~~~ 66 (106)
.++.+....+....++.+++.+....+.....+++..++.||+++.+|
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iA 232 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIA 232 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEE
Confidence 455566656666666777755543322222345678899999994444
No 371
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.39 E-value=6.7 Score=28.01 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=49.8
Q ss_pred CeeEEEECCCCCeEE-EEeCCCeEEEEE--cCCCceec-----------cCCC--cEEEEEecCCcceeeeeeecccEEE
Q 036317 14 DANEVKLSNDGRLML-LTTLEGHIHVLH--SFQGTLPV-----------SHNS--TLEASFSQHLSLVALSVLILRSWVL 77 (106)
Q Consensus 14 ~v~~v~~spdg~~l~-~~~~~~~i~l~d--~~~~~~~~-----------~~~~--~~~~~fs~d~~~~~~~~~~~~~~i~ 77 (106)
--+.++|+.|.+.+. +-+.+.+|.-|| ..+|.+.+ ...+ +-..++..+| ...+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-----------~L~V 227 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-----------NLYV 227 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-----------cEEE
Confidence 346789988877664 556777887777 66776611 1111 1123445555 5555
Q ss_pred EecCCCcEEEEECCCCC----------CCcEEEeC
Q 036317 78 EGSGDGSVYAWSARSGK----------EPPVIKWA 102 (106)
Q Consensus 78 t~s~d~~i~~wd~~~~~----------~v~~i~~s 102 (106)
+.-..++|+..|..+|+ .+.|.+|.
T Consensus 228 a~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 228 ATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 55566799999999998 66666663
No 372
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.09 E-value=0.86 Score=31.35 Aligned_cols=21 Identities=33% Similarity=0.805 Sum_probs=19.9
Q ss_pred cEEEEecCCCcEEEEECCCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~ 94 (106)
.++++-..+|.+++||+++++
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k 43 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGK 43 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCe
Confidence 899999999999999999987
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.94 E-value=3.3 Score=30.26 Aligned_cols=44 Identities=25% Similarity=0.266 Sum_probs=30.8
Q ss_pred EECCCCCeEEEEeCC-----CeEEEEEcCCCce-----eccCCCcEEEEEecCC
Q 036317 19 KLSNDGRLMLLTTLE-----GHIHVLHSFQGTL-----PVSHNSTLEASFSQHL 62 (106)
Q Consensus 19 ~~spdg~~l~~~~~~-----~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~ 62 (106)
.|||||++|.++-+| |.|-+||...+-. +.+--.+-.+.+.+||
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG 173 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG 173 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCC
Confidence 599999999887544 7888999875433 2222123358999999
No 374
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.28 E-value=5.9 Score=28.55 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=46.7
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---e-ccCC---CcE--EEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---P-VSHN---STL--EASFSQHLSLVALSVLILRSWVLEGSGDGS 84 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~-~~~~---~~~--~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~ 84 (106)
-+++|...++|.+|+++-.-..|.++|..+|++ . +..+ ... ..++=+|- +++-.+..++.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHda-----------r~~~~~~~~~~ 213 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDA-----------RFLNESNDDGT 213 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCC-----------EEeccCCCCCE
Confidence 588999999999999998999999999999987 1 1101 001 13333555 56655566778
Q ss_pred EEEEEC
Q 036317 85 VYAWSA 90 (106)
Q Consensus 85 i~~wd~ 90 (106)
|.++|=
T Consensus 214 IslFDN 219 (299)
T PF14269_consen 214 ISLFDN 219 (299)
T ss_pred EEEEcC
Confidence 888876
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.07 E-value=7.1 Score=30.35 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=20.5
Q ss_pred cEEEEecCCCcEEEEECCCCCCCcEE
Q 036317 74 SWVLEGSGDGSVYAWSARSGKEPPVI 99 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~~v~~i 99 (106)
..+..++.+|.++.+|.++|+.+...
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCEeEEE
Confidence 45667888999999999999944443
No 376
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.91 E-value=2.3 Score=32.76 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCeeEEEECC----CCCeEEEEeCCCeEEEEEcCCCce
Q 036317 13 SDANEVKLSN----DGRLMLLTTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 13 ~~v~~v~~sp----dg~~l~~~~~~~~i~l~d~~~~~~ 46 (106)
+.+..+++++ +..++++.+.|+++++||+.+++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3567777877 788889999999999999999887
No 377
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.59 E-value=2.8 Score=35.05 Aligned_cols=71 Identities=11% Similarity=0.210 Sum_probs=41.4
Q ss_pred ECCCCCeEEEEeCCCeEEEEEcC-CCce--------eccCCCcEEEEEecCCcceeeeeeecccEEEE-ecCCCcEEEEE
Q 036317 20 LSNDGRLMLLTTLEGHIHVLHSF-QGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE-GSGDGSVYAWS 89 (106)
Q Consensus 20 ~spdg~~l~~~~~~~~i~l~d~~-~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t-~s~d~~i~~wd 89 (106)
+||||+.++.++.||.+.+|.+. +|+. ..+.+....|....+.+-+....... .++++ ...+..+++|.
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w-~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW-VLRITTTDVNREEKFWA 321 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcccee-EEEEecccCCcceeEee
Confidence 89999999999999999988754 3433 22333332232233332222222223 33444 45567889986
Q ss_pred CC
Q 036317 90 AR 91 (106)
Q Consensus 90 ~~ 91 (106)
-.
T Consensus 322 ~a 323 (1283)
T KOG1916|consen 322 EA 323 (1283)
T ss_pred cc
Confidence 54
No 378
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.46 E-value=10 Score=30.09 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=48.9
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEE---------cCCCce---------------eccCCCcEEEEEecCCcceeeee
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLH---------SFQGTL---------------PVSHNSTLEASFSQHLSLVALSV 69 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d---------~~~~~~---------------~~~~~~~~~~~fs~d~~~~~~~~ 69 (106)
+|..+-.|+.|..++.++-+|-+-+.- .++|+. ...+-.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S------- 177 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSS------- 177 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCc-------
Confidence 678889999999999999998765542 233322 0111122357888885
Q ss_pred eecccEEEEecCCCcEEEEECCCCC
Q 036317 70 LILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 70 ~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
.+...++--..|..|++||+....
T Consensus 178 -~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 178 -ILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred -cCCceEEEEecCcEEEEEecCCcc
Confidence 333566666778899999997654
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=85.16 E-value=2.3 Score=29.79 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=40.7
Q ss_pred CCCCeEEEEeCCCeEEEEEcCCCce---eccCC--CcEEEEEecCCcceeeeeeecccEEEEe--cCCCcEEEEECCCCC
Q 036317 22 NDGRLMLLTTLEGHIHVLHSFQGTL---PVSHN--STLEASFSQHLSLVALSVLILRSWVLEG--SGDGSVYAWSARSGK 94 (106)
Q Consensus 22 pdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~--~~~~~~fs~d~~~~~~~~~~~~~~i~t~--s~d~~i~~wd~~~~~ 94 (106)
.++.+..+++.++.|+.|+++..+. .++++ +.....-+..+ ++|+.. |.|..++.|+++.-+
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-----------~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-----------EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCC-----------ceEEeeccccchhhhhcchhhhh
Confidence 3455788889999999999987776 22222 33333334445 666666 777788888877544
No 380
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=84.85 E-value=14 Score=27.41 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=48.9
Q ss_pred eeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce--eccCC-CcEEEEEecCCcceeeeeeecccEEEEecC---CCcEEE
Q 036317 15 ANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL--PVSHN-STLEASFSQHLSLVALSVLILRSWVLEGSG---DGSVYA 87 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~--~~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~---d~~i~~ 87 (106)
-..++++++++.+.... .++.+.+.|..+.+. ....+ .+..+.++|++ +++..+.. ++++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~-----------~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDG-----------KYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCC-----------CEEEEEecccCCceEEE
Confidence 35788999998665554 558999999766665 11111 45568999999 87776655 578888
Q ss_pred EECCCCC
Q 036317 88 WSARSGK 94 (106)
Q Consensus 88 wd~~~~~ 94 (106)
.|-.+++
T Consensus 145 id~~t~~ 151 (381)
T COG3391 145 IDAATNK 151 (381)
T ss_pred EeCCCCe
Confidence 8887766
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=84.32 E-value=12 Score=30.90 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=39.4
Q ss_pred EEEEeCCCeEEEEEcCCC-c-e-e-c-----cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---
Q 036317 27 MLLTTLEGHIHVLHSFQG-T-L-P-V-----SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK--- 94 (106)
Q Consensus 27 l~~~~~~~~i~l~d~~~~-~-~-~-~-----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~--- 94 (106)
-++|-.++.+..||.+-. . + . . ......+++-+.+| +||.||.+|.|+++|- .|+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G------------~iavgs~~G~IRLyd~-~g~~AK 611 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG------------YIAVGSNKGDIRLYDR-LGKRAK 611 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc------------eEEEEeCCCcEEeecc-cchhhh
Confidence 456667788888997642 2 2 0 1 11122234444555 7899999999999994 444
Q ss_pred --------CCcEEEeCC
Q 036317 95 --------EPPVIKWAP 103 (106)
Q Consensus 95 --------~v~~i~~sp 103 (106)
+|..|+.+.
