Query 036320
Match_columns 404
No_of_seqs 450 out of 4005
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-37 3.5E-42 336.0 26.2 271 58-338 28-301 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.8E-31 1E-35 285.5 18.7 234 104-338 139-373 (968)
3 KOG4194 Membrane glycoprotein 99.9 7.2E-28 1.6E-32 229.3 10.0 255 105-363 78-335 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.2E-28 2.6E-33 234.6 2.5 255 105-360 149-431 (873)
5 KOG0444 Cytoskeletal regulator 99.9 7E-26 1.5E-30 217.4 -0.5 253 103-362 101-379 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.8E-25 4E-30 214.5 -2.4 226 103-334 76-304 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 8.6E-26 1.9E-30 206.8 -8.4 245 103-360 66-312 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3.6E-25 7.8E-30 202.7 -7.5 260 106-377 46-309 (565)
9 PRK15370 E3 ubiquitin-protein 99.8 1.9E-20 4E-25 192.9 14.1 227 106-362 179-405 (754)
10 KOG4237 Extracellular matrix p 99.8 4.1E-21 8.8E-26 176.0 2.7 267 88-357 53-358 (498)
11 PRK15387 E3 ubiquitin-protein 99.8 5.3E-19 1.2E-23 181.4 18.2 217 105-361 222-438 (788)
12 KOG0618 Serine/threonine phosp 99.8 8.2E-22 1.8E-26 197.2 -2.5 243 105-356 241-487 (1081)
13 PRK15370 E3 ubiquitin-protein 99.8 7.7E-20 1.7E-24 188.4 11.6 229 105-360 199-430 (754)
14 PRK15387 E3 ubiquitin-protein 99.8 6E-19 1.3E-23 181.0 16.4 217 107-362 203-419 (788)
15 PLN03210 Resistant to P. syrin 99.8 2.1E-18 4.6E-23 188.5 19.4 249 103-362 609-887 (1153)
16 KOG4237 Extracellular matrix p 99.8 6.4E-21 1.4E-25 174.7 -2.7 265 110-380 51-361 (498)
17 cd00116 LRR_RI Leucine-rich re 99.8 5.3E-20 1.2E-24 174.5 0.6 232 104-336 22-293 (319)
18 PLN03210 Resistant to P. syrin 99.8 1.8E-17 3.9E-22 181.3 19.9 241 103-355 632-903 (1153)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-19 2.8E-24 171.9 1.6 251 109-361 2-294 (319)
20 KOG0617 Ras suppressor protein 99.8 4.1E-20 8.8E-25 151.5 -2.3 177 152-335 32-213 (264)
21 KOG0618 Serine/threonine phosp 99.7 6.1E-20 1.3E-24 183.9 -2.5 264 105-377 219-488 (1081)
22 KOG0617 Ras suppressor protein 99.7 2E-19 4.3E-24 147.5 -4.5 162 103-294 31-193 (264)
23 PLN03150 hypothetical protein; 99.7 8.8E-16 1.9E-20 157.4 14.9 154 55-213 368-528 (623)
24 KOG0532 Leucine-rich repeat (L 99.5 8.2E-16 1.8E-20 147.3 -2.6 195 127-331 73-270 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 8.7E-15 1.9E-19 140.4 -2.6 178 151-338 73-251 (722)
26 COG4886 Leucine-rich repeat (L 99.4 3.4E-13 7.3E-18 131.9 7.6 197 109-315 97-295 (394)
27 COG4886 Leucine-rich repeat (L 99.4 3.6E-13 7.7E-18 131.7 7.8 196 133-338 97-294 (394)
28 PLN03150 hypothetical protein; 99.2 1.9E-11 4.1E-16 125.6 8.6 106 251-356 420-526 (623)
29 KOG1909 Ran GTPase-activating 99.2 1.8E-12 3.9E-17 118.0 0.8 228 104-333 29-310 (382)
30 KOG1259 Nischarin, modulator o 99.2 3.2E-12 6.9E-17 114.2 2.2 128 202-336 286-414 (490)
31 KOG3207 Beta-tubulin folding c 99.2 4.5E-12 9.7E-17 118.5 1.1 212 126-338 118-343 (505)
32 KOG1909 Ran GTPase-activating 99.1 5.7E-12 1.2E-16 114.8 -1.3 234 123-358 24-311 (382)
33 KOG1259 Nischarin, modulator o 99.1 1.7E-11 3.7E-16 109.6 0.7 141 213-361 273-415 (490)
34 PF14580 LRR_9: Leucine-rich r 99.1 4E-11 8.8E-16 102.2 2.7 82 250-334 43-126 (175)
35 KOG0531 Protein phosphatase 1, 99.1 2.1E-11 4.5E-16 119.9 0.3 216 105-334 72-290 (414)
36 KOG0531 Protein phosphatase 1, 99.1 1.6E-11 3.5E-16 120.7 -1.5 220 106-337 50-271 (414)
37 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 5.1E-15 97.5 4.5 139 184-329 4-148 (175)
38 KOG3207 Beta-tubulin folding c 99.0 8.8E-11 1.9E-15 110.0 -0.9 207 103-311 119-340 (505)
39 PF13855 LRR_8: Leucine rich r 98.9 6.6E-10 1.4E-14 78.0 2.7 60 274-333 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 9.4E-10 2E-14 77.2 2.4 59 130-188 2-60 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.8 4.7E-09 1E-13 110.7 5.1 251 105-361 545-810 (889)
42 COG5238 RNA1 Ran GTPase-activa 98.6 1.1E-08 2.5E-13 90.5 1.5 87 104-190 29-133 (388)
43 KOG1859 Leucine-rich repeat pr 98.5 3.1E-09 6.7E-14 105.4 -4.4 180 146-335 102-293 (1096)
44 KOG4658 Apoptotic ATPase [Sign 98.5 6.7E-08 1.5E-12 102.1 4.8 203 104-313 522-733 (889)
45 KOG2120 SCF ubiquitin ligase, 98.5 3.6E-09 7.8E-14 94.8 -4.5 232 89-332 127-374 (419)
46 PF08263 LRRNT_2: Leucine rich 98.5 1.6E-07 3.5E-12 60.5 4.1 39 58-96 2-43 (43)
47 KOG4579 Leucine-rich repeat (L 98.5 1.2E-08 2.6E-13 81.4 -1.7 10 156-165 30-39 (177)
48 KOG1859 Leucine-rich repeat pr 98.5 7.3E-09 1.6E-13 102.8 -3.6 178 170-360 102-294 (1096)
49 KOG2982 Uncharacterized conser 98.5 4.2E-08 9.1E-13 88.1 0.9 84 250-335 200-291 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.3 3.6E-07 7.7E-12 81.2 3.1 235 125-361 26-319 (388)
51 KOG2120 SCF ubiquitin ligase, 98.2 2E-08 4.4E-13 90.1 -6.6 85 106-190 186-273 (419)
52 KOG4579 Leucine-rich repeat (L 98.2 2E-07 4.3E-12 74.5 -1.0 92 105-199 53-144 (177)
53 KOG2982 Uncharacterized conser 98.2 2.8E-07 6E-12 82.9 -0.5 211 127-337 43-265 (418)
54 PRK15386 type III secretion pr 98.2 7.7E-06 1.7E-10 78.5 8.6 135 125-283 48-187 (426)
55 PF12799 LRR_4: Leucine Rich r 98.1 3.2E-06 7E-11 54.6 3.3 36 274-310 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 98.1 4.8E-06 1E-10 53.8 3.6 37 298-335 2-38 (44)
57 PRK15386 type III secretion pr 98.0 1.8E-05 3.9E-10 76.0 8.0 132 105-260 52-188 (426)
58 KOG1644 U2-associated snRNP A' 97.7 7.1E-05 1.5E-09 64.1 5.3 82 202-286 44-126 (233)
59 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.3E-09 63.0 4.8 84 250-335 43-127 (233)
60 KOG3665 ZYG-1-like serine/thre 97.5 5.7E-05 1.2E-09 78.3 3.1 133 201-336 123-265 (699)
61 KOG3665 ZYG-1-like serine/thre 97.3 0.00013 2.9E-09 75.6 3.0 195 129-327 60-281 (699)
62 KOG2739 Leucine-rich acidic nu 96.9 0.00062 1.3E-08 60.7 3.1 68 121-190 35-104 (260)
63 KOG2123 Uncharacterized conser 96.8 4.5E-05 9.7E-10 68.4 -5.0 90 104-197 18-108 (388)
64 PF13306 LRR_5: Leucine rich r 96.8 0.0038 8.2E-08 50.3 6.2 78 106-186 13-90 (129)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00091 2E-08 59.7 2.2 105 220-329 39-151 (260)
66 PF13306 LRR_5: Leucine rich r 96.3 0.007 1.5E-07 48.8 5.1 59 125-185 8-66 (129)
67 KOG4308 LRR-containing protein 96.1 7.8E-05 1.7E-09 74.0 -8.8 60 131-190 89-157 (478)
68 KOG2123 Uncharacterized conser 96.0 0.00063 1.4E-08 61.2 -2.7 85 250-338 20-105 (388)
69 KOG4308 LRR-containing protein 95.8 6.3E-05 1.4E-09 74.7 -11.3 181 107-287 89-304 (478)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0043 9.3E-08 33.3 0.4 18 155-173 2-19 (22)
71 PF00560 LRR_1: Leucine Rich R 95.0 0.0098 2.1E-07 31.9 0.8 11 300-310 3-13 (22)
72 PF13504 LRR_7: Leucine rich r 92.6 0.074 1.6E-06 26.5 1.2 12 275-286 3-14 (17)
73 smart00370 LRR Leucine-rich re 92.5 0.12 2.7E-06 28.7 2.3 20 177-197 2-21 (26)
74 smart00369 LRR_TYP Leucine-ric 92.5 0.12 2.7E-06 28.7 2.3 20 177-197 2-21 (26)
75 KOG0473 Leucine-rich repeat pr 91.5 0.0093 2E-07 52.5 -4.6 81 224-308 42-122 (326)
76 KOG0473 Leucine-rich repeat pr 91.2 0.0055 1.2E-07 53.9 -6.4 82 250-334 43-124 (326)
77 KOG1947 Leucine rich repeat pr 89.6 0.054 1.2E-06 54.1 -2.0 31 293-323 358-389 (482)
78 smart00370 LRR Leucine-rich re 89.4 0.33 7.2E-06 26.9 2.0 15 153-167 2-16 (26)
79 smart00369 LRR_TYP Leucine-ric 89.4 0.33 7.2E-06 26.9 2.0 15 153-167 2-16 (26)
80 PF13516 LRR_6: Leucine Rich r 86.4 0.17 3.8E-06 27.5 -0.4 13 298-310 3-15 (24)
81 KOG3864 Uncharacterized conser 86.3 0.09 2E-06 45.5 -2.3 82 105-186 101-185 (221)
82 KOG1947 Leucine rich repeat pr 82.2 0.95 2.1E-05 45.0 2.6 108 202-309 190-307 (482)
83 KOG3864 Uncharacterized conser 80.4 0.18 3.9E-06 43.7 -2.8 34 202-235 103-136 (221)
84 smart00365 LRR_SD22 Leucine-ri 78.2 1.8 4E-05 24.2 1.7 14 273-286 2-15 (26)
85 smart00368 LRR_RI Leucine rich 71.6 2.8 6.1E-05 23.7 1.5 15 321-335 2-16 (28)
86 smart00364 LRR_BAC Leucine-ric 71.5 2.7 5.9E-05 23.4 1.3 17 178-195 3-19 (26)
87 KOG4242 Predicted myosin-I-bin 70.8 25 0.00054 34.8 8.4 62 129-190 214-281 (553)
88 KOG3763 mRNA export factor TAP 62.0 3 6.5E-05 41.7 0.4 34 250-283 219-254 (585)
89 KOG3763 mRNA export factor TAP 54.9 6.4 0.00014 39.4 1.4 67 271-337 216-286 (585)
90 PF07172 GRP: Glycine rich pro 44.7 52 0.0011 25.0 4.6 7 12-18 3-9 (95)
91 KOG4341 F-box protein containi 40.2 17 0.00037 35.3 1.7 231 105-335 138-415 (483)
92 KOG4341 F-box protein containi 37.7 17 0.00037 35.4 1.3 205 129-333 138-384 (483)
93 TIGR00864 PCC polycystin catio 31.8 31 0.00068 41.6 2.4 33 279-311 1-33 (2740)
94 smart00367 LRR_CC Leucine-rich 31.7 35 0.00076 18.6 1.5 11 153-163 2-12 (26)
95 TIGR00864 PCC polycystin catio 30.4 34 0.00074 41.3 2.3 32 135-166 1-32 (2740)
96 PRK13617 psbV cytochrome c-550 30.0 70 0.0015 27.1 3.6 15 1-16 1-15 (170)
97 KOG4242 Predicted myosin-I-bin 22.9 1.3E+02 0.0028 30.0 4.4 16 322-337 355-370 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-37 Score=335.95 Aligned_cols=271 Identities=30% Similarity=0.495 Sum_probs=165.6
Q ss_pred hHHHHHHHHHHHHcccCCCCCCCCCC-CCCCCcccceeeCCCCCCCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEEC
Q 036320 58 HQAYIALQAWKKVIYSDPNNFTTNWV-GPSVCNYRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHL 136 (404)
Q Consensus 58 ~~~~~aL~~~k~~~~~~~~~~l~~w~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 136 (404)
++|+.||++||+.+ .+|...+.+|+ ..++|.|.||+|.. ..+++.||+++|++.+.++..|..+++|+.|+|
T Consensus 28 ~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~c~w~gv~c~~------~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L 100 (968)
T PLN00113 28 AEELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNN------SSRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100 (968)
T ss_pred HHHHHHHHHHHHhC-CCCcccCCCCCCCCCCCcCcceecCC------CCcEEEEEecCCCccccCChHHhCCCCCCEEEC
Confidence 56889999999998 46777788995 56899999999974 357888888888888877878888888888888
Q ss_pred CCCcCCCCCcccCC-CCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCC
Q 036320 137 NSNRFCGIVPQTLS-NLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTS 214 (404)
Q Consensus 137 s~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~ 214 (404)
++|++++.+|..+. ++++|++|+|++|++++.+|. ..+++|++|+|++|.+++.+|..+.... |++|++++|.+.+
T Consensus 101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 88888777776543 667777777777766655553 3345555555555555555555444433 5555555555555
Q ss_pred CCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhcc
Q 036320 215 MIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIA 294 (404)
Q Consensus 215 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 294 (404)
.+|..+..+++|++|++++|.+.+.+|..+..+. +|++|++++|.+.+.+|..+.++++|++|++++|++++.+|..+.
