BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036320
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 18/278 (6%)
Query: 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVP-QTLSNLTLLYELDLSNN 163
++G+DL+ G +P G S L + L+SN F G +P TL + L LDLS N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 164 RFVGPFPNVVLSLPM-LNYLDIRFNEFEGPLPPELFNK---KLDAIFVNNNRFTSMIPQN 219
F G P + +L L LD+ N F GP+ P L L +++ NN FT IP
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 220 FGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLD 279
+ + L ++ N G +P S+ +L+ + +L L + G +P E+ Y+ L L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 280 VSLNKLVGPIPYSIAGXXXXXXXXXXXXXXSGIVPEGVCLLPNLSNFTFSYNFFC----E 335
+ N L G IP ++ +G +P+ + L NL+ S N F
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 336 EEGICNNLTSKGIAYDDRWNCF----PEKPFQRSNKVC 369
E G C +L I D N F P F++S K+
Sbjct: 530 ELGDCRSL----IWLDLNTNLFNGTIPAAMFKQSGKIA 563
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 108/262 (41%), Gaps = 54/262 (20%)
Query: 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNN 163
++ + + L+ D+ G +P L ++L I L++NR G +P+ + L L L LSNN
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 164 RFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNK--KLDAIFVNN------------ 209
F G P + L +LD+ N F G +P +F + K+ A F+
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 581
Query: 210 --------------------NRFTSMIPQN-------------FGSNNSASVLVIANNKF 236
NR ++ P N F +N S L ++ N
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 237 GGCLPPSVANLANSIEELLLIN---TSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSI 293
G +P + S+ L ++N ISG +P EVG L L +LD+S NKL G IP ++
Sbjct: 642 SGYIPKEIG----SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 294 AGXXXXXXXXXXXXXXSGIVPE 315
+ SG +PE
Sbjct: 698 SALTMLTEIDLSNNNLSGPIPE 719
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 7/215 (3%)
Query: 128 LSDLALIHLNSNRFCGIVPQTLSNL-TLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRF 186
L L + L N+F G +P LS L LDLS N F G P S +L L +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 187 NEFEGPLPPE--LFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVI---ANNKFGGCLP 241
N F G LP + L + L + ++ N F+ +P++ +N SAS+L + +NN G LP
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL-TNLSASLLTLDLSSNNFSGPILP 383
Query: 242 PSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGXXXXXX 301
N N+++EL L N +G +PP + +L L +S N L G IP S+
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 302 XXXXXXXXSGIVPEGVCLLPNLSNFTFSYNFFCEE 336
G +P+ + + L +N E
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEF 189
+L + ++SN F +P L + + L LD+S N+ G F + + L L+I N+F
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 190 EGPLPPELFNKKLDAIFVNNNRFTSMIPQNF-GSNNSASVLVIANNKFGGCLPPSVANLA 248
GP+PP L K L + + N+FT IP G+ ++ + L ++ N F G +PP + +
Sbjct: 257 VGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 249 NSIEELLLINTSISGCLPPE-VGYLYKLRVLDVSLNKLVGPIPYSIA 294
L N + SG LP + + + L+VLD+S N+ G +P S+
Sbjct: 316 LLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 110 IDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPF 169
++L + DI+G +PDE+G L L ++ L+SN+ G +PQ +S LT+L E+DLSNN GP
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 170 PNV 172
P +
Sbjct: 718 PEM 720
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Query: 97 PPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLY 156
PP + ++VS + L+ ++G +P LG LS L + L N G +PQ L + L
Sbjct: 408 PPTLSNCSELVS-LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 157 ELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFN-KKLDAIFVNNNRFTSM 215
L L N G P+ + + LN++ + N G +P + + L + ++NN F+
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 216 IPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSI 251
IP G S L + N F G +P ++ + I
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 18/278 (6%)
Query: 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVP-QTLSNLTLLYELDLSNN 163
++G+DL+ G +P G S L + L+SN F G +P TL + L LDLS N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 164 RFVGPFPNVVLSLPM-LNYLDIRFNEFEGPLPPELFNK---KLDAIFVNNNRFTSMIPQN 219
