Query 036320
Match_columns 404
No_of_seqs 450 out of 4005
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 19:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-44 1E-48 338.9 20.7 298 56-362 3-309 (313)
2 4eco_A Uncharacterized protein 100.0 6.2E-39 2.1E-43 330.5 17.1 297 54-362 25-450 (636)
3 3rgz_A Protein brassinosteroid 100.0 5.1E-38 1.7E-42 330.5 19.5 288 57-358 10-331 (768)
4 3rgz_A Protein brassinosteroid 100.0 1.1E-37 3.8E-42 328.0 21.4 285 104-389 393-753 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 3.8E-37 1.3E-41 324.1 19.1 291 54-362 264-690 (876)
6 4fcg_A Uncharacterized protein 100.0 3E-37 1E-41 292.8 15.5 276 54-335 22-315 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 8.5E-35 2.9E-39 287.8 24.9 276 105-380 30-410 (455)
8 2id5_A Lingo-1, leucine rich r 100.0 7.2E-33 2.5E-37 275.8 26.0 290 90-380 13-335 (477)
9 3v47_A TOLL-like receptor 5B a 100.0 4.2E-33 1.4E-37 275.7 19.4 261 101-362 75-412 (455)
10 1ogq_A PGIP-2, polygalacturona 100.0 9.8E-34 3.4E-38 266.9 13.1 250 129-380 50-306 (313)
11 3oja_B Anopheles plasmodium-re 100.0 5.1E-32 1.7E-36 277.1 20.0 272 104-380 50-360 (597)
12 3t6q_A CD180 antigen; protein- 100.0 7.9E-32 2.7E-36 276.1 21.2 277 101-380 274-562 (606)
13 1xku_A Decorin; proteoglycan, 100.0 5.5E-31 1.9E-35 249.8 24.6 266 86-359 29-307 (330)
14 4g8a_A TOLL-like receptor 4; l 100.0 2E-31 6.9E-36 273.7 23.0 137 105-241 52-190 (635)
15 3o6n_A APL1; leucine-rich repe 100.0 1E-31 3.5E-36 260.7 19.4 273 103-380 43-354 (390)
16 3vq2_A TLR4, TOLL-like recepto 100.0 7.4E-31 2.5E-35 268.9 23.6 157 223-380 398-560 (606)
17 2ft3_A Biglycan; proteoglycan, 100.0 2E-30 6.8E-35 246.2 23.7 263 87-358 32-307 (332)
18 1xku_A Decorin; proteoglycan, 100.0 3.2E-30 1.1E-34 244.5 24.7 264 106-379 32-307 (330)
19 3zyi_A Leucine-rich repeat-con 100.0 4.6E-31 1.6E-35 261.1 19.6 227 105-335 75-304 (452)
20 2id5_A Lingo-1, leucine rich r 100.0 4.6E-31 1.6E-35 262.8 18.8 258 101-359 52-334 (477)
21 4eco_A Uncharacterized protein 100.0 7E-32 2.4E-36 277.9 11.8 257 100-361 201-504 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-30 7.8E-35 263.1 22.5 88 101-191 72-160 (562)
23 2z7x_B TOLL-like receptor 1, v 100.0 1E-30 3.6E-35 263.0 19.2 85 103-190 43-128 (520)
24 2z66_A Variable lymphocyte rec 100.0 5.3E-31 1.8E-35 247.2 15.8 248 87-336 6-263 (306)
25 2ft3_A Biglycan; proteoglycan, 100.0 5.4E-30 1.8E-34 243.2 20.8 263 106-379 34-308 (332)
26 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-30 1.6E-34 266.5 21.9 277 103-380 327-624 (680)
27 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-30 1.2E-34 260.8 18.3 139 105-243 26-167 (549)
28 3zyj_A Leucine-rich repeat-con 100.0 5.5E-30 1.9E-34 252.5 19.4 228 105-335 64-293 (440)
29 3t6q_A CD180 antigen; protein- 100.0 1.2E-29 4.3E-34 259.7 22.5 255 106-362 255-517 (606)
30 2z7x_B TOLL-like receptor 1, v 100.0 6.1E-30 2.1E-34 257.3 19.3 106 105-213 21-128 (520)
31 2z66_A Variable lymphocyte rec 100.0 4.2E-30 1.4E-34 241.0 16.8 248 108-360 10-263 (306)
32 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-29 9.2E-34 266.7 24.7 263 100-362 68-379 (844)
33 3o6n_A APL1; leucine-rich repe 100.0 1.4E-29 4.6E-34 245.7 20.1 249 104-360 68-354 (390)
34 2z80_A TOLL-like receptor 2, v 100.0 2.2E-30 7.6E-35 248.0 14.4 255 105-361 52-317 (353)
35 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-29 8.6E-34 267.0 23.6 259 104-363 23-356 (844)
36 3zyj_A Leucine-rich repeat-con 100.0 3.6E-29 1.2E-33 246.7 22.7 243 109-358 47-292 (440)
37 2z63_A TOLL-like receptor 4, v 100.0 3.4E-29 1.2E-33 254.4 22.0 278 101-380 72-533 (570)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-29 8.6E-34 255.4 21.0 107 105-214 52-160 (562)
39 3oja_B Anopheles plasmodium-re 100.0 1.3E-29 4.3E-34 259.4 18.3 250 103-360 73-360 (597)
40 4fcg_A Uncharacterized protein 100.0 1.7E-29 6E-34 239.3 17.5 229 127-361 79-317 (328)
41 1ziw_A TOLL-like receptor 3; i 100.0 9.5E-29 3.2E-33 256.6 23.6 233 105-338 25-289 (680)
42 3zyi_A Leucine-rich repeat-con 100.0 8.6E-29 2.9E-33 244.8 22.0 243 110-358 59-303 (452)
43 2z81_A CD282 antigen, TOLL-lik 100.0 8.4E-29 2.9E-33 250.6 21.3 256 101-361 46-447 (549)
44 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-28 4E-33 228.9 20.4 226 108-337 14-241 (285)
45 1wwl_A Monocyte differentiatio 100.0 6.4E-31 2.2E-35 247.5 4.1 246 104-360 42-311 (312)
46 4ecn_A Leucine-rich repeat pro 100.0 1.3E-29 4.3E-34 267.0 14.2 184 101-290 444-661 (876)
47 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-29 1.1E-33 256.6 16.3 252 101-359 303-559 (606)
48 1ozn_A Reticulon 4 receptor; N 100.0 6.1E-29 2.1E-33 230.8 16.7 234 104-339 31-266 (285)
49 2z80_A TOLL-like receptor 2, v 100.0 2.9E-29 9.8E-34 240.2 14.7 274 85-380 27-316 (353)
50 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-27 6.3E-32 244.2 24.4 280 100-380 71-582 (635)
51 2o6q_A Variable lymphocyte rec 100.0 1.5E-27 5.1E-32 219.7 20.9 220 85-337 2-221 (270)
52 4fmz_A Internalin; leucine ric 100.0 7.7E-27 2.6E-31 222.5 23.0 244 101-362 84-328 (347)
53 1wwl_A Monocyte differentiatio 100.0 7E-29 2.4E-33 233.5 7.8 223 107-336 65-311 (312)
54 2z63_A TOLL-like receptor 4, v 100.0 4.1E-27 1.4E-31 239.1 20.9 133 106-238 29-163 (570)
55 4fmz_A Internalin; leucine ric 99.9 2.4E-26 8E-31 219.2 23.6 258 102-379 63-325 (347)
56 3o53_A Protein LRIM1, AGAP0063 99.9 4.7E-28 1.6E-32 228.4 11.5 216 105-334 34-250 (317)
57 2z62_A TOLL-like receptor 4, v 99.9 9.7E-27 3.3E-31 214.9 17.9 208 130-339 29-242 (276)
58 3oja_A Leucine-rich immune mol 99.9 3.1E-27 1.1E-31 235.6 13.9 217 104-334 33-250 (487)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-27 7.7E-32 223.7 12.1 240 105-358 10-250 (317)
60 1o6v_A Internalin A; bacterial 99.9 8.5E-26 2.9E-30 224.2 22.7 82 103-190 66-147 (466)
61 1o6v_A Internalin A; bacterial 99.9 8.2E-26 2.8E-30 224.3 22.4 242 101-361 86-347 (466)
62 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-25 6.5E-30 220.9 24.7 229 104-362 41-271 (457)
63 3oja_A Leucine-rich immune mol 99.9 6E-27 2E-31 233.6 13.2 218 127-358 32-250 (487)
64 2z62_A TOLL-like receptor 4, v 99.9 1.1E-25 3.6E-30 207.9 19.0 207 105-313 28-240 (276)
65 1p9a_G Platelet glycoprotein I 99.9 2.6E-25 8.8E-30 206.9 19.8 200 105-335 10-209 (290)
66 2o6q_A Variable lymphocyte rec 99.9 8.6E-25 3E-29 201.2 21.9 204 130-360 17-220 (270)
67 3bz5_A Internalin-J, INLJ; leu 99.9 8E-25 2.7E-29 216.4 22.4 240 101-364 60-337 (457)
68 3rfs_A Internalin B, repeat mo 99.9 1.3E-25 4.5E-30 207.0 15.5 217 110-340 24-241 (272)
69 1jl5_A Outer protein YOPM; leu 99.9 2.9E-26 1E-30 226.5 11.8 231 102-362 31-274 (454)
70 1jl5_A Outer protein YOPM; leu 99.9 6.3E-24 2.2E-28 209.8 24.1 226 105-360 131-372 (454)
71 3rfs_A Internalin B, repeat mo 99.9 7.7E-25 2.6E-29 201.8 16.3 208 103-322 39-247 (272)
72 1p9a_G Platelet glycoprotein I 99.9 3E-24 1E-28 199.7 18.2 179 105-311 31-209 (290)
73 3goz_A Leucine-rich repeat-con 99.9 7.4E-26 2.5E-30 217.3 7.6 250 110-360 3-299 (362)
74 4glp_A Monocyte differentiatio 99.9 5.4E-25 1.9E-29 206.7 13.1 223 106-335 65-308 (310)
75 3m19_A Variable lymphocyte rec 99.9 3.8E-24 1.3E-28 194.8 16.9 192 86-312 3-194 (251)
76 2ast_B S-phase kinase-associat 99.9 5.3E-26 1.8E-30 215.7 3.9 262 88-363 37-311 (336)
77 1h6u_A Internalin H; cell adhe 99.9 6.7E-24 2.3E-28 199.1 18.0 193 128-337 40-233 (308)
78 2xwt_C Thyrotropin receptor; s 99.9 3E-24 1E-28 193.9 14.3 195 106-331 32-236 (239)
79 3goz_A Leucine-rich repeat-con 99.9 2.5E-25 8.6E-30 213.6 7.6 231 105-336 22-299 (362)
80 2ca6_A RAN GTPase-activating p 99.9 4.7E-26 1.6E-30 220.5 1.8 232 105-337 32-319 (386)
81 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-23 4.6E-28 214.2 17.5 235 105-379 61-298 (622)
82 3m19_A Variable lymphocyte rec 99.9 2.4E-23 8.1E-28 189.5 17.2 182 130-338 15-196 (251)
83 2ca6_A RAN GTPase-activating p 99.9 2.3E-25 7.7E-30 215.7 2.7 240 121-361 24-319 (386)
84 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-22 1.1E-26 204.2 25.2 224 103-363 79-302 (622)
85 4glp_A Monocyte differentiatio 99.9 2.7E-24 9.2E-29 202.0 9.1 201 105-311 91-308 (310)
86 2xwt_C Thyrotropin receptor; s 99.9 1.6E-23 5.6E-28 189.0 12.7 196 129-355 31-236 (239)
87 2ast_B S-phase kinase-associat 99.9 3.7E-24 1.3E-28 203.0 5.6 233 105-342 70-314 (336)
88 1h6u_A Internalin H; cell adhe 99.9 1.7E-22 5.7E-27 189.6 16.6 191 104-311 40-231 (308)
89 3cvr_A Invasion plasmid antige 99.9 3.1E-23 1E-27 209.2 12.3 197 89-320 49-253 (571)
90 1z7x_W Ribonuclease inhibitor; 99.9 3.9E-25 1.3E-29 218.7 -2.6 229 106-335 86-384 (461)
91 1z7x_W Ribonuclease inhibitor; 99.9 5.8E-25 2E-29 217.5 -2.9 208 104-312 55-299 (461)
92 2o6s_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 176.7 14.9 162 129-298 28-190 (208)
93 4ay9_X Follicle-stimulating ho 99.9 3.4E-22 1.2E-26 190.9 15.1 241 87-334 8-259 (350)
94 3cvr_A Invasion plasmid antige 99.9 6.3E-22 2.1E-26 199.6 17.6 181 130-338 60-247 (571)
95 2o6s_A Variable lymphocyte rec 99.9 3.3E-21 1.1E-25 170.1 14.6 180 87-274 6-190 (208)
96 4ay9_X Follicle-stimulating ho 99.9 9.7E-22 3.3E-26 187.7 11.4 240 108-355 12-256 (350)
97 3e6j_A Variable lymphocyte rec 99.8 4.4E-20 1.5E-24 165.5 16.6 159 80-239 11-174 (229)
98 1h6t_A Internalin B; cell adhe 99.8 1.2E-20 4E-25 175.6 12.5 169 127-310 44-213 (291)
99 1h6t_A Internalin B; cell adhe 99.8 3.2E-20 1.1E-24 172.6 14.6 191 130-337 25-216 (291)
100 4b8c_D Glucose-repressible alc 99.8 3.8E-22 1.3E-26 207.8 1.5 199 56-265 129-357 (727)
101 2v9t_B SLIT homolog 2 protein 99.8 5.5E-20 1.9E-24 163.8 13.6 154 180-336 14-167 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 5.1E-20 1.8E-24 164.0 13.1 135 202-337 34-169 (220)
103 1m9s_A Internalin B; cell inva 99.8 5.1E-20 1.7E-24 187.5 12.8 169 104-287 42-211 (605)
104 3e6j_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 159.6 14.9 155 180-338 22-176 (229)
105 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.6E-24 173.6 12.1 175 132-310 21-202 (361)
106 1xeu_A Internalin C; cellular 99.8 2.4E-20 8.3E-25 170.8 5.6 170 104-288 18-187 (263)
107 2xot_A Amphoterin-induced prot 99.8 1.9E-19 6.4E-24 172.6 12.0 175 108-287 21-203 (361)
108 1m9s_A Internalin B; cell inva 99.8 4.5E-19 1.5E-23 180.5 15.3 190 106-312 22-212 (605)
109 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.3E-23 155.0 14.9 132 129-262 32-165 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-18 3.6E-23 155.5 13.8 155 132-313 14-169 (220)
111 1dce_A Protein (RAB geranylger 99.8 1.1E-21 3.8E-26 198.5 -7.8 190 127-339 347-551 (567)
112 4ezg_A Putative uncharacterize 99.8 1.1E-18 3.9E-23 152.5 11.6 152 126-309 41-193 (197)
113 1xeu_A Internalin C; cellular 99.8 5.4E-19 1.8E-23 161.8 8.8 170 127-336 17-187 (263)
114 4ezg_A Putative uncharacterize 99.8 1.4E-18 4.8E-23 151.9 10.3 154 150-335 41-195 (197)
115 4b8c_D Glucose-repressible alc 99.8 5.8E-19 2E-23 183.8 8.9 175 101-286 220-404 (727)
116 3ogk_B Coronatine-insensitive 99.8 3E-20 1E-24 189.4 -1.9 141 221-362 375-530 (592)
117 1dce_A Protein (RAB geranylger 99.7 2.6E-20 8.7E-25 188.5 -5.0 198 150-364 346-552 (567)
118 1w8a_A SLIT protein; signaling 99.7 9.4E-18 3.2E-22 146.1 9.6 112 225-337 30-142 (192)
119 3ogk_B Coronatine-insensitive 99.7 1E-19 3.5E-24 185.4 -3.7 252 105-359 164-502 (592)
120 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.7E-22 143.3 11.7 132 108-242 11-144 (192)
121 2ell_A Acidic leucine-rich nuc 99.7 6.6E-17 2.3E-21 137.4 9.1 133 105-262 24-160 (168)
122 2ell_A Acidic leucine-rich nuc 99.7 3.5E-16 1.2E-20 132.9 12.3 132 153-310 24-160 (168)
123 2wfh_A SLIT homolog 2 protein 99.7 4.2E-16 1.4E-20 135.7 12.8 128 203-335 13-140 (193)
124 2je0_A Acidic leucine-rich nuc 99.7 2.4E-16 8.1E-21 131.1 9.2 128 105-257 17-148 (149)
125 2je0_A Acidic leucine-rich nuc 99.6 5.4E-16 1.8E-20 129.0 10.7 128 129-282 17-149 (149)
126 2o6r_A Variable lymphocyte rec 99.6 9.7E-16 3.3E-20 131.3 12.2 132 203-338 10-141 (177)
127 2o6r_A Variable lymphocyte rec 99.6 1.6E-15 5.3E-20 130.0 12.4 132 180-314 10-141 (177)
128 2wfh_A SLIT homolog 2 protein 99.6 1.8E-15 6.2E-20 131.7 12.0 127 181-311 14-140 (193)
129 3sb4_A Hypothetical leucine ri 99.6 2.6E-16 8.7E-21 148.7 6.8 229 104-344 48-320 (329)
130 2p1m_B Transport inhibitor res 99.6 2.4E-17 8.2E-22 167.9 -3.4 205 151-358 287-519 (594)
131 2p1m_B Transport inhibitor res 99.6 7.6E-17 2.6E-21 164.2 -1.7 153 201-360 290-496 (594)
132 3sb4_A Hypothetical leucine ri 99.6 7.1E-15 2.4E-19 138.8 11.2 251 104-363 24-315 (329)
133 1ds9_A Outer arm dynein; leuci 99.6 3.8E-17 1.3E-21 142.9 -4.5 155 150-335 15-186 (198)
134 1a9n_A U2A', U2A'; complex (nu 99.6 7.1E-15 2.4E-19 125.8 8.5 131 173-309 15-152 (176)
135 1ds9_A Outer arm dynein; leuci 99.5 5.7E-17 2E-21 141.7 -5.3 154 125-310 14-185 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.9E-19 123.9 9.1 104 105-213 19-126 (176)
137 4fdw_A Leucine rich hypothetic 99.5 2.4E-13 8.2E-18 131.6 17.9 234 116-362 123-362 (401)
138 3g39_A Variable lymphocyte rec 99.5 2.5E-14 8.5E-19 121.8 9.7 109 226-338 11-119 (170)
139 2r9u_A Variable lymphocyte rec 99.5 5.3E-14 1.8E-18 120.2 9.7 108 227-338 15-122 (174)
140 3g39_A Variable lymphocyte rec 99.5 3.8E-13 1.3E-17 114.4 11.6 109 250-361 10-118 (170)
141 4fdw_A Leucine rich hypothetic 99.5 9.5E-13 3.2E-17 127.4 15.8 239 105-356 135-381 (401)
142 2r9u_A Variable lymphocyte rec 99.4 6.2E-13 2.1E-17 113.5 11.7 109 250-361 13-121 (174)
143 3un9_A NLR family member X1; l 99.4 9.9E-15 3.4E-19 140.0 -3.9 93 224-317 155-259 (372)
144 2ifg_A High affinity nerve gro 99.3 5.5E-12 1.9E-16 119.7 10.8 101 111-214 14-117 (347)
145 2ifg_A High affinity nerve gro 99.3 6.3E-12 2.2E-16 119.2 10.7 106 227-336 11-118 (347)
146 3un9_A NLR family member X1; l 99.3 1.7E-13 5.8E-18 131.4 -0.6 162 176-337 71-255 (372)
147 2ra8_A Uncharacterized protein 99.0 7.1E-11 2.4E-15 112.4 1.1 66 271-336 250-322 (362)
148 2ra8_A Uncharacterized protein 99.0 3.6E-10 1.2E-14 107.5 4.7 81 250-332 253-341 (362)
149 4fs7_A Uncharacterized protein 98.8 9.4E-08 3.2E-12 92.1 16.8 134 96-234 62-218 (394)
150 4gt6_A Cell surface protein; l 98.8 1.2E-07 4E-12 91.4 15.0 54 106-160 65-121 (394)
151 4fs7_A Uncharacterized protein 98.7 2.4E-07 8.1E-12 89.2 14.2 204 122-338 155-359 (394)
152 1io0_A Tropomodulin; LRR prote 98.6 3.9E-09 1.3E-13 90.7 0.6 114 220-334 32-164 (185)
153 4gt6_A Cell surface protein; l 98.6 1.6E-06 5.4E-11 83.4 16.7 107 99-209 81-191 (394)
154 3rw6_A Nuclear RNA export fact 98.4 3.8E-08 1.3E-12 89.1 1.5 76 250-327 171-257 (267)
155 1io0_A Tropomodulin; LRR prote 98.4 5.4E-08 1.9E-12 83.5 2.3 69 122-190 29-106 (185)
156 4h09_A Hypothetical leucine ri 98.3 4.2E-05 1.4E-09 72.8 19.4 84 250-336 241-324 (379)
157 3rw6_A Nuclear RNA export fact 98.3 2.4E-07 8.1E-12 83.9 2.3 80 221-303 167-257 (267)
158 4h09_A Hypothetical leucine ri 98.1 0.00011 3.6E-09 70.0 17.0 238 106-355 47-320 (379)
159 3e4g_A ATP synthase subunit S, 98.0 2.9E-06 1E-10 71.4 2.7 86 250-335 62-154 (176)
160 3e4g_A ATP synthase subunit S, 97.9 3E-06 1E-10 71.3 1.4 84 105-188 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 1.4E-05 4.8E-10 68.5 1.6 84 250-333 71-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 5.8E-05 2E-09 64.7 2.8 90 220-310 66-170 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.002 6.7E-08 51.3 6.6 55 109-165 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0021 7.2E-08 51.2 6.3 57 132-190 11-68 (130)
165 2lz0_A Uncharacterized protein 53.4 38 0.0013 24.7 6.4 45 117-162 8-52 (100)
166 2lz0_A Uncharacterized protein 46.2 29 0.00098 25.4 4.7 49 138-187 5-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.9e-44 Score=338.90 Aligned_cols=298 Identities=24% Similarity=0.392 Sum_probs=267.9
Q ss_pred CchHHHHHHHHHHHHcccCCCCCCCCCC-CCCCCc--ccceeeCCCCCCCCCCcEEEEEcCCCCCCc--cCcccccCCCC
Q 036320 56 KLHQAYIALQAWKKVIYSDPNNFTTNWV-GPSVCN--YRGIYCAPPPYDHKIQVVSGIDLNNADIAG--FLPDELGLLSD 130 (404)
Q Consensus 56 ~~~~~~~aL~~~k~~~~~~~~~~l~~w~-~~~~C~--w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~ 130 (404)
|.++|+.||++||+++ .+|. .+.+|. +.++|. |.||+|.... ...+|++|++++|++.+ .+|..|.++++