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 5555555555555555555555544555555544 455555555555544454455555555555555555444444444
Q ss_pred CCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 295 GLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 295 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
++++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 44444444444444444444444444444444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=4.8e-31 Score=285.52 Aligned_cols=234 Identities=30% Similarity=0.487 Sum_probs=154.8
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
+.++++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|+|++|++++.+|..+.++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 44555566666666656666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 184 IRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
+++|.+++.+|..+.... |++|++++|++++.+|..++.+++|++|++++|++.+.+|..+..+. +|++|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCCeec
Confidence 666666666666665544 66666666666666666666666666666666666666666666665 6666666666666
Q ss_pred ccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 263 GCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 263 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
+.+|..+.++++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666665554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=7.2e-28 Score=229.35 Aligned_cols=255 Identities=23% Similarity=0.213 Sum_probs=225.7
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
...+.||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+.+..+.+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 45678999999999988888999999999999999999 67865455566999999999999888889999999999999
Q ss_pred ccccCCCCCChhhhcC--CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHh-hhcccceeEccCCCC
Q 036320 185 RFNEFEGPLPPELFNK--KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVAN-LANSIEELLLINTSI 261 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~-l~~~L~~L~l~~n~l 261 (404)
+.|.|+ .+|..-+.. ++++|+|++|+|+..-...|..+.+|..|.|+.|+++ .+|...++ ++ .|+.|+|..|.|
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~-~L~~LdLnrN~i 233 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLP-KLESLDLNRNRI 233 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcc-hhhhhhccccce
Confidence 999999 777766664 3999999999999888888999999999999999999 66665555 87 999999999999
Q ss_pred cccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCC
Q 036320 262 SGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICN 341 (404)
Q Consensus 262 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~ 341 (404)
.-.---.|.++.+|+.|.|..|+|...-...|-.+.++++|+|+.|+++..-..++.++++|+.|++++|.|..+.++.+
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 84445678899999999999999997777788899999999999999997778889999999999999999999999888
Q ss_pred CcCCCceeeecCCCCCCCCCCC
Q 036320 342 NLTSKGIAYDDRWNCFPEKPFQ 363 (404)
Q Consensus 342 ~l~~~~~~l~l~~N~l~~~~~~ 363 (404)
.....+.+|||++|+|+.++.+
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred hhcccceeEeccccccccCChh
Confidence 8888888899999999988754
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-28 Score=234.56 Aligned_cols=255 Identities=19% Similarity=0.153 Sum_probs=127.0
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
..++.|||+.|.|+.+.-..|..-.++++|+|++|+|+....+.|.++.+|..|.|+.|+++...+..|.+|++|+.|+|
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 44555556555555544444554455555555555555555555555555555555555555444445555555555555
Q ss_pred ccccCCC-----------------------CCCh-hhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCC
Q 036320 185 RFNEFEG-----------------------PLPP-ELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGC 239 (404)
Q Consensus 185 ~~n~l~~-----------------------~~p~-~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 239 (404)
..|+|.- .+.+ .+..+. +++|+|+.|+++..-..++.++++|+.|++++|.|...
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 5555541 1111 122222 45555555555444444444455555555555555444
Q ss_pred ChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCc---hh
Q 036320 240 LPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVP---EG 316 (404)
Q Consensus 240 ~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p---~~ 316 (404)
-+.+|.-.. +|++|+|++|+|+...+..|..+..|++|.|++|.++..--..|..+.+|++|||++|.|+..+. ..
T Consensus 309 h~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 309 HIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred ecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 444444333 45555555555554444444445555555555555543333344455555555555555544332 23
Q ss_pred ccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCC
Q 036320 317 VCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 317 l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~ 360 (404)
|..+++|+.|++.+|+|..+.-..+.--..++.|||.+|.|..+
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 44555555566666655554433222222233466666666544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=7e-26 Score=217.37 Aligned_cols=253 Identities=25% Similarity=0.310 Sum_probs=128.6
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.+..++.|||++|++.. .|..+..-+++-+|+|++|+|..+.-.-|.+++.|-+||||+|++. .+|..+..|..|++|
T Consensus 101 ~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 34445555555555544 3444444555555555555554221123344555555555555554 344444555555555
Q ss_pred EcccccCCCCCChhhhcCC-CceEEccCCccC-CCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCC
Q 036320 183 DIRFNEFEGPLPPELFNKK-LDAIFVNNNRFT-SMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTS 260 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~ 260 (404)
+|++|.+.----..+-.+. |+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+.++. +|+.|+|++|.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccCcCc
Confidence 5555443200000000000 222222221111 224455555566666666666665 5666666665 66666666666
Q ss_pred CcccCCcccCCCCCCCEEEcccCcCC------------------------CCCchhccCCCCCCEeeccCCcCcccCchh
Q 036320 261 ISGCLPPEVGYLYKLRVLDVSLNKLV------------------------GPIPYSIAGLAHLELLNLAHNMMSGIVPEG 316 (404)
Q Consensus 261 l~~~~p~~~~~l~~L~~L~Ls~N~l~------------------------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 316 (404)
|+ .+.-....+.+|++|+||.|+++ ..+|..++.+.+|+.+..++|.+. .+|++
T Consensus 257 it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 257 IT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred ee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence 65 33333344455555555555554 124555555555666666666654 67788
Q ss_pred ccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCC
Q 036320 317 VCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 317 l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~ 362 (404)
++.+.+|+.|.|+.|++...+...--+ ..+.+||++.|.=--.|+
T Consensus 335 lcRC~kL~kL~L~~NrLiTLPeaIHlL-~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLPEAIHLL-PDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhHHHHHhcccccceeechhhhhhc-CCcceeeccCCcCccCCC
Confidence 888888888888888876544433222 233448888886544444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.8e-25 Score=214.48 Aligned_cols=226 Identities=24% Similarity=0.375 Sum_probs=192.3
Q ss_pred CCCcEEEEEcCCCCCCc-cCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCE
Q 036320 103 KIQVVSGIDLNNADIAG-FLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNY 181 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 181 (404)
.+++++.+++..|++.. -+|+.+-.+..|..|||++|++. ..|..+....++-.|+||+|+|..+....|.+|..|-+
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 46778888888888853 37778888999999999999998 67888888888999999999998444455678899999
Q ss_pred EEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCC-CCChhHHHhhhcccceeEccCC
Q 036320 182 LDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFG-GCLPPSVANLANSIEELLLINT 259 (404)
Q Consensus 182 L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~~L~~L~l~~n 259 (404)
|||++|++. .+|+.+.... |++|+|++|.+....-..+-.+++|+.|.+++.+-+ ..+|.++-.+. +|..+|++.|
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~-NL~dvDlS~N 232 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH-NLRDVDLSEN 232 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh-hhhhcccccc
Confidence 999999998 8888888776 999999999876544444566788889999886533 46899999998 9999999999
Q ss_pred CCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCc
Q 036320 260 SISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFC 334 (404)
Q Consensus 260 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 334 (404)
++. .+|+.+-++.+|+.|+||+|+|+ .+.-......+|++|++++|+++ .+|..++.+++|+.|.+.+|+++
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 999 89999999999999999999999 56666777889999999999998 88999999999999999999975
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=8.6e-26 Score=206.76 Aligned_cols=245 Identities=24% Similarity=0.347 Sum_probs=142.3
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.+..++.+++.+|.++. .|++++.+..++.++.++|+++ .+|+.++.+.+|+.|+.++|++. .+|+.++.+-.|+.+
T Consensus 66 nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDL 142 (565)
T ss_pred cccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhh
Confidence 34455556666666554 4445566666666666666665 45555666666666666666665 455555666666666
Q ss_pred EcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCC
Q 036320 183 DIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSI 261 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 261 (404)
+..+|+++ .+|+.++... +..+++.+|++....|..+. |+.|++||...|.++ .+|+.++.+. +|..|++..|+|
T Consensus 143 ~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~-~L~~LyL~~Nki 218 (565)
T KOG0472|consen 143 DATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLE-SLELLYLRRNKI 218 (565)
T ss_pred hccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchh-hhHHHHhhhccc
Confidence 66666665 5555555543 66666666666654444333 566666666666555 5666666665 566666666666
Q ss_pred cccCCcccCCCCCCCEEEcccCcCCCCCchhc-cCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCC
Q 036320 262 SGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSI-AGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGIC 340 (404)
Q Consensus 262 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 340 (404)
. .+| +|.++..|++|+++.|+|+ .+|... .++.++..|||+.|+++ ..|..++-+.+|++||+++|.|++.++.+
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCccc
Confidence 5 444 5566666666666666666 444333 35666666666666665 55666666666666666666666665555
Q ss_pred CCcCCCceeeecCCCCCCCC
Q 036320 341 NNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 341 ~~l~~~~~~l~l~~N~l~~~ 360 (404)
..+ .+++|-+.+|.+..+
T Consensus 295 gnl--hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 295 GNL--HLKFLALEGNPLRTI 312 (565)
T ss_pred ccc--eeeehhhcCCchHHH
Confidence 544 334455555555433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=3.6e-25 Score=202.71 Aligned_cols=260 Identities=23% Similarity=0.312 Sum_probs=225.3
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
.++.++++.|.+... .+.+.++..|.+|++.+|+++ ..|.+++.+..++.|+.++|++. .+|..+..+.+|+.++.+
T Consensus 46 ~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 366789999998774 445889999999999999999 67888999999999999999998 889999999999999999
Q ss_pred cccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCccc
Q 036320 186 FNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGC 264 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 264 (404)
+|.+. .+|+.++... ++.++..+|+++. .|..+..+.++..+++.+|++. .+|+..-++. .|++||...|.+. .
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~-~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMK-RLKHLDCNSNLLE-T 197 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHHHH-HHHhcccchhhhh-c
Confidence 99999 8888888866 9999999999985 6778888999999999999999 6666666687 9999999999998 8
Q ss_pred CCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhc-cCCCCCcEEeccCCcCcccCCCCCCc
Q 036320 265 LPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGV-CLLPNLSNFTFSYNFFCEEEGICNNL 343 (404)
Q Consensus 265 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~~~~~~~~~l 343 (404)
+|+.++.+.+|+.|+|..|+|. .+| .|.++..|++|.+..|+|. .+|... ..+++|..||+..|+++..+.....+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clL 274 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL 274 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHh
Confidence 8999999999999999999999 677 7999999999999999998 566555 48999999999999999877654444
Q ss_pred CCCceeeecCCCCCCCCCCCCCccc--ccccccCCC
Q 036320 344 TSKGIAYDDRWNCFPEKPFQRSNKV--CEPVLEHPV 377 (404)
Q Consensus 344 ~~~~~~l~l~~N~l~~~~~~~~~~~--~~~~~~n~~ 377 (404)
.. +.+||+++|.|+++|+...... ...+.|||+
T Consensus 275 rs-L~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPl 309 (565)
T KOG0472|consen 275 RS-LERLDLSNNDISSLPYSLGNLHLKFLALEGNPL 309 (565)
T ss_pred hh-hhhhcccCCccccCCcccccceeeehhhcCCch
Confidence 43 3349999999999998776552 235578886
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.9e-20 Score=192.93 Aligned_cols=227 Identities=19% Similarity=0.340 Sum_probs=163.9
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
+.+.|++++++++. +|..+. +.|+.|+|++|+++. +|..+. .+|++|++++|+++ .+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 45778888888876 555443 578888888888884 555443 57888899888888 4565443 478888888
Q ss_pred cccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccC
Q 036320 186 FNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCL 265 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 265 (404)
+|+++ .+|..+. ..|++|++++|+++. +|..+. .+|+.|++++|+++ .+|..+. .+|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~-s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP-SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh-CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-C
Confidence 88888 7777654 358888888888884 565443 47888888888888 4665443 268888888888884 4
Q ss_pred CcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCC
Q 036320 266 PPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTS 345 (404)
Q Consensus 266 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 345 (404)
|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+|+ .+|..+ .++|+.|++++|.|+..++... .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~---~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP---A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH---H
Confidence 5443 3678888888888884 665553 68888888888887 566655 3578888888888886554332 2
Q ss_pred CceeeecCCCCCCCCCC
Q 036320 346 KGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 346 ~~~~l~l~~N~l~~~~~ 362 (404)
.++.|++++|+|.++|-
T Consensus 389 sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 389 ALQIMQASRNNLVRLPE 405 (754)
T ss_pred HHHHHhhccCCcccCch
Confidence 34558888888887764
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=4.1e-21 Score=175.95 Aligned_cols=267 Identities=21% Similarity=0.173 Sum_probs=185.9
Q ss_pred CcccceeeCCCCCCCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcC-cccC
Q 036320 88 CNYRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSN-NRFV 166 (404)
Q Consensus 88 C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~ 166 (404)
|+-.|.+-.+.. -....++|+|+.|+|+.+.+.+|+.+++|+.|||++|.|+.+-|++|.++.+|..|-+.+ |+|+
T Consensus 53 Cr~~GL~eVP~~---LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 53 CRGKGLTEVPAN---LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ccCCCcccCccc---CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 555555444322 235678999999999998889999999999999999999999999999999888776666 9999
Q ss_pred CCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCC--------
Q 036320 167 GPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFG-------- 237 (404)
Q Consensus 167 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------- 237 (404)
......|.+|..|+.|.+.-|++.-.....+.... +..|.+.+|.+....-..|..+.+++.+.+..|.+-
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 77667899999999999999999833334444444 888888999888655557888888888888777621
Q ss_pred ----CCChhHHHhhh---------------------ccccee--Ec-cCCCCcccCC-cccCCCCCCCEEEcccCcCCCC
Q 036320 238 ----GCLPPSVANLA---------------------NSIEEL--LL-INTSISGCLP-PEVGYLYKLRVLDVSLNKLVGP 288 (404)
Q Consensus 238 ----~~~p~~l~~l~---------------------~~L~~L--~l-~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ 288 (404)
...|..++... ..++.+ .+ +.+...+.-| ..|+++++|+.|+|++|+|+++
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence 00111111110 011111 11 1111222222 4567788888888888888877
Q ss_pred CchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCC
Q 036320 289 IPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCF 357 (404)
Q Consensus 289 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l 357 (404)
-+.+|.+..++++|.|..|+|...-...|.++..|+.|+|.+|+|+...|..++-...+..|+|-.|.+
T Consensus 290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 290 EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 777788888888888888888755566777778888888888888877775444333333466655544
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=5.3e-19 Score=181.36 Aligned_cols=217 Identities=21% Similarity=0.267 Sum_probs=117.4
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++.|++.+|+++. +|. ..++|++|++++|+|+. +|.. .++|++|++++|.++ .+|.. ..+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence 367788888888876 443 24778888888888874 4532 356777777777776 33432 245666777
Q ss_pred ccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCccc
Q 036320 185 RFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGC 264 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 264 (404)
++|+++ .+|.. ...|++|++++|++++ +|.. ..+|+.|++++|+++ .+|. ++.+|++|++++|+|++
T Consensus 290 s~N~Lt-~LP~~--p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 290 FGNQLT-SLPVL--PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLAS- 356 (788)
T ss_pred cCCccc-ccccc--ccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc----cccccceEecCCCccCC-
Confidence 777766 45542 1347777777777665 2321 124555566666655 3442 12256666666666653
Q ss_pred CCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcC
Q 036320 265 LPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLT 344 (404)
Q Consensus 265 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~ 344 (404)
+|.. ..+|+.|++++|+|+ .+|.. ..+|+.|++++|+|++ +|.. .++|+.|++++|+|++++....
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l~~--- 422 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPMLPS--- 422 (788)
T ss_pred CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcchh---
Confidence 3322 234555555555555 23432 2345555555555552 3321 2345555555555554322111
Q ss_pred CCceeeecCCCCCCCCC
Q 036320 345 SKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 345 ~~~~~l~l~~N~l~~~~ 361 (404)
.+..|++++|+|+.+|
T Consensus 423 -~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 423 -GLLSLSVYRNQLTRLP 438 (788)
T ss_pred -hhhhhhhccCcccccC
Confidence 1222555555555554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=8.2e-22 Score=197.17 Aligned_cols=243 Identities=23% Similarity=0.323 Sum_probs=141.0
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
..++.+|++.|++.+ +|..++.+.+|+.+.+.+|+++ .+|..+...++|+.|++.+|.+. .+|.....++.|++|+|
T Consensus 241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 345555555555555 3455555666666666666664 45555555556666666666665 45555666677777777
Q ss_pred ccccCCCCCChhhhcCC---CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCC
Q 036320 185 RFNEFEGPLPPELFNKK---LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSI 261 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 261 (404)
..|++. .+|+.+.... ++.|+.+.|.+.......=..++.|+.|++.+|.+++..-+.+-... .|+.|+|++|++
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRL 395 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeeccccc
Confidence 777765 5665443311 44444444444322211112334566667777776655555555555 677777777776
Q ss_pred cccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCC
Q 036320 262 SGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICN 341 (404)
Q Consensus 262 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~ 341 (404)
.......+.++..|++|+||+|+++ .+|..+..+..|++|...+|+|. ..| .+..++.|+.+|++.|.|+...-..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~- 471 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE- 471 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh-
Confidence 6444455666667777777777776 56666667777777777777766 555 4666677777777777766532110
Q ss_pred CcC-CCceeeecCCCC
Q 036320 342 NLT-SKGIAYDDRWNC 356 (404)
Q Consensus 342 ~l~-~~~~~l~l~~N~ 356 (404)
.++ ..+++||+++|.