T Consensus 612 T~lp~lG~pI~~iDvt~ 628 (794)
T PF08553_consen 612 TALPGLGDPIIGIDVTA 628 (794)
T ss_pred hcCCCCCCCeeEEEecC
Confidence 666665543
No 382
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.10 E-value=11 Score=27.29 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=30.6
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecC
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQH 61 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d 61 (106)
.-..|+|.|||+ ++++...+.|++++ .++.. .........++++|+
T Consensus 3 ~P~~~a~~pdG~-l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSC-EEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCc-EEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 357899999998 55567799999999 33332 012234567889985
No 383
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.51 E-value=16 Score=27.61 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=31.9
Q ss_pred eeEEEECCCCCeEEEEeCCC----------------eEEEEEcCCCce----e--------cc--CCCcEEEEEecCCcc
Q 036317 15 ANEVKLSNDGRLMLLTTLEG----------------HIHVLHSFQGTL----P--------VS--HNSTLEASFSQHLSL 64 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~~----------------~i~l~d~~~~~~----~--------~~--~~~~~~~~fs~d~~~ 64 (106)
...+--++||+.++-=+.|. .+.+++.+.++. . .. ...-..++|||||
T Consensus 285 ~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDg-- 362 (386)
T PF14583_consen 285 CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDG-- 362 (386)
T ss_dssp EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTS--
T ss_pred eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCC--
Confidence 44556678999665433331 556778777664 0 01 1122458999999
Q ss_pred eeeeeeecccEEEE-ecCCCcEEEEEC
Q 036317 65 VALSVLILRSWVLE-GSGDGSVYAWSA 90 (106)
Q Consensus 65 ~~~~~~~~~~~i~t-~s~d~~i~~wd~ 90 (106)
++|+- +..+|...|+-+
T Consensus 363 ---------k~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 363 ---------KWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------SEEEEEE-TTSS-EEEEE
T ss_pred ---------CEEEEECCCCCCccEEEE
Confidence 76554 445666665543
No 384
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=82.91 E-value=2.4 Score=31.37 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=41.7
Q ss_pred CeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCcEEEe
Q 036317 34 GHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKW 101 (106)
Q Consensus 34 ~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~i~~ 101 (106)
+.++++|..+++. ....+..-.+..|||+|.+..+-..+ ..+.=|-...-|.+||.++-++...|..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~-sR~~rG~RtDvv~~~D~~TL~~~~EI~i 85 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFY-SRGTRGERTDVVEIWDTQTLSPTGEIEI 85 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEE-EETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEE-eccccccceeEEEEEecCcCcccceEec
Confidence 5799999999888 22333444577899996666544444 2222344456899999998764444433
No 385
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.81 E-value=14 Score=26.83 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=45.1
Q ss_pred EECCC-CCeEEEEeCCCeEEEEEcCCCce--ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 19 KLSND-GRLMLLTTLEGHIHVLHSFQGTL--PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 19 ~~spd-g~~l~~~~~~~~i~l~d~~~~~~--~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
..-+| ..+++.+++.+.+.-.|.++|++ .. -..++..-.. --| .+|+-|.+.|.+++-+.++|+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~-vvg-----------dfVV~GCy~g~lYfl~~~tGs 84 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAI-VVG-----------DFVVLGCYSGGLYFLCVKTGS 84 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeE-EEC-----------CEEEEEEccCcEEEEEecchh
Confidence 33344 45667889999999999999988 21 1122221111 156 789999999999999999995
No 386
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=82.55 E-value=15 Score=27.59 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=27.2
Q ss_pred CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317 11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~ 46 (106)
..++|++++.|.=| +++++..+|.+.|.|.+...+
T Consensus 85 ~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPav 119 (395)
T PF08596_consen 85 KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAV 119 (395)
T ss_dssp -S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEE
T ss_pred cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeE
Confidence 37899999998555 688999999999999976665
No 387
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=82.49 E-value=3.9 Score=24.10 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCeeEEEECCCCCeEEEE-eCCCeEEEEEcC
Q 036317 13 SDANEVKLSNDGRLMLLT-TLEGHIHVLHSF 42 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~-~~~~~i~l~d~~ 42 (106)
...+.+.++|+++++.++ ..++.|+++...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 367799999999988655 467899998764
No 388
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=82.05 E-value=2.4 Score=35.27 Aligned_cols=79 Identities=8% Similarity=0.094 Sum_probs=58.8
Q ss_pred CeeEEEECCCCCeEEEEeC----CCeEEEEEcCCCceeccCC---CcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 14 DANEVKLSNDGRLMLLTTL----EGHIHVLHSFQGTLPVSHN---STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~----~~~i~l~d~~~~~~~~~~~---~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
.-+-..|+|..-++++++. .|.+-|+ +.+|+...+-. ...+++|+|.. -.++.|=+-|.+.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~-----------~vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEE-----------FVLAQGWEMGVSD 84 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHH-----------HHHhhccccceeE
Confidence 4445678999888887763 4677775 35677632222 23458999998 8888888899999
Q ss_pred EEECCCCC----------CCcEEEeCCC
Q 036317 87 AWSARSGK----------EPPVIKWAPG 104 (106)
Q Consensus 87 ~wd~~~~~----------~v~~i~~sp~ 104 (106)
+|...+.+ +|..++|||+
T Consensus 85 v~~~~~~e~htv~~th~a~i~~l~wS~~ 112 (1416)
T KOG3617|consen 85 VQKTNTTETHTVVETHPAPIQGLDWSHD 112 (1416)
T ss_pred EEecCCceeeeeccCCCCCceeEEecCC
Confidence 99988765 8999999986
No 389
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.41 E-value=30 Score=28.85 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=40.0
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc--e------eccCCCcEEEEEecCCcc
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT--L------PVSHNSTLEASFSQHLSL 64 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~--~------~~~~~~~~~~~fs~d~~~ 64 (106)
..+++.+++|.+-+.+++|=.+|.|..+...--+ . .....+++++.|-.|++.
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 4589999999999999999999999988543211 1 234567888999888843
No 390
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=80.03 E-value=4.4 Score=18.38 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=16.6
Q ss_pred eeEEEECCCCCeEEEEeCCCeEEE
Q 036317 15 ANEVKLSNDGRLMLLTTLEGHIHV 38 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~~~i~l 38 (106)
...++++++|+.+++=..++.|.+
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 456788888887766666666654
No 391
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.55 E-value=4.7 Score=18.42 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=17.7
Q ss_pred EEEEecCCCcEEEEECCCCCC
Q 036317 75 WVLEGSGDGSVYAWSARSGKE 95 (106)
Q Consensus 75 ~i~t~s~d~~i~~wd~~~~~~ 95 (106)
.+..++.++.++..|.++|+.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcE
Confidence 567788899999999999873
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.38 E-value=16 Score=28.95 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=34.9
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCccee
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVA 66 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~ 66 (106)
..++.+=.-+| ++++++.+|.|+|||-...+. |+--..+..+.-+.|||||+
T Consensus 432 nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil 487 (644)
T KOG2395|consen 432 NFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL 487 (644)
T ss_pred ccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE
Confidence 34455555555 499999999999999732222 44445667788899994444
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=78.33 E-value=19 Score=28.96 Aligned_cols=67 Identities=9% Similarity=0.226 Sum_probs=44.9
Q ss_pred CCCCeeEEEEC--CCCCeEEEEeCCCeEEEEEcCCCc-----e----------eccC-CCcEEEEEecCCcceeeeeeec
Q 036317 11 DVSDANEVKLS--NDGRLMLLTTLEGHIHVLHSFQGT-----L----------PVSH-NSTLEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 11 ~~~~v~~v~~s--pdg~~l~~~~~~~~i~l~d~~~~~-----~----------~~~~-~~~~~~~fs~d~~~~~~~~~~~ 72 (106)
+.+.|.+++|. |||+.+++.+..+.|.++--.... . .... .++.+..|.++|
T Consensus 71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G---------- 140 (631)
T PF12234_consen 71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG---------- 140 (631)
T ss_pred CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC----------
Confidence 35689999995 899999999999999998642111 1 1122 245568899998
Q ss_pred ccEEEEecCCCcEEEEEC
Q 036317 73 RSWVLEGSGDGSVYAWSA 90 (106)
Q Consensus 73 ~~~i~t~s~d~~i~~wd~ 90 (106)
..|++. . ..+.++|-
T Consensus 141 -~LvV~s-G-Nqlfv~dk 155 (631)
T PF12234_consen 141 -TLVVGS-G-NQLFVFDK 155 (631)
T ss_pred -eEEEEe-C-CEEEEECC
Confidence 655443 2 35666654
No 394
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=77.87 E-value=9.5 Score=31.98 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=44.6
Q ss_pred EEECCC-CCeEEEEeCCCeEEEEEcCC-Cce------eccCC-CcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 18 VKLSND-GRLMLLTTLEGHIHVLHSFQ-GTL------PVSHN-STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 18 v~~spd-g~~l~~~~~~~~i~l~d~~~-~~~------~~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
+.|.|. -..+++++..|+..+.|..+ ++. ....+ .+....+|+.+ +.++.|..+|.|.+|
T Consensus 271 lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-----------~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 271 LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-----------DALAFGDHEGHVNLW 339 (1118)
T ss_pred hhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC-----------ceEEEecccCcEeee
Confidence 455554 45688889999999999322 222 11222 36678999999 999999999999999
Q ss_pred E
Q 036317 89 S 89 (106)
Q Consensus 89 d 89 (106)
.
T Consensus 340 a 340 (1118)
T KOG1275|consen 340 A 340 (1118)
T ss_pred c
Confidence 7
No 395
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.40 E-value=12 Score=22.10 Aligned_cols=29 Identities=7% Similarity=-0.114 Sum_probs=18.8
Q ss_pred CeEEEEEcCCCce---eccCCCcEEEEEecCC
Q 036317 34 GHIHVLHSFQGTL---PVSHNSTLEASFSQHL 62 (106)
Q Consensus 34 ~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~ 62 (106)
|.+.-||..+++. ...-..+..+++++|+
T Consensus 37 GRll~ydp~t~~~~vl~~~L~fpNGVals~d~ 68 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGLYFPNGVALSPDE 68 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEEE-TTS
T ss_pred cCEEEEECCCCeEEEehhCCCccCeEEEcCCC
Confidence 5667778877765 2222345678999999
No 396
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=77.37 E-value=17 Score=25.02 Aligned_cols=60 Identities=23% Similarity=0.244 Sum_probs=38.1
Q ss_pred CCCCeEEEEeCCCeEEEEEcCC-Cce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 22 NDGRLMLLTTLEGHIHVLHSFQ-GTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 22 pdg~~l~~~~~~~~i~l~d~~~-~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
..++.++.|+.+| +.+++... ... ......+..+..-|+- +.++.-+ |+.++++++.+-.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~-----------~~llvLs-d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL-----------NLLLVLS-DGQLYVYDLDSLE 67 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc-----------CEEEEEc-CCccEEEEchhhc
Confidence 4578899999888 88888832 222 2223336666666665 5444443 4888888887644
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=76.90 E-value=12 Score=29.89 Aligned_cols=65 Identities=6% Similarity=0.036 Sum_probs=40.2
Q ss_pred EEEECCCCCeEEEEeCCCeEEEEEcCCC--ce---eccCCCcEEEEEecCCcceeeeeeecccEEEEe-cCCCcEEEEEC
Q 036317 17 EVKLSNDGRLMLLTTLEGHIHVLHSFQG--TL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG-SGDGSVYAWSA 90 (106)
Q Consensus 17 ~v~~spdg~~l~~~~~~~~i~l~d~~~~--~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~-s~d~~i~~wd~ 90 (106)
.+-|+|....+++-+.+..--+.++... ++ ....+.+..++|.+|| +.++.+ +..-.-++||-
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG-----------~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG-----------QRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC-----------CEEEEEeCCeEEEEEecC
Confidence 5668888886665555554444554322 22 3355667788999999 554433 34457889986
Q ss_pred CC
Q 036317 91 RS 92 (106)
Q Consensus 91 ~~ 92 (106)
..
T Consensus 186 ~q 187 (671)
T PF15390_consen 186 AQ 187 (671)
T ss_pred ch
Confidence 53
No 398
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=76.36 E-value=25 Score=25.98 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=48.0
Q ss_pred eeEEEECCCCCeEEEEeCCCeEEEEEcCC------Cc-e----e---c--cCCCcEEEEEecCCcceeeee--eecccEE
Q 036317 15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQ------GT-L----P---V--SHNSTLEASFSQHLSLVALSV--LILRSWV 76 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~------~~-~----~---~--~~~~~~~~~fs~d~~~~~~~~--~~~~~~i 76 (106)
-..++++|.+-+.++....+...+||... .+ + + . ....++.++|..... +.+.- ....-.+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~-F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT-FVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc-eEEcCCCcccceeE
Confidence 45799999999999999999999999851 11 1 1 1 234567788876651 11100 0000123
Q ss_pred EEecCCCcEEEEECC
Q 036317 77 LEGSGDGSVYAWSAR 91 (106)
Q Consensus 77 ~t~s~d~~i~~wd~~ 91 (106)
+.++|||+|.-|.-.
T Consensus 104 if~tEdGTisaW~p~ 118 (336)
T TIGR03118 104 LFVTEDGTLSGWAPA 118 (336)
T ss_pred EEEeCCceEEeecCc
Confidence 566789999999743
No 399
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=76.08 E-value=18 Score=26.30 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=30.4
Q ss_pred CCeeEEEECCCCCeEEEEeC-----C------CeEEEEEcCCCce-e---ccCCCcEEEEEecCC
Q 036317 13 SDANEVKLSNDGRLMLLTTL-----E------GHIHVLHSFQGTL-P---VSHNSTLEASFSQHL 62 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~-----~------~~i~l~d~~~~~~-~---~~~~~~~~~~fs~d~ 62 (106)
.+.+.....|+|.+.+.... . +.++.+|. .+.. . .+-.....++||||+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCC
Confidence 37889999999997776555 1 33455554 3333 1 112223458999999
No 400
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=75.68 E-value=19 Score=25.67 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=40.5
Q ss_pred EEEECCCCCeEEEEeCCCeEEEEEcC--CCce----e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317 17 EVKLSNDGRLMLLTTLEGHIHVLHSF--QGTL----P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 17 ~v~~spdg~~l~~~~~~~~i~l~d~~--~~~~----~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd 89 (106)
.+..+..+++++++...+.+.++... ..++ . .....++++.|-+|+ +.++.++.+|.+.++.