T Consensus 3 c~~~~~~aL~~~k~~~-~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDL-GNPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp SCHHHHHHHHHHHHHT-TCCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCHHHHHHHHHHHHhc-CCcc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 5688999999999998 4555 688995 567898 9999997421 12689999999999999 89999999999
Q ss_pred CCEEECCC-CcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEcc
Q 036320 131 LALIHLNS-NRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVN 208 (404)
Q Consensus 131 L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~ 208 (404)
|++|++++ |.+.+.+|..|+++++|++|++++|++++.+|..+.++++|++|++++|.+++.+|..+.... |++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 99999995 999999999999999999999999999999999999999999999999999999999888866 9999999
Q ss_pred CCccCCCCcccccCCC-CcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCC
Q 036320 209 NNRFTSMIPQNFGSNN-SASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVG 287 (404)
Q Consensus 209 ~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 287 (404)
+|++++.+|..+..++ +|++|++++|++++.+|..+..+. |++|++++|.+++..|..+..+++|++|+|++|++++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 9999999999999998 999999999999999999998874 9999999999999999999999999999999999997
Q ss_pred CCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCC-CCCCCC
Q 036320 288 PIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNC-FPEKPF 362 (404)
Q Consensus 288 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~-l~~~~~ 362 (404)
.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....++. ++.+++++|. +.+.|.
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~-L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR-FDVSAYANNKCLCGSPL 309 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGG-SCGGGTCSSSEEESTTS
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccc-cChHHhcCCCCccCCCC
Confidence 6665 88899999999999999999999999999999999999999999997654444 3448888886 665544
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.2e-39 Score=330.50 Aligned_cols=297 Identities=21% Similarity=0.296 Sum_probs=245.1
Q ss_pred CCCchHHHHHHHHHHHHcccCCCCCC-------CCCC-CCCCCcc---cceeeCCCCCCCCCCcEEEEEcCCCCCCccCc
Q 036320 54 NPKLHQAYIALQAWKKVIYSDPNNFT-------TNWV-GPSVCNY---RGIYCAPPPYDHKIQVVSGIDLNNADIAGFLP 122 (404)
Q Consensus 54 ~~~~~~~~~aL~~~k~~~~~~~~~~l-------~~w~-~~~~C~w---~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p 122 (404)
.....+|+.||.++++++.++.+... .+|. +.++|.| .||+|+. .++|+.|+|+++++.|.+|
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~------~~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS------NGRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT------TCCEEEEECTTSCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC------CCCEEEEEecCcccCCcCC
Confidence 34556799999999999866554432 3795 5789999 9999974 2799999999999999999
Q ss_pred ccccCCCCCCEEECCCCcC-------------------------------------------------------------
Q 036320 123 DELGLLSDLALIHLNSNRF------------------------------------------------------------- 141 (404)
Q Consensus 123 ~~l~~l~~L~~L~Ls~n~l------------------------------------------------------------- 141 (404)
+.++++++|++|+|++|.+
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 9999999999999998843
Q ss_pred -----------------CCCCcccCCCCCCCCEEeCcCcccCCC-----------------CCcccC--CCCCCCEEEcc
Q 036320 142 -----------------CGIVPQTLSNLTLLYELDLSNNRFVGP-----------------FPNVVL--SLPMLNYLDIR 185 (404)
Q Consensus 142 -----------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~L~ 185 (404)
++ +|..|+++++|++|+|++|++++. +|..+. ++++|++|+++
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 34 778899999999999999999985 899988 99999999999
Q ss_pred cccCCCCCChhhhcCC-CceEEccCCc-cCC-CCcccccCC------CCcceeccccCcCCCCChh--HHHhhhccccee
Q 036320 186 FNEFEGPLPPELFNKK-LDAIFVNNNR-FTS-MIPQNFGSN------NSASVLVIANNKFGGCLPP--SVANLANSIEEL 254 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~-L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~p~--~l~~l~~~L~~L 254 (404)
+|.+.+.+|..+.... |++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+. +|++|
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L 335 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGML 335 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEE
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEE
Confidence 9999999999888776 9999999998 888 788887776 89999999999998 8888 888888 89999
Q ss_pred EccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCC-CCEeeccCCcCcccCchhccCCC--CCcEEeccCC
Q 036320 255 LLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAH-LELLNLAHNMMSGIVPEGVCLLP--NLSNFTFSYN 331 (404)
Q Consensus 255 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~l~~N 331 (404)
++++|.++|.+| .+..+++|++|+|++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|+.|++++|
T Consensus 336 ~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred eCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC
Confidence 999999998888 7888888888888888888 77777888888 888888888887 6777666554 7888888888
Q ss_pred cCcccCCCCCC-------cCCCceeeecCCCCCCCCCC
Q 036320 332 FFCEEEGICNN-------LTSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 332 ~l~~~~~~~~~-------l~~~~~~l~l~~N~l~~~~~ 362 (404)
.+++.+|.... -...++.|++++|+|+++|.
T Consensus 413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 88776664332 12234557777777776664
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.1e-38 Score=330.54 Aligned_cols=288 Identities=22% Similarity=0.304 Sum_probs=167.0
Q ss_pred chHHHHHHHHHHHHcccCCCCCCCCCC-CCCCCcccceeeCCCCCCCCCCcEEEEEcCCCCCCcc---CcccccCCCCCC
Q 036320 57 LHQAYIALQAWKKVIYSDPNNFTTNWV-GPSVCNYRGIYCAPPPYDHKIQVVSGIDLNNADIAGF---LPDELGLLSDLA 132 (404)
Q Consensus 57 ~~~~~~aL~~~k~~~~~~~~~~l~~w~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~---~p~~l~~l~~L~ 132 (404)
.++|++||++||+++. ||. .+++|. +.++|.|+||+|+ .++|+.|||+++.+.|. +++.+.++++|+
T Consensus 10 ~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~-------~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 10 LYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR-------DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp HHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE-------TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC-------CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 3778999999999996 676 889995 6789999999996 26999999999999887 666555555555
Q ss_pred EEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCc--ccCCCCCCCEEEcccccCCCCCChhh-hcC-CCceEEcc
Q 036320 133 LIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPN--VVLSLPMLNYLDIRFNEFEGPLPPEL-FNK-KLDAIFVN 208 (404)
Q Consensus 133 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~~-~L~~L~l~ 208 (404)
.++++.+.+. .+|..|+++++|++|||++|.++|.+|. .++++++|++|++++|.+++.+|..+ ... .|++|+++
T Consensus 81 ~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 81 SLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp EEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred ccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 5555555443 2334455555555555555555555554 55555555555555555554444433 222 25555555
Q ss_pred CCccCCCCccc---ccCC----------------------CCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcc
Q 036320 209 NNRFTSMIPQN---FGSN----------------------NSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISG 263 (404)
Q Consensus 209 ~n~l~~~~~~~---~~~l----------------------~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 263 (404)
+|++++..+.. +.++ ++|++|++++|++.+.+|. +..++ +|++|++++|.+++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~-~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCS-ALQHLDISGNKLSG 237 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCC-SCCEEECCSSCCCS
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCC-CCCEEECcCCcCCC
Confidence 55555444433 3444 4455555555554444443 44444 45555555555554
Q ss_pred cCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCC-CCCcEEeccCCcCcccCCCCCC
Q 036320 264 CLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLL-PNLSNFTFSYNFFCEEEGICNN 342 (404)
Q Consensus 264 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~~~~~~ 342 (404)
.+|..+..+++|++|++++|++++.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|....
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 44445555555555555555554444432 44555555555555555555555443 5666666666666655554332
Q ss_pred cCCCceeeecCCCCCC
Q 036320 343 LTSKGIAYDDRWNCFP 358 (404)
Q Consensus 343 l~~~~~~l~l~~N~l~ 358 (404)
-...+++|++++|.+.
T Consensus 316 ~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 316 SCSLLESLALSSNNFS 331 (768)
T ss_dssp GCTTCCEEECCSSEEE
T ss_pred cCCCccEEECCCCccc
Confidence 2233444666666665
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-37 Score=327.97 Aligned_cols=285 Identities=27% Similarity=0.363 Sum_probs=242.1
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
..+++.|++++|.+++.+|..+.++++|++|++++|.+++.+|..|.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 45788888888888888888888889999999999998888888888889999999999999888888888889999999
Q ss_pred cccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 184 IRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
+++|++++.+|..+.... |++|++++|++++.+|..++.+++|++|++++|++.+.+|..+..++ +|++|++++|.++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccC
Confidence 999999888888887765 99999999999888888888889999999999999888888888888 8999999988887
Q ss_pred ccCCcc----------------------------------------------------------------------cCCC
Q 036320 263 GCLPPE----------------------------------------------------------------------VGYL 272 (404)
Q Consensus 263 ~~~p~~----------------------------------------------------------------------~~~l 272 (404)
|.+|.. +..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 766653 3345
Q ss_pred CCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeec
Q 036320 273 YKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDD 352 (404)
Q Consensus 273 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l 352 (404)
++|++|||++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|....-...+++||+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 78999999999999999999999999999999999999999999999999999999999999999965544445666999
Q ss_pred CCCCCCCCCCCC---CcccccccccCCCcccCC--CCCCCCC
Q 036320 353 RWNCFPEKPFQR---SNKVCEPVLEHPVECFEQ--HCSNGGS 389 (404)
Q Consensus 353 ~~N~l~~~~~~~---~~~~~~~~~~n~~~c~~~--~c~~~~~ 389 (404)
++|+++|..++. .......|.+||..|+.. .|.+...
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~ 753 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-
T ss_pred cCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCcc
Confidence 999999876543 233345788999999743 4544443
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.8e-37 Score=324.10 Aligned_cols=291 Identities=19% Similarity=0.284 Sum_probs=248.3
Q ss_pred CCCchHHHHHHHHHHHHcccCCCCCCCCCC------CCCC--Ccc------------cceeeCCCCCCCCCCcEEEEEcC
Q 036320 54 NPKLHQAYIALQAWKKVIYSDPNNFTTNWV------GPSV--CNY------------RGIYCAPPPYDHKIQVVSGIDLN 113 (404)
Q Consensus 54 ~~~~~~~~~aL~~~k~~~~~~~~~~l~~w~------~~~~--C~w------------~gv~c~~~~~~~~~~~l~~L~L~ 113 (404)
.....+|+.||++||+++. +| +|. ..++ |.| .||+|+. ..+|+.|+|+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~------~~~V~~L~Ls 331 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN------NGRVTGLSLA 331 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT------TSCEEEEECT
T ss_pred cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC------CCCEEEEECc
Confidence 3445679999999999984 44 563 2345 999 9999974 3799999999
Q ss_pred CCCCCccCcccccCCCCCCEEEC-CCCcCCCC------------------------------------------------
Q 036320 114 NADIAGFLPDELGLLSDLALIHL-NSNRFCGI------------------------------------------------ 144 (404)
Q Consensus 114 ~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~------------------------------------------------ 144 (404)
++++.|.+|+.|+++++|++|+| ++|.++|.
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 99999999999999999999999 77754433
Q ss_pred ----------------------------CcccCCCCCCCCEEeCcCcccCC-----------------CCCcccC--CCC
Q 036320 145 ----------------------------VPQTLSNLTLLYELDLSNNRFVG-----------------PFPNVVL--SLP 177 (404)
Q Consensus 145 ----------------------------~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~ 177 (404)
+|..|+++++|++|+|++|++++ .+|..+. +++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 77889999999999999999998 3888887 999
Q ss_pred CCCEEEcccccCCCCCChhhhcCC-CceEEccCCc-cCC-CCcccccCCC-------CcceeccccCcCCCCChh--HHH
Q 036320 178 MLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNR-FTS-MIPQNFGSNN-------SASVLVIANNKFGGCLPP--SVA 245 (404)
Q Consensus 178 ~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~p~--~l~ 245 (404)
+|++|+|++|.+.+.+|..+.... |++|++++|+ +++ .+|..++.++ +|++|++++|+++ .+|. .+.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 999999999999999999998876 9999999998 988 7887666555 9999999999999 8998 899
Q ss_pred hhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCC-CCEeeccCCcCcccCchhccCCCC--
Q 036320 246 NLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAH-LELLNLAHNMMSGIVPEGVCLLPN-- 322 (404)
Q Consensus 246 ~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~-- 322 (404)
.+. +|++|++++|.++ .+| .+..+++|+.|+|++|+++ .+|..+..+++ |+.|++++|+++ .+|..+..++.
T Consensus 571 ~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 571 KMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp TCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred cCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 998 9999999999999 788 8999999999999999999 88988999999 999999999998 78888877654
Q ss_pred CcEEeccCCcCcccCCCCC-Cc----CCCceeeecCCCCCCCCCC
Q 036320 323 LSNFTFSYNFFCEEEGICN-NL----TSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 323 L~~L~l~~N~l~~~~~~~~-~l----~~~~~~l~l~~N~l~~~~~ 362 (404)
|+.|++++|.+++.+|.+. .+ ...++.|++++|+|+++|.
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~ 690 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence 9999999999998776443 00 1134557777777776663
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3e-37 Score=292.75 Aligned_cols=276 Identities=21% Similarity=0.276 Sum_probs=237.3
Q ss_pred CCCchHHHHHHHHHHHHcccCCCCCCCCCC-----CCCCCcccceeeCCCCC---CCCCCcEEEEEcCCCCCCccCcccc
Q 036320 54 NPKLHQAYIALQAWKKVIYSDPNNFTTNWV-----GPSVCNYRGIYCAPPPY---DHKIQVVSGIDLNNADIAGFLPDEL 125 (404)
Q Consensus 54 ~~~~~~~~~aL~~~k~~~~~~~~~~l~~w~-----~~~~C~w~gv~c~~~~~---~~~~~~l~~L~L~~n~l~~~~p~~l 125 (404)
......++.||++||..+..++.++...|. ..++|.|.|+.|..... .....+++.|++++|++. .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 344567899999999998778877788893 46789999999952100 012468999999999998 578888
Q ss_pred cCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhc------
Q 036320 126 GLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFN------ 199 (404)
Q Consensus 126 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------ 199 (404)
.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 99999999999999999 78999999999999999999999 78999999999999999999998899988753
Q ss_pred ---C-CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCC
Q 036320 200 ---K-KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKL 275 (404)
Q Consensus 200 ---~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L 275 (404)
. .|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|.+.+.+|..+..+++|
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCT-TCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCC-CCCEEECcCCcchhhhHHHhcCCCCC
Confidence 3 4999999999988 67788888999999999999998 4677788887 89999999999888888889999999
Q ss_pred CEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcc
Q 036320 276 RVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 276 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
++|+|++|.+.+.+|..+..+++|++|++++|.+.+.+|+.+..+++|+.+++..|.+..