T Consensus 472 ~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hCCCcccceeeccCCc
Confidence 111 234447777775
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=7.7e-20 Score=188.40 Aligned_cols=229 Identities=23% Similarity=0.383 Sum_probs=180.4
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++.|++++|+++. +|..+. .+|++|++++|+++ .+|..+. ..|+.|+|++|++. .+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 578999999999996 565443 58999999999999 4676553 47999999999998 6776654 58999999
Q ss_pred ccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCccc
Q 036320 185 RFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGC 264 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 264 (404)
++|+++ .+|..+. ..|++|++++|++++ +|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|.+++
T Consensus 270 s~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 270 FHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS- 339 (754)
T ss_pred cCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-
Confidence 999999 6887664 369999999999986 454443 47999999999998 5676543 389999999999985
Q ss_pred CCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCC---CC
Q 036320 265 LPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGI---CN 341 (404)
Q Consensus 265 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~---~~ 341 (404)
+|..+ .++|+.|++++|+|+ .+|..+. ++|+.|++++|+|+ .+|..+. ..|+.|++++|+|++.+.. +.
T Consensus 340 LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~ 411 (754)
T PRK15370 340 LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFR 411 (754)
T ss_pred CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHh
Confidence 67655 379999999999998 5776653 68999999999998 5666553 3699999999999865432 22
Q ss_pred CcCCCceeeecCCCCCCCC
Q 036320 342 NLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 342 ~l~~~~~~l~l~~N~l~~~ 360 (404)
.....+..+++.+|.|+..
T Consensus 412 ~~~~~l~~L~L~~Npls~~ 430 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFSER 430 (754)
T ss_pred hcCCCccEEEeeCCCccHH
Confidence 2222344599999999744
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=6e-19 Score=180.97 Aligned_cols=217 Identities=23% Similarity=0.271 Sum_probs=171.4
Q ss_pred EEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEccc
Q 036320 107 VSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRF 186 (404)
Q Consensus 107 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 186 (404)
-..|++++++++. +|+.+. .+|+.|++++|+++. +|. ..++|++|++++|+++ .+|. ..++|+.|++++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~---lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC---cccccceeeccC
Confidence 4568999999985 777665 489999999999995 564 3588999999999999 4564 247899999999
Q ss_pred ccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCC
Q 036320 187 NEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLP 266 (404)
Q Consensus 187 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p 266 (404)
|.++ .+|... ..|+.|++++|+++. +|. ..++|+.|++++|+++ .+|. ++.+|+.|++++|++++ +|
T Consensus 272 N~L~-~Lp~lp--~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPALP--SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhch--hhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCC----CcccccccccccCcccc-cc
Confidence 9998 676532 349999999999985 443 2478999999999998 4554 23378899999999984 55
Q ss_pred cccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCC
Q 036320 267 PEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSK 346 (404)
Q Consensus 267 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 346 (404)
.. ..+|++|+|++|+|+ .+|.. ..+|+.|++++|+|+ .+|.. ..+|+.|++++|+|++.++.. ..
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~----s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVLP----SE 403 (788)
T ss_pred cc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCcc----cC
Confidence 42 358999999999999 46653 357889999999998 46653 357999999999999755433 33
Q ss_pred ceeeecCCCCCCCCCC
Q 036320 347 GIAYDDRWNCFPEKPF 362 (404)
Q Consensus 347 ~~~l~l~~N~l~~~~~ 362 (404)
+..|++++|.|+++|.
T Consensus 404 L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 404 LKELMVSGNRLTSLPM 419 (788)
T ss_pred CCEEEccCCcCCCCCc
Confidence 4559999999999874
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=2.1e-18 Score=188.53 Aligned_cols=249 Identities=21% Similarity=0.196 Sum_probs=150.9
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
...+++.|++.++.+.. ++..+..+++|+.|+|+++.....+|. ++.+++|++|+|++|.....+|..+.++++|++|
T Consensus 609 ~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 45677778888877764 555667788888888877654445664 7777888888888876556777778888888888
Q ss_pred EcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHH-----------------
Q 036320 183 DIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVA----------------- 245 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~----------------- 245 (404)
++++|...+.+|..+...+|++|++++|.....+|.. ..+|++|++++|.+. .+|..+.
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhc
Confidence 8887654447776664445778887777655444432 346677777777665 4443220
Q ss_pred ------------hhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccC
Q 036320 246 ------------NLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIV 313 (404)
Q Consensus 246 ------------~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 313 (404)
....+|+.|++++|...+.+|..+.++++|+.|+|++|..-+.+|..+ .+++|+.|++++|..-..+
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 111245566666665555566666666666666666654333455443 4566666666665433333
Q ss_pred chhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCC-CCCCCCCC
Q 036320 314 PEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRW-NCFPEKPF 362 (404)
Q Consensus 314 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~-N~l~~~~~ 362 (404)
|.. ..+|+.|+|++|.|+..+.....+.. +..|++++ |.+..+|.
T Consensus 842 p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~-L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 842 PDI---STNISDLNLSRTGIEEVPWWIEKFSN-LSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred ccc---ccccCEeECCCCCCccChHHHhcCCC-CCEEECCCCCCcCccCc
Confidence 332 24566666666666644332222222 33366665 55665554
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=6.4e-21 Score=174.66 Aligned_cols=265 Identities=20% Similarity=0.191 Sum_probs=199.3
Q ss_pred EEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEccc-cc
Q 036320 110 IDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRF-NE 188 (404)
Q Consensus 110 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~ 188 (404)
.|.++-+++. +|..+- ..-..++|..|.|+.+.+.+|+.+++|+.|||++|+|+.+-|++|.++++|..|-+.+ |+
T Consensus 51 VdCr~~GL~e-VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTE-VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCccc-CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 4555556655 454332 4567899999999988889999999999999999999999999999999988877666 99
Q ss_pred CCCCCChhhhc-CC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChh-HHHhhhcccceeEccCCCCc---
Q 036320 189 FEGPLPPELFN-KK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPP-SVANLANSIEELLLINTSIS--- 262 (404)
Q Consensus 189 l~~~~p~~~~~-~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~--- 262 (404)
|+ .+|...+. .. ++.|.+.-|++.-...+.|..++++..|.+..|.+. .++. .+..+. .++.+.+..|.+-
T Consensus 128 I~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~-~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 128 IT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLA-AIKTLHLAQNPFICDC 204 (498)
T ss_pred hh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchh-ccchHhhhcCcccccc
Confidence 98 78877765 33 999999999999888889999999999999999988 5555 555666 8888888887722
Q ss_pred ---------ccCCcccCCCCCCCEEEcccCc-------------------------CCCCCc-hhccCCCCCCEeeccCC
Q 036320 263 ---------GCLPPEVGYLYKLRVLDVSLNK-------------------------LVGPIP-YSIAGLAHLELLNLAHN 307 (404)
Q Consensus 263 ---------~~~p~~~~~l~~L~~L~Ls~N~-------------------------l~~~~p-~~l~~l~~L~~L~L~~N 307 (404)
...|.++++..-..-..+.+++ ..+..| ..|..+++|+.|+|++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 1122233333222222222222 222333 46888999999999999
Q ss_pred cCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCC---CC-CcccccccccCCCccc
Q 036320 308 MMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPF---QR-SNKVCEPVLEHPVECF 380 (404)
Q Consensus 308 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~---~~-~~~~~~~~~~n~~~c~ 380 (404)
+|+++-+.+|....+++.|.|..|+|..+....+.-...++.|+|.+|+|+.+-. +. .......+.+||+.|+
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 9999999999999999999999999987766544444445559999999997743 22 2233346689999885
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=5.3e-20 Score=174.49 Aligned_cols=232 Identities=24% Similarity=0.228 Sum_probs=145.9
Q ss_pred CCcEEEEEcCCCCCCcc----CcccccCCCCCCEEECCCCcCCC------CCcccCCCCCCCCEEeCcCcccCCCCCccc
Q 036320 104 IQVVSGIDLNNADIAGF----LPDELGLLSDLALIHLNSNRFCG------IVPQTLSNLTLLYELDLSNNRFVGPFPNVV 173 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 173 (404)
...++.|+++++.+++. ++..+...+.+++++++++.+.+ .++..+..+++|++|++++|.+.+..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 34577788888877442 45556667778888888777662 123455667788888888888775555555
Q ss_pred CCCCC---CCEEEcccccCCCC----CChhhhcC--CCceEEccCCccCCC----CcccccCCCCcceeccccCcCCCC-
Q 036320 174 LSLPM---LNYLDIRFNEFEGP----LPPELFNK--KLDAIFVNNNRFTSM----IPQNFGSNNSASVLVIANNKFGGC- 239 (404)
Q Consensus 174 ~~l~~---L~~L~L~~n~l~~~----~p~~~~~~--~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~- 239 (404)
..+.+ |++|++++|.+++. +...+... .|+.|++++|.+++. +...+..+.+|++|++++|.+++.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 44444 88888888877631 11222222 378888888877732 233455666788888888777642
Q ss_pred ---ChhHHHhhhcccceeEccCCCCccc----CCcccCCCCCCCEEEcccCcCCCCCchhcc-----CCCCCCEeeccCC
Q 036320 240 ---LPPSVANLANSIEELLLINTSISGC----LPPEVGYLYKLRVLDVSLNKLVGPIPYSIA-----GLAHLELLNLAHN 307 (404)
Q Consensus 240 ---~p~~l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~L~~N 307 (404)
++..+.... +|++|++++|.+++. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|
T Consensus 182 ~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 182 IRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHhCC-CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 223333443 678888888777632 334455677788888888877743222222 1367788888888
Q ss_pred cCcc----cCchhccCCCCCcEEeccCCcCccc
Q 036320 308 MMSG----IVPEGVCLLPNLSNFTFSYNFFCEE 336 (404)
Q Consensus 308 ~l~~----~~p~~l~~l~~L~~L~l~~N~l~~~ 336 (404)
.+++ .+...+..+++|+++++++|.++..
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 7762 2334455567778888888887754
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=1.8e-17 Score=181.26 Aligned_cols=241 Identities=21% Similarity=0.193 Sum_probs=181.4
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.+.+++.|+|+++...+.+|. ++.+++|++|+|++|.....+|..+.++++|++|++++|..-+.+|..+ ++++|++|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence 467899999998876566664 7889999999999987667889889999999999999976555777655 78889999
Q ss_pred EcccccCCCCCChhhhcCCCceEEccCCccCCCCcccc------------------------------cCCCCcceeccc
Q 036320 183 DIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNF------------------------------GSNNSASVLVIA 232 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~------------------------------~~l~~L~~L~l~ 232 (404)
++++|...+.+|.. ..+|++|++++|.+.. +|..+ ...++|+.|+++
T Consensus 710 ~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 710 NLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred eCCCCCCccccccc--cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 99888655555542 2347788888777653 33221 123578888898
Q ss_pred cCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCccc
Q 036320 233 NNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGI 312 (404)
Q Consensus 233 ~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 312 (404)
+|...+.+|..+..+. +|+.|++++|..-+.+|..+ .+++|+.|+|++|.....+|.. ..+|+.|+|++|.|. .
T Consensus 787 ~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 787 DIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-E 860 (1153)
T ss_pred CCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-c
Confidence 8877778999999998 99999999986555777665 6899999999997655456643 467899999999998 6
Q ss_pred CchhccCCCCCcEEeccC-CcCcccCCCCCCcCCCceeeecCCC
Q 036320 313 VPEGVCLLPNLSNFTFSY-NFFCEEEGICNNLTSKGIAYDDRWN 355 (404)
Q Consensus 313 ~p~~l~~l~~L~~L~l~~-N~l~~~~~~~~~l~~~~~~l~l~~N 355 (404)
+|.++..+++|+.|++++ |.+....+....+.. +..++++++
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~-L~~L~l~~C 903 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH-LETVDFSDC 903 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccC-CCeeecCCC
Confidence 888899999999999988 556665443333332 333666655
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.3e-19 Score=171.87 Aligned_cols=251 Identities=22% Similarity=0.195 Sum_probs=185.6
Q ss_pred EEEcCCCCCCc-cCcccccCCCCCCEEECCCCcCCCC----CcccCCCCCCCCEEeCcCcccCC------CCCcccCCCC
Q 036320 109 GIDLNNADIAG-FLPDELGLLSDLALIHLNSNRFCGI----VPQTLSNLTLLYELDLSNNRFVG------PFPNVVLSLP 177 (404)
Q Consensus 109 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~ 177 (404)
.|+|.++.+++ .....+..+..|+.|+++++.++.. ++..+...+.|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 47788888873 4456677788899999999998643 45566778889999999998873 2345677899
Q ss_pred CCCEEEcccccCCCCCChhhhc-CC---CceEEccCCccCC----CCcccccCC-CCcceeccccCcCCCCC----hhHH
Q 036320 178 MLNYLDIRFNEFEGPLPPELFN-KK---LDAIFVNNNRFTS----MIPQNFGSN-NSASVLVIANNKFGGCL----PPSV 244 (404)
Q Consensus 178 ~L~~L~L~~n~l~~~~p~~~~~-~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~----p~~l 244 (404)
+|++|++++|.+.+..+..+.. .. |++|++++|++++ .+...+..+ ++|+.|++++|.+++.. ...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999999998655554433 22 9999999999884 233345666 89999999999998533 3334
Q ss_pred HhhhcccceeEccCCCCccc----CCcccCCCCCCCEEEcccCcCCCCC----chhccCCCCCCEeeccCCcCcccCchh
Q 036320 245 ANLANSIEELLLINTSISGC----LPPEVGYLYKLRVLDVSLNKLVGPI----PYSIAGLAHLELLNLAHNMMSGIVPEG 316 (404)
Q Consensus 245 ~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~p~~ 316 (404)
..+. +|++|++++|.+++. ++..+..+++|++|++++|.+++.. ...+..+++|++|++++|.+++.....