F G P + +L L LD+ N F GP+ P L L +++ NN FT IP
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 220 FGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLD 279
+ + L ++ N G +P S+ +L+ + +L L + G +P E+ Y+ L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 280 VSLNKLVGPIPYSIAGXXXXXXXXXXXXXXSGIVPEGVCLLPNLSNFTFSYNFFC----E 335
+ N L G IP ++ +G +P+ + L NL+ S N F
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 336 EEGICNNLTSKGIAYDDRWNCF----PEKPFQRSNKVC 369
E G C +L I D N F P F++S K+
Sbjct: 533 ELGDCRSL----IWLDLNTNLFNGTIPAAMFKQSGKIA 566
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 108/262 (41%), Gaps = 54/262 (20%)
Query: 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNN 163
++ + + L+ D+ G +P L ++L I L++NR G +P+ + L L L LSNN
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 164 RFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNK--KLDAIFVNN------------ 209
F G P + L +LD+ N F G +P +F + K+ A F+
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 210 --------------------NRFTSMIPQN-------------FGSNNSASVLVIANNKF 236
NR ++ P N F +N S L ++ N
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 237 GGCLPPSVANLANSIEELLLIN---TSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSI 293
G +P + S+ L ++N ISG +P EVG L L +LD+S NKL G IP ++
Sbjct: 645 SGYIPKEIG----SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 294 AGXXXXXXXXXXXXXXSGIVPE 315
+ SG +PE
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPE 722
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 7/215 (3%)
Query: 128 LSDLALIHLNSNRFCGIVPQTLSNL-TLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRF 186
L L + L N+F G +P LS L LDLS N F G P S +L L +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 187 NEFEGPLPPE--LFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVI---ANNKFGGCLP 241
N F G LP + L + L + ++ N F+ +P++ +N SAS+L + +NN G LP
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL-TNLSASLLTLDLSSNNFSGPILP 386
Query: 242 PSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGXXXXXX 301
N N+++EL L N +G +PP + +L L +S N L G IP S+
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 302 XXXXXXXXSGIVPEGVCLLPNLSNFTFSYNFFCEE 336
G +P+ + + L +N E
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEF 189
+L + ++SN F +P L + + L LD+S N+ G F + + L L+I N+F
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 190 EGPLPPELFNKKLDAIFVNNNRFTSMIPQNF-GSNNSASVLVIANNKFGGCLPPSVANLA 248
GP+PP L K L + + N+FT IP G+ ++ + L ++ N F G +PP + +
Sbjct: 260 VGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 249 NSIEELLLINTSISGCLPPE-VGYLYKLRVLDVSLNKLVGPIPYSIA 294
L N + SG LP + + + L+VLD+S N+ G +P S+
Sbjct: 319 LLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 110 IDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPF 169
++L + DI+G +PDE+G L L ++ L+SN+ G +PQ +S LT+L E+DLSNN GP
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 170 PNV 172
P +
Sbjct: 721 PEM 723
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 98 PPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYE 157
P +D+ ++ +D++ ++G++P E+G + L +++L N G +P + +L L
Sbjct: 626 PTFDNNGSMMF-LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 158 LDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLP 194
LDLS+N+ G P + +L ML +D+ N GP+P
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Query: 97 PPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLY 156
PP + ++VS + L+ ++G +P LG LS L + L N G +PQ L + L
Sbjct: 411 PPTLSNCSELVS-LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 157 ELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFN-KKLDAIFVNNNRFTSM 215
L L N G P+ + + LN++ + N G +P + + L + ++NN F+
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 216 IPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSI 251
IP G S L + N F G +P ++ + I
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 3/194 (1%)
Query: 98 PPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYE 157
PP K+ + + + + +++G +PD L + L + + N G +P ++S+L L
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 158 LDLSNNRFVGPFPNVVLSLPML-NYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMI 216
+ NR G P+ S L + I N G +PP N L + ++ N