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 999999988888888888899999999999999888999999999999999988876654
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.5e-35 Score=287.84 Aligned_cols=276 Identities=19% Similarity=0.179 Sum_probs=206.1
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCC-cccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIV-PQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
+++++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56788888888888777777888888888888888776544 45677778888888888887777777777777777777
Q ss_pred cccccCCCCCChh--hhcCC-CceEEccCCccCCCCccc-ccCCCCcceeccccCcCCCCChhHHHhh------------
Q 036320 184 IRFNEFEGPLPPE--LFNKK-LDAIFVNNNRFTSMIPQN-FGSNNSASVLVIANNKFGGCLPPSVANL------------ 247 (404)
Q Consensus 184 L~~n~l~~~~p~~--~~~~~-L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~l~~l------------ 247 (404)
+++|++++.++.. +.... |++|++++|.+++..|.. +..+++|++|++++|++.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777776544433 43333 777777777777665554 5666677777776666665444433322
Q ss_pred ----------------------h---------------------------------------------------------
Q 036320 248 ----------------------A--------------------------------------------------------- 248 (404)
Q Consensus 248 ----------------------~--------------------------------------------------------- 248 (404)
.
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 1
Q ss_pred -----cccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCC
Q 036320 249 -----NSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNL 323 (404)
Q Consensus 249 -----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 323 (404)
.+|++|++++|.+.+..|..+..+++|++|+|++|++++..|..+.++++|++|++++|++++..+..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 145566666666666677888899999999999999998888899999999999999999998889999999999
Q ss_pred cEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCCC----CcccccccccCCCccc
Q 036320 324 SNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQR----SNKVCEPVLEHPVECF 380 (404)
Q Consensus 324 ~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~~----~~~~~~~~~~n~~~c~ 380 (404)
++|++++|.+++..|....-...+++|++++|+|++.|... +......+.+|++.|+
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 99999999999987754443444666999999999988643 3334456778999885
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-33 Score=275.83 Aligned_cols=290 Identities=20% Similarity=0.164 Sum_probs=233.4
Q ss_pred ccceeeCCCCC----CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCccc
Q 036320 90 YRGIYCAPPPY----DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRF 165 (404)
Q Consensus 90 w~gv~c~~~~~----~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 165 (404)
|..|.|..... ..-..+++.|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 55677754221 11235789999999999998888999999999999999999988888999999999999999999
Q ss_pred CCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHH
Q 036320 166 VGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSV 244 (404)
Q Consensus 166 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 244 (404)
++..+..|.++++|++|+|++|++++..+..+.... |++|++++|.+.+..+..|..+++|++|++++|++++..+..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 976667789999999999999999876676676655 9999999999998888889999999999999999986666667
Q ss_pred HhhhcccceeEccCCCCcccCCcccCCCCCC------------------------CEEEcccCcCCCCCchhccCCCCCC
Q 036320 245 ANLANSIEELLLINTSISGCLPPEVGYLYKL------------------------RVLDVSLNKLVGPIPYSIAGLAHLE 300 (404)
Q Consensus 245 ~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L------------------------~~L~Ls~N~l~~~~p~~l~~l~~L~ 300 (404)
..+. +|+.|++++|.+.+..+..+..+++| ++|+|++|++++..+..+..+++|+
T Consensus 173 ~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 173 SHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp TTCT-TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred cccC-CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 7777 89999999888887666666665554 4555555667644446788899999
Q ss_pred EeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCCC----CcccccccccCC
Q 036320 301 LLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQR----SNKVCEPVLEHP 376 (404)
Q Consensus 301 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~~----~~~~~~~~~~n~ 376 (404)
.|++++|++++..+..|..+++|+.|++++|++++..+....-...++.|++++|+|++++... +......+.+||
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 9999999999888888899999999999999999987754444444566999999999988532 233344667899
Q ss_pred Cccc
Q 036320 377 VECF 380 (404)
Q Consensus 377 ~~c~ 380 (404)
+.|+
T Consensus 332 l~c~ 335 (477)
T 2id5_A 332 LACD 335 (477)
T ss_dssp EECS
T ss_pred ccCc
Confidence 9886
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-33 Score=275.70 Aligned_cols=261 Identities=18% Similarity=0.159 Sum_probs=200.8
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCccc--CCCCCCCCEEeCcCcccCCCCCcc-cCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQT--LSNLTLLYELDLSNNRFVGPFPNV-VLSLP 177 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~ 177 (404)
+..+.++++|++++|.+++..|..|+++++|++|++++|.+++..+.. |.++++|++|++++|++++..|.. +.+++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 345667777777777777766777777777777777777776644443 667777777777777777665654 66777
Q ss_pred CCCEEEcccccCCCCCChhhhcC-----------------------------------CCceEEccCCccCCCCcccccC
Q 036320 178 MLNYLDIRFNEFEGPLPPELFNK-----------------------------------KLDAIFVNNNRFTSMIPQNFGS 222 (404)
Q Consensus 178 ~L~~L~L~~n~l~~~~p~~~~~~-----------------------------------~L~~L~l~~n~l~~~~~~~~~~ 222 (404)
+|++|++++|.+++..+..+... .|++|++++|++++..+..+..
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 77777777777775555444321 2666666666665433332211
Q ss_pred ---------------------------------------CCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcc
Q 036320 223 ---------------------------------------NNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISG 263 (404)
Q Consensus 223 ---------------------------------------l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 263 (404)
.++|++|++++|.+.+..|..+..++ +|++|++++|.+++
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINK 313 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccc
Confidence 14688888888888877888888888 99999999999999
Q ss_pred cCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCc
Q 036320 264 CLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNL 343 (404)
Q Consensus 264 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l 343 (404)
..|..+.++++|++|+|++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|+|++.++.....
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 98999999999999999999999888899999999999999999999888999999999999999999999987755433
Q ss_pred CCCceeeecCCCCCCCCCC
Q 036320 344 TSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 344 ~~~~~~l~l~~N~l~~~~~ 362 (404)
...++.|++++|.|++...
T Consensus 394 l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCBCCCTT
T ss_pred CCcccEEEccCCCcccCCC
Confidence 3445669999999987644
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.8e-34 Score=266.86 Aligned_cols=250 Identities=20% Similarity=0.254 Sum_probs=224.8
Q ss_pred CCCCEEECCCCcCCC--CCcccCCCCCCCCEEeCcC-cccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-Cce
Q 036320 129 SDLALIHLNSNRFCG--IVPQTLSNLTLLYELDLSN-NRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDA 204 (404)
Q Consensus 129 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~ 204 (404)
.+++.|++++|.+++ .+|..|.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.... |++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999999 8999999999999999995 999999999999999999999999999989999888866 999
Q ss_pred EEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCc
Q 036320 205 IFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNK 284 (404)
Q Consensus 205 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 284 (404)
|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+..+|++|++++|.+++.+|..+..++ |++|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999999999999999999999999999999999998876899999999999999999999987 9999999999
Q ss_pred CCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCCC
Q 036320 285 LVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQR 364 (404)
Q Consensus 285 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~~ 364 (404)
+++..|..+..+++|+.|++++|++++.+|. +..+++|++|++++|.+++.+|....-...+++|++++|+|++..+..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999977776 888999999999999999988864444445666999999998554432
Q ss_pred ---CcccccccccCCCccc
Q 036320 365 ---SNKVCEPVLEHPVECF 380 (404)
Q Consensus 365 ---~~~~~~~~~~n~~~c~ 380 (404)
+......+.+|+..|+
T Consensus 288 ~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TTGGGSCGGGTCSSSEEES
T ss_pred ccccccChHHhcCCCCccC
Confidence 2333456778998886
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=5.1e-32 Score=277.12 Aligned_cols=272 Identities=16% Similarity=0.167 Sum_probs=197.5
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
+.+++.+++++|.+.+..+..|.++++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..|..|.++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45677888888888776666678888888888888888877777888888888888888888877777788888888888
Q ss_pred cccccCCCCCChhh-hcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhh-------------
Q 036320 184 IRFNEFEGPLPPEL-FNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLA------------- 248 (404)
Q Consensus 184 L~~n~l~~~~p~~~-~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~------------- 248 (404)
|++|.++ .+|..+ .... |++|++++|.+++..+..|..+++|++|++++|.+++.-...+..+.
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 8888888 555554 4443 88888888888887777788888888888888887753222111110
Q ss_pred -----------------------cccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeecc
Q 036320 249 -----------------------NSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLA 305 (404)
Q Consensus 249 -----------------------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 305 (404)
.+|+.|++++|.+++ +..+..+++|++|+|++|.+++..|..+..+++|+.|+|+
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 134555555555553 2556777888888888888887777788888888888888
Q ss_pred CCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCCCCccc-ccccccCCCccc
Q 036320 306 HNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQRSNKV-CEPVLEHPVECF 380 (404)
Q Consensus 306 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~~~~~~-~~~~~~n~~~c~ 380 (404)
+|++++ +|..+..+++|+.|+|++|.+++.++....++. ++.|++++|.|++.++...+.. ...+.+|++.|.
T Consensus 287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT-CSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCC-CCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 888875 466667788888888888888865544333332 4458999999988876553333 346677888774
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=7.9e-32 Score=276.07 Aligned_cols=277 Identities=19% Similarity=0.151 Sum_probs=203.8
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCc-ccCCCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPN-VVLSLPML 179 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L 179 (404)
+..+.++++|++++|.++. +|..+.++++|++|++++|.+++..|..+.++++|++|++++|.+.+.++. .+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 3445666777777776663 555666677777777777777665566666677777777777766655543 36677777
Q ss_pred CEEEcccccCCCCC--ChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhH-HHhhhcccceeE
Q 036320 180 NYLDIRFNEFEGPL--PPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPS-VANLANSIEELL 255 (404)
Q Consensus 180 ~~L~L~~n~l~~~~--p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~~L~~L~ 255 (404)
++|++++|.+++.. +..+.... |++|++++|.+.+..+..+..+++|++|++++|++.+..+.. +..+. +|++|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCEEE
Confidence 77777777776433 44454444 888888888887777777888888888888888887665543 66666 888888
Q ss_pred ccCCCCcccCCcccCCCCCCCEEEcccCcCCCC---CchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCc
Q 036320 256 LINTSISGCLPPEVGYLYKLRVLDVSLNKLVGP---IPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNF 332 (404)
Q Consensus 256 l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~ 332 (404)
+++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 888888887888888888899999999888752 23567888899999999999988888889999999999999999
Q ss_pred CcccCCCCCCcCCCceeeecCCCCCCCCCCCC----CcccccccccCCCccc
Q 036320 333 FCEEEGICNNLTSKGIAYDDRWNCFPEKPFQR----SNKVCEPVLEHPVECF 380 (404)
Q Consensus 333 l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~~----~~~~~~~~~~n~~~c~ 380 (404)
+++..|........+ .|++++|+|++.+... +......+.+||+.|+
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 998877433333333 6999999999887643 3334457788999885
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=5.5e-31 Score=249.80 Aligned_cols=266 Identities=20% Similarity=0.184 Sum_probs=184.5
Q ss_pred CCCcccceeeCCCCC--C--CCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCc
Q 036320 86 SVCNYRGIYCAPPPY--D--HKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLS 161 (404)
Q Consensus 86 ~~C~w~gv~c~~~~~--~--~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 161 (404)
..|.|+.+.|..... . .....++.|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 446777777764211 0 113467778888888877666677778888888888888877767777788888888888
Q ss_pred CcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCC--CCcccccCCCCcceeccccCcCCC
Q 036320 162 NNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTS--MIPQNFGSNNSASVLVIANNKFGG 238 (404)
Q Consensus 162 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~ 238 (404)
+|+++ .+|..+. ++|++|++++|.+++..+..+.... |++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 88777 4554443 6788888888877744444444444 8888888877753 55666777778888888888777
Q ss_pred CChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhcc
Q 036320 239 CLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVC 318 (404)
Q Consensus 239 ~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 318 (404)
.+|..+. . +|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 185 ~l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 TIPQGLP--P-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp SCCSSCC--T-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred cCCcccc--c-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 4555443 3 7788888888877777777777788888888888877666667777778888888888777 6677777
Q ss_pred CCCCCcEEeccCCcCcccCCCCCCc------CCCceeeecCCCCCCC
Q 036320 319 LLPNLSNFTFSYNFFCEEEGICNNL------TSKGIAYDDRWNCFPE 359 (404)
Q Consensus 319 ~l~~L~~L~l~~N~l~~~~~~~~~l------~~~~~~l~l~~N~l~~ 359 (404)
.+++|++|++++|.|++..+....- ...+..+++++|.+..
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 7778888888888877765532211 1223346777776654
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=2e-31 Score=273.68 Aligned_cols=137 Identities=17% Similarity=0.127 Sum_probs=111.7
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
..+++|||++|+|++..+..|.++++|++|+|++|+|++..+++|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47889999999999887788999999999999999999877778999999999999999998777778889999999999
Q ss_pred ccccCCCCCChhhhcCC-CceEEccCCccCCC-CcccccCCCCcceeccccCcCCCCCh
Q 036320 185 RFNEFEGPLPPELFNKK-LDAIFVNNNRFTSM-IPQNFGSNNSASVLVIANNKFGGCLP 241 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p 241 (404)
++|++++..+..+.... |++|++++|.+++. .|..++.+++|++|++++|++++..+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 99998844334455544 88888888888753 56777888888888888887754433
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1e-31 Score=260.73 Aligned_cols=273 Identities=16% Similarity=0.170 Sum_probs=197.3
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.+.+++.|+++++.+....+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34678888888888877666667888888888888888887777788888888888888888887777778888888888
Q ss_pred EcccccCCCCCChhh-hcC-CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhh------------
Q 036320 183 DIRFNEFEGPLPPEL-FNK-KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLA------------ 248 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~-~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~------------ 248 (404)
++++|+++ .+|..+ ... .|++|++++|.+++..+..+..+++|++|++++|++++.-...+..+.
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 88888888 666654 333 388888888888887777788888888888888888743222111110
Q ss_pred ------------------------cccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeec
Q 036320 249 ------------------------NSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNL 304 (404)
Q Consensus 249 ------------------------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 304 (404)
.+|++|++++|.+++. ..+..+++|++|+|++|.+++..|..+..+++|++|++
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 1344455555555432 35667778888888888887766777778888888888
Q ss_pred cCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCCCCccc-ccccccCCCccc
Q 036320 305 AHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQRSNKV-CEPVLEHPVECF 380 (404)
Q Consensus 305 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~~~~~~-~~~~~~n~~~c~ 380 (404)
++|++++ +|..+..+++|+.|++++|++++.++....++. ++.|++++|.|++.++...+.. ...+.+|++.|.
T Consensus 280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT-CSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCc-CCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 8888874 455566778888888888888765544333322 4448899999888876553333 346678888874
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=7.4e-31 Score=268.85 Aligned_cols=157 Identities=14% Similarity=0.031 Sum_probs=109.8
Q ss_pred CCCcceeccccCcCCCCCh-hHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCC-CCchhccCCCCCC
Q 036320 223 NNSASVLVIANNKFGGCLP-PSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVG-PIPYSIAGLAHLE 300 (404)
Q Consensus 223 l~~L~~L~l~~n~l~~~~p-~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~ 300 (404)
+++|++|++++|++.+..| ..+..++ +|++|++++|.+.+..|..+.++++|++|++++|++++ .+|..+..+++|+
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCeeECCCCccCCccChhhhhccc-cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 3344444444444443333 3444555 67777777777776677777777777778887777776 3577778888888
Q ss_pred EeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCCC---Cc-ccccccccCC
Q 036320 301 LLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQR---SN-KVCEPVLEHP 376 (404)
Q Consensus 301 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~~---~~-~~~~~~~~n~ 376 (404)
+|++++|++++..|..+..+++|+.|++++|++++.+|........++.||+++|+|+.+|... +. .....+.+||
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence 8888888888888888888888888999888888876654333334556999999999888642 21 3344678899
Q ss_pred Cccc
Q 036320 377 VECF 380 (404)
Q Consensus 377 ~~c~ 380 (404)
+.|+
T Consensus 557 ~~c~ 560 (606)
T 3vq2_A 557 VACI 560 (606)
T ss_dssp CCCS
T ss_pred cccC
Confidence 9996
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2e-30 Score=246.17 Aligned_cols=263 Identities=22% Similarity=0.193 Sum_probs=211.2
Q ss_pred CCcccceeeCCCCC----CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcC
Q 036320 87 VCNYRGIYCAPPPY----DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSN 162 (404)
Q Consensus 87 ~C~w~gv~c~~~~~----~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 162 (404)
.|.|+.+.|..... ....++++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 46788888864221 11235788999999999988788899999999999999999988888899999999999999
Q ss_pred cccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCC--CCcccccCCCCcceeccccCcCCCC
Q 036320 163 NRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTS--MIPQNFGSNNSASVLVIANNKFGGC 239 (404)
Q Consensus 163 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~ 239 (404)
|+++ .+|..+. ++|++|++++|++++..+..+.... |++|++++|.++. ..+..+..+ +|++|++++|+++ .