T Consensus 132 i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-----------~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 132 ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-----------DTIIVGDKDGNLFVLR 200 (321)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-----------SEEEEEETTSEEEEEE
T ss_pred EEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-----------cEEEEEcCCCeEEEEE
Confidence 33344446688888877778777433 2223 1 122234566777777 8999999999999998
Q ss_pred CC
Q 036317 90 AR 91 (106)
Q Consensus 90 ~~ 91 (106)
..
T Consensus 201 ~~ 202 (321)
T PF03178_consen 201 YN 202 (321)
T ss_dssp E-
T ss_pred EC
Confidence 76
No 401
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.55 E-value=43 Score=29.21 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=47.2
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEE--EEEcCCCce------------------------e-ccCCCcEEEE
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIH--VLHSFQGTL------------------------P-VSHNSTLEAS 57 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~--l~d~~~~~~------------------------~-~~~~~~~~~~ 57 (106)
.|++.-+...|+++....+|+ +..++.|+.++ +|...++-. + .+..++..++
T Consensus 171 ~~~i~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 171 SFKISVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred ceeeecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 355554455899999889999 55556666443 233333322 1 1122344444
Q ss_pred EecCCcceeeeeeecccEEEEecCCCcEEEEECCC-CC
Q 036317 58 FSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARS-GK 94 (106)
Q Consensus 58 fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~-~~ 94 (106)
....- ..+.+=++-++|.+||+.. |.
T Consensus 250 ID~SR-----------~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 250 IDNSR-----------NILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred ecccc-----------ceeeeeccCceEEEEEccCCCc
Confidence 44333 6677778889999999986 54
No 402
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=75.03 E-value=7.5 Score=18.85 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=15.7
Q ss_pred CCCeEEEEeCCCeEEEEEcCC
Q 036317 23 DGRLMLLTTLEGHIHVLHSFQ 43 (106)
Q Consensus 23 dg~~l~~~~~~~~i~l~d~~~ 43 (106)
++..+.+++.++.++.+|..+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 355688999999999999764
No 403
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.41 E-value=8.1 Score=18.66 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=18.2
Q ss_pred EEEecCCCcEEEEECCCCCCCcEE
Q 036317 76 VLEGSGDGSVYAWSARSGKEPPVI 99 (106)
Q Consensus 76 i~t~s~d~~i~~wd~~~~~~v~~i 99 (106)
|..+..+|.++-.|.++|+.+...
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEee
Confidence 344588999999999999844433
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=71.67 E-value=6.6 Score=32.97 Aligned_cols=70 Identities=17% Similarity=0.065 Sum_probs=47.1
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---ecc-----------CCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVS-----------HNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~-----------~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
.|.-+-|-+..-++-.+-.++++++.++.+... ..| .+...-...|||| +.+++.
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-----------tv~a~a 253 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-----------TVFAWA 253 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCC-----------cEEEEe
Confidence 344444455666666777888888877655433 111 2222224689999 999999
Q ss_pred cCCCcEEEEECC-CCC
Q 036317 80 SGDGSVYAWSAR-SGK 94 (106)
Q Consensus 80 s~d~~i~~wd~~-~~~ 94 (106)
+.||.++.|.+. +|+
T Consensus 254 ~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGK 269 (1283)
T ss_pred ecCCccceeeeeeecc
Confidence 999999999887 555
No 405
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=70.60 E-value=15 Score=19.81 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.6
Q ss_pred CeeEEEECCCCCeEEEEeC
Q 036317 14 DANEVKLSNDGRLMLLTTL 32 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~ 32 (106)
++.++++-|||+.++++..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678999999998888754
No 406
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=70.14 E-value=36 Score=25.17 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=45.9
Q ss_pred CCCeEEEEeCCCeEEEEEcCCCce-e--ccCCCcEEEEEecCCcceeeeeeecc-cEEEEe--------cCCCcEEEEEC
Q 036317 23 DGRLMLLTTLEGHIHVLHSFQGTL-P--VSHNSTLEASFSQHLSLVALSVLILR-SWVLEG--------SGDGSVYAWSA 90 (106)
Q Consensus 23 dg~~l~~~~~~~~i~l~d~~~~~~-~--~~~~~~~~~~fs~d~~~~~~~~~~~~-~~i~t~--------s~d~~i~~wd~ 90 (106)
+|+..++-+..+++.-+|..+|+. . .-.+.+..+.|. |.++++++.-.| .-..+| ....=+.+.|+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl 289 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDL 289 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEEC
Confidence 567777777778888888777765 1 122334446666 777777665444 111111 01134788899
Q ss_pred CCCCCCcEEEe
Q 036317 91 RSGKEPPVIKW 101 (106)
Q Consensus 91 ~~~~~v~~i~~ 101 (106)
.+|..+.-++|
T Consensus 290 ~tG~vv~~l~f 300 (335)
T TIGR03032 290 NSGDVVHWLRF 300 (335)
T ss_pred CCCCEEEEEEe
Confidence 99986555555
No 407
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=69.34 E-value=36 Score=26.07 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=39.4
Q ss_pred CCeEEEEeCCCeEEEEEcCCCce--ec--cCC------CcE--EEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317 24 GRLMLLTTLEGHIHVLHSFQGTL--PV--SHN------STL--EASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR 91 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~~~~--~~--~~~------~~~--~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~ 91 (106)
+..+..++.++.++-+|..+|+. .. ... ... .+... ++ ..|+.++.++.|+..|.+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-----------~~V~v~~~~g~v~AlD~~ 128 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-----------RKVFFGTFDGRLVALDAE 128 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC-----------CeEEEecCCCeEEEEECC
Confidence 44567777789999999999987 11 111 000 01111 22 456677789999999999
Q ss_pred CCCCC
Q 036317 92 SGKEP 96 (106)
Q Consensus 92 ~~~~v 96 (106)
+|+.+
T Consensus 129 TG~~~ 133 (488)
T cd00216 129 TGKQV 133 (488)
T ss_pred CCCEe
Confidence 99833
No 408
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=68.96 E-value=45 Score=25.71 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=32.6
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------e-----ccCCCcEEEEEecC
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------P-----VSHNSTLEASFSQH 61 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~-----~~~~~~~~~~fs~d 61 (106)
..-..|+|.|||+.+++--..+.|++++..++.. + ...+....++++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 4677999999998444433369999998655432 1 12344567888877
No 409
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=68.00 E-value=28 Score=24.18 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=32.6
Q ss_pred C-CeEEEEeCCCeEEEEEcCCCce----e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 24 G-RLMLLTTLEGHIHVLHSFQGTL----P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 24 g-~~l~~~~~~~~i~l~d~~~~~~----~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
| +.++++.....|.+|++.+... . .--+.+....++..| .||+|--+
T Consensus 27 g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~G-----------DYlvTlE~ 79 (215)
T PF14761_consen 27 GPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAG-----------DYLVTLEE 79 (215)
T ss_pred CCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecccc-----------ceEEEEEe
Confidence 5 6676668888999999883332 1 122456778999999 78777643
No 410
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=67.99 E-value=22 Score=27.35 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=31.6
Q ss_pred CCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC-----------------CCcEEEeCCCC
Q 036317 51 NSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK-----------------EPPVIKWAPGS 105 (106)
Q Consensus 51 ~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~-----------------~v~~i~~sp~~ 105 (106)
..+..+.|.||| +.+++-...|.|++++-.++. -...|+++|+|
T Consensus 30 ~~Pw~maflPDG-----------~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDN-----------QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCC-----------eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345779999999 877776556888888765442 33677888876
No 411
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=66.44 E-value=57 Score=25.00 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEecCCCcEEEEECCCCCCCc
Q 036317 75 WVLEGSGDGSVYAWSARSGKEPP 97 (106)
Q Consensus 75 ~i~t~s~d~~i~~wd~~~~~~v~ 97 (106)
.++.++.+|.++..|.++|+.+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred EEEEECCCceEEEEECCCCcEee
Confidence 67888899999999999999443
No 412
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=66.33 E-value=29 Score=24.41 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=33.0
Q ss_pred CCeEEEEeCCCeEEEEEcCC-Cce----eccCCCc-EEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 24 GRLMLLTTLEGHIHVLHSFQ-GTL----PVSHNST-LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~-~~~----~~~~~~~-~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
+..+++++.++.+.+|++-. +.. ......+ +.+.-..++ ....++..|+.|+.|+++-++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~-----------~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDS-----------SLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceecccccccc-----------ceeEEeccCCceeeeccccCc
Confidence 45688889999999988641 111 1111111 112222333 466666677777777666554
No 413
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=66.26 E-value=29 Score=27.62 Aligned_cols=56 Identities=7% Similarity=0.079 Sum_probs=39.2
Q ss_pred CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317 24 GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR 91 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~ 91 (106)
.-|+++++..|-|++||-..-+. +.--..+..+.-+.+| ++|++.+++ .+.+-|+.
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~G-----------k~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANG-----------KHILATCKN-YLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCC-----------cEEEEeecc-eEEEEecc
Confidence 45799999999999999654433 3333345667778999 777766655 56666654
No 414
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.19 E-value=30 Score=28.86 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=40.7
Q ss_pred eeEEEECCCCCeEEEEeCCCe-----EEEEEcCCCce-----------------eccCCCcEEEEEecCCcceeeeeeec
Q 036317 15 ANEVKLSNDGRLMLLTTLEGH-----IHVLHSFQGTL-----------------PVSHNSTLEASFSQHLSLVALSVLIL 72 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~~~-----i~l~d~~~~~~-----------------~~~~~~~~~~~fs~d~~~~~~~~~~~ 72 (106)
|..+....+..++++.+.|.+ +++||....+. +....+...++.|.+-
T Consensus 68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l---------- 137 (933)
T KOG2114|consen 68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL---------- 137 (933)
T ss_pred hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc----------
Confidence 333434444467777776654 78999764321 1112233456777777
Q ss_pred ccEEEEecCCCcEEEEE
Q 036317 73 RSWVLEGSGDGSVYAWS 89 (106)
Q Consensus 73 ~~~i~t~s~d~~i~~wd 89 (106)
+.||.|-.||.|..+.
T Consensus 138 -~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 138 -KTIVCGFTNGLVICYK 153 (933)
T ss_pred -cEEEEEecCcEEEEEc
Confidence 8999999999988883
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=65.72 E-value=75 Score=26.12 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=45.4
Q ss_pred CCeeEEEEC--CCCCeEEEEeCCCeEEEEEcCC--Cce---e--ccCCCcEEEEEecCCcceeeeeeeccc-EEEEecCC
Q 036317 13 SDANEVKLS--NDGRLMLLTTLEGHIHVLHSFQ--GTL---P--VSHNSTLEASFSQHLSLVALSVLILRS-WVLEGSGD 82 (106)
Q Consensus 13 ~~v~~v~~s--pdg~~l~~~~~~~~i~l~d~~~--~~~---~--~~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~s~d 82 (106)
..+.++++. ...+.+|++++...|-|+-... .+. + .+..-+-+++|-++. ..--. . +|++++-.