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213
Query: 217 PQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLR 276
FGS+ + + +A N L L+ ++ L L N I G LP + L L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 277 VLDVSLNKLVGPIP 290
L+VS N L G IP
Sbjct: 272 SLNVSFNNLCGEIP 285
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 26/281 (9%)
Query: 71 IYSDPNNFTT--NWVGPSVCNYR---GIYCAPPPYDHKIQVVSGIDLNNADIAGF----- 120
I D N TT +W+ + C R G+ C +++ NN D++G
Sbjct: 14 IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRV--------NNLDLSGLNLPKP 65
Query: 121 --LPDELGLLSDLALIHLNS-NRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLP 177
+P L L L +++ N G +P ++ LT L+ L +++ G P+ + +
Sbjct: 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 178 MLNYLDIRFNEFEGPLPPELFN-KKLDAIFVNNNRFTSMIPQNFGSNNSA-SVLVIANNK 235
L LD +N G LPP + + L I + NR + IP ++GS + + + I+ N+
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 236 FGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAG 295
G +PP+ ANL ++ + L + G G + + ++ N L + +
Sbjct: 186 LTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL 242
Query: 296 XXXXXXXXXXXXXXSGIVPEGVCLLPNLSNFTFSYNFFCEE 336
G +P+G+ L L + S+N C E
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 2/153 (1%)
Query: 90 YRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDL-ALIHLNSNRFCGIVPQT 148
Y + PP + + GI + I+G +PD G S L + ++ NR G +P T
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 149 LSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVN 208
+NL L + +DLS N G + S + + N L +K L+ + +
Sbjct: 194 FANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252
Query: 209 NNRFTSMIPQNFGSNNSASVLVIANNKFGGCLP 241
NNR +PQ L ++ N G +P
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 107 VSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQ 147
++G+DL N I G LP L L L ++++ N CG +PQ
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 30/167 (17%)
Query: 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNN---RFVGPF----------------- 169
+L ++ L+SN GI + LTLL +LDLS+N R V P
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 170 -----PNVVLSLPMLNYLDIRFNEFEGPLPPELFNK--KLDAIFVNNNRFTSMIPQNFGS 222
P + L L YL ++ N + LP F L +F++ NR S+ F
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 223 NNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEV 269
+S L++ N P + +L + L N LP EV
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANN--LSMLPAEV 219
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 28/157 (17%)
Query: 129 SDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNN---RFVGPF---------------- 169
+L ++ L+SN I + L LL +LDLS+N R V P
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 170 ------PNVVLSLPMLNYLDIRFNEFEGPLPPELFNK--KLDAIFVNNNRFTSMIPQNFG 221
P + L L YL ++ N + LP + F L +F++ NR +S+ + F
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
Query: 222 SNNSASVLVIANNKFGGCLPPSVANLANSIEELLLIN 258
+S L++ N+ P + +L + L N
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 28/157 (17%)
Query: 129 SDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNN---RFVGPF---------------- 169
+L ++ L+SN I + L LL +LDLS+N R V P
Sbjct: 55 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 170 ------PNVVLSLPMLNYLDIRFNEFEGPLPPELFNK--KLDAIFVNNNRFTSMIPQNFG 221
P + L L YL ++ N + LP + F L +F++ NR +S+ + F
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFR 173
Query: 222 SNNSASVLVIANNKFGGCLPPSVANLANSIEELLLIN 258
+S L++ N+ P + +L + L N
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 120 FLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPML 179
+P EL L LI L++NR + Q+ SN+T L L LS NR P L L
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 180 NYLDIRFNEF 189
L + N+
Sbjct: 105 RLLSLHGNDI 114
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 126 GLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185
G+ D+ ++L+ N+F +VP+ LSN L +DLSNNR ++ L L +
Sbjct: 28 GIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 186 FNEFEGPLPPELFN--KKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANN 234
+N +PP F+ K L + ++ N + + F ++ S L I N