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-G 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-S
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-c
Confidence 9998 5565544 7899999999999844344455544 9999999999863 667777777 8999999999988 4
Q ss_pred ChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccC
Q 036320 240 LPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCL 319 (404)
Q Consensus 240 ~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 319 (404)
+|..+. . +|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 187 l~~~~~--~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDLP--E-TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSSC--S-SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCcccc--C-CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 666544 3 8999999999999887788999999999999999999877778889999999999999998 77888889
Q ss_pred CCCCcEEeccCCcCcccCCCCCC-c-----CCCceeeecCCCCCC
Q 036320 320 LPNLSNFTFSYNFFCEEEGICNN-L-----TSKGIAYDDRWNCFP 358 (404)
Q Consensus 320 l~~L~~L~l~~N~l~~~~~~~~~-l-----~~~~~~l~l~~N~l~ 358 (404)
+++|+.|++++|+|++..+.... . ...+..+++++|.+.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99999999999999887664221 1 223445888888877
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.2e-30 Score=244.47 Aligned_cols=264 Identities=20% Similarity=0.235 Sum_probs=226.5
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
+++.++++++.++. +|..+. +.|++|++++|.+++..+..|.++++|++|++++|++++..|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56789999999886 565443 789999999999998878789999999999999999998889999999999999999
Q ss_pred cccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCC--CChhHHHhhhcccceeEccCCCCcc
Q 036320 186 FNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGG--CLPPSVANLANSIEELLLINTSISG 263 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~~L~~L~l~~n~l~~ 263 (404)
+|+++ .+|..+. ..|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+. +|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-CcCEEECCCCcccc
Confidence 99998 7887765 569999999999999888889999999999999999963 6677888888 99999999999984
Q ss_pred cCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCc
Q 036320 264 CLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNL 343 (404)
Q Consensus 264 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l 343 (404)
+|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++..+..+..+
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 262 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccC
Confidence 565543 89999999999999888899999999999999999999888888999999999999999999655544444
Q ss_pred CCCceeeecCCCCCCCCCCCCC----------cccccccccCCCcc
Q 036320 344 TSKGIAYDDRWNCFPEKPFQRS----------NKVCEPVLEHPVEC 379 (404)
Q Consensus 344 ~~~~~~l~l~~N~l~~~~~~~~----------~~~~~~~~~n~~~c 379 (404)
+ .+++|++++|+|++++.... ......+.+||+.+
T Consensus 263 ~-~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 263 K-YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp S-SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred C-CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 3 35569999999999875332 22234567888865
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=4.6e-31 Score=261.12 Aligned_cols=227 Identities=21% Similarity=0.190 Sum_probs=201.5
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999999988999999999999999999999888889999999999999999999877778999999999999
Q ss_pred ccccCCCCCCh-hhhcCC-CceEEccCC-ccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCC
Q 036320 185 RFNEFEGPLPP-ELFNKK-LDAIFVNNN-RFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSI 261 (404)
Q Consensus 185 ~~n~l~~~~p~-~~~~~~-L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 261 (404)
++|+++ .++. .+.... |++|++++| .+....+..|..+++|++|++++|++++ +| .+..+. +|++|++++|.+
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~-~L~~L~Ls~N~l 230 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLV-GLEELEMSGNHF 230 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCT-TCCEEECTTSCC
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccc-cccEEECcCCcC
Confidence 999998 4554 444444 999999984 4554444568899999999999999984 55 366777 899999999999
Q ss_pred cccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcc
Q 036320 262 SGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 262 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
++..|..+.++++|++|+|++|++++..+..+.++++|+.|+|++|+|++..+..+..+++|+.|+|++|.+..
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 99889999999999999999999998888889999999999999999998778888899999999999998764
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=262.80 Aligned_cols=258 Identities=18% Similarity=0.134 Sum_probs=177.6
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLN 180 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 180 (404)
+..+.++++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|+
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 34455666666666666666566666666666666666666654444556666666666666666655555555566666
Q ss_pred EEEcccccCCCCCChhhhcCC-CceEEccCCccCCC------------------------CcccccCCCCcceeccccCc
Q 036320 181 YLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSM------------------------IPQNFGSNNSASVLVIANNK 235 (404)
Q Consensus 181 ~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~ 235 (404)
+|++++|.+++..+..+.... |++|++++|++++. .+..|..+++|++|++++|.
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 666665555543333333332 55555555555544 34444455555555555555
Q ss_pred CCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCch
Q 036320 236 FGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPE 315 (404)
Q Consensus 236 l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 315 (404)
+.+.+|....... +|++|++++|.+++..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|++++..|.
T Consensus 212 ~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 212 YLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp TCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred cccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 4444555444444 678888888888855556788999999999999999988788899999999999999999999999
Q ss_pred hccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCC
Q 036320 316 GVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPE 359 (404)
Q Consensus 316 ~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~ 359 (404)
.|..+++|+.|++++|.|++..+........++.|++++|.+..
T Consensus 291 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 99999999999999999998877544333445569999998863
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=7e-32 Score=277.92 Aligned_cols=257 Identities=18% Similarity=0.208 Sum_probs=191.6
Q ss_pred CCCCCCcEEEEEcCCCCCCcc-----------------Cccccc--CCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeC
Q 036320 100 YDHKIQVVSGIDLNNADIAGF-----------------LPDELG--LLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDL 160 (404)
Q Consensus 100 ~~~~~~~l~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 160 (404)
....+.++++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..|+++++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 355678899999999999986 888888 9999999999999999999999999999999999
Q ss_pred cCcc-cCC-CCCcccCCC------CCCCEEEcccccCCCCCCh--hhhcCC-CceEEccCCccCCCCcccccCCCCccee
Q 036320 161 SNNR-FVG-PFPNVVLSL------PMLNYLDIRFNEFEGPLPP--ELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVL 229 (404)
Q Consensus 161 s~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L 229 (404)
++|+ ++| .+|..+.++ ++|++|++++|+++ .+|. .+.... |++|++++|+++|.+| .+..+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 9998 888 788877776 88999999999988 8887 677665 8888888888887777 77777888888
Q ss_pred ccccCcCCCCChhHHHhhhcc-cceeEccCCCCcccCCcccCCCC--CCCEEEcccCcCCCCCchhcc-------CCCCC
Q 036320 230 VIANNKFGGCLPPSVANLANS-IEELLLINTSISGCLPPEVGYLY--KLRVLDVSLNKLVGPIPYSIA-------GLAHL 299 (404)
Q Consensus 230 ~l~~n~l~~~~p~~l~~l~~~-L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L 299 (404)
++++|+++ .+|..+..+. + |++|++++|.++ .+|..+...+ +|++|++++|++++.+|..+. .+++|
T Consensus 359 ~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp ECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred ECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 88888877 7777777777 5 888888888777 6666665544 677777777777766666665 55667
Q ss_pred CEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCC-------CceeeecCCCCCCCCC
Q 036320 300 ELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTS-------KGIAYDDRWNCFPEKP 361 (404)
Q Consensus 300 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~-------~~~~l~l~~N~l~~~~ 361 (404)
++|++++|++++..+..+..+++|++|++++|.++...+....... .++.|++++|+|+++|
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence 7777777776633333344566666666666666633332222111 3334566666665554
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.3e-30 Score=263.08 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCC-CCcccCCCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGP-FPNVVLSLPML 179 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L 179 (404)
+..+.++++|++++|.+++..|..|.++++|++|++++|+++ .+|.. .+++|++|++++|++++. +|..|.++++|
T Consensus 72 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 345667777777777777776777777777777777777777 45544 677777777777777752 45677777777
Q ss_pred CEEEcccccCCC
Q 036320 180 NYLDIRFNEFEG 191 (404)
Q Consensus 180 ~~L~L~~n~l~~ 191 (404)
++|++++|++++
T Consensus 149 ~~L~L~~n~l~~ 160 (562)
T 3a79_B 149 TFLGLSAAKFRQ 160 (562)
T ss_dssp CEEEEECSBCCT
T ss_pred cEEecCCCcccc
Confidence 777777777653
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=262.97 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=60.4
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCC-CCCcccCCCCCCCE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVG-PFPNVVLSLPMLNY 181 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~ 181 (404)
.+.++++|++++|++++..|..|+++++|++|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 4567777777777777766777777777777777777777 35544 67777777777777775 35667777777777
Q ss_pred EEcccccCC
Q 036320 182 LDIRFNEFE 190 (404)
Q Consensus 182 L~L~~n~l~ 190 (404)
|++++|.++
T Consensus 120 L~L~~n~l~ 128 (520)
T 2z7x_B 120 LGLSTTHLE 128 (520)
T ss_dssp EEEEESSCC
T ss_pred EEecCcccc
Confidence 777777654
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.3e-31 Score=247.15 Aligned_cols=248 Identities=20% Similarity=0.239 Sum_probs=164.0
Q ss_pred CCcccceeeCCCCC----CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCC--CcccCCCCCCCCEEeC
Q 036320 87 VCNYRGIYCAPPPY----DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGI--VPQTLSNLTLLYELDL 160 (404)
Q Consensus 87 ~C~w~gv~c~~~~~----~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L 160 (404)
.|.|.++.|..... .....++++|++++|++++..+..|.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 47888888875221 11224677777777777765445567777777777777777632 2455566777777777
Q ss_pred cCcccCCCCCcccCCCCCCCEEEcccccCCCCCC-hhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCC
Q 036320 161 SNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLP-PELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGG 238 (404)
Q Consensus 161 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 238 (404)
++|.++ .+|..+..+++|++|++++|++++..+ ..+.... |++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 777776 455567777777777777777763322 2333333 7777777777776666666667777777777777664
Q ss_pred -CChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhc
Q 036320 239 -CLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGV 317 (404)
Q Consensus 239 -~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 317 (404)
.+|..+..+. +|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|++++|++++..|..+
T Consensus 165 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 165 NFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred ccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 3555566665 67777777777776666666667777777777777765555566666777777777777766666666
Q ss_pred cCCC-CCcEEeccCCcCccc
Q 036320 318 CLLP-NLSNFTFSYNFFCEE 336 (404)
Q Consensus 318 ~~l~-~L~~L~l~~N~l~~~ 336 (404)
..++ +|++|++++|.+++.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEECTTCCEECS
T ss_pred HhhhccCCEEEccCCCeecc
Confidence 6663 677777777776654
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.4e-30 Score=243.21 Aligned_cols=263 Identities=19% Similarity=0.254 Sum_probs=223.8
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
+++.+++++++++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 56789999999985 565553 789999999999998878899999999999999999998889999999999999999
Q ss_pred cccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCC--CCChhHHHhhhcccceeEccCCCCcc
Q 036320 186 FNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFG--GCLPPSVANLANSIEELLLINTSISG 263 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~~L~~L~l~~n~l~~ 263 (404)
+|+++ .+|..+. ..|++|++++|.+++..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCc
Confidence 99998 7887776 56999999999999887778999999999999999996 3556666555 79999999999995
Q ss_pred cCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCc
Q 036320 264 CLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNL 343 (404)
Q Consensus 264 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l 343 (404)
+|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++..+..+..+
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 263 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcC
Confidence 565553 79999999999999888889999999999999999999888889999999999999999999655444443
Q ss_pred CCCceeeecCCCCCCCCCCCCC----------cccccccccCCCcc
Q 036320 344 TSKGIAYDDRWNCFPEKPFQRS----------NKVCEPVLEHPVEC 379 (404)
Q Consensus 344 ~~~~~~l~l~~N~l~~~~~~~~----------~~~~~~~~~n~~~c 379 (404)
+ .+++|++++|+|++.+.... ......+.+||+.+
T Consensus 264 ~-~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 264 K-LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp T-TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred c-cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 3 35569999999999875432 12234567888864
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.6e-30 Score=266.47 Aligned_cols=277 Identities=20% Similarity=0.201 Sum_probs=219.1
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCC--cccCCC--CCCCCEEeCcCcccCCCCCcccCCCCC
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIV--PQTLSN--LTLLYELDLSNNRFVGPFPNVVLSLPM 178 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 178 (404)
.+.+++.|++++|.+.+..+..|.++++|++|++++|.+.... ...|.. .++|++|++++|++++..|..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 4566777777777777766666777777777777777654321 122222 246777788888888888888999999
Q ss_pred CCEEEcccccCCCCCCh-hhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCC--CCChhHHHhhhccccee
Q 036320 179 LNYLDIRFNEFEGPLPP-ELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFG--GCLPPSVANLANSIEEL 254 (404)
Q Consensus 179 L~~L~L~~n~l~~~~p~-~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~~L~~L 254 (404)
|++|++++|.+++.+|. .+.... |++|++++|++.+..+..|..+++|+.|++++|.+. +.+|..+..+. +|++|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC-CCCEE
Confidence 99999999999876764 444444 999999999999888888999999999999999886 56788888888 99999
Q ss_pred EccCCCCcccCCcccCCCCCCCEEEcccCcCCCCC--------chhccCCCCCCEeeccCCcCcccCchhccCCCCCcEE
Q 036320 255 LLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPI--------PYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNF 326 (404)
Q Consensus 255 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 326 (404)
++++|++++..+..+.++++|++|+|++|++++.. +..+.++++|++|++++|+++...+..|..+++|+.|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 99999999888888999999999999999998531 1237889999999999999995555679999999999
Q ss_pred eccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCC-----CCcccccccccCCCccc
Q 036320 327 TFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQ-----RSNKVCEPVLEHPVECF 380 (404)
Q Consensus 327 ~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~-----~~~~~~~~~~~n~~~c~ 380 (404)
++++|++++.++........++.|++++|+|++.+.. .+......+.+|||.|+
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 9999999988776544334456699999999998853 24445567789999997
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.4e-30 Score=260.83 Aligned_cols=139 Identities=22% Similarity=0.225 Sum_probs=97.0
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.++++|++++|++++..|..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57888888888888877777888888888888888888777777888888888888888888766666888888888888
Q ss_pred ccccCCC-CCChhhhcCC-CceEEccCCccCCCCc-ccccCCCCcceeccccCcCCCCChhH
Q 036320 185 RFNEFEG-PLPPELFNKK-LDAIFVNNNRFTSMIP-QNFGSNNSASVLVIANNKFGGCLPPS 243 (404)
Q Consensus 185 ~~n~l~~-~~p~~~~~~~-L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~ 243 (404)
++|.+++ ..|..+.... |++|++++|.+.+.++ ..+..+++|++|++++|++++..|..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 8887774 2344444443 7777776666333332 45555666666666666555444433
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=5.5e-30 Score=252.54 Aligned_cols=228 Identities=19% Similarity=0.173 Sum_probs=201.9
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
..++.|+|++|++.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57889999999999988899999999999999999999888889999999999999999999777778999999999999
Q ss_pred ccccCCCCCChhhhcCC-CceEEccCC-ccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 185 RFNEFEGPLPPELFNKK-LDAIFVNNN-RFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~-L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
++|.++...+..+.... |++|++++| .+....+..|..+++|++|++++|+++ .+|. +..+. +|++|++++|.++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~-~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI-KLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCS-SCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCc-ccCEEECCCCccC
Confidence 99999844344455544 999999985 455444557899999999999999998 5664 66777 8999999999999
Q ss_pred ccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcc
Q 036320 263 GCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 263 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
+..|..+.++++|++|+|++|++++..+..+.++++|+.|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 9889999999999999999999998888889999999999999999998888888999999999999999754
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.2e-29 Score=259.75 Aligned_cols=255 Identities=19% Similarity=0.126 Sum_probs=228.3
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
.++.|++++|.+.+..+..|+.+++|++|++++|.++ .+|..+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7999999999999988888999999999999999999 688889999999999999999998888899999999999999
Q ss_pred cccCCCCCChh-hhcCC-CceEEccCCccCCCC--cccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCC
Q 036320 186 FNEFEGPLPPE-LFNKK-LDAIFVNNNRFTSMI--PQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSI 261 (404)
Q Consensus 186 ~n~l~~~~p~~-~~~~~-L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 261 (404)
+|.+.+.++.. +.... |++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..++ +|++|++++|.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 412 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAFTRL 412 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT-TCSEEECTTCCE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc-cCCeEECCCCcC
Confidence 99998877765 44444 999999999999766 67899999999999999999988888888888 999999999999
Q ss_pred cccCCc-ccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCccc---CchhccCCCCCcEEeccCCcCcccC
Q 036320 262 SGCLPP-EVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGI---VPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 262 ~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|+.|++++|.+++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 977654 488999999999999999988899999999999999999999873 3367889999999999999999998
Q ss_pred CCCCCcCCCceeeecCCCCCCCCCC
Q 036320 338 GICNNLTSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 338 ~~~~~l~~~~~~l~l~~N~l~~~~~ 362 (404)
|........++.|++++|+|++.++
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred hhhhccccCCCEEECCCCccCcCCh
Confidence 7654444456669999999998764
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.1e-30 Score=257.34 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
+++++|++++|.+.+..|..|.++++|++|++++|++++..|..|+++++|++|+|++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 68999999999999988889999999999999999999888999999999999999999999 56655 8999999999
Q ss_pred ccccCCC-CCChhhhcCC-CceEEccCCccC
Q 036320 185 RFNEFEG-PLPPELFNKK-LDAIFVNNNRFT 213 (404)
Q Consensus 185 ~~n~l~~-~~p~~~~~~~-L~~L~l~~n~l~ 213 (404)
++|.+++ .+|..+.... |++|++++|.++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccc
Confidence 9999986 4777777655 888888777664
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.2e-30 Score=241.02 Aligned_cols=248 Identities=21% Similarity=0.246 Sum_probs=215.8
Q ss_pred EEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCC--CCcccCCCCCCCEEEcc
Q 036320 108 SGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGP--FPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 108 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~ 185 (404)
+.+++++++++. +|..+ .++|++|++++|+++...+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 478999999887 45444 37899999999999965556689999999999999999833 36677789999999999
Q ss_pred cccCCCCCChhhhcCC-CceEEccCCccCCCCc-ccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcc
Q 036320 186 FNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIP-QNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISG 263 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 263 (404)
+|.++ .+|..+.... |++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCcccc
Confidence 99998 6777666655 9999999999998665 5789999999999999999988888888888 99999999999987
Q ss_pred -cCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCC-CC
Q 036320 264 -CLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGI-CN 341 (404)
Q Consensus 264 -~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~-~~ 341 (404)
.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+. +.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 6788999999999999999999988888999999999999999999988787899999999999999999998774 33
Q ss_pred CcCCCceeeecCCCCCCCC
Q 036320 342 NLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 342 ~l~~~~~~l~l~~N~l~~~ 360 (404)
.+...+++|++++|.|+..
T Consensus 245 ~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCTTCCEEECTTCCEECS
T ss_pred hhhccCCEEEccCCCeecc
Confidence 4444567799999999764
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=266.74 Aligned_cols=263 Identities=21% Similarity=0.202 Sum_probs=192.5
Q ss_pred CCCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCccc--CCCCCCCCEEeCcCcccCCCCC-cccCCC
Q 036320 100 YDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQT--LSNLTLLYELDLSNNRFVGPFP-NVVLSL 176 (404)
Q Consensus 100 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l 176 (404)
.+..+.+++.|+|++|.+.+..|..|+++++|++|+|++|.+++.++.. |.++++|++|+|++|.+++..+ ..|+++
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence 3455677777777777777777777777777777777777777655544 7777777777777777776544 467777
Q ss_pred CCCCEEEcccccCCCCCChhhhc---CCCceEEccCCccCCCCcccccCCCC------cceeccccCcCCCCChhHHHhh
Q 036320 177 PMLNYLDIRFNEFEGPLPPELFN---KKLDAIFVNNNRFTSMIPQNFGSNNS------ASVLVIANNKFGGCLPPSVANL 247 (404)
Q Consensus 177 ~~L~~L~L~~n~l~~~~p~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~l~~~~p~~l~~l 247 (404)
++|++|++++|.+++..+..+.. ..|+.|++++|.+.+..+..+..+.+ |++|++++|.+++.++..+...