T Consensus 162 ~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 162 RANR-DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HhCC-CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 4444 799999999999842 3445566789999999999997443 345667889999999999998643333
Q ss_pred cc-----CCCCCcEEeccCCcCcc--cC---CCCCCcCCCceeeecCCCCCCCCC
Q 036320 317 VC-----LLPNLSNFTFSYNFFCE--EE---GICNNLTSKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 317 l~-----~l~~L~~L~l~~N~l~~--~~---~~~~~l~~~~~~l~l~~N~l~~~~ 361 (404)
+. ..+.|+.|++++|.+++ .. ..+... ..++++|+++|.++..+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHH
Confidence 32 23799999999999973 11 112222 33455999999999775
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=4.1e-20 Score=151.55 Aligned_cols=177 Identities=27% Similarity=0.455 Sum_probs=125.1
Q ss_pred CCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceec
Q 036320 152 LTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLV 230 (404)
Q Consensus 152 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 230 (404)
+.....|.||+|.++ .+|..+..+.+|+.|++++|+++ .+|..+.... |++|+++-|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 344444555555555 44445555555555555555555 5555555443 555555555554 4677888888899999
Q ss_pred cccCcCC-CCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcC
Q 036320 231 IANNKFG-GCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMM 309 (404)
Q Consensus 231 l~~n~l~-~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 309 (404)
+.+|++. ..+|..|+.+. .|+.|++++|++. .+|..++++++|+.|.+..|.+- .+|..++.+..|++|.+++|++
T Consensus 109 ltynnl~e~~lpgnff~m~-tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMT-TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHH-HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 9888876 45788899888 8999999999998 88888999999999999999988 7899999999999999999999
Q ss_pred cccCchhccCCC---CCcEEeccCCcCcc
Q 036320 310 SGIVPEGVCLLP---NLSNFTFSYNFFCE 335 (404)
Q Consensus 310 ~~~~p~~l~~l~---~L~~L~l~~N~l~~ 335 (404)
+ .+|..++.+. +=+.+.+.+|....
T Consensus 186 ~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 186 T-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred e-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 8 5555555442 22334445555443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=6.1e-20 Score=183.93 Aligned_cols=264 Identities=21% Similarity=0.262 Sum_probs=188.8
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++.|+.+.|.++...+. ..-.+|+++++++|++++ +|.+++.+.+|+.|+..+|+++ .+|..+..+.+|++|.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 4556666666666533221 123567777777777774 5577777777777777777775 66666777777777777
Q ss_pred ccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCC-cceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 185 RFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNS-ASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
.+|.+. .+|......+ |++|+|..|++....+..+..... |+.|+.+.|++. ..|..=......|+.|++.+|.++
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccc
Confidence 777777 6666666544 777777777776544433333333 666666666666 344322222237899999999999
Q ss_pred ccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCC
Q 036320 263 GCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNN 342 (404)
Q Consensus 263 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 342 (404)
+..-..+.+.++|+.|+|++|++.......+.++..|++|+|++|+++ .+|..+..++.|+.|...+|+|...+ ....
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~ 450 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQ 450 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhh
Confidence 887788899999999999999999555567888999999999999998 88899999999999999999998665 5444
Q ss_pred cCCCceeeecCCCCCCCCCC----CCCcccccccccCCC
Q 036320 343 LTSKGIAYDDRWNCFPEKPF----QRSNKVCEPVLEHPV 377 (404)
Q Consensus 343 l~~~~~~l~l~~N~l~~~~~----~~~~~~~~~~~~n~~ 377 (404)
+.. ++++|++.|.|+..-. ..+.....++-||++
T Consensus 451 l~q-L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 LPQ-LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCc-ceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 444 4459999999986643 224455567778874
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2e-19 Score=147.54 Aligned_cols=162 Identities=28% Similarity=0.513 Sum_probs=102.0
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.+.+++.|.|++|.++. +|+.++.+.+|+.|++.+|++. .+|.+++.+++|++|+++-|++. .+|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 35667777788887766 4556777788888888888877 56777778888888888877776 677777778888888
Q ss_pred EcccccCCC-CCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCC
Q 036320 183 DIRFNEFEG-PLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSI 261 (404)
Q Consensus 183 ~L~~n~l~~-~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 261 (404)
||.+|++.. .+|..++ .+..|+.|+++.|.+. .+|..+++++ +|+.|.+..|++
T Consensus 108 dltynnl~e~~lpgnff-----------------------~m~tlralyl~dndfe-~lp~dvg~lt-~lqil~lrdndl 162 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFF-----------------------YMTTLRALYLGDNDFE-ILPPDVGKLT-NLQILSLRDNDL 162 (264)
T ss_pred hccccccccccCCcchh-----------------------HHHHHHHHHhcCCCcc-cCChhhhhhc-ceeEEeeccCch
Confidence 887777652 3444444 4444444455555444 4455555554 555555555554
Q ss_pred cccCCcccCCCCCCCEEEcccCcCCCCCchhcc
Q 036320 262 SGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIA 294 (404)
Q Consensus 262 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 294 (404)
- .+|..++.++.|++|++.+|+++ .+|..++
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 4 44555555555555555555555 3444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.66 E-value=8.8e-16 Score=157.44 Aligned_cols=154 Identities=28% Similarity=0.447 Sum_probs=129.4
Q ss_pred CCchHHHHHHHHHHHHcccCCCCCCCCCCCCCCC-----cccceeeCCCCCCCCCCcEEEEEcCCCCCCccCcccccCCC
Q 036320 55 PKLHQAYIALQAWKKVIYSDPNNFTTNWVGPSVC-----NYRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLLS 129 (404)
Q Consensus 55 ~~~~~~~~aL~~~k~~~~~~~~~~l~~w~~~~~C-----~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~ 129 (404)
....+|..||+.+|..+. ++. ..+|.+. +| .|.||.|..... .....++.|+|++|.+.|.+|..+..++
T Consensus 368 ~t~~~~~~aL~~~k~~~~-~~~--~~~W~g~-~C~p~~~~w~Gv~C~~~~~-~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG-LPL--RFGWNGD-PCVPQQHPWSGADCQFDST-KGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred ccCchHHHHHHHHHHhcC-Ccc--cCCCCCC-CCCCcccccccceeeccCC-CCceEEEEEECCCCCccccCCHHHhCCC
Confidence 335668999999999884 332 2479764 45 699999963211 1123689999999999999999999999
Q ss_pred CCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcC--CCceEEc
Q 036320 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNK--KLDAIFV 207 (404)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~--~L~~L~l 207 (404)
+|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|..+... .+..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988763 3677888
Q ss_pred cCCccC
Q 036320 208 NNNRFT 213 (404)
Q Consensus 208 ~~n~l~ 213 (404)
.+|...
T Consensus 523 ~~N~~l 528 (623)
T PLN03150 523 TDNAGL 528 (623)
T ss_pred cCCccc
Confidence 877644
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.51 E-value=8.2e-16 Score=147.30 Aligned_cols=195 Identities=26% Similarity=0.421 Sum_probs=150.9
Q ss_pred CCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEE
Q 036320 127 LLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIF 206 (404)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~ 206 (404)
.+..-...|++.|++. .+|..+..+..|+.+.|++|.+. .+|..+.++..|.+|||+.|+++ .+|..++...|+.|-
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEE
Confidence 3555567788888887 67777777788888888888887 77888888888888888888888 888888888888888
Q ss_pred ccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCC
Q 036320 207 VNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLV 286 (404)
Q Consensus 207 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 286 (404)
+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+. +|+.|.+..|++. .+|..+. .-.|..||+|+|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee
Confidence 8888887 46777788888888888888887 7888888887 8888888888887 5666666 346778888888888
Q ss_pred CCCchhccCCCCCCEeeccCCcCcccCchhccCCCC---CcEEeccCC
Q 036320 287 GPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPN---LSNFTFSYN 331 (404)
Q Consensus 287 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~l~~N 331 (404)
.+|-.|.++..|++|-|.+|-+. ..|..++..-+ -++|+..-.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 77888888888888888888887 45555543322 244555444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.42 E-value=8.7e-15 Score=140.37 Aligned_cols=178 Identities=26% Similarity=0.402 Sum_probs=156.4
Q ss_pred CCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCccee
Q 036320 151 NLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVL 229 (404)
Q Consensus 151 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L 229 (404)
.++.-...||+.|++. .+|..+..+..|+.+.|..|.+. .+|..+.... |.+|+++.|+++. +|..+..+ -|+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~l-pLkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDL-PLKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcC-cceeE
Confidence 4555668899999998 88999999999999999999998 8999998887 9999999999984 66666665 48999
Q ss_pred ccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcC
Q 036320 230 VIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMM 309 (404)
Q Consensus 230 ~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 309 (404)
.+++|+++ .+|+.++.+. .|..|+.+.|.+. .+|..+.++.+|+.|.+..|++. .+|+.+..+ .|..||+++|+|
T Consensus 149 i~sNNkl~-~lp~~ig~~~-tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLP-TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEecCccc-cCCcccccch-hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 99999998 8999999666 8999999999998 78888999999999999999999 677778755 488999999999
Q ss_pred cccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 310 SGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 310 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
. .+|-.|..|.+|++|-|.+|.++..+.
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 8 889999999999999999999987654
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=3.4e-13 Score=131.91 Aligned_cols=197 Identities=30% Similarity=0.457 Sum_probs=121.3
Q ss_pred EEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCC-CCCEEeCcCcccCCCCCcccCCCCCCCEEEcccc
Q 036320 109 GIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLT-LLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFN 187 (404)
Q Consensus 109 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 187 (404)
.+++..+.+...+. .+..++.++.|++.+|.++. ++.....+. +|++|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666633222 24455677777777777773 444455553 7777777777777 45556777777777777777
Q ss_pred cCCCCCChhh-hcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCC
Q 036320 188 EFEGPLPPEL-FNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLP 266 (404)
Q Consensus 188 ~l~~~~p~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p 266 (404)
+++ .+|... ....|+.|++++|+++. +|........|++|.+++|.+. .++..+..+. ++..+.+.+|++. .++
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~-~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLK-NLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcc-cccccccCCceee-ecc
Confidence 777 666655 33337777777777764 4444344455667777766433 3455555555 6666666666665 234
Q ss_pred cccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCch
Q 036320 267 PEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPE 315 (404)
Q Consensus 267 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 315 (404)
..+..++++++|++++|+++ .++. +..+.+++.|++++|.+....+.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 55566666666666666666 3333 56666666666666666654443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=3.6e-13 Score=131.72 Aligned_cols=196 Identities=33% Similarity=0.417 Sum_probs=150.4
Q ss_pred EEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCC-CCCEEEcccccCCCCCChhhhcCC-CceEEccCC
Q 036320 133 LIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLP-MLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNN 210 (404)
Q Consensus 133 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n 210 (404)
.+++..|.+...+ ..+..++.++.|++.+|.++ .++.....++ +|+.|++++|++. .+|..+..+. |+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5788888774332 23556688899999999988 5666666664 8999999999988 7776666655 999999999
Q ss_pred ccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCc
Q 036320 211 RFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIP 290 (404)
Q Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 290 (404)
++.. ++...+..++|+.|++++|++. .+|..+.... .|+++++++|.+. ..+..+..+.++..+.+.+|++. .++
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~-~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhh-hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 9885 4444447788899999999988 6777655554 6889999998644 45667788888888888888887 446
Q ss_pred hhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 291 YSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 291 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
..+..+++++.|++++|+++.. +. +..+.+++.|++++|.+....+
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 7778888899999999998843 33 7788889999999988876654
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=1.9e-11 Score=125.63 Aligned_cols=106 Identities=25% Similarity=0.355 Sum_probs=74.3
Q ss_pred cceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccC
Q 036320 251 IEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSY 330 (404)
Q Consensus 251 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 330 (404)
++.|+|++|.+.+.+|..+..+++|+.|+|++|+++|.+|..+..+++|+.|+|++|+++|.+|+.++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcCcccCCCCC-CcCCCceeeecCCCC
Q 036320 331 NFFCEEEGICN-NLTSKGIAYDDRWNC 356 (404)
Q Consensus 331 N~l~~~~~~~~-~l~~~~~~l~l~~N~ 356 (404)
|.++|.+|... .....+..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77777776422 111122335666654
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.23 E-value=1.8e-12 Score=118.02 Aligned_cols=228 Identities=19% Similarity=0.196 Sum_probs=138.8
Q ss_pred CCcEEEEEcCCCCCCc----cCcccccCCCCCCEEECCCCc---CCCCCcc-------cCCCCCCCCEEeCcCcccCCCC
Q 036320 104 IQVVSGIDLNNADIAG----FLPDELGLLSDLALIHLNSNR---FCGIVPQ-------TLSNLTLLYELDLSNNRFVGPF 169 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~-------~l~~l~~L~~L~Ls~n~l~~~~ 169 (404)
...++.|+|++|.+.. .+...+.+.++|+..++++-. ....+|. .+.+.++|++||||+|.|.-..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4578999999999864 355667788899999887642 2223443 3445679999999999987444
Q ss_pred Cc----ccCCCCCCCEEEcccccCCCCCChhh---------------hcCCCceEEccCCccCCCC----cccccCCCCc
Q 036320 170 PN----VVLSLPMLNYLDIRFNEFEGPLPPEL---------------FNKKLDAIFVNNNRFTSMI----PQNFGSNNSA 226 (404)
Q Consensus 170 p~----~l~~l~~L~~L~L~~n~l~~~~p~~~---------------~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L 226 (404)
+. -+..+..|++|+|.+|.+. ...... ....|+.+...+|++...- ...|...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 43 3456789999999999876 222111 0123777777777665321 2234455667
Q ss_pred ceeccccCcCCCC----ChhHHHhhhcccceeEccCCCCcc----cCCcccCCCCCCCEEEcccCcCCCCCchhc-----
Q 036320 227 SVLVIANNKFGGC----LPPSVANLANSIEELLLINTSISG----CLPPEVGYLYKLRVLDVSLNKLVGPIPYSI----- 293 (404)
Q Consensus 227 ~~L~l~~n~l~~~----~p~~l~~l~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----- 293 (404)
+.+.+..|.|... +-..+...+ .|+.|||.+|-++. .+...+..+++|+.|++++|.+.......+
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 7777777766411 223444455 66667776666652 233445556666666666666664333222
Q ss_pred cCCCCCCEeeccCCcCccc----CchhccCCCCCcEEeccCCcC
Q 036320 294 AGLAHLELLNLAHNMMSGI----VPEGVCLLPNLSNFTFSYNFF 333 (404)
Q Consensus 294 ~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l 333 (404)
...++|+.|.+.+|.|+.. +...+...+.|+.|+|++|.+
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2356666666666666532 122333456666666666666
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=3.2e-12 Score=114.17 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=55.5
Q ss_pred CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcc
Q 036320 202 LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVS 281 (404)
Q Consensus 202 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 281 (404)
|+++|+++|.|+. +..+..-.+.++.|++++|.|. .+. .+..++ +|+.||+++|.++ .+-.+-.++-++++|.|+
T Consensus 286 LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~-~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 286 LTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ-NLAELP-QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhccccccchhh-hhhhhhhccceeEEecccccee-eeh-hhhhcc-cceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4455555554442 3333344444555555555444 221 144444 4555555555444 222222334444455555
Q ss_pred cCcCCCCCchhccCCCCCCEeeccCCcCccc-CchhccCCCCCcEEeccCCcCccc
Q 036320 282 LNKLVGPIPYSIAGLAHLELLNLAHNMMSGI-VPEGVCLLPNLSNFTFSYNFFCEE 336 (404)
Q Consensus 282 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~ 336 (404)
.|.|.. -..+..+-+|..||+++|+|... --..++++|-|+.+.|.+|.+.+.