Sbjct: 87 YNRLRC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 193 LPPELFN-KKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSI 251
+P EL N K L I ++NNR +++ Q+F + L+++ N+ C+PP + S+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSL 104
Query: 252 EELLLINTSIS 262
L L IS
Sbjct: 105 RLLSLHGNDIS 115
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 128 LSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFN 187
L +L + + N+ + L L EL L N+ P V SL L YL + +N
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 188 EFEGPLPPELFNK--KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKF 236
E + LP +F+K L + + NN+ + F L + NN+
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 6/175 (3%)
Query: 110 IDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPF 169
+DL I DE L + LN N + P +NL L L L +NR
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 170 PNVVLSLPMLNYLDIRFNEFEGPLP---PELFNKKLDAIFVNNNRFTSMIPQNFGSNNSA 226
V L L LDI N+ L +L+N L ++ V +N + + F NS
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYN--LKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 227 SVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVS 281
L + +P + + + L L + +I+ LY+L+VL++S
Sbjct: 155 EQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 107 VSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRF- 165
++ +DL N I+ P L L+ L + L +N+ I P L+ LT L L+L+ N+
Sbjct: 241 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
Query: 166 -VGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSM 215
+ P N L L YL + FN P KL +F NN+ + +
Sbjct: 297 DISPISN----LKNLTYLTLYFNNISDISPVSSL-TKLQRLFFYNNKVSDV 342
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 114 NADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP 170
N I+ P LG+L++L + LN N+ I TL++LT L +LDL+NN+ P
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 107 VSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRF- 165
++ +DL N I+ P L L+ L + L +N+ I P L+ LT L L+L+ N+
Sbjct: 241 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
Query: 166 -VGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSM 215
+ P N L L YL + FN P KL +F NN+ + +
Sbjct: 297 DISPISN----LKNLTYLTLYFNNISDISPVSSL-TKLQRLFFYNNKVSDV 342
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 114 NADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP 170
N I+ P LG+L++L + LN N+ I TL++LT L +LDL+NN+ P
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 107 VSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRF- 165
++ +DL N I+ P L L+ L + L +N+ I P L+ LT L L+L+ N+
Sbjct: 240 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 295
Query: 166 -VGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSM 215
+ P N L L YL + FN P KL +F NN+ + +
Sbjct: 296 DISPISN----LKNLTYLTLYFNNISDISPVSSL-TKLQRLFFYNNKVSDV 341
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 114 NADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP 170
N I+ P LG+L++L + LN N+ I TL++LT L +LDL+NN+ P
Sbjct: 203 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 107 VSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRF- 165
++ +DL N I+ P L L+ L + L +N+ I P L+ LT L L+L+ N+
Sbjct: 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300
Query: 166 -VGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSM 215
+ P N L L YL + FN P KL +F NN+ + +
Sbjct: 301 DISPISN----LKNLTYLTLYFNNISDISPVSSL-TKLQRLFFYNNKVSDV 346
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 114 NADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP 170
N I+ P LG+L++L + LN N+ I TL++LT L +LDL+NN+ P
Sbjct: 208 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%)
Query: 110 IDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPF 169
+DL N DI+ D+ L L + L +N+ I + S L L +L +S N V
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 170 PNVVLSLPMLNYLDIRFNE 188
PN+ SL L D R +
Sbjct: 119 PNLPSSLVELRIHDNRIRK 137
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 155 LYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVN--NNRF 212
L LD+S+ F + L L L + N F+ P++F + + F++ +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 213 TSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYL 272
+ P F S +S VL +A+N+ +P + + S++++ L +T+ C P + YL