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 77888888777777666666654 34777777777777666665555544 8888888887766555444322
Q ss_pred -------------------------------------hcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCc
Q 036320 248 -------------------------------------ANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIP 290 (404)
Q Consensus 248 -------------------------------------~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 290 (404)
..+|+.|++++|.+.+..+..+..+++|+.|+|++|++++..+
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 1268888888888887778888888888888888888887777
Q ss_pred hhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCC
Q 036320 291 YSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 291 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~ 362 (404)
..+.++++|++|++++|++++..+..|..+++|+.|++++|.+.+..+........++.|++++|.|++++.
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 788888888888888888887778888888888888888888877766544333445558888887776653
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-29 Score=245.73 Aligned_cols=249 Identities=17% Similarity=0.163 Sum_probs=179.8
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
+++++.|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|++++|+++...+..|.++++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 45666677777766665555666667777777777766666666666666677777777666644334456666667777
Q ss_pred cccccCCCCCChhhhcCC-CceEEccCCccCCCCccccc-------------------------------------CCCC
Q 036320 184 IRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFG-------------------------------------SNNS 225 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~-------------------------------------~l~~ 225 (404)
+++|.+++..+..+.... |++|++++|.+++.....+. ..++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 766666644444444433 66666666666543222111 1246
Q ss_pred cceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeecc
Q 036320 226 ASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLA 305 (404)
Q Consensus 226 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 305 (404)
|+.|++++|.+++. ..+..++ +|++|++++|.+++..|..+..+++|++|+|++|+++ .++..+..+++|++|+++
T Consensus 228 L~~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 228 LTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECC
T ss_pred ccEEECCCCCCccc--HHHcCCC-CccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECC
Confidence 77777788877743 4677777 9999999999999988999999999999999999999 467777889999999999
Q ss_pred CCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCC
Q 036320 306 HNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 306 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~ 360 (404)
+|+++ .+|..+..+++|+.|++++|.|++... ..+. .++.|++++|.+...
T Consensus 304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~-~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL--STHH-TLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCC--CTTC-CCSEEECCSSCEEHH
T ss_pred CCcce-ecCccccccCcCCEEECCCCccceeCc--hhhc-cCCEEEcCCCCccch
Confidence 99998 567778889999999999999987642 2222 344599999998754
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=247.96 Aligned_cols=255 Identities=18% Similarity=0.127 Sum_probs=213.5
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.++++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 58999999999999977778999999999999999999888888999999999999999999766666999999999999
Q ss_pred ccccCCCCCCh--hhhcCC-CceEEccCC-ccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCC
Q 036320 185 RFNEFEGPLPP--ELFNKK-LDAIFVNNN-RFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTS 260 (404)
Q Consensus 185 ~~n~l~~~~p~--~~~~~~-L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~ 260 (404)
++|+++ .+|. .+.... |++|++++| .+.+..+..+..+++|++|++++|++.+..|..+..+. +|++|++++|.
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQ 209 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEEEEEEECSC
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc-cCCeecCCCCc
Confidence 999998 6665 454444 999999999 47776678899999999999999999988899999988 99999999999
Q ss_pred CcccCCcccCCCCCCCEEEcccCcCCCCCchhcc---CCCCCCEeeccCCcCcc----cCchhccCCCCCcEEeccCCcC
Q 036320 261 ISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIA---GLAHLELLNLAHNMMSG----IVPEGVCLLPNLSNFTFSYNFF 333 (404)
Q Consensus 261 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~l~~N~l 333 (404)
+.......+..+++|++|++++|++++..+..+. ....++.++++++.+.+ .+|+.+..+++|+.|++++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 9754444455689999999999999976554433 46678899999998876 3678889999999999999999
Q ss_pred cccCCCCCCcCCCceeeecCCCCCCCCC
Q 036320 334 CEEEGICNNLTSKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 334 ~~~~~~~~~l~~~~~~l~l~~N~l~~~~ 361 (404)
++.++........+++|++++|.+.+..
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 9766554333334566999999988654
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=266.98 Aligned_cols=259 Identities=22% Similarity=0.182 Sum_probs=197.0
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCC-cccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIV-PQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.++++.|||++|.+++..+..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|++++..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 467888999999998888888888999999999888666555 6778888999999999999888888888889999999
Q ss_pred EcccccCCCCCChh--hhcCC-CceEEccCCccCCCCc-ccccCCCCcceeccccCcCCCCChhHHHhh--hcccceeEc
Q 036320 183 DIRFNEFEGPLPPE--LFNKK-LDAIFVNNNRFTSMIP-QNFGSNNSASVLVIANNKFGGCLPPSVANL--ANSIEELLL 256 (404)
Q Consensus 183 ~L~~n~l~~~~p~~--~~~~~-L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~~L~~L~l 256 (404)
+|++|.+++.+|.. +.... |++|++++|.+++..+ ..|+.+++|++|++++|.+++..+..+..+ . +|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~-~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC-SSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC-ccceEEC
Confidence 99999888766654 44444 8899999888887654 568888888888888888887777766655 3 4444444
Q ss_pred cCCCCcccCCcccCC-----------------------------------------------------------------
Q 036320 257 INTSISGCLPPEVGY----------------------------------------------------------------- 271 (404)
Q Consensus 257 ~~n~l~~~~p~~~~~----------------------------------------------------------------- 271 (404)
++|.+.+..|..+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 444444333222211
Q ss_pred ---CCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCce
Q 036320 272 ---LYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGI 348 (404)
Q Consensus 272 ---l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~ 348 (404)
.++|+.|+|++|.+.+..+..+..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+........++
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 14677777777777766677778888888888888888888888888888889999998888887665443334456
Q ss_pred eeecCCCCCCCCCCC
Q 036320 349 AYDDRWNCFPEKPFQ 363 (404)
Q Consensus 349 ~l~l~~N~l~~~~~~ 363 (404)
.|++++|.|.+.+..
T Consensus 342 ~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQ 356 (844)
T ss_dssp EEECCSCCCCCCCSS
T ss_pred EEECCCCCCCccChh
Confidence 689999998887743
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=246.73 Aligned_cols=243 Identities=21% Similarity=0.189 Sum_probs=207.9
Q ss_pred EEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEccccc
Q 036320 109 GIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNE 188 (404)
Q Consensus 109 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 188 (404)
.++.++.+++. +|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 45555666665 565444 789999999999998888999999999999999999998888999999999999999999
Q ss_pred CCCCCCh-hhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChh-HHHhhhcccceeEccCCCCcccC
Q 036320 189 FEGPLPP-ELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPP-SVANLANSIEELLLINTSISGCL 265 (404)
Q Consensus 189 l~~~~p~-~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~~~~ 265 (404)
++ .++. .+.... |++|++++|.++...+..|..+++|++|++++|+..+.++. .+..+. +|++|++++|+++ .+
T Consensus 124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLR-EI 200 (440)
T ss_dssp CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCS-SC
T ss_pred CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCc-cc
Confidence 99 5554 455554 99999999999988888899999999999999544334444 567777 9999999999999 45
Q ss_pred CcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCC
Q 036320 266 PPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTS 345 (404)
Q Consensus 266 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 345 (404)
| .+..+++|++|+|++|++++..|..+.++++|+.|++++|+|++..+..|..+++|+.|+|++|+|++..+.......
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 5 478899999999999999988899999999999999999999999999999999999999999999988876544334
Q ss_pred CceeeecCCCCCC
Q 036320 346 KGIAYDDRWNCFP 358 (404)
Q Consensus 346 ~~~~l~l~~N~l~ 358 (404)
.++.|++++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 4566999999874
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=254.41 Aligned_cols=278 Identities=17% Similarity=0.107 Sum_probs=180.2
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCC-CCCcccCCCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVG-PFPNVVLSLPML 179 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L 179 (404)
+..+.++++|++++|.+++..+..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+.++++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 4456677777777777777666677777777777777777775544457777777777777777775 357777777777
Q ss_pred CEEEcccccCCCCCChhhhcC-----------------------------------------------------------
Q 036320 180 NYLDIRFNEFEGPLPPELFNK----------------------------------------------------------- 200 (404)
Q Consensus 180 ~~L~L~~n~l~~~~p~~~~~~----------------------------------------------------------- 200 (404)
++|++++|++++..+..+...
T Consensus 152 ~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~ 231 (570)
T 2z63_A 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231 (570)
T ss_dssp CEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEE
T ss_pred CEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceee
Confidence 777777776653322222111
Q ss_pred ---------------------------------------------------CCceEEccCCccCCCCcccc---------
Q 036320 201 ---------------------------------------------------KLDAIFVNNNRFTSMIPQNF--------- 220 (404)
Q Consensus 201 ---------------------------------------------------~L~~L~l~~n~l~~~~~~~~--------- 220 (404)
.|++|++++|.+.+ +|..+
T Consensus 232 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~ 310 (570)
T 2z63_A 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLE 310 (570)
T ss_dssp EEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEE
T ss_pred eccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEe
Confidence 12222222222221 11111
Q ss_pred ---------------------------------cCCCCcceeccccCcCCCCC--hhHHHhhhcccceeEccCCCCc---
Q 036320 221 ---------------------------------GSNNSASVLVIANNKFGGCL--PPSVANLANSIEELLLINTSIS--- 262 (404)
Q Consensus 221 ---------------------------------~~l~~L~~L~l~~n~l~~~~--p~~l~~l~~~L~~L~l~~n~l~--- 262 (404)
..+++|++|++++|++++.. +..+..+. +|++|++++|.+.
T Consensus 311 l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMS 389 (570)
T ss_dssp EESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEE
T ss_pred eccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccC-ccCEEECCCCcccccc
Confidence 23345555555555554322 45555555 5555555555544
Q ss_pred --------------------ccCC-cccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCc-ccCchhccCC
Q 036320 263 --------------------GCLP-PEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMS-GIVPEGVCLL 320 (404)
Q Consensus 263 --------------------~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l 320 (404)
+..+ ..+..+++|++|++++|.+++..|..+.++++|++|++++|+++ +.+|..+..+
T Consensus 390 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 3333 35666777777777777777777777888888888888888887 5678888889
Q ss_pred CCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCCC----CcccccccccCCCccc
Q 036320 321 PNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQR----SNKVCEPVLEHPVECF 380 (404)
Q Consensus 321 ~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~~----~~~~~~~~~~n~~~c~ 380 (404)
++|+.|++++|++++..|........+++|++++|+|++.+... +......+.+|++.|.
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99999999999999887754433344566999999999987542 3334456778999886
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.5e-29 Score=255.40 Aligned_cols=107 Identities=23% Similarity=0.338 Sum_probs=94.6
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
++++.|++++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 68999999999999988889999999999999999999988999999999999999999999 56655 8999999999
Q ss_pred ccccCCC-CCChhhhcCC-CceEEccCCccCC
Q 036320 185 RFNEFEG-PLPPELFNKK-LDAIFVNNNRFTS 214 (404)
Q Consensus 185 ~~n~l~~-~~p~~~~~~~-L~~L~l~~n~l~~ 214 (404)
++|++++ .+|..+.... |++|++++|.+++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 9999985 3456776655 8888888887653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-29 Score=259.38 Aligned_cols=250 Identities=17% Similarity=0.155 Sum_probs=206.1
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.+.+++.|++++|.+.+..+..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 35678999999999998888889999999999999999998888888999999999999999986666667899999999
Q ss_pred EcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCC-------------------------------------C
Q 036320 183 DIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSN-------------------------------------N 224 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l-------------------------------------~ 224 (404)
+|++|.+++..|..+.... |++|++++|.+++.....+..+ +
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 9999999876666676655 9999999988876533322221 3
Q ss_pred CcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeec
Q 036320 225 SASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNL 304 (404)
Q Consensus 225 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 304 (404)
+|+.|++++|.+++ +..+..++ +|++|++++|.+.+..|..+..+++|++|+|++|.+++ +|..+..+++|+.|+|
T Consensus 233 ~L~~L~L~~n~l~~--~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 233 ELTILKLQHNNLTD--TAWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp CCCEEECCSSCCCC--CGGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred CCCEEECCCCCCCC--ChhhccCC-CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 46667777777764 35677887 99999999999999999999999999999999999995 6777788999999999
Q ss_pred cCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCC
Q 036320 305 AHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 305 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~ 360 (404)
++|.++ .+|..+..+++|+.|++++|.|++.... .++ .+..|++++|.+...
T Consensus 309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~-~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLS--THH-TLKNLTLSHNDWDCN 360 (597)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCC--TTC-CCSEEECCSSCEEHH
T ss_pred CCCCCC-ccCcccccCCCCCEEECCCCCCCCcChh--hcC-CCCEEEeeCCCCCCh
Confidence 999998 6788888999999999999999887532 222 344599999998744
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.7e-29 Score=239.32 Aligned_cols=229 Identities=17% Similarity=0.159 Sum_probs=205.7
Q ss_pred CCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceE
Q 036320 127 LLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAI 205 (404)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L 205 (404)
....++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+.... |++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4588999999999999 78888999999999999999999 89999999999999999999999 8999888866 9999
Q ss_pred EccCCccCCCCcccccC---------CCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCC
Q 036320 206 FVNNNRFTSMIPQNFGS---------NNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLR 276 (404)
Q Consensus 206 ~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 276 (404)
++++|++.+.+|..+.. +++|++|++++|+++ .+|..+..+. +|++|++++|.+++ +|..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-TCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-CCCEEEccCCCCCc-CchhhccCCCCC
Confidence 99999999888887654 999999999999999 8999999998 99999999999995 677899999999
Q ss_pred EEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCC
Q 036320 277 VLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNC 356 (404)
Q Consensus 277 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~ 356 (404)
+|+|++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.....-..++.+++..|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988644433445558888777
Q ss_pred CCCCC
Q 036320 357 FPEKP 361 (404)
Q Consensus 357 l~~~~ 361 (404)
+..++
T Consensus 313 ~~~l~ 317 (328)
T 4fcg_A 313 QAQLD 317 (328)
T ss_dssp SCC--
T ss_pred HHHHh
Confidence 66554
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=9.5e-29 Score=256.63 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=167.5
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.++++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|+|++|++++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57888888888888877777888888888888888888888888888888888888888888655557888888888888
Q ss_pred ccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHh--hhcccceeEccCCCC
Q 036320 185 RFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVAN--LANSIEELLLINTSI 261 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~--l~~~L~~L~l~~n~l 261 (404)
++|++++..|..+.... |++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. .. +|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC-EESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc-cccEEECCCCcc
Confidence 88888855455666554 888888888888877777888888888888888888666665543 24 788888888877
Q ss_pred cccCCcccCCC---------------------------CCCCEEEcccCcCCCCCchhccCCCC--CCEeeccCCcCccc
Q 036320 262 SGCLPPEVGYL---------------------------YKLRVLDVSLNKLVGPIPYSIAGLAH--LELLNLAHNMMSGI 312 (404)
Q Consensus 262 ~~~~p~~~~~l---------------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~ 312 (404)
++..|..+..+ ++|+.|++++|++++..|..+.+++. |++|++++|++++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 76666544432 34455555555555555555554433 66666666666555
Q ss_pred CchhccCCCCCcEEeccCCcCcccCC
Q 036320 313 VPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 313 ~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
.|..+..+++|++|++++|.+++..|
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred CcccccCcccccEeeCCCCccCccCh
Confidence 55555555666666666665555443
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.6e-29 Score=244.84 Aligned_cols=243 Identities=19% Similarity=0.120 Sum_probs=206.9
Q ss_pred EEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccC
Q 036320 110 IDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEF 189 (404)
Q Consensus 110 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 189 (404)
++.++.+++. +|..+. +++++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus 59 v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 4455555655 554443 6899999999999998899999999999999999999988889999999999999999999
Q ss_pred CCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChh-HHHhhhcccceeEccCCCCcccCCc
Q 036320 190 EGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPP-SVANLANSIEELLLINTSISGCLPP 267 (404)
Q Consensus 190 ~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~~~~p~ 267 (404)
++..+..+.... |++|++++|.++...+..|..+++|++|++++|+..+.++. .+..+. +|++|++++|++++. |
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSC-C-
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCccccc-c-
Confidence 944444455444 99999999999987778899999999999999543334544 566777 999999999999954 4
Q ss_pred ccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCc
Q 036320 268 EVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKG 347 (404)
Q Consensus 268 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~ 347 (404)
.+..+++|++|+|++|++++..|..+.++++|+.|++++|++++..+..|..+++|+.|+|++|+|++.++........+
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 58889999999999999998889999999999999999999999999999999999999999999998887654434445
Q ss_pred eeeecCCCCCC
Q 036320 348 IAYDDRWNCFP 358 (404)
Q Consensus 348 ~~l~l~~N~l~ 358 (404)
+.|++++|.+.