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~----~d~~G--~v~v~a~dI~ 237 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDD----LDPNG--HVKVVATDIS 237 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCC----CCCcc--ceEEEEEecc
Confidence 378899998 8888889999998888775432 222 1 111223345665442 00000 2 78888899
Q ss_pred CcEEEEEC
Q 036317 83 GSVYAWSA 90 (106)
Q Consensus 83 ~~i~~wd~ 90 (106)
|.+.+|++
T Consensus 238 G~v~~~~I 245 (717)
T PF08728_consen 238 GEVWTFKI 245 (717)
T ss_pred CcEEEEEE
Confidence 99988887
No 416
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.18 E-value=13 Score=28.41 Aligned_cols=42 Identities=10% Similarity=-0.032 Sum_probs=32.3
Q ss_pred CCcEEEEEecCCcceeeeeeeccc-EEEEecCCCcEEEEECCCCC---------CCcEEEeCC
Q 036317 51 NSTLEASFSQHLSLVALSVLILRS-WVLEGSGDGSVYAWSARSGK---------EPPVIKWAP 103 (106)
Q Consensus 51 ~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp 103 (106)
..+.+++|||.. + .+..++.+..|+|.|+++.. .+.+.+|.-
T Consensus 194 ~~IrdlafSp~~-----------~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDl 245 (463)
T KOG1645|consen 194 SFIRDLAFSPFN-----------EGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDL 245 (463)
T ss_pred hhhhhhccCccc-----------cceeeeeccCceEEEEecccceeeeheeccCCceeeeecc
Confidence 345568999988 6 67888999999999999865 666666653
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.56 E-value=50 Score=23.72 Aligned_cols=46 Identities=13% Similarity=0.311 Sum_probs=34.5
Q ss_pred eEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecC
Q 036317 16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQH 61 (106)
Q Consensus 16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d 61 (106)
..+..+.+|+..++.-+.+++..+|..+|+. .-....+++|+|.-.
T Consensus 215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 3455667788778878889999999999987 234556778888833
No 418
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=61.86 E-value=59 Score=23.62 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=30.2
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEE-cCCCce------ec-cCCC-cEEEEEecCC
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLH-SFQGTL------PV-SHNS-TLEASFSQHL 62 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d-~~~~~~------~~-~~~~-~~~~~fs~d~ 62 (106)
..+|.++.|+||+...+ .+..+.+++=+ ..+.+. +. ..+. +..++|.+++
T Consensus 186 ~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 186 SRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp SS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 34899999999988555 45889998877 222222 11 1222 5678999887
No 419
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=61.83 E-value=30 Score=29.06 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceee
Q 036317 32 LEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVAL 67 (106)
Q Consensus 32 ~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~ 67 (106)
..+.+.+-|...+.. ..+...+....|||||+.||+
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY 366 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAF 366 (912)
T ss_pred CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEE
Confidence 335777777765544 234456677899999955555
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=61.70 E-value=48 Score=24.34 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=29.6
Q ss_pred CCeeEEEECCCCCeEEEEeCC-------------------CeEEEEEcCCCcee-ccC--CCcEEEEEecCC
Q 036317 13 SDANEVKLSNDGRLMLLTTLE-------------------GHIHVLHSFQGTLP-VSH--NSTLEASFSQHL 62 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~-------------------~~i~l~d~~~~~~~-~~~--~~~~~~~fs~d~ 62 (106)
...+.++|.|||+..++.+.. +.+.-+|..+++.. ... .-...++|+|+|
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G 195 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWG 195 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCC
Confidence 458899999999876655521 33444455444431 111 123458889988
No 421
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=61.59 E-value=48 Score=25.68 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=33.4
Q ss_pred CCCCCeEEEEeCC------CeEEEEEcCCCcee----c---cCCCcEEEEEecCCcceeeeeee---------cccEEEE
Q 036317 21 SNDGRLMLLTTLE------GHIHVLHSFQGTLP----V---SHNSTLEASFSQHLSLVALSVLI---------LRSWVLE 78 (106)
Q Consensus 21 spdg~~l~~~~~~------~~i~l~d~~~~~~~----~---~~~~~~~~~fs~d~~~~~~~~~~---------~~~~i~t 78 (106)
=|+|+.++++..+ +.+.++|.++.++. . ....-...-+.|..+.++.+-.. ...-+..
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 3778777665322 56778888877761 1 11122345566665222210000 0011222
Q ss_pred ecCCCcEEEEECCCCCCCcEEE
Q 036317 79 GSGDGSVYAWSARSGKEPPVIK 100 (106)
Q Consensus 79 ~s~d~~i~~wd~~~~~~v~~i~ 100 (106)
+....++.+||+++.+.++.|.
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEE
T ss_pred ccccCeEEEEECCCCcEeeEEe
Confidence 3346799999999988444443
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.50 E-value=42 Score=27.73 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-e------ccCCCcEEEEEecCC
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-P------VSHNSTLEASFSQHL 62 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-~------~~~~~~~~~~fs~d~ 62 (106)
+++-.+.||.+.+ +++...+|++++++...... . .....+..|.|.+.|
T Consensus 84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred CCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc
Confidence 4888999999988 77778999999999743332 1 122235567777788
No 423
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=60.51 E-value=80 Score=24.67 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=46.3
Q ss_pred eeEEEECCCCCeEEEEeCC-----C-----------eEEEEEcCCCce----ec-cC--------CCcEEEEEecCCcce
Q 036317 15 ANEVKLSNDGRLMLLTTLE-----G-----------HIHVLHSFQGTL----PV-SH--------NSTLEASFSQHLSLV 65 (106)
Q Consensus 15 v~~v~~spdg~~l~~~~~~-----~-----------~i~l~d~~~~~~----~~-~~--------~~~~~~~fs~d~~~~ 65 (106)
-..+.++|.-..+..++.+ + .+.-.|+.||+. +. ++ ....-+....+|
T Consensus 236 W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G--- 312 (527)
T TIGR03075 236 WGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDG--- 312 (527)
T ss_pred cCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCC---
Confidence 3456777766656555422 2 455668889987 11 11 111223333566
Q ss_pred eeeeeecccEEEEecCCCcEEEEECCCCCCCcE
Q 036317 66 ALSVLILRSWVLEGSGDGSVYAWSARSGKEPPV 98 (106)
Q Consensus 66 ~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~ 98 (106)
..++.|+.+.++|.+++.|.++|+.+..
T Consensus 313 -----~~~~~v~~~~K~G~~~vlDr~tG~~i~~ 340 (527)
T TIGR03075 313 -----KPRKLLAHADRNGFFYVLDRTNGKLLSA 340 (527)
T ss_pred -----cEEEEEEEeCCCceEEEEECCCCceecc
Confidence 0013788999999999999999996543
No 424
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=60.25 E-value=53 Score=26.91 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=46.2
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---e----c------------cCC----CcEEEEEecCCcceeeee
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---P----V------------SHN----STLEASFSQHLSLVALSV 69 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~----~------------~~~----~~~~~~fs~d~~~~~~~~ 69 (106)
+.|.++.-..-+.+++.+-.||+|.++|-.+.+. . . .+- ....++|||.+
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~------- 332 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM------- 332 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-------
Confidence 4788888888899999999999999999766543 1 0 000 11236788888
Q ss_pred eecccEEEEecCCCcEE
Q 036317 70 LILRSWVLEGSGDGSVY 86 (106)
Q Consensus 70 ~~~~~~i~t~s~d~~i~ 86 (106)
.-++.-..++.+.
T Consensus 333 ----c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 333 ----CSLVQIDEDGKTK 345 (753)
T ss_pred ----ceEEEEecCCCce
Confidence 8888888888855
No 425
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=58.97 E-value=21 Score=30.30 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=30.3
Q ss_pred CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 50 HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 50 ~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
....+.++|+.+. ++++.|+..|.|+++++.+|.
T Consensus 1101 ~~~fTc~afs~~~-----------~hL~vG~~~Geik~~nv~sG~ 1134 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGT-----------NHLAVGSHAGEIKIFNVSSGS 1134 (1516)
T ss_pred ccceeeEEeecCC-----------ceEEeeeccceEEEEEccCcc
Confidence 3455779999999 999999999999999999997
No 426
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.57 E-value=78 Score=25.29 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=17.0
Q ss_pred cEEEEecCCCcEEEEECCCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~ 94 (106)
-+|+.||.+|.|++||- .|.
T Consensus 442 G~IvvgS~~GdIRLYdr-i~~ 461 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDR-IGR 461 (644)
T ss_pred ceEEEeecCCcEEeehh-hhh
Confidence 48999999999999997 443
No 427
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=57.26 E-value=62 Score=26.34 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=40.1
Q ss_pred CeeEEEECCCCCeEEEEeCC-----CeEEEEEcCCCce-ec-cCCCcEEEEEecCCcceeee
Q 036317 14 DANEVKLSNDGRLMLLTTLE-----GHIHVLHSFQGTL-PV-SHNSTLEASFSQHLSLVALS 68 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~-----~~i~l~d~~~~~~-~~-~~~~~~~~~fs~d~~~~~~~ 68 (106)
.+-.++.|||+++++-+-.. -++++.|+++|+. +. ..+.....+|.+|++.+.+.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt 191 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYT 191 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEE
Confidence 67789999999988866432 4678889999987 22 23334568999999777753
No 428
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=56.55 E-value=37 Score=26.58 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=11.7
Q ss_pred CeeEEEECCCCCeEEEE
Q 036317 14 DANEVKLSNDGRLMLLT 30 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~ 30 (106)
.--.|.|+|+|+.++..
T Consensus 437 sPDNL~~d~~G~LwI~e 453 (524)
T PF05787_consen 437 SPDNLAFDPDGNLWIQE 453 (524)
T ss_pred CCCceEECCCCCEEEEe
Confidence 44578899999954443
No 429
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=56.40 E-value=38 Score=24.16 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=32.9
Q ss_pred CeEEEEeCCCeEEEEEcCCCce--ec--cCCCc---EEEEEe-cCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 25 RLMLLTTLEGHIHVLHSFQGTL--PV--SHNST---LEASFS-QHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 25 ~~l~~~~~~~~i~l~d~~~~~~--~~--~~~~~---~~~~fs-~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
..++.|+.++.+.+.|.+...+ .. ..-++ ..-.|. -|. + |+.+..||.|++-
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdy-----------R-I~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDY-----------R-IVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccce-----------E-EEEEeCCCEEEEE
Confidence 4789999999999999876665 11 11111 122444 454 4 5555688888864
No 430
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=55.44 E-value=69 Score=23.25 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=37.4
Q ss_pred CCeeEEEECC-------CCCeEEEEeCCCeEEEEEcCCC-ce------ec-cCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317 13 SDANEVKLSN-------DGRLMLLTTLEGHIHVLHSFQG-TL------PV-SHNSTLEASFSQHLSLVALSVLILRSWVL 77 (106)
Q Consensus 13 ~~v~~v~~sp-------dg~~l~~~~~~~~i~l~d~~~~-~~------~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~ 77 (106)
..+..+.|-+ .|+++++.-..+.|......++ .+ .. ....+..+.+.||| ...+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG-----------~Lyv 321 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG-----------ALYV 321 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS-----------EEEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC-----------eEEE
Confidence 4566666653 3455555555677877777644 22 11 22367789999999 7777
Q ss_pred EecCCCcEE
Q 036317 78 EGSGDGSVY 86 (106)
Q Consensus 78 t~s~d~~i~ 86 (106)
+-+.+|.|+
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 777787775
No 431
>PRK10115 protease 2; Provisional
Probab=53.77 E-value=28 Score=28.06 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=29.0
Q ss_pred EEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC----C----CcEEEeCCC
Q 036317 54 LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----E----PPVIKWAPG 104 (106)
Q Consensus 54 ~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----~----v~~i~~sp~ 104 (106)
....+|||+++||++.- ..|++...+++-|+.+|+ . -..+.|+|+
T Consensus 130 ~~~~~Spdg~~la~~~d------~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D 182 (686)
T PRK10115 130 GGMAITPDNTIMALAED------FLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWAND 182 (686)
T ss_pred eEEEECCCCCEEEEEec------CCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeC
Confidence 45789999955555421 134555689999998887 1 135777654
No 432
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=53.56 E-value=6.4 Score=17.44 Aligned_cols=7 Identities=71% Similarity=1.108 Sum_probs=5.2
Q ss_pred ECCCCCe
Q 036317 20 LSNDGRL 26 (106)
Q Consensus 20 ~spdg~~ 26 (106)
|||+|+.