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 554441 12344444455555555544321 112344444455555555554443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.5e-12 Score=118.52 Aligned_cols=212 Identities=22% Similarity=0.197 Sum_probs=147.8
Q ss_pred cCCCCCCEEECCCCcCCCCCc-ccCCCCCCCCEEeCcCcccCCC--CCcccCCCCCCCEEEcccccCCCCCChhhhc--C
Q 036320 126 GLLSDLALIHLNSNRFCGIVP-QTLSNLTLLYELDLSNNRFVGP--FPNVVLSLPMLNYLDIRFNEFEGPLPPELFN--K 200 (404)
Q Consensus 126 ~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~--~ 200 (404)
+++++|+.+.|.+..+....- .....+++++.|||++|-|... +-....+|++|+.|+|+.|++.......... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467889999999988773221 3456789999999999988743 2234568999999999999987333322222 2
Q ss_pred CCceEEccCCccCCCCc-ccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccC-CcccCCCCCCCEE
Q 036320 201 KLDAIFVNNNRFTSMIP-QNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCL-PPEVGYLYKLRVL 278 (404)
Q Consensus 201 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L 278 (404)
.|+.|.++.|.++..-. .....+++|+.|++.+|.....-......+. .|++|+|++|++-... -...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~-~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ-TLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh-HHhhccccCCcccccccccccccccchhhh
Confidence 38999999999884322 2345679999999999953222222222333 8999999999987322 2456788999999
Q ss_pred EcccCcCCCCC-chh-----ccCCCCCCEeeccCCcCccc-CchhccCCCCCcEEeccCCcCcccCC
Q 036320 279 DVSLNKLVGPI-PYS-----IAGLAHLELLNLAHNMMSGI-VPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 279 ~Ls~N~l~~~~-p~~-----l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
+++.+.++..- |+. ...+++|++|++.+|+|..- --..+..+++|+.|.+..|.|+.+..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 99999987432 222 34578999999999999532 11334556788888888999876543
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=5.7e-12 Score=114.76 Aligned_cols=234 Identities=21% Similarity=0.258 Sum_probs=167.8
Q ss_pred ccccCCCCCCEEECCCCcCCCC----CcccCCCCCCCCEEeCcCcccCCC----CCc-------ccCCCCCCCEEEcccc
Q 036320 123 DELGLLSDLALIHLNSNRFCGI----VPQTLSNLTLLYELDLSNNRFVGP----FPN-------VVLSLPMLNYLDIRFN 187 (404)
Q Consensus 123 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~-------~l~~l~~L~~L~L~~n 187 (404)
+.+..+..++.++|++|.|... +...+.+.+.|+..++++- ++|. +|. .+...++|++|+||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3456778999999999999843 3445677789999999863 3333 343 3456779999999999
Q ss_pred cCCCCCChhhhc----C-CCceEEccCCccCCCCcc-------------cccCCCCcceeccccCcCCCC----ChhHHH
Q 036320 188 EFEGPLPPELFN----K-KLDAIFVNNNRFTSMIPQ-------------NFGSNNSASVLVIANNKFGGC----LPPSVA 245 (404)
Q Consensus 188 ~l~~~~p~~~~~----~-~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~----~p~~l~ 245 (404)
-+.-..++.+.. . .|++|+|.+|.+.-.-.. ....-++|+.+...+|++... +...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 997555555433 2 399999999988632211 234457899999999998733 233444
Q ss_pred hhhcccceeEccCCCCccc----CCcccCCCCCCCEEEcccCcCCCC----CchhccCCCCCCEeeccCCcCcccCchhc
Q 036320 246 NLANSIEELLLINTSISGC----LPPEVGYLYKLRVLDVSLNKLVGP----IPYSIAGLAHLELLNLAHNMMSGIVPEGV 317 (404)
Q Consensus 246 ~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 317 (404)
..+ .|+.+.++.|.|... +-..+..+++|+.|||..|-++.. +...+..+++|++|+++++.+...-...|
T Consensus 183 ~~~-~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 183 SHP-TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred hcc-ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 444 899999999998732 345678899999999999999843 23456778999999999999976533322
Q ss_pred -----cCCCCCcEEeccCCcCcccCC----CCCCcCCCceeeecCCCCCC
Q 036320 318 -----CLLPNLSNFTFSYNFFCEEEG----ICNNLTSKGIAYDDRWNCFP 358 (404)
Q Consensus 318 -----~~l~~L~~L~l~~N~l~~~~~----~~~~l~~~~~~l~l~~N~l~ 358 (404)
...+.|++|.|.+|.|+..-. .+..-...+..|+|++|++.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 346899999999999975311 11111333444999999995
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.7e-11 Score=109.58 Aligned_cols=141 Identities=21% Similarity=0.139 Sum_probs=101.9
Q ss_pred CCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchh
Q 036320 213 TSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYS 292 (404)
Q Consensus 213 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 292 (404)
+|.....+..+..|+++||++|.|+ .+.++..-.+ .++.|+++.|.|... ..+..+.+|+.||||+|.++ .+..+
T Consensus 273 ~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gw 347 (490)
T KOG1259|consen 273 NGSALVSADTWQELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGW 347 (490)
T ss_pred CCceEEecchHhhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhh
Confidence 3444445556678889999999888 6777777777 899999999988733 33778889999999999888 45555
Q ss_pred ccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCC--CCCCcCCCceeeecCCCCCCCCC
Q 036320 293 IAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG--ICNNLTSKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 293 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~--~~~~l~~~~~~l~l~~N~l~~~~ 361 (404)
-..+-+++.|.|+.|.|.. -+.+..+-+|..||+++|+|..... ....++-. +.+.|.+|.|.+.+
T Consensus 348 h~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL-E~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL-ETLRLTGNPLAGSV 415 (490)
T ss_pred HhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHH-HHHhhcCCCccccc
Confidence 5567888899999998852 2456777788889999998865321 22222221 22778888888776
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=4e-11 Score=102.19 Aligned_cols=82 Identities=29% Similarity=0.386 Sum_probs=20.0
Q ss_pred ccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhc-cCCCCCCEeeccCCcCcccC-chhccCCCCCcEEe
Q 036320 250 SIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSI-AGLAHLELLNLAHNMMSGIV-PEGVCLLPNLSNFT 327 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ 327 (404)
+|+.|++++|.|+.. +.+..+++|++|++++|+|+. +.+.+ ..+++|++|++++|+|.... -..+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 43 KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp T--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 344444444444421 123334444444444444442 22222 23444444444444443211 12333444444444
Q ss_pred ccCCcCc
Q 036320 328 FSYNFFC 334 (404)
Q Consensus 328 l~~N~l~ 334 (404)
+.+|.++
T Consensus 120 L~~NPv~ 126 (175)
T PF14580_consen 120 LEGNPVC 126 (175)
T ss_dssp -TT-GGG
T ss_pred ccCCccc
Confidence 4444444
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.08 E-value=2.1e-11 Score=119.85 Aligned_cols=216 Identities=25% Similarity=0.266 Sum_probs=111.6
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
..+..+++..|.+.. +-..+..+++|+.|++.+|.|... ...+..+++|++|++++|.|+... .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 344455555555544 222355566666666666666632 222555666666666666666442 2555556666666
Q ss_pred ccccCCCCCChhhhcCCCceEEccCCccCCCCc-ccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcc
Q 036320 185 RFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIP-QNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISG 263 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 263 (404)
++|.++ .+...-....|+.+++++|++...-+ . ...+.+++.+.+.+|.+... ..+..+. .+..+++..|.++.
T Consensus 148 ~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~-~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 148 SGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLK-KLVLLSLLDNKISK 222 (414)
T ss_pred ccCcch-hccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHH-HHHHhhccccccee
Confidence 666665 33333223336666666666664333 1 35556666666666666521 2222222 34444555555552
Q ss_pred cCCcccCCCCC--CCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCc
Q 036320 264 CLPPEVGYLYK--LRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFC 334 (404)
Q Consensus 264 ~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 334 (404)
.-+ +..+.. |+.+++++|.+. ..+..+..+..+..|++.+|++... ..+...+.+..+....|.+.
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 211 112222 566666666665 3334455555666666666665432 12333344444555555544
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.05 E-value=1.6e-11 Score=120.65 Aligned_cols=220 Identities=27% Similarity=0.237 Sum_probs=161.4
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
.++.++...+.+.+.-.. ...+..++.++++.|.+.. +-..+..+.+|+.|++.+|+|... ...+..+++|++|+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence 344455555444332111 1456778888899999884 344578899999999999999954 3337889999999999
Q ss_pred cccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccC
Q 036320 186 FNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCL 265 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 265 (404)
+|.|+ .+...-....|+.|++++|.+... ..+..+..|+.+++++|++...-+.....+. +++.+++.+|.+...
T Consensus 127 ~N~I~-~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~-~l~~l~l~~n~i~~i- 201 (414)
T KOG0531|consen 127 FNKIT-KLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELI-SLEELDLGGNSIREI- 201 (414)
T ss_pred ccccc-cccchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhcc-chHHHhccCCchhcc-
Confidence 99998 444433334499999999999864 4466689999999999999843331145666 899999999998733
Q ss_pred CcccCCCCCCCEEEcccCcCCCCCchhccCCCC--CCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccC
Q 036320 266 PPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAH--LELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 266 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
..+..+..+..+++..|.++..-+ +..+.. |+.+++++|++. .+++.+..+..+..+++.+|++....
T Consensus 202 -~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 202 -EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred -cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc
Confidence 445556677777999999984322 333444 899999999997 44466778889999999999987653
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.3e-10 Score=97.53 Aligned_cols=139 Identities=23% Similarity=0.257 Sum_probs=50.2
Q ss_pred cccccCCCCCChhhhcCCCceEEccCCccCCCCccccc-CCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 184 IRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFG-SNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
|..+.|. .++.......+++|+|++|.|+.. +.++ .+.+|+.|++++|.|+ .+ +.+..+. .|++|++++|.|+
T Consensus 4 lt~~~i~-~~~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~-~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 4 LTANMIE-QIAQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLP-RLKTLDLSNNRIS 77 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S----TT----T-T--EEE--SS---
T ss_pred ccccccc-cccccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cc-cCccChh-hhhhcccCCCCCC
Confidence 3444444 455555555689999999999853 3455 5788999999999998 34 3577777 8999999999998
Q ss_pred ccCCccc-CCCCCCCEEEcccCcCCCCC-chhccCCCCCCEeeccCCcCcccC---chhccCCCCCcEEecc
Q 036320 263 GCLPPEV-GYLYKLRVLDVSLNKLVGPI-PYSIAGLAHLELLNLAHNMMSGIV---PEGVCLLPNLSNFTFS 329 (404)
Q Consensus 263 ~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~l~ 329 (404)
. +.+.+ ..+++|++|++++|+|...- -..+..+++|+.|++.+|.++... ...+..+|+|+.||-.
T Consensus 78 ~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 78 S-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred c-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 4 43334 45889999999999997432 245677899999999999887431 2245678888888653
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8.8e-11 Score=109.98 Aligned_cols=207 Identities=19% Similarity=0.208 Sum_probs=138.9
Q ss_pred CCCcEEEEEcCCCCCCccCc-ccccCCCCCCEEECCCCcCCCCCc--ccCCCCCCCCEEeCcCcccCCCCCccc-CCCCC
Q 036320 103 KIQVVSGIDLNNADIAGFLP-DELGLLSDLALIHLNSNRFCGIVP--QTLSNLTLLYELDLSNNRFVGPFPNVV-LSLPM 178 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~ 178 (404)
.+..++++.|.+..+....- .....+++++.|+|+.|-+..-.+ .-...+++|+.|+|+.|++........ ..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45677778888776654211 346678889999999987774322 334568889999999998873322221 24678
Q ss_pred CCEEEcccccCCCCCChhhh--cCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCCh--hHHHhhhccccee
Q 036320 179 LNYLDIRFNEFEGPLPPELF--NKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLP--PSVANLANSIEEL 254 (404)
Q Consensus 179 L~~L~L~~n~l~~~~p~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~~L~~L 254 (404)
|+.|.|+.|.++..--..+. .+.|+.|++..|............+..|+.|+|++|++. ..+ ...+.++ .|+.|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~-~L~~L 276 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP-GLNQL 276 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccccccc-chhhh
Confidence 88999999988742222221 144888999888644344444556678899999998876 333 3455666 88888
Q ss_pred EccCCCCccc-CCcc-----cCCCCCCCEEEcccCcCCCCC-chhccCCCCCCEeeccCCcCcc
Q 036320 255 LLINTSISGC-LPPE-----VGYLYKLRVLDVSLNKLVGPI-PYSIAGLAHLELLNLAHNMMSG 311 (404)
Q Consensus 255 ~l~~n~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~ 311 (404)
+++.+.+... .|+. ...+++|++|+++.|+|...- -..+..+++|+.|.+..|.+..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 8888888753 2332 356789999999999996321 1334556778888888888763
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=6.6e-10 Score=77.98 Aligned_cols=60 Identities=38% Similarity=0.526 Sum_probs=36.3
Q ss_pred CCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcC
Q 036320 274 KLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFF 333 (404)
Q Consensus 274 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 333 (404)
+|++|++++|+++...+..|.++++|++|++++|+|+...++.|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666644445556666666666666666655555666666666666666654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=9.4e-10 Score=77.21 Aligned_cols=59 Identities=39% Similarity=0.593 Sum_probs=33.0
Q ss_pred CCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEccccc
Q 036320 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNE 188 (404)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 188 (404)
+|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555555545555555555555555554
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=4.7e-09 Score=110.74 Aligned_cols=251 Identities=14% Similarity=0.127 Sum_probs=139.4
Q ss_pred CcEEEEEcCCCC--CCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 105 QVVSGIDLNNAD--IAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 105 ~~l~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
+.++.|-+.+|. +.....+.|..++.|++|||++|.-.+.+|..++.+-+|++|+++++.++ .+|..+.+|++|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356677777775 45545556777888888888877766678888888888888888888887 778888888888888
Q ss_pred EcccccCCCCCChhhhcCC-CceEEccCCcc--CCCCcccccCCCCcceeccccCcCCCCChhHHHhhh---cccceeEc
Q 036320 183 DIRFNEFEGPLPPELFNKK-LDAIFVNNNRF--TSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLA---NSIEELLL 256 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~---~~L~~L~l 256 (404)
++..+.....+|.....+. |++|.+..... ....-..+..+.+|+.+....... .+-..+..+. ...+.+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence 8887765545555554333 88877765432 122222334444444444432221 0111111111 12223333
Q ss_pred cCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccC------CCCCCEeeccCCcCcccCchhccCCCCCcEEeccC
Q 036320 257 INTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAG------LAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSY 330 (404)
Q Consensus 257 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 330 (404)
.++... ..+..+..+.+|+.|.+.++.+.......... ++++..+...++..- ..+.+....++|+.|++..