T Consensus 293 ~~L~L~~Np~~ 303 (452)
T 3zyi_A 293 VELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEccCCCcC
Confidence 66999999864
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=8.4e-29 Score=250.55 Aligned_cols=256 Identities=17% Similarity=0.120 Sum_probs=152.1
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCC-CCcccCCCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGP-FPNVVLSLPML 179 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L 179 (404)
+..+.++++|++++|++++..|..|+++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+.++++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 34566777777777777776666777777777777777777766666677777777777777777652 45566667777
Q ss_pred CEEEcccccCCCCCCh-hhhcCC-CceEEccCCccCCCCcccccC------------------------CCCcceecccc
Q 036320 180 NYLDIRFNEFEGPLPP-ELFNKK-LDAIFVNNNRFTSMIPQNFGS------------------------NNSASVLVIAN 233 (404)
Q Consensus 180 ~~L~L~~n~l~~~~p~-~~~~~~-L~~L~l~~n~l~~~~~~~~~~------------------------l~~L~~L~l~~ 233 (404)
++|++++|.+.+.+|. .+.... |++|++++|.+++..|..+.. +++|++|++++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 7777777664334442 333333 555555555555544443332 23333333333
Q ss_pred CcCCC---------------------------------------------------------------------------
Q 036320 234 NKFGG--------------------------------------------------------------------------- 238 (404)
Q Consensus 234 n~l~~--------------------------------------------------------------------------- 238 (404)
|++.+
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 33322
Q ss_pred --------------------------------------CChhHHH-hhhcccceeEccCCCCcccCC---cccCCCCCCC
Q 036320 239 --------------------------------------CLPPSVA-NLANSIEELLLINTSISGCLP---PEVGYLYKLR 276 (404)
Q Consensus 239 --------------------------------------~~p~~l~-~l~~~L~~L~l~~n~l~~~~p---~~~~~l~~L~ 276 (404)
.+|..++ .++ +|++|++++|.+.+.+| ..+..+++|+
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT-TCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc-cccEEEccCCccccccccchhhhhccccCc
Confidence 2344443 344 67777777777766543 2355667777
Q ss_pred EEEcccCcCCCCCc--hhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCC
Q 036320 277 VLDVSLNKLVGPIP--YSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRW 354 (404)
Q Consensus 277 ~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~ 354 (404)
+|+|++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++...... ..+++||+++
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~---~~L~~L~Ls~ 440 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSN 440 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSC---TTCSEEECCS
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhc---CCceEEECCC
Confidence 77777777764321 34666777777777777776 566666666777777777777664432211 1233355555
Q ss_pred CCCCCCC
Q 036320 355 NCFPEKP 361 (404)
Q Consensus 355 N~l~~~~ 361 (404)
|+|++.+
T Consensus 441 N~l~~~~ 447 (549)
T 2z81_A 441 NNLDSFS 447 (549)
T ss_dssp SCCSCCC
T ss_pred CChhhhc
Confidence 5555444
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.2e-28 Score=228.89 Aligned_cols=226 Identities=18% Similarity=0.187 Sum_probs=157.6
Q ss_pred EEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccc
Q 036320 108 SGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFN 187 (404)
Q Consensus 108 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 187 (404)
+.+++++++++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666666655 34322 356777777777777665566777777777777777777666667777777777777777
Q ss_pred c-CCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccC
Q 036320 188 E-FEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCL 265 (404)
Q Consensus 188 ~-l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 265 (404)
. ++...+..+.... |++|++++|.+++..+..+..+++|++|++++|++++..+..+..++ +|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccC
Confidence 6 5533344554443 77777777777766666677777777777777777754445566666 7777777777777666
Q ss_pred CcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccC
Q 036320 266 PPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 266 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+....
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 666777777888888888777666777777777888888888777666666777777888888887776543
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=6.4e-31 Score=247.50 Aligned_cols=246 Identities=19% Similarity=0.150 Sum_probs=203.8
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCC-CCCcccCC-------CCCCCCEEeCcCcccCCCCCccc--
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFC-GIVPQTLS-------NLTLLYELDLSNNRFVGPFPNVV-- 173 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l-- 173 (404)
..+++.|++++|.+ .+|..+... |+.|++++|.++ ..+|..+. ++++|++|++++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45788889999999 577766544 899999999994 45666555 78999999999999999999876
Q ss_pred CCCCCCCEEEcccccCCCCCChhhhcC------CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCC--ChhHH-
Q 036320 174 LSLPMLNYLDIRFNEFEGPLPPELFNK------KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGC--LPPSV- 244 (404)
Q Consensus 174 ~~l~~L~~L~L~~n~l~~~~p~~~~~~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~l- 244 (404)
..+++|++|++++|++++. |..+... .|++|++++|++++..+..++.+++|++|++++|++.+. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8999999999999999965 7766653 499999999999998889999999999999999998755 33444
Q ss_pred -HhhhcccceeEccCCCCcc---cCCcccCCCCCCCEEEcccCcCCCCCc-hhccCCCCCCEeeccCCcCcccCchhccC
Q 036320 245 -ANLANSIEELLLINTSISG---CLPPEVGYLYKLRVLDVSLNKLVGPIP-YSIAGLAHLELLNLAHNMMSGIVPEGVCL 319 (404)
Q Consensus 245 -~~l~~~L~~L~l~~n~l~~---~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 319 (404)
..+. +|++|++++|.+++ .....+..+++|++|+|++|++++..| ..+..+++|++|++++|+|+ .+|..+.
T Consensus 197 ~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 197 PLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp TTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred hccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 6676 99999999999983 222444678999999999999998765 45667899999999999998 7787776
Q ss_pred CCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCC
Q 036320 320 LPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 320 l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~ 360 (404)
++|++||+++|+|++. |.+..++ .+++|++++|.|++.
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~~~~l~-~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PSPDELP-QVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CCTTTSC-EEEEEECTTCTTTCC
T ss_pred -CCceEEECCCCCCCCC-hhHhhCC-CCCEEeccCCCCCCC
Confidence 8999999999999988 4444443 356699999999864
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.3e-29 Score=267.00 Aligned_cols=184 Identities=20% Similarity=0.265 Sum_probs=145.3
Q ss_pred CCCCCcEEEEEcCCCCCCc-----------------cCccccc--CCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCc
Q 036320 101 DHKIQVVSGIDLNNADIAG-----------------FLPDELG--LLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLS 161 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 161 (404)
+..+.+++.|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|+++++|++|+|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4567889999999999988 3788877 99999999999999998999989999999999999
Q ss_pred Ccc-cCC-CCCcccCCC-------CCCCEEEcccccCCCCCCh--hhhcCC-CceEEccCCccCCCCcccccCCCCccee
Q 036320 162 NNR-FVG-PFPNVVLSL-------PMLNYLDIRFNEFEGPLPP--ELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVL 229 (404)
Q Consensus 162 ~n~-l~~-~~p~~l~~l-------~~L~~L~L~~n~l~~~~p~--~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L 229 (404)
+|+ +++ .+|..+.++ ++|++|+|++|+++ .+|. .+.... |++|++++|+++ .+| .++.+++|+.|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence 998 887 677655544 48888888888888 7887 676655 888888888888 566 78888888888
Q ss_pred ccccCcCCCCChhHHHhhhcc-cceeEccCCCCcccCCcccCCCCC--CCEEEcccCcCCCCCc
Q 036320 230 VIANNKFGGCLPPSVANLANS-IEELLLINTSISGCLPPEVGYLYK--LRVLDVSLNKLVGPIP 290 (404)
Q Consensus 230 ~l~~n~l~~~~p~~l~~l~~~-L~~L~l~~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p 290 (404)
++++|++. .+|..+..+. + |++|++++|.++ .+|..+..++. |+.|+|++|++++.+|
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFT-DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp ECCSSCCS-CCCTTSCEEC-TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred ECcCCccc-cchHHHhhcc-ccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 88888888 7887777777 6 888888888877 56666555433 6666666666654433
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.3e-29 Score=256.65 Aligned_cols=252 Identities=20% Similarity=0.133 Sum_probs=217.2
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCC--CCcccCCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGP--FPNVVLSLPM 178 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~ 178 (404)
.....+++.|++++|.+ +.+| .+ .+++|++|++++|...+.+ .+..+++|++|++++|.+++. .+..+..+++
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 34456777788888877 5566 34 7788888888888555433 477889999999999998865 4788899999
Q ss_pred CCEEEcccccCCCCCChhhhcCC-CceEEccCCccCCCCc-ccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEc
Q 036320 179 LNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIP-QNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLL 256 (404)
Q Consensus 179 L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l 256 (404)
|++|++++|.++ .+|..+.... |++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..++ +|++|++
T Consensus 378 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l 455 (606)
T 3vq2_A 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKM 455 (606)
T ss_dssp CCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEEC
T ss_pred ccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC-CCCEEEC
Confidence 999999999988 5676666655 9999999999998877 6889999999999999999988899899998 9999999
Q ss_pred cCCCCcc-cCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcc
Q 036320 257 INTSISG-CLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 257 ~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
++|.+.+ .+|..+..+++|++|+|++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|+|+.
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 9999997 478899999999999999999998889999999999999999999999999999999999999999999997
Q ss_pred cCCCCCCcCCCceeeecCCCCCCC
Q 036320 336 EEGICNNLTSKGIAYDDRWNCFPE 359 (404)
Q Consensus 336 ~~~~~~~l~~~~~~l~l~~N~l~~ 359 (404)
.++.+..++..++++++++|.+..
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCCCCC
T ss_pred cCHhHhhhcccCcEEEccCCCccc
Confidence 766655555556779999999975
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.1e-29 Score=230.79 Aligned_cols=234 Identities=20% Similarity=0.188 Sum_probs=203.9
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcc-cCCCCCcccCCCCCCCEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNR-FVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L 182 (404)
..++++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|. +++..+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999999999888889999999999999999998888999999999999999998 887778899999999999
Q ss_pred EcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCC
Q 036320 183 DIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSI 261 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 261 (404)
++++|.+++..+..+.... |++|++++|.+++..+..+..+++|++|++++|++++..+..+..+. +|++|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc-ccCEEECCCCcc
Confidence 9999999966676676655 99999999999988777899999999999999999965555677887 999999999999
Q ss_pred cccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCC
Q 036320 262 SGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGI 339 (404)
Q Consensus 262 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 339 (404)
++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+....+.. .....++.+..+.|.+....|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 9998999999999999999999999877788999999999999999998654321 1112355566777887776664
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=240.22 Aligned_cols=274 Identities=18% Similarity=0.183 Sum_probs=219.4
Q ss_pred CCCCcccceeeCCCCCCCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcc
Q 036320 85 PSVCNYRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNR 164 (404)
Q Consensus 85 ~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 164 (404)
...|.|.|+ | ++++++++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 27 ~~~C~~~~~-c---------------~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 27 SLSCDRNGI-C---------------KGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp CCEECTTSE-E---------------ECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCCCeE-e---------------eCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 456888776 5 456777776 565444 589999999999998777789999999999999999
Q ss_pred cCCCCCcccCCCCCCCEEEcccccCCCCCChh-hhcCC-CceEEccCCccCCCCc-ccccCCCCcceeccccC-cCCCCC
Q 036320 165 FVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPE-LFNKK-LDAIFVNNNRFTSMIP-QNFGSNNSASVLVIANN-KFGGCL 240 (404)
Q Consensus 165 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~-L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~ 240 (404)
+++..+..|.++++|++|++++|+++ .++.. +.... |++|++++|++++... ..+..+++|++|++++| .+.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 99888889999999999999999999 56665 55544 9999999999997544 47899999999999999 477555
Q ss_pred hhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCch-hccCCCCCCEeeccCCcCcccCchhcc-
Q 036320 241 PPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPY-SIAGLAHLELLNLAHNMMSGIVPEGVC- 318 (404)
Q Consensus 241 p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~- 318 (404)
+..+..+. +|++|++++|.+++..|..+..+++|++|++++|+++ .+|. .+..+++|++|++++|++++..+..+.
T Consensus 167 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 167 RKDFAGLT-FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp TTTTTTCC-EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred HHHccCCC-CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccc
Confidence 67788887 9999999999999999999999999999999999998 4454 455689999999999999976655443
Q ss_pred --CCCCCcEEeccCCcCccc----CCCCCCcCCCceeeecCCCCCCCCCCCC----CcccccccccCCCccc
Q 036320 319 --LLPNLSNFTFSYNFFCEE----EGICNNLTSKGIAYDDRWNCFPEKPFQR----SNKVCEPVLEHPVECF 380 (404)
Q Consensus 319 --~l~~L~~L~l~~N~l~~~----~~~~~~l~~~~~~l~l~~N~l~~~~~~~----~~~~~~~~~~n~~~c~ 380 (404)
....++.+++++|.+++. +|........++.||+++|+|+++|... +......+.+|++.|+
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 456789999999998873 2321111223445999999999998542 3334457778999885
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.8e-27 Score=244.19 Aligned_cols=280 Identities=18% Similarity=0.166 Sum_probs=211.7
Q ss_pred CCCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCC
Q 036320 100 YDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPML 179 (404)
Q Consensus 100 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 179 (404)
.+..+++++.|||++|+|++..+.+|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|+++++|
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 45577888999999999988777888899999999999999987777788889999999999999987777778888899
Q ss_pred CEEEcccccCCC-CCChhhhcCC-CceEEccCCccCCCCccccc------------------------------------
Q 036320 180 NYLDIRFNEFEG-PLPPELFNKK-LDAIFVNNNRFTSMIPQNFG------------------------------------ 221 (404)
Q Consensus 180 ~~L~L~~n~l~~-~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~------------------------------------ 221 (404)
++|++++|.+++ .+|..+.... |++|++++|++++..+..+.
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~ 230 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 230 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhh
Confidence 999999888874 3566665544 88888887766543221110
Q ss_pred --------------------------------------------------------------------------------
Q 036320 222 -------------------------------------------------------------------------------- 221 (404)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (404)
T Consensus 231 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 310 (635)
T 4g8a_A 231 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSS 310 (635)
T ss_dssp EESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSE
T ss_pred hhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccc
Confidence
Q ss_pred ----------------------------------------------------------CCCCcceeccccCcCCC--CCh
Q 036320 222 ----------------------------------------------------------SNNSASVLVIANNKFGG--CLP 241 (404)
Q Consensus 222 ----------------------------------------------------------~l~~L~~L~l~~n~l~~--~~p 241 (404)
.+++|+.|++++|.+.. ..+
T Consensus 311 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 390 (635)
T 4g8a_A 311 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 390 (635)
T ss_dssp EEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECC
T ss_pred ccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccc
Confidence 11223333333333310 011
Q ss_pred h------------------------------------------------HHHhhhcccceeEccCCCCcccCCcccCCCC
Q 036320 242 P------------------------------------------------SVANLANSIEELLLINTSISGCLPPEVGYLY 273 (404)
Q Consensus 242 ~------------------------------------------------~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~ 273 (404)
. .+..+. +++.++++.|.+.+..+..+..++
T Consensus 391 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~-~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 391 QSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp HHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCT
T ss_pred cchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc-ccccccccccccccccccccccch
Confidence 1 112222 677788889999988899999999
Q ss_pred CCCEEEcccCcCC-CCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeec
Q 036320 274 KLRVLDVSLNKLV-GPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDD 352 (404)
Q Consensus 274 ~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l 352 (404)
+|+.|+|++|.+. +..|..+..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+........+++||+
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 9999999999754 456788999999999999999999999999999999999999999999988864443344566999
Q ss_pred CCCCCCCCCCCCC-----cccccccccCCCccc
Q 036320 353 RWNCFPEKPFQRS-----NKVCEPVLEHPVECF 380 (404)
Q Consensus 353 ~~N~l~~~~~~~~-----~~~~~~~~~n~~~c~ 380 (404)
++|+|++.+.+.. ......+.+|||.|+
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999986532 233346778999996
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-27 Score=219.75 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=158.3
Q ss_pred CCCCcccceeeCCCCCCCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcc
Q 036320 85 PSVCNYRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNR 164 (404)
Q Consensus 85 ~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 164 (404)
.+.|.|.|+.|.. ...++.+++++++++. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.
T Consensus 2 ~~~C~~~~~~C~c------~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 2 EALCKKDGGVCSC------NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp CCCBGGGTCSBEE------ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred CccCCCCCCCCEe------CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence 4689999999975 2356789999999987 565443 679999999999997777789999999999999999
Q ss_pred cCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHH
Q 036320 165 FVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSV 244 (404)
Q Consensus 165 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 244 (404)
++...+..|.++++|++|++++|.+++ ++.. .+..+++|++|++++|++++..+..+
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~ 129 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQA-LPIG----------------------VFDQLVNLAELRLDRNQLKSLPPRVF 129 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCC-CCTT----------------------TTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCc-CCHh----------------------HcccccCCCEEECCCCccCeeCHHHh
Confidence 986666667888999999999888873 3332 23444455555555555554334444
Q ss_pred HhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCc
Q 036320 245 ANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLS 324 (404)
Q Consensus 245 ~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 324 (404)
..+. +|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 130 ~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 130 DSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CcCc-CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 4454 666666666666655555566777777777777777765555677777777788877777766566677777788
Q ss_pred EEeccCCcCcccC
Q 036320 325 NFTFSYNFFCEEE 337 (404)
Q Consensus 325 ~L~l~~N~l~~~~ 337 (404)
.|++++|.+...-
T Consensus 209 ~L~l~~N~~~c~c 221 (270)
T 2o6q_A 209 MLQLQENPWDCTC 221 (270)
T ss_dssp EEECCSSCBCCSS
T ss_pred EEEecCCCeeCCC
Confidence 8888888776543
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=7.7e-27 Score=222.54 Aligned_cols=244 Identities=21% Similarity=0.289 Sum_probs=190.3
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLN 180 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 180 (404)
...+.++++|++++|.+++. +.+.++++|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~ 158 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLN 158 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCC
T ss_pred hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCc
Confidence 45678999999999999874 3689999999999999999864 43 8899999999999997664444 488999999
Q ss_pred EEEcccccCCCCCChhhhcC-CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCC
Q 036320 181 YLDIRFNEFEGPLPPELFNK-KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINT 259 (404)
Q Consensus 181 ~L~L~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n 259 (404)
+|++++|.+. .++. +... .|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+. +|++|++++|
T Consensus 159 ~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~n 231 (347)
T 4fmz_A 159 YLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNN 231 (347)
T ss_dssp EEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSS
T ss_pred EEEecCCCcC-Cchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCC-cCCEEEccCC
Confidence 9999999988 4544 4443 49999999999886543 7788889999999888884433 66666 8888999988
Q ss_pred CCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCC
Q 036320 260 SISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGI 339 (404)
Q Consensus 260 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 339 (404)
.+++..+ +..+++|++|++++|.+++. +.+..+++|++|++++|++++. ..+..+++|+.|++++|.+++..+.
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 8885433 77888888888888888853 4577888888888888888754 3577888888888888888877654
Q ss_pred CCCcCCCceeeecCCCCCCCCCC
Q 036320 340 CNNLTSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 340 ~~~l~~~~~~l~l~~N~l~~~~~ 362 (404)
...-...+++|++++|.+++.+.