T Consensus 8 FSp~Grl 14 (23)
T PF10584_consen 8 FSPDGRL 14 (23)
T ss_dssp BBTTSSB
T ss_pred ECCCCeE
Confidence 7888873
No 433
>PF13983 YsaB: YsaB-like lipoprotein
Probab=52.90 E-value=20 Score=20.42 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=14.9
Q ss_pred eeecCCCCC--CeeEEEECCCCCeEE
Q 036317 5 IFSDGGDVS--DANEVKLSNDGRLML 28 (106)
Q Consensus 5 ~~~~~~~~~--~v~~v~~spdg~~l~ 28 (106)
+|++.|... +-.-++|+|||++|-
T Consensus 48 SYEm~G~T~r~E~FvCSFD~dGqFLH 73 (77)
T PF13983_consen 48 SYEMRGYTARKEGFVCSFDADGQFLH 73 (77)
T ss_pred ceEeecccccccceEEeECCCCcEEE
Confidence 355555543 455677888888763
No 434
>PRK13684 Ycf48-like protein; Provisional
Probab=52.31 E-value=89 Score=22.72 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=28.3
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEE-EcCCCc-e----eccCCCcEEEEEecCC
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVL-HSFQGT-L----PVSHNSTLEASFSQHL 62 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~-d~~~~~-~----~~~~~~~~~~~fs~d~ 62 (106)
+.+..+.+.|++.+++ .+..|.+..- |. .++ . ......+..+.+.+++
T Consensus 173 g~~~~i~~~~~g~~v~-~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g 226 (334)
T PRK13684 173 GVVRNLRRSPDGKYVA-VSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDG 226 (334)
T ss_pred ceEEEEEECCCCeEEE-EeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCC
Confidence 4688999999987554 4455555432 21 122 1 1223345667888888
No 435
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=52.07 E-value=81 Score=22.19 Aligned_cols=69 Identities=10% Similarity=0.174 Sum_probs=39.0
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc--e------------e-ccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT--L------------P-VSHNSTLEASFSQHLSLVALSVLILRSWV 76 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~--~------------~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i 76 (106)
.+....+++-.++.++++.-.++.+.++++.... . . ........++|+|.+ +.+
T Consensus 64 ~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-----------~~L 132 (248)
T PF06977_consen 64 FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-----------NRL 132 (248)
T ss_dssp -SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-----------TEE
T ss_pred CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-----------CEE
Confidence 3467788888888776666567888888873321 1 1 122345679999987 555
Q ss_pred EEecCCCcEEEEECC
Q 036317 77 LEGSGDGSVYAWSAR 91 (106)
Q Consensus 77 ~t~s~d~~i~~wd~~ 91 (106)
+.+-+.....++.+.
T Consensus 133 ~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 133 FVAKERKPKRLYEVN 147 (248)
T ss_dssp EEEEESSSEEEEEEE
T ss_pred EEEeCCCChhhEEEc
Confidence 555455555555544
No 436
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=50.95 E-value=1.4e+02 Score=24.53 Aligned_cols=77 Identities=10% Similarity=-0.030 Sum_probs=47.6
Q ss_pred CeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce---------eccCCCcEEEEEec--CCcceeeeeeecccEEEEecC
Q 036317 14 DANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL---------PVSHNSTLEASFSQ--HLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 14 ~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~---------~~~~~~~~~~~fs~--d~~~~~~~~~~~~~~i~t~s~ 81 (106)
+..+|+|+|. .+.+|+.-..|.-.|||+..... ....+.+ .+.+ ...|-.+.|......++..+.
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi---~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI---IFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc---cCCCcccCcceeeEecCCCCEEEEEcC
Confidence 7889999984 55688889999999999922211 1111222 1111 133445555544477776655
Q ss_pred CCcEEEEECCCCC
Q 036317 82 DGSVYAWSARSGK 94 (106)
Q Consensus 82 d~~i~~wd~~~~~ 94 (106)
. .+.++|+++..
T Consensus 224 ~-~l~~~d~~~~~ 235 (765)
T PF10214_consen 224 S-KLMLIDFESNW 235 (765)
T ss_pred C-ceEEEECCCCC
Confidence 4 68888888765
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.49 E-value=46 Score=27.21 Aligned_cols=33 Identities=6% Similarity=0.083 Sum_probs=28.2
Q ss_pred CCeeEEEECCC---CCeEEEEeCCCeEEEEEcCCCc
Q 036317 13 SDANEVKLSND---GRLMLLTTLEGHIHVLHSFQGT 45 (106)
Q Consensus 13 ~~v~~v~~spd---g~~l~~~~~~~~i~l~d~~~~~ 45 (106)
..|..+.|+|. +.++++-+.|+.+++||+...+
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 48899999997 5889999999999999986543
No 438
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=49.26 E-value=1.1e+02 Score=25.38 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=22.3
Q ss_pred EEEEecCCCcEEEEECCCCCCCcEEEe
Q 036317 75 WVLEGSGDGSVYAWSARSGKEPPVIKW 101 (106)
Q Consensus 75 ~i~t~s~d~~i~~wd~~~~~~v~~i~~ 101 (106)
.|+.+.++|.+++.|.++|+.+..+.+
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEeecee
Confidence 789999999999999999994444433
No 439
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.22 E-value=38 Score=29.41 Aligned_cols=67 Identities=12% Similarity=-0.011 Sum_probs=42.3
Q ss_pred CeeEEEECCCCCe-EEEEeCCCeEEEEEcCCCce---e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 14 DANEVKLSNDGRL-MLLTTLEGHIHVLHSFQGTL---P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 14 ~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~~~---~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
-...+.|.|.=.. .++...|..|++.-+..-.. . ......++++|+|.| +.++.|..+|++..|
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprG-----------KQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRG-----------KQLFIGRNNGTEVQY 225 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecccc-----------ceeeEecCCCeEEEe
Confidence 4456777765322 24445566666544321111 1 123456789999999 999999999999888
Q ss_pred ECC
Q 036317 89 SAR 91 (106)
Q Consensus 89 d~~ 91 (106)
.-.
T Consensus 226 ~P~ 228 (1405)
T KOG3630|consen 226 EPS 228 (1405)
T ss_pred ecc
Confidence 654
No 440
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=48.93 E-value=70 Score=20.54 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=28.1
Q ss_pred cEEEEecCCCcEEEEECCCCCCCcEEEeCCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGKEPPVIKWAPGS 105 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~~v~~i~~sp~~ 105 (106)
-+-++--+||.+.+-|-.||+.+--.+|.|+.
T Consensus 96 Pf~L~r~~dGrltL~Dp~Tg~~i~L~aFG~dN 127 (135)
T TIGR03054 96 PFRLTRYDNGRLTLTDPATGWSIELNAFGADN 127 (135)
T ss_pred CEEEEEEeCCcEEEEcCCCCcEEEEeecCCch
Confidence 67788889999999999999999888888763
No 441
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.76 E-value=84 Score=23.25 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=24.1
Q ss_pred CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce
Q 036317 14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL 46 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~ 46 (106)
-|-+++.+.+...++.++ ..+..-+||..+|.+
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 456788887666666555 455667999999998
No 442
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=48.14 E-value=11 Score=22.90 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=13.7
Q ss_pred CCcEEEEEecCCcceeeee
Q 036317 51 NSTLEASFSQHLSLVALSV 69 (106)
Q Consensus 51 ~~~~~~~fs~d~~~~~~~~ 69 (106)
+....-.|||||||++|..
T Consensus 13 Gv~AAGefs~DGkLv~Ykg 31 (109)
T COG4831 13 GVMAAGEFSPDGKLVEYKG 31 (109)
T ss_pred ceeEeceeCCCCceEEeeC
Confidence 3344457999999999754
No 443
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=47.16 E-value=1.1e+02 Score=26.05 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--e-ccCCCcEEEEEecCC
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--P-VSHNSTLEASFSQHL 62 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~-~~~~~~~~~~fs~d~ 62 (106)
+.-+.+++-+|.|+-++.+..|+.+.+++....+. . ....+...+.|...|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg 67 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG 67 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc
Confidence 34678888899999999999999999999765554 1 112233446777666
No 444
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=47.06 E-value=68 Score=19.87 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=39.0
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-eccCCCcEE-EEEecC--CcceeeeeeecccEEEEecCCCcEE
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-PVSHNSTLE-ASFSQH--LSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-~~~~~~~~~-~~fs~d--~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
.+.|..+.-...++ ++-+..+|+|-+|+-....- ..++..+.+ ..|..+ | -..|++|-.+|.|-
T Consensus 42 ~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~~RlWRiKSK~~~~~~~~~D~~gdG----------~~eLI~GwsnGkve 109 (111)
T PF14783_consen 42 TDKVTSLCSLGGGR-FAYALANGTVGVYDRSQRLWRIKSKNQVTSMAFYDINGDG----------VPELIVGWSNGKVE 109 (111)
T ss_pred ccceEEEEEcCCCE-EEEEecCCEEEEEeCcceeeeeccCCCeEEEEEEcCCCCC----------ceEEEEEecCCeEE
Confidence 45777777777755 77888999999998644333 223333444 333333 3 13577787777663
No 445
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=46.22 E-value=6.1 Score=31.78 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=47.8
Q ss_pred CCCCeeEEEECCC-CCeEEEEe----CCCeEEEEEcCCCc--e------ecc-CCCcEEEEEecCCcceeeeeeecccEE
Q 036317 11 DVSDANEVKLSND-GRLMLLTT----LEGHIHVLHSFQGT--L------PVS-HNSTLEASFSQHLSLVALSVLILRSWV 76 (106)
Q Consensus 11 ~~~~v~~v~~spd-g~~l~~~~----~~~~i~l~d~~~~~--~------~~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i 76 (106)
+....++++|++- -+++|++- .|..+.|||..++- . ... -..+..++|-.|. +.|
T Consensus 101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-----------klv 169 (783)
T KOG1008|consen 101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-----------KLV 169 (783)
T ss_pred ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc-----------chh
Confidence 3347889999875 45555553 34567899987762 2 110 1122346777788 899
Q ss_pred EEecCCCcEEEEECC
Q 036317 77 LEGSGDGSVYAWSAR 91 (106)
Q Consensus 77 ~t~s~d~~i~~wd~~ 91 (106)
++|...+.++++|++
T Consensus 170 laGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 170 LAGMTSRSVHIFDLR 184 (783)
T ss_pred hcccccchhhhhhhh
Confidence 999999999999998
No 446
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=46.13 E-value=1.2e+02 Score=22.29 Aligned_cols=48 Identities=15% Similarity=0.067 Sum_probs=25.8
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEE-EcCC-C----ce-------ec----cCCCcEEEEEecCCcc
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVL-HSFQ-G----TL-------PV----SHNSTLEASFSQHLSL 64 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~-d~~~-~----~~-------~~----~~~~~~~~~fs~d~~~ 64 (106)
..+.+++.++| ++++... .+..+ |... + +. .. .+.....+.|.|||++
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L 137 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL 137 (367)
T ss_pred CccceeEecCC--EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE
Confidence 45788888988 4444433 45434 4321 1 21 11 1223446899999943
No 447
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=45.64 E-value=21 Score=22.43 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=17.7
Q ss_pred EEECCCCCeEEEEeCCCeEEEEE
Q 036317 18 VKLSNDGRLMLLTTLEGHIHVLH 40 (106)
Q Consensus 18 v~~spdg~~l~~~~~~~~i~l~d 40 (106)
=.|||||+++-.+-+|.-++=.|
T Consensus 73 HvfSpDG~~lSFTYNDhVmhe~d 95 (122)
T PF12566_consen 73 HVFSPDGSWLSFTYNDHVMHELD 95 (122)
T ss_pred eEECCCCCEEEEEecchhhcccc
Confidence 35999999888888887766444
No 448
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=45.05 E-value=1.1e+02 Score=21.72 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=36.1
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc-e-e--ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT-L-P--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW 88 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~-~-~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w 88 (106)
+.|.++.-- .|+ +++ +.++.+.+++....+ + + .........+....+ .+|+.|+.-..+.++
T Consensus 89 g~V~ai~~~-~~~-lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~-----------~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 89 GPVTAICSF-NGR-LVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK-----------NYILVGDAMKSVSLL 154 (321)
T ss_dssp S-EEEEEEE-TTE-EEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET-----------TEEEEEESSSSEEEE
T ss_pred CcceEhhhh-CCE-EEE-eecCEEEEEEccCcccchhhheecceEEEEEEeccc-----------cEEEEEEcccCEEEE
Confidence 456665554 333 443 345889999987666 4 1 111111223334445 788888877777777
Q ss_pred ECC
Q 036317 89 SAR 91 (106)
Q Consensus 89 d~~ 91 (106)
..+
T Consensus 155 ~~~ 157 (321)
T PF03178_consen 155 RYD 157 (321)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 449
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.35 E-value=1e+02 Score=25.79 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=31.3
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~ 46 (106)
...++.+.+++..+++++++..+-+.=.++.+|+.