T Consensus 702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 702 EGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred cccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEec
Confidence 333332 44566778889999998888876332222111 112222222222111 1233334557888898886
Q ss_pred Cc-CcccCCCCCCcCCCceeeecCCCCCCCCC
Q 036320 331 NF-FCEEEGICNNLTSKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 331 N~-l~~~~~~~~~l~~~~~~l~l~~N~l~~~~ 361 (404)
.. +.+++|....+..... +-+.++.+.+++
T Consensus 780 ~~~~e~~i~~~k~~~~l~~-~i~~f~~~~~l~ 810 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELKE-LILPFNKLEGLR 810 (889)
T ss_pred ccccccCCCHHHHhhhccc-EEecccccccce
Confidence 66 4445554333322111 345555565554
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.62 E-value=1.1e-08 Score=90.52 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=60.6
Q ss_pred CCcEEEEEcCCCCCCcc----CcccccCCCCCCEEECCCCcCC---CCCc-------ccCCCCCCCCEEeCcCcccCCCC
Q 036320 104 IQVVSGIDLNNADIAGF----LPDELGLLSDLALIHLNSNRFC---GIVP-------QTLSNLTLLYELDLSNNRFVGPF 169 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~---~~~p-------~~l~~l~~L~~L~Ls~n~l~~~~ 169 (404)
+..++++||++|.|... +...+.+-++|+..+++.-... ..++ ..+.++++|+.++||+|.|....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 45788899999998653 3344666778888887764322 1222 24567888999999999887666
Q ss_pred Ccc----cCCCCCCCEEEcccccCC
Q 036320 170 PNV----VLSLPMLNYLDIRFNEFE 190 (404)
Q Consensus 170 p~~----l~~l~~L~~L~L~~n~l~ 190 (404)
|.. ++.-+.|++|.|++|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 643 455678888888888775
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=3.1e-09 Score=105.41 Aligned_cols=180 Identities=21% Similarity=0.220 Sum_probs=100.2
Q ss_pred cccCCCCCCCCEEeCcCcccCCCCCcccCCC-CCCCEEEcccccCC----------CCCChhhhcCCCceEEccCCccCC
Q 036320 146 PQTLSNLTLLYELDLSNNRFVGPFPNVVLSL-PMLNYLDIRFNEFE----------GPLPPELFNKKLDAIFVNNNRFTS 214 (404)
Q Consensus 146 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~p~~~~~~~L~~L~l~~n~l~~ 214 (404)
|-.+..+..|+.|.|.++.+... ..+..+ .+|+.|... |.++ |.+........|...+.+.|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 44566677888888888877631 112111 123333222 2211 222222222336666666776653
Q ss_pred CCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhcc
Q 036320 215 MIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIA 294 (404)
Q Consensus 215 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 294 (404)
...++.-++.++.|+|++|++... ..+..++ .|++||++.|.+. .+|..-..-.+|+.|.|++|.++.. ..+.
T Consensus 179 -mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~-~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 179 -MDESLQLLPALESLNLSHNKFTKV--DNLRRLP-KLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -HHHHHHHHHHhhhhccchhhhhhh--HHHHhcc-cccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHH
Confidence 444556666777777777777632 2566666 6777777777776 3333211112377777777777622 3356
Q ss_pred CCCCCCEeeccCCcCcccC-chhccCCCCCcEEeccCCcCcc
Q 036320 295 GLAHLELLNLAHNMMSGIV-PEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 295 ~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
++.+|+.||+++|-|.+.- -+.+..+..|+.|.|.+|.+.-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 6777777777777765432 1234455667777777777653
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=6.7e-08 Score=102.14 Aligned_cols=203 Identities=25% Similarity=0.253 Sum_probs=136.5
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCc--CCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNR--FCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNY 181 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 181 (404)
...++.+.+-+|.+... +... ..++|++|-+..|. +.....+.|..++.|+.|||++|.--+.+|..+++|-+|++
T Consensus 522 ~~~~rr~s~~~~~~~~~-~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHI-AGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchhhc-cCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 35667777777766442 2222 33479999998886 55445556888999999999998777789999999999999
Q ss_pred EEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCC--CCChhHHHhhhcccceeEccC
Q 036320 182 LDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFG--GCLPPSVANLANSIEELLLIN 258 (404)
Q Consensus 182 L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~~L~~L~l~~ 258 (404)
|+++++.+. .+|..+...+ |.+|++..+.....++.....+.+|++|.+...... ...-..+..+. +|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le-~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE-HLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc-chhhheeec
Confidence 999999998 8999999877 999999988776666777777999999988765422 12222333333 444444432
Q ss_pred CCCcccCCcccCCCCCCC----EEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccC
Q 036320 259 TSISGCLPPEVGYLYKLR----VLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIV 313 (404)
Q Consensus 259 n~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 313 (404)
... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+....
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhh
Confidence 222 1112223333333 3333333333 34556778899999999998886443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.6e-09 Score=94.84 Aligned_cols=232 Identities=19% Similarity=0.170 Sum_probs=152.7
Q ss_pred cccceeeCCCCCCCCCCcEEEEEcCCCCCCccCcccccCC--CCCCEEECCCCcCCCC-CcccCCCC-CCCCEEeCcCcc
Q 036320 89 NYRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLL--SDLALIHLNSNRFCGI-VPQTLSNL-TLLYELDLSNNR 164 (404)
Q Consensus 89 ~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~-~p~~l~~l-~~L~~L~Ls~n~ 164 (404)
+|.++.-+ -...+.+|+.+-.|. |..++.+ +....+.+..-.+... +.+.+.-. ++|++|||++..
T Consensus 127 Rfyr~~~d-------e~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~ 196 (419)
T KOG2120|consen 127 RFYRLASD-------ESLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSV 196 (419)
T ss_pred HHhhcccc-------ccceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhh
Confidence 46665543 356788999887774 3444443 3445555554333322 22222222 469999999988
Q ss_pred cCC-CCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCC-ccCCCCc-ccccCCCCcceeccccCcCCCC-
Q 036320 165 FVG-PFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNN-RFTSMIP-QNFGSNNSASVLVIANNKFGGC- 239 (404)
Q Consensus 165 l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~- 239 (404)
++- .+-..++.+.+|+.|.+.++++...+-..+..-. |+.|+++.+ .++.... -.+..++.|..|+++.+.+...
T Consensus 197 it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 197 ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK 276 (419)
T ss_pred eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh
Confidence 872 1223467788999999999999877766666654 999999865 3442211 2356788999999998876633
Q ss_pred ChhHHHhhhcccceeEccCCCCc---ccCCcccCCCCCCCEEEcccC-cCCCCCchhccCCCCCCEeeccCCcCcccCch
Q 036320 240 LPPSVANLANSIEELLLINTSIS---GCLPPEVGYLYKLRVLDVSLN-KLVGPIPYSIAGLAHLELLNLAHNMMSGIVPE 315 (404)
Q Consensus 240 ~p~~l~~l~~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 315 (404)
+-..+.....+|+.|+++++.-. ..+..-...+++|.+||||.| .++...-..+..++.|++|.++.+.. ++|+
T Consensus 277 Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~ 354 (419)
T KOG2120|consen 277 VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPE 354 (419)
T ss_pred hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChH
Confidence 22333444458889999887522 122233457889999999986 45544445677889999999998874 6776
Q ss_pred hc---cCCCCCcEEeccCCc
Q 036320 316 GV---CLLPNLSNFTFSYNF 332 (404)
Q Consensus 316 ~l---~~l~~L~~L~l~~N~ 332 (404)
.+ ...|.|.+||+.+.-
T Consensus 355 ~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 355 TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HeeeeccCcceEEEEecccc
Confidence 55 566899999987754
No 46
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.50 E-value=1.6e-07 Score=60.51 Aligned_cols=39 Identities=31% Similarity=0.667 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHcccCCCCCCCCCCC---CCCCcccceeeC
Q 036320 58 HQAYIALQAWKKVIYSDPNNFTTNWVG---PSVCNYRGIYCA 96 (404)
Q Consensus 58 ~~~~~aL~~~k~~~~~~~~~~l~~w~~---~~~C~w~gv~c~ 96 (404)
++|++||++||+++..++...+.+|+. .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999997777889999964 689999999994
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.49 E-value=1.2e-08 Score=81.40 Aligned_cols=10 Identities=40% Similarity=0.381 Sum_probs=4.4
Q ss_pred CEEeCcCccc
Q 036320 156 YELDLSNNRF 165 (404)
Q Consensus 156 ~~L~Ls~n~l 165 (404)
..+||+.+++
T Consensus 30 h~ldLssc~l 39 (177)
T KOG4579|consen 30 HFLDLSSCQL 39 (177)
T ss_pred hhcccccchh
Confidence 3444444444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=7.3e-09 Score=102.81 Aligned_cols=178 Identities=24% Similarity=0.291 Sum_probs=124.3
Q ss_pred CcccCCCCCCCEEEcccccCCCCCChhhhcC--CCceEEccCCccC----------CCCcccccCCCCcceeccccCcCC
Q 036320 170 PNVVLSLPMLNYLDIRFNEFEGPLPPELFNK--KLDAIFVNNNRFT----------SMIPQNFGSNNSASVLVIANNKFG 237 (404)
Q Consensus 170 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~--~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~ 237 (404)
|-.+..+.+|+.|.|.++.+. .. ..+... +|++|-..+. +. |.+... -.+.+|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~-~~-~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS-TA-KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNS-PVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchh-hh-hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHH
Confidence 556777889999999999887 32 122221 2666554322 11 111111 12356888899999998
Q ss_pred CCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchh-ccCCCCCCEeeccCCcCcccCchh
Q 036320 238 GCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYS-IAGLAHLELLNLAHNMMSGIVPEG 316 (404)
Q Consensus 238 ~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~ 316 (404)
.+.+++.-++ .++.|+|++|++... ..+..+++|++|||++|.+. .+|.. ..++ +|..|.+++|.++.. ..
T Consensus 178 -~mD~SLqll~-ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 178 -LMDESLQLLP-ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RG 249 (1096)
T ss_pred -hHHHHHHHHH-Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hh
Confidence 6778888887 999999999999854 37888999999999999999 55542 2233 499999999999733 45
Q ss_pred ccCCCCCcEEeccCCcCcccCC--CCCCcCCCceeeecCCCCCCCC
Q 036320 317 VCLLPNLSNFTFSYNFFCEEEG--ICNNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 317 l~~l~~L~~L~l~~N~l~~~~~--~~~~l~~~~~~l~l~~N~l~~~ 360 (404)
+.++.+|+.||+++|-|.+.-. .++.+.. ++.|+|.+|.+.=-
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~-L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSS-LIVLWLEGNPLCCA 294 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHH-HHHHhhcCCccccC
Confidence 7889999999999999987432 2222222 34488888877533
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=4.2e-08 Score=88.07 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=53.1
Q ss_pred ccceeEccCCCCccc-CCcccCCCCCCCEEEcccCcCCCCC-chhccCCCCCCEeeccCCcCcccCch------hccCCC
Q 036320 250 SIEELLLINTSISGC-LPPEVGYLYKLRVLDVSLNKLVGPI-PYSIAGLAHLELLNLAHNMMSGIVPE------GVCLLP 321 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~------~l~~l~ 321 (404)
++..+.+..|.+... .-+....++.+..|.|+.|+|...- -+.+.+++.|+.|.+++|.+.+.+-. -+++++
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 677777777765532 1233445666677888888887432 24577788888888888877643321 235677
Q ss_pred CCcEEeccCCcCcc
Q 036320 322 NLSNFTFSYNFFCE 335 (404)
Q Consensus 322 ~L~~L~l~~N~l~~ 335 (404)
+++.|+=+ +|+.
T Consensus 280 ~v~vLNGs--kIss 291 (418)
T KOG2982|consen 280 KVQVLNGS--KISS 291 (418)
T ss_pred ceEEecCc--ccch
Confidence 77777644 5543
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=3.6e-07 Score=81.22 Aligned_cols=235 Identities=18% Similarity=0.194 Sum_probs=160.1
Q ss_pred ccCCCCCCEEECCCCcCCCCC----cccCCCCCCCCEEeCcCcccCCC----CC-------cccCCCCCCCEEEcccccC
Q 036320 125 LGLLSDLALIHLNSNRFCGIV----PQTLSNLTLLYELDLSNNRFVGP----FP-------NVVLSLPMLNYLDIRFNEF 189 (404)
Q Consensus 125 l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~----~p-------~~l~~l~~L~~L~L~~n~l 189 (404)
+..+..+..++||+|.|...- ...+.+-.+|+..+++.-. +|. ++ ..+..+++|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 455789999999999998443 3345566788888887632 222 22 3456789999999999999
Q ss_pred CCCCChhhhc-----CCCceEEccCCccCCCCcccc-------------cCCCCcceeccccCcCCCCChhHH----Hhh
Q 036320 190 EGPLPPELFN-----KKLDAIFVNNNRFTSMIPQNF-------------GSNNSASVLVIANNKFGGCLPPSV----ANL 247 (404)
Q Consensus 190 ~~~~p~~~~~-----~~L~~L~l~~n~l~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~p~~l----~~l 247 (404)
....|+.+.. ..|++|.+++|.+.-.....+ ..-+.|+......|++.. .+... ...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHh
Confidence 8777776544 339999999998864322222 245789999999999872 22211 122
Q ss_pred hcccceeEccCCCCccc-----CCcccCCCCCCCEEEcccCcCCCCC----chhccCCCCCCEeeccCCcCcccCchhc-
Q 036320 248 ANSIEELLLINTSISGC-----LPPEVGYLYKLRVLDVSLNKLVGPI----PYSIAGLAHLELLNLAHNMMSGIVPEGV- 317 (404)
Q Consensus 248 ~~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~p~~l- 317 (404)
..+|+.+.+..|.|... +-..+..+.+|+.|||..|-++... ...+..++.|++|.+..|.++.....++
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 23799999999998732 1123456789999999999998432 2345667889999999999875543322
Q ss_pred -----cCCCCCcEEeccCCcCcccCCC------CCC-cCCCceeeecCCCCCCCCC
Q 036320 318 -----CLLPNLSNFTFSYNFFCEEEGI------CNN-LTSKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 318 -----~~l~~L~~L~l~~N~l~~~~~~------~~~-l~~~~~~l~l~~N~l~~~~ 361 (404)
...++|..|-+.+|.+.+.+-. +.+ -...+..+.+.+|+|.+..
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 2357889999999998764321 111 0111233677888887653
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2e-08 Score=90.07 Aligned_cols=85 Identities=22% Similarity=0.207 Sum_probs=50.7
Q ss_pred cEEEEEcCCCCCCc-cCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcc-cCCC-CCcccCCCCCCCEE
Q 036320 106 VVSGIDLNNADIAG-FLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNR-FVGP-FPNVVLSLPMLNYL 182 (404)
Q Consensus 106 ~l~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L 182 (404)
+++.+||++..|+. ..-..++.+.+|+.|.|.++++.+.+...+++-..|+.|+|+.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46667777666653 122335566677777777777776666666666777777776643 3311 11234566667777
Q ss_pred EcccccCC
Q 036320 183 DIRFNEFE 190 (404)
Q Consensus 183 ~L~~n~l~ 190 (404)
+++.+.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 77766654
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=2e-07 Score=74.53 Aligned_cols=92 Identities=23% Similarity=0.273 Sum_probs=55.1
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++.++|++|.+....+..-...+.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..|.+|.+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 45666666666666533333334456666666666666 45555666666666666666665 45555555666666666
Q ss_pred ccccCCCCCChhhhc
Q 036320 185 RFNEFEGPLPPELFN 199 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~ 199 (404)
.+|.+. .+|..++.
T Consensus 131 ~~na~~-eid~dl~~ 144 (177)
T KOG4579|consen 131 PENARA-EIDVDLFY 144 (177)
T ss_pred CCCccc-cCcHHHhc
Confidence 666665 55555433
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=2.8e-07 Score=82.92 Aligned_cols=211 Identities=16% Similarity=0.140 Sum_probs=111.6
Q ss_pred CCCCCCEEECCCCcCCCCCc-ccCC-CCCCCCEEeCcCcccCC--CCCcccCCCCCCCEEEcccccCCCCCChh-hhcCC
Q 036320 127 LLSDLALIHLNSNRFCGIVP-QTLS-NLTLLYELDLSNNRFVG--PFPNVVLSLPMLNYLDIRFNEFEGPLPPE-LFNKK 201 (404)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~p-~~l~-~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~ 201 (404)
..+.++.|.+.++.|...-. ..|+ ..+.+++|||.+|.|+. .+...+.+|+.|++|+++.|++...|... +-..+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 33444455555544442111 1122 34566666666666652 12234456667777777777665332221 11223
Q ss_pred CceEEccCCccCCCC-cccccCCCCcceeccccCcCCC--CChhHHHhhhcccceeEccCCCCcc--cCCcccCCCCCCC
Q 036320 202 LDAIFVNNNRFTSMI-PQNFGSNNSASVLVIANNKFGG--CLPPSVANLANSIEELLLINTSISG--CLPPEVGYLYKLR 276 (404)
Q Consensus 202 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~ 276 (404)
|+.|-|.+..+.-.. ...+..++.+++|.++.|.+.. .-..........+++|.+..|...- .....-.-++++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 666666666554322 2334566677777777763320 0011111111133344433333210 0001112356777
Q ss_pred EEEcccCcCCCCC-chhccCCCCCCEeeccCCcCccc-CchhccCCCCCcEEeccCCcCcccC
Q 036320 277 VLDVSLNKLVGPI-PYSIAGLAHLELLNLAHNMMSGI-VPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 277 ~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
.+.+..|.+...- -.....++.+.-|+|+.|+|..- --+.+.+++.|..|.+++|.+.+..