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG
T ss_pred HhhccccCCEEEccCCccccccC
Confidence 22222234448888888888754
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=7e-29 Score=233.54 Aligned_cols=223 Identities=19% Similarity=0.230 Sum_probs=190.6
Q ss_pred EEEEEcCCCCCC-ccCccccc-------CCCCCCEEECCCCcCCCCCcccC--CCCCCCCEEeCcCcccCCCCCcccCCC
Q 036320 107 VSGIDLNNADIA-GFLPDELG-------LLSDLALIHLNSNRFCGIVPQTL--SNLTLLYELDLSNNRFVGPFPNVVLSL 176 (404)
Q Consensus 107 l~~L~L~~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~l~~l 176 (404)
++.|++++|.+. ..++..+. ++++|++|++++|++++.+|..+ ..+++|++|++++|++++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 788999999994 56776665 79999999999999999999876 8999999999999999977 8878777
Q ss_pred -----CCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCCC--Ccccc--cCCCCcceeccccCcCCC--CChhHH
Q 036320 177 -----PMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSM--IPQNF--GSNNSASVLVIANNKFGG--CLPPSV 244 (404)
Q Consensus 177 -----~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~--~~p~~l 244 (404)
++|++|++++|++++..|..+.... |++|++++|++.+. .+..+ ..+++|++|++++|++++ .++..+
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 9999999999999976667777766 99999999998765 33344 889999999999999983 233333
Q ss_pred -HhhhcccceeEccCCCCcccCC-cccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCC
Q 036320 245 -ANLANSIEELLLINTSISGCLP-PEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPN 322 (404)
Q Consensus 245 -~~l~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 322 (404)
..+. +|++|++++|.+++..| ..+..+++|++|+|++|+|+ .+|..+. ++|++|++++|+|++. |. +..+++
T Consensus 224 ~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 224 AAARV-QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHTTC-CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HhcCC-CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 3445 99999999999998775 55677899999999999999 7787776 8999999999999966 66 889999
Q ss_pred CcEEeccCCcCccc
Q 036320 323 LSNFTFSYNFFCEE 336 (404)
Q Consensus 323 L~~L~l~~N~l~~~ 336 (404)
|++|++++|.+++.
T Consensus 298 L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 298 VGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEECTTCTTTCC
T ss_pred CCEEeccCCCCCCC
Confidence 99999999999874
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.1e-27 Score=239.10 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=64.6
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
+++.|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 44555555555555444445555555555555555554444445555555555555555554444445555555555555
Q ss_pred cccCCCCCChhhhcCC-CceEEccCCccCC-CCcccccCCCCcceeccccCcCCC
Q 036320 186 FNEFEGPLPPELFNKK-LDAIFVNNNRFTS-MIPQNFGSNNSASVLVIANNKFGG 238 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ 238 (404)
+|++++..+..+.... |++|++++|.+++ .+|..++++++|++|++++|++++
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 5555422111233322 5555555555444 234445555555555555554443
No 55
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.4e-26 Score=219.19 Aligned_cols=258 Identities=21% Similarity=0.266 Sum_probs=209.5
Q ss_pred CCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCE
Q 036320 102 HKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNY 181 (404)
Q Consensus 102 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 181 (404)
..++++++|++++|.+++.. . +..+++|++|++++|.+++ ++ .+.++++|++|++++|.+++. +. +..+++|++
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~ 136 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYS 136 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCE
T ss_pred hhcCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeE
Confidence 35788999999999998853 3 8999999999999999986 34 699999999999999999954 43 899999999
Q ss_pred EEcccccCCCCCChhhhcC-CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCC
Q 036320 182 LDIRFNEFEGPLPPELFNK-KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTS 260 (404)
Q Consensus 182 L~L~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~ 260 (404)
|++++|.....++. +... .|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+. +|+.|++++|.
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~-~L~~L~l~~n~ 210 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLT-SLHYFTAYVNQ 210 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCT-TCCEEECCSSC
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCC-ccceeecccCC
Confidence 99999976655555 5444 49999999999987644 8899999999999999984 444 77777 99999999999
Q ss_pred CcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCC
Q 036320 261 ISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGIC 340 (404)
Q Consensus 261 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 340 (404)
+.+..+ +..+++|++|++++|++++. +. +..+++|++|++++|++++. ..+..+++|++|++++|.+++. +.+
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~ 283 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVL 283 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGG
T ss_pred CCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhh
Confidence 986544 88899999999999999954 44 88999999999999999854 4688999999999999999986 333
Q ss_pred CCcCCCceeeecCCCCCCCCCCC----CCcccccccccCCCcc
Q 036320 341 NNLTSKGIAYDDRWNCFPEKPFQ----RSNKVCEPVLEHPVEC 379 (404)
Q Consensus 341 ~~l~~~~~~l~l~~N~l~~~~~~----~~~~~~~~~~~n~~~c 379 (404)
..++ .++.|++++|.+++.+.. .+......+.+|++..
T Consensus 284 ~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 284 NNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp GGCT-TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred cCCC-CCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 3332 345599999999877632 2333444556666544
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=4.7e-28 Score=228.37 Aligned_cols=216 Identities=23% Similarity=0.259 Sum_probs=125.1
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.++++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|++++. ...++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEEC
Confidence 456666666666666555566666666666666666654333 56666666666666666532 12356666666
Q ss_pred ccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHH-hhhcccceeEccCCCCcc
Q 036320 185 RFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVA-NLANSIEELLLINTSISG 263 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l~~ 263 (404)
++|++++..+.. ...|++|++++|++++..+..+..+++|++|++++|.+++..+..+. .+. +|++|++++|.+++
T Consensus 107 ~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCE
T ss_pred CCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-cCCEEECCCCcCcc
Confidence 666665322221 12366666666666665555566666666666666666654444443 344 66666666666664
Q ss_pred cCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCc
Q 036320 264 CLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFC 334 (404)
Q Consensus 264 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 334 (404)
. + ....+++|++|+|++|++++ +|..+..+++|++|++++|+|+ .+|..+..+++|+.|++++|.+.
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 184 V-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred c-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 3 2 22235666666666666663 3334556666666666666665 34555666666666666666665
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=9.7e-27 Score=214.87 Aligned_cols=208 Identities=19% Similarity=0.124 Sum_probs=124.8
Q ss_pred CCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEcc
Q 036320 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVN 208 (404)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~ 208 (404)
+|++|++++|.+++..+..|.++++|++|++++|++++..+..+.++++|++|++++|.+++..+..+.... |++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 455555555555544444455555555555555555544444455555555555555555433333333332 5555555
Q ss_pred CCccCCCCcccccCCCCcceeccccCcCCCC-ChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCC----EEEcccC
Q 036320 209 NNRFTSMIPQNFGSNNSASVLVIANNKFGGC-LPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLR----VLDVSLN 283 (404)
Q Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~Ls~N 283 (404)
+|++.+..+..+..+++|++|++++|++++. +|..+..+. +|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 5555544444566666677777777766642 466666666 677777777777665555555555555 7788888
Q ss_pred cCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCC
Q 036320 284 KLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGI 339 (404)
Q Consensus 284 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 339 (404)
++++..+. .....+|++|++++|++++..+..+..+++|+.|++++|.+++..+.
T Consensus 188 ~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 188 PMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 88744443 33445788888888888866666677788888888888888776553
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-27 Score=235.61 Aligned_cols=217 Identities=22% Similarity=0.232 Sum_probs=172.0
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
.++++.|+|++|.+++..|..|..+++|++|+|++|.+++..| |..+++|++|+|++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3478888898888888777888888889999998888886555 888888889999888887532 237888888
Q ss_pred cccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHH-hhhcccceeEccCCCCc
Q 036320 184 IRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVA-NLANSIEELLLINTSIS 262 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l~ 262 (404)
+++|.+++..+.. ...|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .++ +|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCC
T ss_pred CcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCccc
Confidence 8888888543332 23488888888888888787888888888888888888877777776 566 8888888888888
Q ss_pred ccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCc
Q 036320 263 GCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFC 334 (404)
Q Consensus 263 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 334 (404)
+..+ +..+++|++|+|++|.+++. |..+..+++|+.|++++|.|++ +|..+..+++|+.|++++|.+.
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 6532 34588888888888888854 4457788888888888888884 6777888888888888888887
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.2e-27 Score=223.74 Aligned_cols=240 Identities=18% Similarity=0.111 Sum_probs=202.6
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++..+++.+.+...+...+..+++|++|++++|.+++..|..|.++++|++|+|++|++++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 357778888888877666667788899999999999999888899999999999999999997654 999999999999
Q ss_pred ccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCccc
Q 036320 185 RFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGC 264 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 264 (404)
++|+++ .++.. ..|++|++++|++++..+. .+++|++|++++|++++..+..+..+. +|++|++++|.+++.
T Consensus 88 s~n~l~-~l~~~---~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQ-ELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEE-EEEEC---TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEE
T ss_pred cCCccc-cccCC---CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcc
Confidence 999998 44421 5599999999999986554 367899999999999976676788887 999999999999987
Q ss_pred CCccc-CCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCc
Q 036320 265 LPPEV-GYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNL 343 (404)
Q Consensus 265 ~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l 343 (404)
.+..+ ..+++|++|+|++|++++. +. ...+++|++|++++|+|++. |..+..+++|+.|++++|.|++.++.+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcC
Confidence 77766 4789999999999999954 43 44589999999999999965 445889999999999999999765544443
Q ss_pred CCCceeeecCCCCCC
Q 036320 344 TSKGIAYDDRWNCFP 358 (404)
Q Consensus 344 ~~~~~~l~l~~N~l~ 358 (404)
..++.|++++|.+.
T Consensus 237 -~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 -QNLEHFDLRGNGFH 250 (317)
T ss_dssp -TTCCEEECTTCCCB
T ss_pred -CCCCEEEccCCCcc
Confidence 34556999999998
No 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=8.5e-26 Score=224.18 Aligned_cols=82 Identities=32% Similarity=0.446 Sum_probs=50.0
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.+.++++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 45667777777777766433 6666777777777776665433 6666666666666666664322 5555555555
Q ss_pred EcccccCC
Q 036320 183 DIRFNEFE 190 (404)
Q Consensus 183 ~L~~n~l~ 190 (404)
++++|.++
T Consensus 140 ~l~~n~l~ 147 (466)
T 1o6v_A 140 ELSSNTIS 147 (466)
T ss_dssp EEEEEEEC
T ss_pred ECCCCccC
Confidence 55555544
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=8.2e-26 Score=224.31 Aligned_cols=242 Identities=28% Similarity=0.372 Sum_probs=188.1
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCC----------
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP---------- 170 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p---------- 170 (404)
...+.++++|++++|.+.+..+ ++++++|++|++++|.+++..+ +.++++|++|++++|.+++...
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEe
Confidence 4567899999999999998654 9999999999999999996533 8999999999999999885311
Q ss_pred ---------cccCCCCCCCEEEcccccCCCCCChhhhc-CCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCC
Q 036320 171 ---------NVVLSLPMLNYLDIRFNEFEGPLPPELFN-KKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCL 240 (404)
Q Consensus 171 ---------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 240 (404)
..+.++++|++|++++|.++ .++. +.. ..|++|++++|.+.+..+ ++.+++|++|++++|++.+ +
T Consensus 162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~ 236 (466)
T 1o6v_A 162 SFGNQVTDLKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I 236 (466)
T ss_dssp EEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C
T ss_pred ecCCcccCchhhccCCCCCEEECcCCcCC-CChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c
Confidence 12556677788888888876 4443 333 348888888888877655 6777888888888888874 3
Q ss_pred hhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCC
Q 036320 241 PPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLL 320 (404)
Q Consensus 241 p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 320 (404)
..+..++ +|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+
T Consensus 237 -~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 308 (466)
T 1o6v_A 237 -GTLASLT-NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308 (466)
T ss_dssp -GGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred -hhhhcCC-CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCC
Confidence 3466676 88889999888886544 7888899999999999885433 7888999999999999986554 7788
Q ss_pred CCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCC
Q 036320 321 PNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 321 ~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~ 361 (404)
++|+.|++++|.+++..| ...+ ..++.|++++|.+++.+
T Consensus 309 ~~L~~L~L~~n~l~~~~~-~~~l-~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP-VSSL-TKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp TTCSEEECCSSCCSCCGG-GGGC-TTCCEEECCSSCCCCCG
T ss_pred CCCCEEECcCCcCCCchh-hccC-ccCCEeECCCCccCCch
Confidence 899999999999988766 2222 23455999999998874
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.9e-25 Score=220.88 Aligned_cols=229 Identities=21% Similarity=0.209 Sum_probs=164.2
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
+++++.|++++|.+++. | .++.+++|++|++++|++++. | ++.+++|++|++++|++++. + +.++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 46778888888888774 4 577888888888888888864 3 77888888888888888864 3 77888888888
Q ss_pred cccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 184 IRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
+++|++++ ++ +.... |++|++++|++++. .++.+++|++|++++|+..+.++ +..+. +|++|++++|+++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~~l~-~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQT-QLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--CTTCT-TCCEEECCSSCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--cccCC-cCCEEECCCCccc
Confidence 88888874 44 44433 88888888888774 26777888888888885544552 55666 7888888888887
Q ss_pred ccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCC-CC
Q 036320 263 GCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGI-CN 341 (404)
Q Consensus 263 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~-~~ 341 (404)
+ +| +..+++|+.|++++|++++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++.++. +.
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 5 34 67778888888888888754 36777888888888888876 45 67778888888888888776542 22
Q ss_pred CcCCCceeeecCCCCCCCCCC
Q 036320 342 NLTSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 342 ~l~~~~~~l~l~~N~l~~~~~ 362 (404)
.+. .+++++|+++.+.+
T Consensus 255 ~L~----~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 255 KLT----TLHCIQTDLLEIDL 271 (457)
T ss_dssp TCC----EEECTTCCCSCCCC
T ss_pred CCC----EEeccCCCCCEEEC
Confidence 222 24555555544443
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6e-27 Score=233.56 Aligned_cols=218 Identities=19% Similarity=0.139 Sum_probs=188.0
Q ss_pred CCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEE
Q 036320 127 LLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIF 206 (404)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~ 206 (404)
.+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.++ .+|.. ..|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~---~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG---PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEEC---TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCC---CCcCEEE
Confidence 34489999999999999888999999999999999999997665 999999999999999998 44422 5599999
Q ss_pred ccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccC-CCCCCCEEEcccCcC
Q 036320 207 VNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVG-YLYKLRVLDVSLNKL 285 (404)
Q Consensus 207 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l 285 (404)
+++|.+++..+. .+++|+.|++++|.+++..|..+..++ +|++|++++|.+++..|..+. .+++|++|+|++|.|
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 999999986654 458899999999999988888888888 999999999999998888876 799999999999999
Q ss_pred CCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCC
Q 036320 286 VGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFP 358 (404)
Q Consensus 286 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~ 358 (404)
++. +. +..+++|+.|+|++|+|++..| .+..+++|+.|++++|.|++.++.+..++ .+..+++++|.+.
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~-~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQ-NLEHFDLRGNGFH 250 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCT-TCCEEECTTCCBC
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCC-CCCEEEcCCCCCc
Confidence 965 33 4469999999999999997555 48899999999999999998665544333 3455999999998
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.1e-25 Score=207.91 Aligned_cols=207 Identities=17% Similarity=0.114 Sum_probs=182.8
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.++++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46999999999999988878999999999999999999877788999999999999999999888889999999999999
Q ss_pred ccccCCCCCChhhhcCC-CceEEccCCccCCC-CcccccCCCCcceeccccCcCCCCChhHHHhhhcccc----eeEccC
Q 036320 185 RFNEFEGPLPPELFNKK-LDAIFVNNNRFTSM-IPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIE----ELLLIN 258 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~----~L~l~~ 258 (404)
++|.+++..+..+.... |++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+. +|+ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-hccccceeeecCC
Confidence 99999955454565555 99999999999874 588999999999999999999977777787777 777 899999
Q ss_pred CCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccC
Q 036320 259 TSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIV 313 (404)
Q Consensus 259 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 313 (404)
|.+++..+..+. ..+|++|+|++|++++..+..+..+++|+.|++++|.+++..
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 999976665554 458999999999999776677889999999999999998543
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.6e-25 Score=206.94 Aligned_cols=200 Identities=22% Similarity=0.242 Sum_probs=123.1
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++++++++++++. +|..+. +.+++|++++|.+++..+..|.++++|++|+|++|.+++..+ ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 445555555555544 232222 445555555555554444455555555555555555553211 144455555555
Q ss_pred ccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCccc
Q 036320 185 RFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGC 264 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 264 (404)
++|+++ . +|..+..+++|++|++++|++++..+..+..+. +|++|++++|++++.
T Consensus 85 s~N~l~-~-----------------------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 85 SHNQLQ-S-----------------------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELKTL 139 (290)
T ss_dssp CSSCCS-S-----------------------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCCCCC
T ss_pred CCCcCC-c-----------------------CchhhccCCCCCEEECCCCcCcccCHHHHcCCC-CCCEEECCCCCCCcc
Confidence 555444 3 344455666666666666666644445566665 677777777777766
Q ss_pred CCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcc
Q 036320 265 LPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 265 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
.+..+..+++|+.|+|++|+|++..+..+..+++|+.|++++|+|+ .+|..+...++|+.|++++|.+..
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 6666777788888888888887555555677788888888888887 566677777788888888887754
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=8.6e-25 Score=201.24 Aligned_cols=204 Identities=18% Similarity=0.170 Sum_probs=162.3
Q ss_pred CCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccC
Q 036320 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNN 209 (404)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~ 209 (404)
..++++++++.++. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.++ .++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~--------------- 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP--------------- 77 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCC---------------
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeC---------------
Confidence 46677888877773 554443 56777888887777666667777777777777777766 332
Q ss_pred CccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCC
Q 036320 210 NRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPI 289 (404)
Q Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 289 (404)
+..|..+++|++|++++|++++..+..+..+. +|++|++++|.+++..+..+..+++|++|+|++|++++..
T Consensus 78 -------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 78 -------AGIFKELKNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp -------TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -------hhhhcCCCCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 33456778888999999988855555667777 9999999999999888888999999999999999999776
Q ss_pred chhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCC
Q 036320 290 PYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 290 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~ 360 (404)
+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+........++.|++++|.+...
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 67789999999999999999987778899999999999999999988775443333455699999988643
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=8e-25 Score=216.39 Aligned_cols=240 Identities=17% Similarity=0.178 Sum_probs=146.7
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLN 180 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 180 (404)
...+++++.|++++|.+++. + ++.+++|++|++++|.+++. + ++++++|++|++++|++++ ++ +..+++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~ 130 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLT 130 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCC
T ss_pred hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCC
Confidence 34567788888888888774 3 77788888888888888764 3 7778888888888888875 33 77788888
Q ss_pred EEEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCC
Q 036320 181 YLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINT 259 (404)
Q Consensus 181 ~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n 259 (404)
+|++++|++++ ++ +.... |++|++++|...+.+ .+..+++|++|++++|++++ +| +..++ +|++|++++|
T Consensus 131 ~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~-~L~~L~l~~N 201 (457)
T 3bz5_A 131 YLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNK-LLNRLNCDTN 201 (457)
T ss_dssp EEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCT-TCCEEECCSS
T ss_pred EEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCC-CCCEEECcCC
Confidence 88888888774 33 33332 666666666444333 25555666666666666653 33 44444 5666666666
Q ss_pred CCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhc----------------------
Q 036320 260 SISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGV---------------------- 317 (404)
Q Consensus 260 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l---------------------- 317 (404)
.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++..+..+
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred cCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence 55543 24555555556666555554 33 4555555555555555554433222
Q ss_pred -------cCCCCCcEEeccCCcCcccCCC-CCCc-------CCCceeeecCCCCCCCCCCCC
Q 036320 318 -------CLLPNLSNFTFSYNFFCEEEGI-CNNL-------TSKGIAYDDRWNCFPEKPFQR 364 (404)
Q Consensus 318 -------~~l~~L~~L~l~~N~l~~~~~~-~~~l-------~~~~~~l~l~~N~l~~~~~~~ 364 (404)
..+++|+.|++++|.+.+.+|. ...+ ...+++|++++|+|+++++..