T Consensus 35 ~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei 69 (910)
T KOG2103|consen 35 VKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEI 69 (910)
T ss_pred ceeEEEEeecCCCceEEEEeccchhheecccCCcE
Confidence 34788999999999999999999998889999988
No 450
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=44.29 E-value=93 Score=25.16 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=34.7
Q ss_pred EEEECCCCCeEEEEeCC-CeEEEEEcCCCce-------eccCCCcEEEEEecCCccee
Q 036317 17 EVKLSNDGRLMLLTTLE-GHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVA 66 (106)
Q Consensus 17 ~v~~spdg~~l~~~~~~-~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~ 66 (106)
-++|+|..+.++++++. +.|.||.+..-.+ .....++..++|=-|.-+|+
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLi 400 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLI 400 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEE
Confidence 57999999999988876 6677887655433 12344566788887765555
No 451
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.88 E-value=1.7e+02 Score=23.23 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=42.3
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcC--CCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSF--QGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~--~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
+.+.+=|+..++.+.+... +.+.=|-.. ...+ ....+.+.++.||+|. +.++.-..+.+|.
T Consensus 24 esngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-----------kilAVQR~~~~v~ 91 (657)
T KOG2377|consen 24 ESNGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-----------KILAVQRTSKTVD 91 (657)
T ss_pred cccceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-----------ceEEEEecCceEE
Confidence 5566667666665544443 333333332 2222 3356788899999999 8888777888888
Q ss_pred EEECC
Q 036317 87 AWSAR 91 (106)
Q Consensus 87 ~wd~~ 91 (106)
+++..
T Consensus 92 f~nf~ 96 (657)
T KOG2377|consen 92 FCNFI 96 (657)
T ss_pred EEecC
Confidence 88773
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.96 E-value=1.1e+02 Score=24.53 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=8.4
Q ss_pred CCcEEEeCCCC
Q 036317 95 EPPVIKWAPGS 105 (106)
Q Consensus 95 ~v~~i~~sp~~ 105 (106)
.+...+|+|.+
T Consensus 167 tl~Qa~WHP~S 177 (741)
T KOG4460|consen 167 TLKQAAWHPSS 177 (741)
T ss_pred eeeeccccCCc
Confidence 66777888876
No 453
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=41.28 E-value=58 Score=24.83 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=24.8
Q ss_pred EEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 54 LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 54 ~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
..+..+|++ ++.+..+.=|.|.++|+.++.
T Consensus 311 ~~i~~sP~~-----------~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 311 ESICLSPSG-----------RLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred EEEEECCCC-----------CEEEEEcCCCcEEEEECCCCh
Confidence 446777777 888888777899999999887
No 454
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=41.12 E-value=40 Score=15.44 Aligned_cols=24 Identities=8% Similarity=0.308 Sum_probs=16.9
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVL 39 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~ 39 (106)
+|.+++.++ .++++++..+.+++|
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEec
Confidence 455666555 468888888888886
No 455
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=40.49 E-value=1.4e+02 Score=21.68 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=39.1
Q ss_pred ECCCCCeEEEEeCCCeEEEEEcCCCce--e--cc--CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCC
Q 036317 20 LSNDGRLMLLTTLEGHIHVLHSFQGTL--P--VS--HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSG 93 (106)
Q Consensus 20 ~spdg~~l~~~~~~~~i~l~d~~~~~~--~--~~--~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~ 93 (106)
..-||+ +.++..++.+.-+|..+++. . .. ...+..-.+..+| + |..++.++.++..|.++|
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-----------~-i~~g~~~g~~y~ld~~~G 131 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-----------K-IYVGSWDGKLYALDASTG 131 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-----------e-EEEecccceEEEEECCCC
Confidence 334555 55557778888888888885 1 11 0111122233377 5 778888889999999888
Q ss_pred C
Q 036317 94 K 94 (106)
Q Consensus 94 ~ 94 (106)
+
T Consensus 132 ~ 132 (370)
T COG1520 132 T 132 (370)
T ss_pred c
Confidence 7
No 456
>PHA02713 hypothetical protein; Provisional
Probab=40.48 E-value=73 Score=24.99 Aligned_cols=21 Identities=0% Similarity=-0.080 Sum_probs=16.7
Q ss_pred cEEEEecCCC--cEEEEECCCCC
Q 036317 74 SWVLEGSGDG--SVYAWSARSGK 94 (106)
Q Consensus 74 ~~i~t~s~d~--~i~~wd~~~~~ 94 (106)
+..+.|+.++ ++..+|.++.+
T Consensus 514 ~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 514 TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEEEEeeecceeehhhcCccccc
Confidence 6677787777 78888888877
No 457
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=39.84 E-value=2.2e+02 Score=23.64 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=42.5
Q ss_pred CCeEEEEeCCCeEEEEEcCCCce--ec---cC-C------CcEEEEEecC--Ccc---eeeeeeecccEEEEecCCCcEE
Q 036317 24 GRLMLLTTLEGHIHVLHSFQGTL--PV---SH-N------STLEASFSQH--LSL---VALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~~~~--~~---~~-~------~~~~~~fs~d--~~~---~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
+..+..++.++.+.-+|..+|+. .. .. . .+..+++..+ +.. ..-+-..+...|..+..|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777788888889999987 11 00 0 0111333211 100 0000112335777888899999
Q ss_pred EEECCCCCCC
Q 036317 87 AWSARSGKEP 96 (106)
Q Consensus 87 ~wd~~~~~~v 96 (106)
-.|.++|+.+
T Consensus 274 ALDA~TGk~~ 283 (764)
T TIGR03074 274 ALDADTGKLC 283 (764)
T ss_pred EEECCCCCEE
Confidence 9999999844
No 458
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=38.88 E-value=1.8e+02 Score=22.38 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=19.5
Q ss_pred EEEEEec-CCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 54 LEASFSQ-HLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 54 ~~~~fs~-d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
.++.+.+ ++ ..|+++..-..|...|.++++
T Consensus 274 Nsi~yd~~dd-----------~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 274 NSIDYDPSDD-----------SIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp EEEEEETTTT-----------EEEEEETTT-EEEEEE-TTS-
T ss_pred CccEEeCCCC-----------eEEEEcCcceEEEEEECCCCc
Confidence 4577777 55 666666656688888887776
No 459
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=38.55 E-value=23 Score=28.76 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=26.3
Q ss_pred cCCCCCCeeEEEECCCCCeEEEEe-CCCeEEEEEcC
Q 036317 8 DGGDVSDANEVKLSNDGRLMLLTT-LEGHIHVLHSF 42 (106)
Q Consensus 8 ~~~~~~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~ 42 (106)
+..++.++..+.|.+.|..++++. ....|+++.++
T Consensus 311 fkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim 346 (788)
T KOG2109|consen 311 FKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM 346 (788)
T ss_pred eeeecCcccccccccCceEEEEEeeccceeeeEEec
Confidence 345677999999999999888776 44566666654
No 460
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=38.38 E-value=1.5e+02 Score=21.28 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=34.4
Q ss_pred CeEEEEeCCCeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 25 RLMLLTTLEGHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 25 ~~l~~~~~~~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
+....+-.++...+||..+.+.. ...+.-..++ .|+ +.++.++....++.+|.++-+
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg-----------~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDG-----------KRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECS-----------SCEEEE-SSSEEEEE-TTT-S
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cCC-----------CEEEEECCccceEEECCcccc
Confidence 33445567788889998877661 1122223333 677 777777777789999988765
No 461
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=38.18 E-value=1.1e+02 Score=19.58 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=21.6
Q ss_pred cEEEEEecCCcceeeeeeecccEE-EEecCCCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317 53 TLEASFSQHLSLVALSVLILRSWV-LEGSGDGSVYAWSARSGK-------------EPPVIKWAPG 104 (106)
Q Consensus 53 ~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i~~wd~~~~~-------------~v~~i~~sp~ 104 (106)
+.-.-|.+|. ..| ++|-.|++|+.+++...+ ..+.++|-|+
T Consensus 13 ~L~P~yD~dt-----------~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 13 VLMPFYDEDT-----------NLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp -EEEEE-TTT------------EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred eeEeeEcCCC-----------CEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 3446778887 544 455568899999998874 5566666654
No 462
>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues.; PDB: 1ZSO_B.
Probab=37.70 E-value=72 Score=20.94 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=14.6
Q ss_pred EEEecCCcceeeeeeecccEEEEecCCCcEE-EEECCCCC
Q 036317 56 ASFSQHLSLVALSVLILRSWVLEGSGDGSVY-AWSARSGK 94 (106)
Q Consensus 56 ~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~-~wd~~~~~ 94 (106)
+.|+|++ .+++.+.+.|+.. =.|++.+.
T Consensus 108 ~~f~p~~-----------~~~~~~~esG~~f~~vdL~e~e 136 (161)
T PF05907_consen 108 VEFSPRG-----------GWVAVSVESGTKFEDVDLSEGE 136 (161)
T ss_dssp EEE---S------------EEEEET-TS-EEEEE--TTS-
T ss_pred EEEecCC-----------cEEEEEecCCCEEEeccCCCCc
Confidence 4677777 9999998777766 77777765
No 463
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=37.31 E-value=2.3e+02 Score=25.11 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred eEEEEeCC---------CeEEEEEcCC-----Cce----------eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 26 LMLLTTLE---------GHIHVLHSFQ-----GTL----------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 26 ~l~~~~~~---------~~i~l~d~~~-----~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
|+++++.- |.++|+|+-. |+. ........++...-+| +++++..