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 7888888765322 23455577778899999999642 2356788999999999999987654
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=7.7e-06 Score=78.45 Aligned_cols=135 Identities=17% Similarity=0.219 Sum_probs=77.4
Q ss_pred ccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccc-cCCCCCChhhhcCCCc
Q 036320 125 LGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFN-EFEGPLPPELFNKKLD 203 (404)
Q Consensus 125 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~~~L~ 203 (404)
+..+.+++.|++++|.++ .+|. + ..+|++|.++++.--..+|..+ .++|++|++++| .+. .+|.. |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s-----Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPES-----VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccccc-----cc
Confidence 445688999999999887 4452 2 2469999998744323566544 357888888887 444 45532 56
Q ss_pred eEEccCCccCC--CCcccccCCCCcceeccccCc-CC-CCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEE
Q 036320 204 AIFVNNNRFTS--MIPQNFGSNNSASVLVIANNK-FG-GCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLD 279 (404)
Q Consensus 204 ~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~-~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 279 (404)
.|++..+.... .+| ++|+.|.+.+++ .. ..+|. .++.+|++|++++|... .+|..+ ..+|++|+
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ 183 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKL--PESLQSIT 183 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcccc--cccCcEEE
Confidence 66666554321 222 245566554322 11 01111 23346777777776654 334333 24677777
Q ss_pred cccC
Q 036320 280 VSLN 283 (404)
Q Consensus 280 Ls~N 283 (404)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7665
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.2e-06 Score=54.59 Aligned_cols=36 Identities=39% Similarity=0.595 Sum_probs=17.7
Q ss_pred CCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCc
Q 036320 274 KLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMS 310 (404)
Q Consensus 274 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 310 (404)
+|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=4.8e-06 Score=53.77 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred CCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcc
Q 036320 298 HLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 298 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
+|++|++++|+|+ .+|..++.+++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666 344456666666666666666664
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=1.8e-05 Score=75.99 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=84.3
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCc-ccCCCCCcccCCCCCCCEEE
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNN-RFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~ 183 (404)
..++.|++++|.++.. |. + -.+|++|.++++.--..+|+.+. .+|++|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEE
Confidence 5678999999988763 42 2 24699999987443335665552 58999999998 554 4553 477788
Q ss_pred cccccCC--CCCChhhhcCCCceEEccCCccC--CCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCC
Q 036320 184 IRFNEFE--GPLPPELFNKKLDAIFVNNNRFT--SMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINT 259 (404)
Q Consensus 184 L~~n~l~--~~~p~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n 259 (404)
+..+... +.+|.. |+.|.+.+++.. ..++.. -.++|++|++++|... .+|.. ++.+|+.|.++.+
T Consensus 119 L~~n~~~~L~~LPss-----Lk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~---LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNG-----LTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEK---LPESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcch-----Hhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccc---ccccCcEEEeccc
Confidence 8776543 244443 567776543211 111111 1168999999988765 44543 3348999999876
Q ss_pred C
Q 036320 260 S 260 (404)
Q Consensus 260 ~ 260 (404)
.
T Consensus 188 ~ 188 (426)
T PRK15386 188 Q 188 (426)
T ss_pred c
Confidence 4
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=7.1e-05 Score=64.08 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=41.6
Q ss_pred CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccC-CcccCCCCCCCEEEc
Q 036320 202 LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCL-PPEVGYLYKLRVLDV 280 (404)
Q Consensus 202 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~L 280 (404)
...+|+++|.+... +.|..++.|..|.+++|+|+ .+...+..+.++|+.|.+.+|.|...- -..+..+++|++|.+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44555555555422 33555566666666666666 333334444335666666666654210 112334555555555
Q ss_pred ccCcCC
Q 036320 281 SLNKLV 286 (404)
Q Consensus 281 s~N~l~ 286 (404)
-+|..+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=0.00011 Score=62.97 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=45.4
Q ss_pred ccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccC-chhccCCCCCcEEec
Q 036320 250 SIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIV-PEGVCLLPNLSNFTF 328 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l 328 (404)
+...+||++|++... ..|..++.|.+|.|++|+|+.+-|.--.-+++|..|.|.+|.|.... -+.+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455566666665422 23455666666666666666444433333555666666666654211 123455566666666
Q ss_pred cCCcCcc
Q 036320 329 SYNFFCE 335 (404)
Q Consensus 329 ~~N~l~~ 335 (404)
-+|.++.
T Consensus 121 l~Npv~~ 127 (233)
T KOG1644|consen 121 LGNPVEH 127 (233)
T ss_pred cCCchhc
Confidence 6666554
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=5.7e-05 Score=78.30 Aligned_cols=133 Identities=20% Similarity=0.200 Sum_probs=83.1
Q ss_pred CCceEEccCCccC-CCCcccc-cCCCCcceeccccCcCCCCC-hhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCE
Q 036320 201 KLDAIFVNNNRFT-SMIPQNF-GSNNSASVLVIANNKFGGCL-PPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRV 277 (404)
Q Consensus 201 ~L~~L~l~~n~l~-~~~~~~~-~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 277 (404)
+|++|++++...- ...+..+ ..+|+|+.|.+.+-.+...- -.-...++ +|..||+++.+++.. ..++.+++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-NL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-NLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC-ccceeecCCCCccCc--HHHhccccHHH
Confidence 3888888875432 2222222 34688888888876654222 22223344 788888888888744 56777888888
Q ss_pred EEcccCcCCC-CCchhccCCCCCCEeeccCCcCcccC--ch----hccCCCCCcEEeccCCcCccc
Q 036320 278 LDVSLNKLVG-PIPYSIAGLAHLELLNLAHNMMSGIV--PE----GVCLLPNLSNFTFSYNFFCEE 336 (404)
Q Consensus 278 L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~--p~----~l~~l~~L~~L~l~~N~l~~~ 336 (404)
|.+.+=.+.. ..-..+.++++|+.||+|..+..... .. .-..+|+|+.||.|+..+++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8887766653 22235667888888888876543221 11 123467888888887777664
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=0.00013 Score=75.58 Aligned_cols=195 Identities=21% Similarity=0.182 Sum_probs=106.8
Q ss_pred CCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCC---------ccc------CCCCCCCEEEcccccCC-CC
Q 036320 129 SDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP---------NVV------LSLPMLNYLDIRFNEFE-GP 192 (404)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p---------~~l------~~l~~L~~L~L~~n~l~-~~ 192 (404)
-++...++.+..+....-..+.... |+.|.|.+-......- ..+ ..-.+|++|++++...- ..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 3455666665555533333333334 6666666533221100 000 01246778888775432 12
Q ss_pred CChhhhc--CCCceEEccCCccCCC-CcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcc-cCCcc
Q 036320 193 LPPELFN--KKLDAIFVNNNRFTSM-IPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISG-CLPPE 268 (404)
Q Consensus 193 ~p~~~~~--~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~-~~p~~ 268 (404)
.|..++. +.|+.|.+.+-.+... .-....++++|..||+++.+++. + .+++.+. +|+.|.|.+=.+.. ..-..
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~Lk-nLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLK-NLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccc-cHHHHhccCCCCCchhhHHH
Confidence 2333333 3378887776555321 22334567788888888887773 3 6677777 78888777766653 12234
Q ss_pred cCCCCCCCEEEcccCcCCCCC--c----hhccCCCCCCEeeccCCcCcccCchhc-cCCCCCcEEe
Q 036320 269 VGYLYKLRVLDVSLNKLVGPI--P----YSIAGLAHLELLNLAHNMMSGIVPEGV-CLLPNLSNFT 327 (404)
Q Consensus 269 ~~~l~~L~~L~Ls~N~l~~~~--p----~~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ 327 (404)
+-.+++|+.||+|..+..... . +.-..+|+|+.||.+++.+.+.+-+.+ ..-++|+.+-
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 556788888888876655221 1 122347788888888777765543333 2334444443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00062 Score=60.72 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=42.3
Q ss_pred CcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCc--ccCCCCCcccCCCCCCCEEEcccccCC
Q 036320 121 LPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNN--RFVGPFPNVVLSLPMLNYLDIRFNEFE 190 (404)
Q Consensus 121 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~ 190 (404)
+......+..|+.|++.+..++.. ..|..|++|++|+++.| ++++-++.....+++|++|++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 333344455666666666666522 23566777888888888 444444444455677888888887776
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=4.5e-05 Score=68.37 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=69.0
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCC-CcccCCCCCCCEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPF-PNVVLSLPMLNYL 182 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L 182 (404)
+..++.|++-++++.++ .....++.|++|.|+-|.|+..-| |..+++|++|+|..|.|.+.- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 56778888888888774 235678899999999999986544 788999999999999987431 1356788999999
Q ss_pred EcccccCCCCCChhh
Q 036320 183 DIRFNEFEGPLPPEL 197 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~ 197 (404)
.|..|.-.|.-+...
T Consensus 94 WL~ENPCc~~ag~nY 108 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNY 108 (388)
T ss_pred hhccCCcccccchhH
Confidence 999988776655443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.0038 Score=50.34 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
+++.+.+.. .+...-...|.++++|+.+.+.++ +.......|.++..|+.+.+.+ .+.......|..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 455555543 344433444555555555555553 4433334455555555555543 3222223344455555555554
Q ss_pred c
Q 036320 186 F 186 (404)
Q Consensus 186 ~ 186 (404)
.
T Consensus 90 ~ 90 (129)
T PF13306_consen 90 S 90 (129)
T ss_dssp T
T ss_pred c
Confidence 3
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.00091 Score=59.66 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=65.1
Q ss_pred ccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCC--CCcccCCcccCCCCCCCEEEcccCcCCCCCchh---cc
Q 036320 220 FGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINT--SISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYS---IA 294 (404)
Q Consensus 220 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~ 294 (404)
.-....|+.|.+.+..++.. ..+-.++ +|++|.++.| .+.+.++.....+++|++|++++|+|.. +.. +.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~ 113 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLK 113 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhh
Confidence 34445666666666655521 2244555 7888888888 5665555555566888888888888872 322 44
Q ss_pred CCCCCCEeeccCCcCccc---CchhccCCCCCcEEecc
Q 036320 295 GLAHLELLNLAHNMMSGI---VPEGVCLLPNLSNFTFS 329 (404)
Q Consensus 295 ~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~l~ 329 (404)
.+.+|..|++.+|..+.. --..|.-+++|++||-.
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 566677888887766542 12345556777766543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.32 E-value=0.007 Score=48.77 Aligned_cols=59 Identities=20% Similarity=0.154 Sum_probs=22.2
Q ss_pred ccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 125 LGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 125 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
|.+.++|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44455555555543 333333344555555555555443 332333344444445555553
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.14 E-value=7.8e-05 Score=74.02 Aligned_cols=60 Identities=25% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCEEECCCCcCCCCCc----ccCCCCCCCCEEeCcCcccCCCCCc----ccCCC-CCCCEEEcccccCC
Q 036320 131 LALIHLNSNRFCGIVP----QTLSNLTLLYELDLSNNRFVGPFPN----VVLSL-PMLNYLDIRFNEFE 190 (404)
Q Consensus 131 L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l-~~L~~L~L~~n~l~ 190 (404)
+..|.|.+|.+..... ..+.....|+.|++++|.+.+.--. .+... ..|++|++..|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~ 157 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLT 157 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccc
Confidence 6677777777764432 2345566777777777777632111 12222 34555666665555
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.00063 Score=61.20 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=53.0
Q ss_pred ccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccC-chhccCCCCCcEEec
Q 036320 250 SIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIV-PEGVCLLPNLSNFTF 328 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l 328 (404)
+.+.|++.++.++++ ....+++.|+.|.||-|+|+..- .+..+++|++|+|..|.|.+.. -+.+.++++|+.|-|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 566677777776643 23445677777777777776432 2566777777777777776332 134566677777777
Q ss_pred cCCcCcccCC
Q 036320 329 SYNFFCEEEG 338 (404)
Q Consensus 329 ~~N~l~~~~~ 338 (404)
..|.-+|..+
T Consensus 96 ~ENPCc~~ag 105 (388)
T KOG2123|consen 96 DENPCCGEAG 105 (388)
T ss_pred ccCCcccccc
Confidence 7777666543
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.77 E-value=6.3e-05 Score=74.68 Aligned_cols=181 Identities=23% Similarity=0.232 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCCccC----cccccCCCCCCEEECCCCcCCCCCcc----cCCCC-CCCCEEeCcCcccCCC----CCccc
Q 036320 107 VSGIDLNNADIAGFL----PDELGLLSDLALIHLNSNRFCGIVPQ----TLSNL-TLLYELDLSNNRFVGP----FPNVV 173 (404)
Q Consensus 107 l~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l-~~L~~L~Ls~n~l~~~----~p~~l 173 (404)
+..++|.+|.+.... ...+..+..|+.|++++|.+.+.--. .+... ..|++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 778899999997643 34566789999999999999854222 22232 5678899999988854 44566
Q ss_pred CCCCCCCEEEcccccCCC----CCChhhhc----C-CCceEEccCCccCCCCc----ccccCCCC-cceeccccCcCCCC
Q 036320 174 LSLPMLNYLDIRFNEFEG----PLPPELFN----K-KLDAIFVNNNRFTSMIP----QNFGSNNS-ASVLVIANNKFGGC 239 (404)
Q Consensus 174 ~~l~~L~~L~L~~n~l~~----~~p~~~~~----~-~L~~L~l~~n~l~~~~~----~~~~~l~~-L~~L~l~~n~l~~~ 239 (404)
.....++.++++.|.+.. .++..+.. . .+++|.++++.++.... ..+...+. +..|++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 678889999999998741 12222221 2 27888888887763211 12333344 66688888877643
Q ss_pred ----ChhHHHhhhcccceeEccCCCCccc----CCcccCCCCCCCEEEcccCcCCC
Q 036320 240 ----LPPSVANLANSIEELLLINTSISGC----LPPEVGYLYKLRVLDVSLNKLVG 287 (404)
Q Consensus 240 ----~p~~l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 287 (404)
+...+..+...+++++++.|.|... +...+..+..++.+.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1223333323567777888777743 33455566677777777777763
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.56 E-value=0.0043 Score=33.34 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=8.5
Q ss_pred CCEEeCcCcccCCCCCccc
Q 036320 155 LYELDLSNNRFVGPFPNVV 173 (404)
Q Consensus 155 L~~L~Ls~n~l~~~~p~~l 173 (404)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 344333
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.03 E-value=0.0098 Score=31.92 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=4.4
Q ss_pred CEeeccCCcCc
Q 036320 300 ELLNLAHNMMS 310 (404)
Q Consensus 300 ~~L~L~~N~l~ 310 (404)
++|++++|+|+
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.61 E-value=0.074 Score=26.48 Aligned_cols=12 Identities=58% Similarity=0.803 Sum_probs=4.0
Q ss_pred CCEEEcccCcCC
Q 036320 275 LRVLDVSLNKLV 286 (404)
Q Consensus 275 L~~L~Ls~N~l~ 286 (404)
|+.|+|++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.50 E-value=0.12 Score=28.71 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=10.9
Q ss_pred CCCCEEEcccccCCCCCChhh
Q 036320 177 PMLNYLDIRFNEFEGPLPPEL 197 (404)
Q Consensus 177 ~~L~~L~L~~n~l~~~~p~~~ 197 (404)
++|++|+|++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45556666666655 455443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.50 E-value=0.12 Score=28.71 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=10.9
Q ss_pred CCCCEEEcccccCCCCCChhh
Q 036320 177 PMLNYLDIRFNEFEGPLPPEL 197 (404)
Q Consensus 177 ~~L~~L~L~~n~l~~~~p~~~ 197 (404)
++|++|+|++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45556666666655 455443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.54 E-value=0.0093 Score=52.50 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEee
Q 036320 224 NSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLN 303 (404)
Q Consensus 224 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 303 (404)
...+.||++.|++. .+-..+..+. .+..|+++.|.+. ..|..++....++.+++..|..+ ..|.++...++++.++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 33444444444433 2222333333 3444444444443 33444444444444444444443 3344444444444444
Q ss_pred ccCCc
Q 036320 304 LAHNM 308 (404)
Q Consensus 304 L~~N~ 308 (404)
+..|.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 44443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.20 E-value=0.0055 Score=53.89 Aligned_cols=82 Identities=18% Similarity=0.088 Sum_probs=67.0
Q ss_pred ccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEecc
Q 036320 250 SIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFS 329 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 329 (404)
..+.||++.|++- .+-..++-++.|..||++.|++. ..|..+.....++.+++..|..+ ..|.++...++++++++.