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWL-HTNPWDCSCPRIDYL 540
Query: 273 YK 274
+
Sbjct: 541 SR 542
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 112 LNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRF----VG 167
LNN I P L +L ++ NSN+ I LT L +LDL++N G
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 168 PFPNV 172
F N+
Sbjct: 100 AFDNL 104
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 126 GLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185
G+ + +++L NR + P LT L LDL NN+ V L L L +
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 186 FNEFEGPLPPELFN--KKLDAIFVNNN 210
N+ + +P F+ + L I++ NN
Sbjct: 87 DNQLKS-IPRGAFDNLRSLTHIWLLNN 112
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 114 NADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP 170
N I+ P LG+L++L + LN N+ I TL++LT L +LDL+NN+ P
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 114 NADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP 170
N I+ P LG+L++L + LN N+ I TL++LT L +LDL+NN+ P
Sbjct: 203 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 114 NADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP 170
N I+ P LG+L++L + LN N+ I TL++LT L +LDL+NN+ P
Sbjct: 207 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 259
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 21/121 (17%)
Query: 72 YSDPNNFTTNWVGPSVCNYRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDL 131
+ DP+NFT ++G+ + V DL+ + I L +DL
Sbjct: 261 FKDPDNFT----------FKGLEASG---------VKTCDLSKSKIFALLKSVFSHFTDL 301
Query: 132 ALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVL-SLPMLNYLDIRFNEFE 190
+ L N I LT L +L+LS N F+G + + +L L LD+ +N
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 191 G 191
Sbjct: 361 A 361
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 126 GLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185
G+ + +++L N+ + P LT L LDL NN+ V L L L +
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
Query: 186 FNEFEGPLPPELFN--KKLDAIFVNNN 210
N+ + +P F+ K L I++ NN
Sbjct: 95 DNQLKS-IPRGAFDNLKSLTHIWLLNN 120
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 26/129 (20%)
Query: 142 CGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK 201
CG++P TL +L L EL LS+N P + L L EG L P+ +K
Sbjct: 98 CGVLPSTLRSLPTLRELHLSDN----PLGDAGLRLL-----------CEGLLDPQCHLEK 142
Query: 202 LDAIFVNNNRFTSMIPQNFGS----NNSASVLVIANNKFGGC----LPPSVANLANSIEE 253
L + R T+ + S + L ++NN G L +A+ A +E
Sbjct: 143 LQLEYC---RLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLET 199
Query: 254 LLLINTSIS 262
L L N ++
Sbjct: 200 LRLENCGLT 208
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 126 GLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185
G+ + +++L N+ + P LT L LDL NN+ V L L L +
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 186 FNEFEGPLPPELFN--KKLDAIFVNNN 210
N+ + +P F+ K L I++ NN
Sbjct: 87 DNQLKS-IPRGAFDNLKSLTHIWLLNN 112
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 107 VSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFV 166
V G D + + A + ELG+ +D+ +IH++ F I+ +T+ + +L+ FV
Sbjct: 30 VYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNII-RTIEKVQPDEVYNLAAQSFV 88
Query: 167 G 167
G
Sbjct: 89 G 89
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 128 LSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPM-LNYLDIRF 186
LS L +++LN N + P S+LT L L L++NR N LP L LDI
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN---DLPANLEILDISR 535
Query: 187 NEFEGPLPPELFNKKLDAIFVNNNRF 212
N+ P P++F L + + +N+F
Sbjct: 536 NQLLAP-NPDVF-VSLSVLDITHNKF 559
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 111 DLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP 170
D+++ DI+ + L +S + ++L +RF I T T L ELDL+ G P
Sbjct: 234 DIDDEDISSAMLKGLCEMS-VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LP 291
Query: 171 NVVLSLPMLNYLDIRFNEFE 190
+ + L +L L + N F+
Sbjct: 292 SGMKGLNLLKKLVLSVNHFD 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,163,741
Number of Sequences: 62578
Number of extensions: 452562
Number of successful extensions: 1018
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 137
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)