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G------------~l~~~~G 1115 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRG------------HLLSSQG 1115 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEecc------------EEEEccC
Q ss_pred CCcEEEEECCCCCCCcEEEe
Q 036317 82 DGSVYAWSARSGKEPPVIKW 101 (106)
Q Consensus 82 d~~i~~wd~~~~~~v~~i~~ 101 (106)
. .|.+|+++.+..+..++|
T Consensus 1116 q-KI~v~~l~r~~~ligVaF 1134 (1366)
T KOG1896|consen 1116 Q-KIIVRKLDRDSELIGVAF 1134 (1366)
T ss_pred c-EEEEEEeccCCcceeeEE
No 464
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=37.22 E-value=54 Score=15.90 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=17.1
Q ss_pred CeeEEEECCCCCeEEEEeCCC
Q 036317 14 DANEVKLSNDGRLMLLTTLEG 34 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~ 34 (106)
....++++++|+..+++..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 689999999999777776554
No 465
>PHA03098 kelch-like protein; Provisional
Probab=36.93 E-value=1.7e+02 Score=22.51 Aligned_cols=24 Identities=0% Similarity=0.098 Sum_probs=14.5
Q ss_pred CCCeEEEEeCC------CeEEEEEcCCCce
Q 036317 23 DGRLMLLTTLE------GHIHVLHSFQGTL 46 (106)
Q Consensus 23 dg~~l~~~~~~------~~i~l~d~~~~~~ 46 (106)
+++.++.++.+ +.+..||..+.+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 45555665522 4577888776654
No 466
>PHA02713 hypothetical protein; Provisional
Probab=36.11 E-value=1.7e+02 Score=22.94 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=15.4
Q ss_pred CCCCeEEEEeCC-----CeEEEEEcCCCce
Q 036317 22 NDGRLMLLTTLE-----GHIHVLHSFQGTL 46 (106)
Q Consensus 22 pdg~~l~~~~~~-----~~i~l~d~~~~~~ 46 (106)
-+|+..+.|+.+ ..+..||..+.+-
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 356666666654 3467788776654
No 467
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=35.04 E-value=2.2e+02 Score=22.22 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=20.9
Q ss_pred CCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCc
Q 036317 13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGT 45 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~ 45 (106)
.-|+++..|.|.++|.+++ ..|.++.||+.+..
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 3578999999999997666 77999999987643
No 468
>PHA03098 kelch-like protein; Provisional
Probab=33.74 E-value=1.8e+02 Score=22.28 Aligned_cols=21 Identities=5% Similarity=0.237 Sum_probs=14.4
Q ss_pred cEEEEecCC-----CcEEEEECCCCC
Q 036317 74 SWVLEGSGD-----GSVYAWSARSGK 94 (106)
Q Consensus 74 ~~i~t~s~d-----~~i~~wd~~~~~ 94 (106)
+..+.|+.+ ..+.++|.++.+
T Consensus 489 ~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 489 KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 555555543 478899988876
No 469
>PLN02193 nitrile-specifier protein
Probab=32.82 E-value=2.2e+02 Score=21.69 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=16.0
Q ss_pred CCCeEEEEeCC----CeEEEEEcCCCce
Q 036317 23 DGRLMLLTTLE----GHIHVLHSFQGTL 46 (106)
Q Consensus 23 dg~~l~~~~~~----~~i~l~d~~~~~~ 46 (106)
+++.++.++.+ ..++++|..+.+-
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEE
Confidence 46666666544 5678889877665
No 470
>PRK13615 lipoprotein LpqB; Provisional
Probab=32.40 E-value=2.6e+02 Score=22.31 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=29.1
Q ss_pred eEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-ccCCCcEEEEEecCC
Q 036317 16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-VSHNSTLEASFSQHL 62 (106)
Q Consensus 16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-~~~~~~~~~~fs~d~ 62 (106)
.+.+.|+||+.++....++.+.++........ .........+|+++|
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g 384 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDAVLLDTRPGLVAPSLDAQG 384 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcceeeccCCccccCcCcCCC
Confidence 67899999998888777776666654422111 112234556777766
No 471
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.43 E-value=3.1e+02 Score=22.96 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL 46 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~ 46 (106)
.+.+..+..||+.++++.-++.|.+.+.+....+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 46788999999999999999999999988765554
No 472
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=31.33 E-value=2e+02 Score=20.65 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=48.2
Q ss_pred CeeEEEECCCCCeEEEEeCCC--eEEEEEcCCCcee----ccCC-CcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEG--HIHVLHSFQGTLP----VSHN-STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~--~i~l~d~~~~~~~----~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
-...+.|..+|..+-+++..| .++.+|..+|+.. -... .-..++...|. -+.+|= .++...
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~-----------l~qLTW-k~~~~f 113 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK-----------LYQLTW-KEGTGF 113 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE-----------EEEEES-SSSEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE-----------EEEEEe-cCCeEE
Confidence 456888888888888888776 7788899999871 1111 12345555554 444444 567888
Q ss_pred EEECCCCCCCcEEE
Q 036317 87 AWSARSGKEPPVIK 100 (106)
Q Consensus 87 ~wd~~~~~~v~~i~ 100 (106)
+||.++-+.+..+.
T Consensus 114 ~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 114 VYDPNTLKKIGTFP 127 (264)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEccccceEEEEEe
Confidence 88888766444433
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=30.84 E-value=1.1e+02 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=0.0
Q ss_pred CCCeeEEEECCCCCeEEEEeCCCeEEEEE
Q 036317 12 VSDANEVKLSNDGRLMLLTTLEGHIHVLH 40 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d 40 (106)
+.+|-++.|.++++.+++...+|.+.+||
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d 157 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYD 157 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEe
No 474
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=30.59 E-value=76 Score=15.61 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=12.0
Q ss_pred cEEEEecCC------CcEEEEECCCCC
Q 036317 74 SWVLEGSGD------GSVYAWSARSGK 94 (106)
Q Consensus 74 ~~i~t~s~d------~~i~~wd~~~~~ 94 (106)
+.++.|+.+ ..+.++|+++++
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~ 40 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIETNT 40 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETTTTE
T ss_pred eEEEECCCCCCCcccCCEEEEECCCCE
Confidence 566665443 268888988875
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.40 E-value=1.7e+02 Score=25.03 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.9
Q ss_pred cEEEEecCCCcEEEEECCCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~ 94 (106)
..++++..||++..||...|+
T Consensus 247 ~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 247 SHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ceEEEEEecCCEEeeecCCCc
Confidence 999999999999999999985
No 476
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=30.32 E-value=1.4e+02 Score=20.86 Aligned_cols=32 Identities=28% Similarity=0.182 Sum_probs=23.6
Q ss_pred cEEEEecCCCcEEEEECCCCCCCcEEEeCCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGKEPPVIKWAPGS 105 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~~v~~i~~sp~~ 105 (106)
-.+...+.||.|..........+-.+.|+|-+
T Consensus 194 l~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~ 225 (254)
T PRK11366 194 LRVEARSPDGLVEAVSVINHPFALGVQWHPEW 225 (254)
T ss_pred eEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCc
Confidence 44555578888888877654457899999975
No 477
>PF13964 Kelch_6: Kelch motif
Probab=29.78 E-value=68 Score=15.97 Aligned_cols=12 Identities=8% Similarity=0.232 Sum_probs=9.4
Q ss_pred CcEEEEECCCCC
Q 036317 83 GSVYAWSARSGK 94 (106)
Q Consensus 83 ~~i~~wd~~~~~ 94 (106)
..+.++|.++.+
T Consensus 28 ~~v~~yd~~t~~ 39 (50)
T PF13964_consen 28 NDVERYDPETNT 39 (50)
T ss_pred ccEEEEcCCCCc
Confidence 478888888876
No 478
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=29.60 E-value=3.1e+02 Score=23.76 Aligned_cols=57 Identities=9% Similarity=0.059 Sum_probs=39.7
Q ss_pred CCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCC
Q 036317 23 DGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARS 92 (106)
Q Consensus 23 dg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~ 92 (106)
+|+++ ++-+..++++++.+.+. -+.....+.+...-.| .+|+.|+-=+++.+-..+.
T Consensus 839 ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g-----------deI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 839 NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKG-----------DEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecC-----------cEEEEeeccceEEEEEEec
Confidence 45533 34568899999988844 3355566777888888 8888887777666655543
No 479
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=29.40 E-value=53 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=18.4
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHV 38 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l 38 (106)
-...=-|+.+|+.++++.+++-++.
T Consensus 260 ~~~g~i~~~~G~LvAs~~Qegl~r~ 284 (286)
T PRK10526 260 FVRGEFYTQDGVLVASTVQEGVMRN 284 (286)
T ss_pred EEEEEEECCCCCEEEEEEeeEEEEe
Confidence 4455567888888888888877764
No 480
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=29.21 E-value=2.5e+02 Score=21.21 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=36.4
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc------e---ec--cCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT------L---PV--SHNSTLEASFSQHLSLVALSVLILRSWVLEGSG 81 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~------~---~~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~ 81 (106)
..+.++.+.++|..++ ++..+.+.. ....++ . .. ....+.++.|.+++ ..+++| .
T Consensus 281 ~~l~~v~~~~dg~l~l-~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~-----------~~~a~G-~ 346 (398)
T PLN00033 281 RRIQNMGWRADGGLWL-LTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKK-----------EAWAAG-G 346 (398)
T ss_pred cceeeeeEcCCCCEEE-EeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCC-----------cEEEEE-C
Confidence 4688999999999554 456666554 333332 2 11 11235678888887 655555 5
Q ss_pred CCcEEEE
Q 036317 82 DGSVYAW 88 (106)
Q Consensus 82 d~~i~~w 88 (106)
+|.+...
T Consensus 347 ~G~v~~s 353 (398)
T PLN00033 347 SGILLRS 353 (398)
T ss_pred CCcEEEe
Confidence 5555544
No 481
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=29.15 E-value=2.3e+02 Score=20.62 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=35.8
Q ss_pred CCCeEEEEeCCCeEEEEEcCCCce---eccCC--CcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317 23 DGRLMLLTTLEGHIHVLHSFQGTL---PVSHN--STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK 94 (106)
Q Consensus 23 dg~~l~~~~~~~~i~l~d~~~~~~---~~~~~--~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~ 94 (106)
+|+ +++++.++.++.+|..+|+. ..-.+ .......-.++ .+..++.++.++..|..+|+
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~------------~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG------------TVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc------------EEEEecCCCeEEEEEccCCc
Confidence 677 77788888888889888887 11111 11222333344 33334366777777777776
No 482
>PRK13684 Ycf48-like protein; Provisional
Probab=29.00 E-value=2.3e+02 Score=20.59 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=29.6
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-e--c-----cCCCcEEEEEecCC
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-P--V-----SHNSTLEASFSQHL 62 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-~--~-----~~~~~~~~~fs~d~ 62 (106)
..+..+.+.|+++.+++ +..+.+.+-....|+- . . ....+.++.+.+++
T Consensus 215 ~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 215 RRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred ccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence 47889999999986554 5567665432333432 1 1 11234567888888
No 483
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=28.62 E-value=1e+02 Score=23.00 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=25.2
Q ss_pred CCeeEEEECCCCCeEEEEeCCCeEEEEEcCC
Q 036317 13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ 43 (106)
Q Consensus 13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~ 43 (106)
..|..+...+..+.+++.+.++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3599999999999999999999999999863
No 484
>PRK13613 lipoprotein LpqB; Provisional
Probab=28.32 E-value=3.2e+02 Score=22.01 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=31.7
Q ss_pred CeeEEEECCCCCeEEEEeC---CCeEEEEE---cCCCce--------eccCCCcEEEEEecCC
Q 036317 14 DANEVKLSNDGRLMLLTTL---EGHIHVLH---SFQGTL--------PVSHNSTLEASFSQHL 62 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~---~~~i~l~d---~~~~~~--------~~~~~~~~~~~fs~d~ 62 (106)
+|..+.+|+||-.+++... .+++.+=- -..|.. ......+.+++|..++
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred EeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCC
Confidence 7999999999999987664 24454322 223332 1122346778999998
No 485
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=27.65 E-value=82 Score=25.27 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=20.4
Q ss_pred eeecCCCCCCeeEEEECCCCCeEEEEeCC
Q 036317 5 IFSDGGDVSDANEVKLSNDGRLMLLTTLE 33 (106)
Q Consensus 5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~ 33 (106)
.|-......++....|+||++.+.++-+.