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 7788888888876 44455666788888899999888 78888888888888888888876 788888889999999888
Q ss_pred CCcCc
Q 036320 330 YNFFC 334 (404)
Q Consensus 330 ~N~l~ 334 (404)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88864
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.63 E-value=0.054 Score=54.06 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=15.9
Q ss_pred ccCCCCCCEeeccCCcCcccC-chhccCCCCC
Q 036320 293 IAGLAHLELLNLAHNMMSGIV-PEGVCLLPNL 323 (404)
Q Consensus 293 l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L 323 (404)
+..+++++.+.+.++.+.... -..+.+++.|
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 445666666666666633222 2334444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.36 E-value=0.33 Score=26.92 Aligned_cols=15 Identities=53% Similarity=0.629 Sum_probs=9.4
Q ss_pred CCCCEEeCcCcccCC
Q 036320 153 TLLYELDLSNNRFVG 167 (404)
Q Consensus 153 ~~L~~L~Ls~n~l~~ 167 (404)
++|++|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666663
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.36 E-value=0.33 Score=26.92 Aligned_cols=15 Identities=53% Similarity=0.629 Sum_probs=9.4
Q ss_pred CCCCEEeCcCcccCC
Q 036320 153 TLLYELDLSNNRFVG 167 (404)
Q Consensus 153 ~~L~~L~Ls~n~l~~ 167 (404)
++|++|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666663
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.43 E-value=0.17 Score=27.52 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=4.9
Q ss_pred CCCEeeccCCcCc
Q 036320 298 HLELLNLAHNMMS 310 (404)
Q Consensus 298 ~L~~L~L~~N~l~ 310 (404)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.30 E-value=0.09 Score=45.45 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=53.0
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCC-cccCC-CCCCCCEEeCcCc-ccCCCCCcccCCCCCCCE
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIV-PQTLS-NLTLLYELDLSNN-RFVGPFPNVVLSLPMLNY 181 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~ 181 (404)
-.++.+|-++..|.+.--+.+.+++.++.|.+.++.--+.- -+.++ -.++|+.|++++| +||..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 35788888888887655556777788888888776432110 01122 2367888888876 466444455667777877
Q ss_pred EEccc
Q 036320 182 LDIRF 186 (404)
Q Consensus 182 L~L~~ 186 (404)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77754
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.22 E-value=0.95 Score=45.05 Aligned_cols=108 Identities=11% Similarity=-0.017 Sum_probs=48.3
Q ss_pred CceEEccCCccCCC--CcccccCCCCcceeccccC-cCCCCCh---hHHHhhhcccceeEccCCC-CcccCCcccC-CCC
Q 036320 202 LDAIFVNNNRFTSM--IPQNFGSNNSASVLVIANN-KFGGCLP---PSVANLANSIEELLLINTS-ISGCLPPEVG-YLY 273 (404)
Q Consensus 202 L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~p---~~l~~l~~~L~~L~l~~n~-l~~~~p~~~~-~l~ 273 (404)
|+.+.+..+.-... .-.....++.|+.|+++++ ......+ ..+.....+|+.|+++++. +++..-..+. .++
T Consensus 190 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~ 269 (482)
T KOG1947|consen 190 LKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCP 269 (482)
T ss_pred hhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCC
Confidence 55555554422211 2233445566666666652 1110111 1122222356666666665 4432222222 255
Q ss_pred CCCEEEcccCc-CCCCCc-hhccCCCCCCEeeccCCcC
Q 036320 274 KLRVLDVSLNK-LVGPIP-YSIAGLAHLELLNLAHNMM 309 (404)
Q Consensus 274 ~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~L~~N~l 309 (404)
+|+.|.+.++. +++..- .....+++|++|+++++..
T Consensus 270 ~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 270 NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 66666655554 342211 2223455666666665543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.38 E-value=0.18 Score=43.66 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=17.3
Q ss_pred CceEEccCCccCCCCcccccCCCCcceeccccCc
Q 036320 202 LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNK 235 (404)
Q Consensus 202 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 235 (404)
++.++.++..|...--+.+..++.++.|.+.++.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 5555555555544333444555555555555543
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.21 E-value=1.8 Score=24.16 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=7.2
Q ss_pred CCCCEEEcccCcCC
Q 036320 273 YKLRVLDVSLNKLV 286 (404)
Q Consensus 273 ~~L~~L~Ls~N~l~ 286 (404)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.63 E-value=2.8 Score=23.72 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=9.7
Q ss_pred CCCcEEeccCCcCcc
Q 036320 321 PNLSNFTFSYNFFCE 335 (404)
Q Consensus 321 ~~L~~L~l~~N~l~~ 335 (404)
++|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356777777777653
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.46 E-value=2.7 Score=23.44 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=9.4
Q ss_pred CCCEEEcccccCCCCCCh
Q 036320 178 MLNYLDIRFNEFEGPLPP 195 (404)
Q Consensus 178 ~L~~L~L~~n~l~~~~p~ 195 (404)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555666666655 4543
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.77 E-value=25 Score=34.77 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=35.6
Q ss_pred CCCCEEECCCCcCCCCCcccCCC---CCCCCEEeCcCcccCC---CCCcccCCCCCCCEEEcccccCC
Q 036320 129 SDLALIHLNSNRFCGIVPQTLSN---LTLLYELDLSNNRFVG---PFPNVVLSLPMLNYLDIRFNEFE 190 (404)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~l~~---l~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~L~~n~l~ 190 (404)
..+.+++++.|.....+|..+.. -..++.++.+...++- .-+-..+.-++|...+++.|..+
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 34677788877777666654322 2456677776655541 11222334456777777776543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.04 E-value=3 Score=41.70 Aligned_cols=34 Identities=32% Similarity=0.269 Sum_probs=15.3
Q ss_pred ccceeEccCCCCccc--CCcccCCCCCCCEEEcccC
Q 036320 250 SIEELLLINTSISGC--LPPEVGYLYKLRVLDVSLN 283 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~N 283 (404)
.+..+.|++|++... +...-...++|..|+|++|
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 444555555554421 1111123445555666655
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.94 E-value=6.4 Score=39.44 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=44.3
Q ss_pred CCCCCCEEEcccCcCCCCC--chhccCCCCCCEeeccCCcCcccCchhccCC--CCCcEEeccCCcCcccC
Q 036320 271 YLYKLRVLDVSLNKLVGPI--PYSIAGLAHLELLNLAHNMMSGIVPEGVCLL--PNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 271 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~l~~N~l~~~~ 337 (404)
+.+.+..+.|++|++.... ...-...++|+.|+|++|...-....++..+ ..|+.|-+.+|.++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 4567788899999987331 1222346899999999993221122223222 35899999999998753
No 90
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=44.74 E-value=52 Score=24.97 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 036320 12 SHVILII 18 (404)
Q Consensus 12 ~~~~~~~ 18 (404)
|..++++
T Consensus 3 SK~~llL 9 (95)
T PF07172_consen 3 SKAFLLL 9 (95)
T ss_pred hhHHHHH
Confidence 3333333
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=40.23 E-value=17 Score=35.32 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=126.2
Q ss_pred CcEEEEEcCCCCCCccC--cccccCCCCCCEEECCCCc-CCCCCcccC-CCCCCCCEEeCcCc-ccCCCCCc-ccCCCCC
Q 036320 105 QVVSGIDLNNADIAGFL--PDELGLLSDLALIHLNSNR-FCGIVPQTL-SNLTLLYELDLSNN-RFVGPFPN-VVLSLPM 178 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~ 178 (404)
+.+++|.+.++.-.+.- ...-.+.+++++|.+.++. ++...-.++ ..+.+|++|+|..+ .++...-. .-..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 56777888877654432 2334567888888887764 332222222 24577888887773 34422111 2235677
Q ss_pred CCEEEccccc-CCCCCChhhhc----------------------------CCCceEEccCC-ccCCCCc-ccccCCCCcc
Q 036320 179 LNYLDIRFNE-FEGPLPPELFN----------------------------KKLDAIFVNNN-RFTSMIP-QNFGSNNSAS 227 (404)
Q Consensus 179 L~~L~L~~n~-l~~~~p~~~~~----------------------------~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~ 227 (404)
|++|+++.+. +++.--..+.. ..+..+++..+ .++..-- ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888877653 22210000000 01333333333 2222110 1113467889
Q ss_pred eeccccCc-CCCCChhHHHhhhcccceeEccCCCC-cccCCccc-CCCCCCCEEEcccCcCCCC--CchhccCCCCCCEe
Q 036320 228 VLVIANNK-FGGCLPPSVANLANSIEELLLINTSI-SGCLPPEV-GYLYKLRVLDVSLNKLVGP--IPYSIAGLAHLELL 302 (404)
Q Consensus 228 ~L~l~~n~-l~~~~p~~l~~l~~~L~~L~l~~n~l-~~~~p~~~-~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L 302 (404)
.|+.++.. ++...-..++.-..+|+.+.++.++- +..--..+ .+...|+.+++......-. +...-.+++.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 99988754 44334445555445899999998873 32111112 3467888888887755411 22222357889999
Q ss_pred eccCCcCcccC-----chhccCCCCCcEEeccCCcCcc
Q 036320 303 NLAHNMMSGIV-----PEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 303 ~L~~N~l~~~~-----p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
.++++.+.... ...-+.+..|+.+.|++...+.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 99988653221 2333566788888888887653
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=37.65 E-value=17 Score=35.35 Aligned_cols=205 Identities=14% Similarity=-0.004 Sum_probs=107.5
Q ss_pred CCCCEEECCCCcCCCCCc--ccCCCCCCCCEEeCcCcc-cCCCCCccc-CCCCCCCEEEcccc-cCCCCCChhhhc--CC
Q 036320 129 SDLALIHLNSNRFCGIVP--QTLSNLTLLYELDLSNNR-FVGPFPNVV-LSLPMLNYLDIRFN-EFEGPLPPELFN--KK 201 (404)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~~~~~--~~ 201 (404)
..|+.|.+++..=.+.-+ .....++++++|.+.++. ++...-..+ ..+++|++|+|..+ .++...-..+.. .+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357888888775443322 223467888888888775 332211112 35778888888873 333221121222 33
Q ss_pred CceEEccCCc-cCC--------------CC--------c-ccc----cCCCCcceeccccC-cCCCCChhHHHhhhcccc
Q 036320 202 LDAIFVNNNR-FTS--------------MI--------P-QNF----GSNNSASVLVIANN-KFGGCLPPSVANLANSIE 252 (404)
Q Consensus 202 L~~L~l~~n~-l~~--------------~~--------~-~~~----~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~~L~ 252 (404)
|++|+++++. +++ .. + ..+ +.+..+..+++..+ .+++.--..+......|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 7888877652 111 00 0 001 23344555665454 344322122222223678
Q ss_pred eeEccCCCCc-ccCCccc-CCCCCCCEEEcccCcC-CCCCchhc-cCCCCCCEeeccCCcCccc--CchhccCCCCCcEE
Q 036320 253 ELLLINTSIS-GCLPPEV-GYLYKLRVLDVSLNKL-VGPIPYSI-AGLAHLELLNLAHNMMSGI--VPEGVCLLPNLSNF 326 (404)
Q Consensus 253 ~L~l~~n~l~-~~~p~~~-~~l~~L~~L~Ls~N~l-~~~~p~~l-~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L 326 (404)
.|+.+++.-. ...-..+ .+..+|+.|.++.++. +..--..+ .+.+.|+.+++......-. +-.--.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 8888876542 2222222 3567888888888763 21111112 3467888888887754311 22222356788888
Q ss_pred eccCCcC
Q 036320 327 TFSYNFF 333 (404)
Q Consensus 327 ~l~~N~l 333 (404)
.+++..+
T Consensus 378 slshce~ 384 (483)
T KOG4341|consen 378 SLSHCEL 384 (483)
T ss_pred Chhhhhh
Confidence 8887764
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.84 E-value=31 Score=41.60 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=28.3
Q ss_pred EcccCcCCCCCchhccCCCCCCEeeccCCcCcc
Q 036320 279 DVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSG 311 (404)
Q Consensus 279 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 311 (404)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999996666788889999999999998864
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.68 E-value=35 Score=18.59 Aligned_cols=11 Identities=55% Similarity=0.498 Sum_probs=5.9
Q ss_pred CCCCEEeCcCc
Q 036320 153 TLLYELDLSNN 163 (404)
Q Consensus 153 ~~L~~L~Ls~n 163 (404)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555555
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.40 E-value=34 Score=41.34 Aligned_cols=32 Identities=34% Similarity=0.451 Sum_probs=28.3
Q ss_pred ECCCCcCCCCCcccCCCCCCCCEEeCcCcccC
Q 036320 135 HLNSNRFCGIVPQTLSNLTLLYELDLSNNRFV 166 (404)
Q Consensus 135 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 166 (404)
||++|+|+...+..|..+.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999777778999999999999999887
No 96
>PRK13617 psbV cytochrome c-550; Provisional
Probab=30.00 E-value=70 Score=27.09 Aligned_cols=15 Identities=47% Similarity=0.529 Sum_probs=7.5
Q ss_pred CCccchhhHHHHHHHH
Q 036320 1 MASFLFSAITSSHVIL 16 (404)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (404)
|++| ++.+..+.+++
T Consensus 1 m~s~-m~MLkr~~~~~ 15 (170)
T PRK13617 1 MASL-FSSLRRSLKRL 15 (170)
T ss_pred CchH-HHHHHHHHHHH
Confidence 7777 44344443333
No 97
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.89 E-value=1.3e+02 Score=30.03 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=11.9
Q ss_pred CCcEEeccCCcCcccC
Q 036320 322 NLSNFTFSYNFFCEEE 337 (404)
Q Consensus 322 ~L~~L~l~~N~l~~~~ 337 (404)
.+++|+...|.+.|..
T Consensus 355 R~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEG 370 (553)
T ss_pred eeeEeecccccccccc
Confidence 5788888888877643
Done!