T Consensus 546 rf~t~P~g~E~tG~~FspD~~TlFV~vQH 574 (616)
T COG3211 546 RFLTGPIGCEFTGPCFSPDGKTLFVNVQH 574 (616)
T ss_pred eeccCCCcceeecceeCCCCceEEEEecC
Confidence 34333334599999999999988776543
No 486
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=27.64 E-value=2.2e+02 Score=24.26 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCeeEEEECCCCCeEEE-EeCCC-----eEEEEEcCC
Q 036317 12 VSDANEVKLSNDGRLMLL-TTLEG-----HIHVLHSFQ 43 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~-~~~~~-----~i~l~d~~~ 43 (106)
...|.+=+|||||++++- .+.++ .|.+.|+.+
T Consensus 349 ~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 349 TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence 346777889999999986 55444 577778754
No 487
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=27.34 E-value=3.5e+02 Score=22.25 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=31.6
Q ss_pred cEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC--------CCcEEEeCCC
Q 036317 53 TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK--------EPPVIKWAPG 104 (106)
Q Consensus 53 ~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~--------~v~~i~~sp~ 104 (106)
+-.++.|||++++|++.-.. |++.-++++-|+++|+ ....+.|.++
T Consensus 131 Lg~~~~s~D~~~la~s~D~~------G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d 184 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVL------GDEQYTLRFKDLATGEELPDEITNTSGSFAWAAD 184 (682)
T ss_pred eeeeeeCCCCceEEEEEecc------cccEEEEEEEecccccccchhhcccccceEEecC
Confidence 34588999997777665332 4455689999999988 3455666553
No 488
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=25.59 E-value=1.6e+02 Score=22.50 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.8
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCC
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQ 43 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~ 43 (106)
.-..++.+|.|+.++++..++.+.++-...
T Consensus 45 ~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~ 74 (504)
T PF10433_consen 45 PGQYLAVDPSGRCIAVSAYEGNFLVYPLNR 74 (504)
T ss_dssp T--EEEE-TTSSEEEEEEBTTEEEEEE-SS
T ss_pred CCcEEEECCcCCEEEEEecCCeEEEEEecc
Confidence 456799999999999999999999998876
No 489
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=25.07 E-value=2.8e+02 Score=20.26 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=33.3
Q ss_pred eEEEEeCCCeEEEEEcCCCc--e---------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317 26 LMLLTTLEGHIHVLHSFQGT--L---------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA 87 (106)
Q Consensus 26 ~l~~~~~~~~i~l~d~~~~~--~---------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~ 87 (106)
.+-+++-|+.+++....... + ....+-+..--|+.|| +.|++....|.++.
T Consensus 223 ~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf~r~G-----------~LiA~~~QEG~~r~ 284 (289)
T COG1946 223 GIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQLFDRDG-----------QLIASVVQEGLIRY 284 (289)
T ss_pred cceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeeeEEEcCCC-----------CEEEEEeeeEEEec
Confidence 56777888888766543311 1 2233334456799999 88888888877664
No 490
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=24.87 E-value=4.7e+02 Score=22.79 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=18.1
Q ss_pred cEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG 104 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~ 104 (106)
..|+-+..++.+..-+++.+. .|.|++++|-
T Consensus 500 sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~ 541 (1096)
T KOG1897|consen 500 SQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPL 541 (1096)
T ss_pred eEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccC
Confidence 445555455555555555433 7888888863
No 491
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=23.22 E-value=2.1e+02 Score=18.80 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=24.1
Q ss_pred cEEEEecCCCcEEEEECCCCCCCcEEEeCCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGKEPPVIKWAPGS 105 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~~v~~i~~sp~~ 105 (106)
-.++..+.|+.+..........+-.+.|+|-+
T Consensus 142 ~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~ 173 (189)
T cd01745 142 LRVEARAPDGVIEAIESPDRPFVLGVQWHPEW 173 (189)
T ss_pred CEEEEECCCCcEEEEEeCCCCeEEEEecCCCc
Confidence 34444467888988888765789999999964
No 492
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=23.00 E-value=1e+02 Score=18.28 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=6.4
Q ss_pred EECCCCCeEEEEeC
Q 036317 19 KLSNDGRLMLLTTL 32 (106)
Q Consensus 19 ~~spdg~~l~~~~~ 32 (106)
-|+++|+.+++..+
T Consensus 87 l~~~~G~LvAs~~Q 100 (104)
T cd03444 87 IFTRDGELVASVAQ 100 (104)
T ss_pred EECCCCCEEEEEEE
Confidence 34445554444443
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.82 E-value=3e+02 Score=19.81 Aligned_cols=35 Identities=6% Similarity=0.113 Sum_probs=25.4
Q ss_pred CCCeeEEEECCCCCeEEEEe------CCCeEEEEEcCCCce
Q 036317 12 VSDANEVKLSNDGRLMLLTT------LEGHIHVLHSFQGTL 46 (106)
Q Consensus 12 ~~~v~~v~~spdg~~l~~~~------~~~~i~l~d~~~~~~ 46 (106)
.+.|++++|..+.+.++.+. ....+..||..+...
T Consensus 36 ~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 36 SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 35899999997777666553 345678888877765
No 494
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=22.47 E-value=1.4e+02 Score=22.29 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=21.6
Q ss_pred CcceeeeeeecccEEEEecCCCcEEEEECCC
Q 036317 62 LSLVALSVLILRSWVLEGSGDGSVYAWSARS 92 (106)
Q Consensus 62 ~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~ 92 (106)
.+...+..-..++.+.+-.+++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3355565555558999999999999999975
No 495
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.44 E-value=3.3e+02 Score=20.15 Aligned_cols=67 Identities=3% Similarity=0.082 Sum_probs=38.8
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc--e-----------ecc-CCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT--L-----------PVS-HNSTLEASFSQHLSLVALSVLILRSWVLEG 79 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~--~-----------~~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~ 79 (106)
....+++.-+|+++++--.++++.++-+..+. . ... ......++|+|.+ +.+..+
T Consensus 130 DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-----------~~l~~a 198 (316)
T COG3204 130 DPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-----------HRLFVA 198 (316)
T ss_pred ChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-----------ceEEEE
Confidence 34456667777776666666777666544331 1 111 2344678999988 655555
Q ss_pred cCCCcEEEEECC
Q 036317 80 SGDGSVYAWSAR 91 (106)
Q Consensus 80 s~d~~i~~wd~~ 91 (106)
=+-.-+.|+..+
T Consensus 199 KEr~P~~I~~~~ 210 (316)
T COG3204 199 KERNPIGIFEVT 210 (316)
T ss_pred EccCCcEEEEEe
Confidence 454455555554
No 496
>CHL00101 trpG anthranilate synthase component 2
Probab=21.93 E-value=2.5e+02 Score=18.53 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=22.1
Q ss_pred cEEEEecCCCcEEEEECCCCCCCcEEEeCCCC
Q 036317 74 SWVLEGSGDGSVYAWSARSGKEPPVIKWAPGS 105 (106)
Q Consensus 74 ~~i~t~s~d~~i~~wd~~~~~~v~~i~~sp~~ 105 (106)
-.++..++++.+.....+....+..+.|+|-+
T Consensus 141 ~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~ 172 (190)
T CHL00101 141 LEITAWTEDGLIMACRHKKYKMLRGIQFHPES 172 (190)
T ss_pred eEEEEEcCCCcEEEEEeCCCCCEEEEEeCCcc
Confidence 34555567788877766543339999999964
No 497
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.62 E-value=4.9e+02 Score=23.22 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=33.4
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------ecc-CCCcEEEEEecCC
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVS-HNSTLEASFSQHL 62 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~-~~~~~~~~fs~d~ 62 (106)
..+++.|+|-|+-++++-+.|++.-|-..-... +.. ..++.+++|=...
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecce
Confidence 688999999999999999999887765422211 222 2455666666554
No 498
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.55 E-value=3.5e+02 Score=20.14 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=36.7
Q ss_pred EEEeCCCeEEEEEcCCCce------ec-----cCCCcEEEEEecCCcceeeeeeecccEEEEecCCC--cEEEEECC
Q 036317 28 LLTTLEGHIHVLHSFQGTL------PV-----SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG--SVYAWSAR 91 (106)
Q Consensus 28 ~~~~~~~~i~l~d~~~~~~------~~-----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~--~i~~wd~~ 91 (106)
.....-..||.+|..++++ .- -.+.+.++-+.|-. ..++-+.+|| .+=+|.+.
T Consensus 72 dF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~-----------D~LLlAR~DGh~nLGvy~ld 137 (339)
T PF09910_consen 72 DFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYE-----------DRLLLARADGHANLGVYSLD 137 (339)
T ss_pred EEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCc-----------CEEEEEecCCcceeeeEEEc
Confidence 3344456789999888887 11 12445668899988 8888888888 45567654
No 499
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=21.24 E-value=3.7e+02 Score=20.34 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=36.3
Q ss_pred CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----e---ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317 14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----P---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY 86 (106)
Q Consensus 14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~ 86 (106)
.+.++.|.+++. +++++..|.+.... ..|+- + .-......+.|.+++ +-.++| .+|.|.
T Consensus 329 ~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~-----------~g~~~G-~~G~il 394 (398)
T PLN00033 329 GILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDK-----------KGFVLG-NDGVLL 394 (398)
T ss_pred ceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCC-----------ceEEEe-CCcEEE
Confidence 588899999988 45556666555433 33333 1 112345678888777 655555 556554
Q ss_pred EE
Q 036317 87 AW 88 (106)
Q Consensus 87 ~w 88 (106)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 43
No 500
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=20.94 E-value=3.7e+02 Score=20.18 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=35.9
Q ss_pred CCeEEEEeCCCeEEEEEcCCCce---ec---cCCCcEEEEEecCCcceeeeeeecccEEEEecCCC-cEEEEECCC
Q 036317 24 GRLMLLTTLEGHIHVLHSFQGTL---PV---SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG-SVYAWSARS 92 (106)
Q Consensus 24 g~~l~~~~~~~~i~l~d~~~~~~---~~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~-~i~~wd~~~ 92 (106)
++++++......+.+.|+.+++. .. .......+...|+. +.....+.+. .+.+-|.++
T Consensus 258 ~~~~~v~~~~~~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~vvs~~~~~~~v~d~et 322 (355)
T COG1499 258 RQLVLVRSIGKGIVVLDLETGEPVEITWSVYKRNEGKVAVKEPRL-----------KKAVVVSRDPSAIQVLDPET 322 (355)
T ss_pred CeEEEEEEecCceEEEecccCCccccChhhcccCcceeeeccccc-----------eEEEEEecCCCceEEEecce
Confidence 57888999999999999999865 11 11112345566665 4333333333 477777754
Done!