T Consensus 276 ~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~ 337 (457)
T 3bz5_A 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSH 337 (457)
T ss_dssp TCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred cCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccccccc
Confidence 3345666666666655444331 0001 123456888888888876543
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.3e-25 Score=207.00 Aligned_cols=217 Identities=17% Similarity=0.139 Sum_probs=138.3
Q ss_pred EEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccC
Q 036320 110 IDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEF 189 (404)
Q Consensus 110 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 189 (404)
+++.++.+.+.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 24 l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 24 ANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCC
T ss_pred HHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCcc
Confidence 344444444432 24456666777777666663 22 356666777777777766642 3566666777777777766
Q ss_pred CCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcc
Q 036320 190 EGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPE 268 (404)
Q Consensus 190 ~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~ 268 (404)
++..+..+.... |++|++++|++++..+..+..+++|++|++++|++++..+..+..+. +|++|++++|++++..+..
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECCCCCcCccCHHH
Confidence 643333333333 66666666666655555566677777777777777754444455565 7777777777777666666
Q ss_pred cCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCC
Q 036320 269 VGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGIC 340 (404)
Q Consensus 269 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 340 (404)
+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+. +++|+.++++.|.++|.+|..
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 67777777777777777766666667777777777777776543 446777777777777776643
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.9e-26 Score=226.52 Aligned_cols=231 Identities=20% Similarity=0.219 Sum_probs=152.8
Q ss_pred CCCCcEEEEEcCCCCCCccCcccccCCCCC-------------CEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCC
Q 036320 102 HKIQVVSGIDLNNADIAGFLPDELGLLSDL-------------ALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGP 168 (404)
Q Consensus 102 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 168 (404)
..+.++++|++++|.+.|.+|..++++++| ++|++++|.+++ +|.. .++|++|++++|.+++
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~- 105 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE- 105 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-
Confidence 344555556666666655556555555543 666666666654 2321 2567777777777775
Q ss_pred CCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhh
Q 036320 169 FPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLA 248 (404)
Q Consensus 169 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 248 (404)
+|.. +++|++|++++|+++ .++... ..|++|++++|++++ +| .++.+++|++|++++|++++ +|..+ .
T Consensus 106 lp~~---~~~L~~L~l~~n~l~-~l~~~~--~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~ 173 (454)
T 1jl5_A 106 LPEL---PQSLKSLLVDNNNLK-ALSDLP--PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---P 173 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-CCCSCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---T
T ss_pred cccc---cCCCcEEECCCCccC-cccCCC--CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---c
Confidence 4532 367777888777777 344321 358888888888886 55 58888899999999988884 55432 3
Q ss_pred cccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEec
Q 036320 249 NSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTF 328 (404)
Q Consensus 249 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 328 (404)
+|++|++++|.+++ +| .+.++++|++|++++|++++ +|.. .++|++|++++|+++ .+|. +..+++|++|++
T Consensus 174 -~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l 244 (454)
T 1jl5_A 174 -SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYA 244 (454)
T ss_dssp -TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred -cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEEC
Confidence 78888888888886 55 57888888888888888884 4432 247788888888877 5663 777788888888
Q ss_pred cCCcCcccCCCCCCcCCCceeeecCCCCCCCCCC
Q 036320 329 SYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 329 ~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~ 362 (404)
++|++++..... ..++.|++++|+++++|.
T Consensus 245 ~~N~l~~l~~~~----~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 245 DNNLLKTLPDLP----PSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp CSSCCSSCCSCC----TTCCEEECCSSCCSCCCC
T ss_pred CCCcCCcccccc----cccCEEECCCCcccccCc
Confidence 888877644322 223336666666666553
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=6.3e-24 Score=209.78 Aligned_cols=226 Identities=25% Similarity=0.332 Sum_probs=142.7
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.++++|++++|.+++ +| .|+++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .+.++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 467777777777776 55 47777778888888777775 45432 477788888887775 45 5778888888888
Q ss_pred ccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCccc
Q 036320 185 RFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGC 264 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 264 (404)
++|++++ +|... ..|++|++++|.++ .+| .+..+++|++|++++|++++ +|.. .. +|++|++++|.+++
T Consensus 203 ~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~-~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 203 DNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PP-SLEALNVRDNYLTD- 271 (454)
T ss_dssp CSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CT-TCCEEECCSSCCSC-
T ss_pred CCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---cc-ccCEEECCCCcccc-
Confidence 8888873 55432 35888888888887 455 37788888888888888874 5532 23 78888888888775
Q ss_pred CCcccCCCCCCCEEEcccCcCCC--CCchhcc-------------CC-CCCCEeeccCCcCcccCchhccCCCCCcEEec
Q 036320 265 LPPEVGYLYKLRVLDVSLNKLVG--PIPYSIA-------------GL-AHLELLNLAHNMMSGIVPEGVCLLPNLSNFTF 328 (404)
Q Consensus 265 ~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~-------------~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 328 (404)
+|.. +++|++|++++|++++ .+|..+. .+ ++|++|++++|++++ +|.. +++|+.|++
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIA 344 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEEC
Confidence 4433 3677777777777775 2221111 11 245555555555553 3322 345555555
Q ss_pred cCCcCcccCCCCCCcCCCceeeecCCCCCCCC
Q 036320 329 SYNFFCEEEGICNNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 329 ~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~ 360 (404)
++|++++.+. ....+++|++++|+++++
T Consensus 345 ~~N~l~~lp~----~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 345 SFNHLAEVPE----LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSSC
T ss_pred CCCccccccc----hhhhccEEECCCCCCCcC
Confidence 5555554332 122233466666666553
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.7e-25 Score=201.81 Aligned_cols=208 Identities=18% Similarity=0.171 Sum_probs=183.1
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.+.+++.|++++|.+... ..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++..+..+.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 356899999999998863 3488999999999999999963 478999999999999999998888889999999999
Q ss_pred EcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCC
Q 036320 183 DIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSI 261 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 261 (404)
++++|++++..+..+.... |++|++++|++++..+..+..+++|++|++++|++++..+..+..+. +|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-QLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-cCCEEECCCCcC
Confidence 9999999955555555554 99999999999988888889999999999999999976666677887 999999999999
Q ss_pred cccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCC
Q 036320 262 SGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPN 322 (404)
Q Consensus 262 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 322 (404)
++..+..+..+++|++|++++|.+.+. +++|+.|++..|+++|.+|.+++.+..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 988888899999999999999998854 457899999999999999998887754
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=3e-24 Score=199.71 Aligned_cols=179 Identities=22% Similarity=0.248 Sum_probs=139.7
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..+ .+.+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 689999999999999888899999999999999999996433 378999999999999998 67888899999999999
Q ss_pred ccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCccc
Q 036320 185 RFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGC 264 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 264 (404)
++|++++ ++ +..|..+++|++|++++|++++..+..+..+. +|+.|++++|++++.
T Consensus 108 ~~N~l~~-l~----------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 108 SFNRLTS-LP----------------------LGALRGLGELQELYLKGNELKTLPPGLLTPTP-KLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCCC-CC----------------------SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCSCC
T ss_pred CCCcCcc-cC----------------------HHHHcCCCCCCEEECCCCCCCccChhhccccc-CCCEEECCCCcCCcc
Confidence 9998884 33 23345555666666666666543333344555 677777777777755
Q ss_pred CCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcc
Q 036320 265 LPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSG 311 (404)
Q Consensus 265 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 311 (404)
.+..+..+++|++|+|++|+++ .+|..+....+|+.|++++|.+..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 5556677888888888888888 677777777888888888888753
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=7.4e-26 Score=217.29 Aligned_cols=250 Identities=18% Similarity=0.157 Sum_probs=160.5
Q ss_pred EEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCc----ccCCCCC-CCCEEeCcCcccCCCCCcccCCC-----CCC
Q 036320 110 IDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVP----QTLSNLT-LLYELDLSNNRFVGPFPNVVLSL-----PML 179 (404)
Q Consensus 110 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~L 179 (404)
++++.|++++.+|..+...++|++|++++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677777777777766666668888888887776655 5666777 78888888887776666655554 778
Q ss_pred CEEEcccccCCCCCChhhhc------CCCceEEccCCccCCCCccccc----C-CCCcceeccccCcCCCCChhHH----
Q 036320 180 NYLDIRFNEFEGPLPPELFN------KKLDAIFVNNNRFTSMIPQNFG----S-NNSASVLVIANNKFGGCLPPSV---- 244 (404)
Q Consensus 180 ~~L~L~~n~l~~~~p~~~~~------~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~L~l~~n~l~~~~p~~l---- 244 (404)
++|+|++|.+++..+..+.. ..|++|++++|.+++..+..+. . .++|++|++++|.+++.....+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888777555554333 2478888888877766554432 2 2577888888877775443333
Q ss_pred HhhhcccceeEccCCCCcccCCccc----CCC-CCCCEEEcccCcCCCC----CchhccC-CCCCCEeeccCCcCcccCc
Q 036320 245 ANLANSIEELLLINTSISGCLPPEV----GYL-YKLRVLDVSLNKLVGP----IPYSIAG-LAHLELLNLAHNMMSGIVP 314 (404)
Q Consensus 245 ~~l~~~L~~L~l~~n~l~~~~p~~~----~~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~L~~N~l~~~~p 314 (404)
.....+|++|++++|.+++..+..+ ... ++|++|+|++|.|++. ++..+.. .++|++|++++|+|++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3332367788888887776554333 334 5788888888877753 3344444 3478888888887776544
Q ss_pred ----hhccCCCCCcEEeccCCcCcccCC--------CCCCcCCCceeeecCCCCCCCC
Q 036320 315 ----EGVCLLPNLSNFTFSYNFFCEEEG--------ICNNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 315 ----~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~l~~~~~~l~l~~N~l~~~ 360 (404)
..+..+++|+.|++++|.+.+..+ .+.. ...++++|+++|.|.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCcCCCc
Confidence 334566778888888877443322 1222 22244477888877654
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=5.4e-25 Score=206.73 Aligned_cols=223 Identities=19% Similarity=0.156 Sum_probs=128.2
Q ss_pred cEEEEEcCCCCCCccC-cc--cccCCCCCCEEECCCCcCCCCCcccC--CCCCCCCEEeCcCcccCCCCC----cccCCC
Q 036320 106 VVSGIDLNNADIAGFL-PD--ELGLLSDLALIHLNSNRFCGIVPQTL--SNLTLLYELDLSNNRFVGPFP----NVVLSL 176 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~-p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l 176 (404)
.++.+++.++.+.... .. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3555666666554310 00 11223457777777777766666665 666677777777777665444 233456
Q ss_pred CCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCCC--C--cccccCCCCcceeccccCcCCCCChhH----HHhh
Q 036320 177 PMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSM--I--PQNFGSNNSASVLVIANNKFGGCLPPS----VANL 247 (404)
Q Consensus 177 ~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l 247 (404)
++|++|++++|.+++..+..+.... |++|++++|++.+. + +..+..+++|++|++++|+++ .++.. +..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 6677777777777644444554444 67777777665432 1 122345666777777777665 23321 2344
Q ss_pred hcccceeEccCCCCcccCCcccCCC---CCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCc
Q 036320 248 ANSIEELLLINTSISGCLPPEVGYL---YKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLS 324 (404)
Q Consensus 248 ~~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 324 (404)
. +|++|++++|.+.+..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|++++|+|++. |. +..+++|+
T Consensus 224 ~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 224 V-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp C-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred C-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 4 66666666666666555555554 46666666666666 4555443 5666666666666643 22 45556666
Q ss_pred EEeccCCcCcc
Q 036320 325 NFTFSYNFFCE 335 (404)
Q Consensus 325 ~L~l~~N~l~~ 335 (404)
.|++++|+|++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 66666666654
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=3.8e-24 Score=194.78 Aligned_cols=192 Identities=20% Similarity=0.230 Sum_probs=145.6
Q ss_pred CCCcccceeeCCCCCCCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCccc
Q 036320 86 SVCNYRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRF 165 (404)
Q Consensus 86 ~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 165 (404)
++|.|.|..|.. ..+++++++++++. +|..+. +.++.|++++|.+++..+..|.++++|++|+|++|.+
T Consensus 3 ~Cp~~~gC~C~~--------~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 3 TCETVTGCTCNE--------GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp -CHHHHSSEEEG--------GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCceEcCC--------CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 356899999952 56679999999986 555454 6899999999999988888899999999999999999
Q ss_pred CCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHH
Q 036320 166 VGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVA 245 (404)
Q Consensus 166 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 245 (404)
++..+..|.++++|++|++++|++++ ++. ..|..+++|++|++++|++++..+..+.
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~----------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 128 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLAS-LPL----------------------GVFDHLTQLDKLYLGGNQLKSLPSGVFD 128 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCC-CCT----------------------TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCHhHhccCCcCCEEECCCCcccc-cCh----------------------hHhcccCCCCEEEcCCCcCCCcChhHhc
Confidence 98888888999999999999998873 332 2344455566666666666533333344
Q ss_pred hhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCccc
Q 036320 246 NLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGI 312 (404)
Q Consensus 246 ~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 312 (404)
.+. +|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 129 ~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 129 RLT-KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCC-cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 555 677777777777766566777788888888888888866666777888888888888888755
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=5.3e-26 Score=215.69 Aligned_cols=262 Identities=15% Similarity=0.105 Sum_probs=205.4
Q ss_pred CcccceeeCCCCCCCCCCcEEEEEcCCCCCCccCcccccCC--CCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCccc
Q 036320 88 CNYRGIYCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLL--SDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRF 165 (404)
Q Consensus 88 C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 165 (404)
.+|.++.+++ ..++.+|++++.+. +..+..+ ++++.|++++|.+++..+. +.++++|++|++++|.+
T Consensus 37 ~~W~~~~~~~-------~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 37 KRWYRLASDE-------SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp HHHHHHHTCS-------TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred HHHHHHhcCc-------hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence 3698888753 35778999998876 4556666 8999999999999987665 56789999999999998
Q ss_pred CCC-CCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCC-ccCCC-CcccccCCCCcceeccccC-cCCCC-
Q 036320 166 VGP-FPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNN-RFTSM-IPQNFGSNNSASVLVIANN-KFGGC- 239 (404)
Q Consensus 166 ~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~- 239 (404)
++. ++..+..+++|++|++++|.+++..+..+.... |++|++++| .+++. ++..+..+++|++|++++| .+++.
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 865 778889999999999999998877777776655 999999999 67753 6666888999999999999 88854
Q ss_pred ChhHHHhhhcccceeEccCC--CCc-ccCCcccCCCCCCCEEEcccCc-CCCCCchhccCCCCCCEeeccCCc-CcccCc
Q 036320 240 LPPSVANLANSIEELLLINT--SIS-GCLPPEVGYLYKLRVLDVSLNK-LVGPIPYSIAGLAHLELLNLAHNM-MSGIVP 314 (404)
Q Consensus 240 ~p~~l~~l~~~L~~L~l~~n--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p 314 (404)
++..+..++.+|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.....
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 56666666547999999999 555 4567777889999999999999 776777888999999999999995 433333
Q ss_pred hhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCC
Q 036320 315 EGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQ 363 (404)
Q Consensus 315 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~ 363 (404)
..+..+++|+.|++++| ++... +..+...+..|++++|.|++....
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~~~~--~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VPDGT--LQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SCTTC--HHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHhcCCCCCEEeccCc-cCHHH--HHHHHhhCcceEEecccCccccCC
Confidence 36788999999999999 44321 111111223388999999987543
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=6.7e-24 Score=199.09 Aligned_cols=193 Identities=19% Similarity=0.285 Sum_probs=114.7
Q ss_pred CCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcC-CCceEE
Q 036320 128 LSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNK-KLDAIF 206 (404)
Q Consensus 128 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~ 206 (404)
+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|+++ .++ .+... .|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEE
Confidence 3444444444444442 22 24444444444444444443221 444444444444444444 222 12222 255555
Q ss_pred ccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCC
Q 036320 207 VNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLV 286 (404)
Q Consensus 207 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 286 (404)
+++|++++. + .+..+++|++|++++|++++ ++. +..+. +|++|++++|.+++..+ +..+++|++|++++|+++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLT-NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCC-CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 555554442 2 26666777777777777764 333 55666 78888888887775333 777888888888888888
Q ss_pred CCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccC
Q 036320 287 GPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 287 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
+. +. +..+++|++|++++|++++..+ +..+++|+.|++++|.+++..
T Consensus 187 ~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 187 DI-SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CC-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred cC-hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 54 33 7778888888888888875543 778888888888888887643
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=3e-24 Score=193.94 Aligned_cols=195 Identities=17% Similarity=0.244 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCc-CCCCCcccCCCCCCCCEEeCcC-cccCCCCCcccCCCCCCCEEE
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNR-FCGIVPQTLSNLTLLYELDLSN-NRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 183 (404)
+++.|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666666555566666666666666665 6554445566666666666666 666655555666666666666
Q ss_pred cccccCCCCCChhhhcCC-Cc---eEEccCC-ccCCCCcccccCCCCcc-eeccccCcCCCCChhHHHhhhcccceeEcc
Q 036320 184 IRFNEFEGPLPPELFNKK-LD---AIFVNNN-RFTSMIPQNFGSNNSAS-VLVIANNKFGGCLPPSVANLANSIEELLLI 257 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~-L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~ 257 (404)
+++|+++ .+|. +.... |+ +|++++| .+++..+..|..+++|+ +|++++|+++ .+|...
T Consensus 112 l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~------------- 175 (239)
T 2xwt_C 112 IFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA------------- 175 (239)
T ss_dssp EEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT-------------
T ss_pred CCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh-------------
Confidence 6666666 3444 22222 33 5555555 44444333444444444 4444444444 333322
Q ss_pred CCCCcccCCcccCCCCCCCEEEcccCc-CCCCCchhccCC-CCCCEeeccCCcCcccCchhccCCCCCcEEeccCC
Q 036320 258 NTSISGCLPPEVGYLYKLRVLDVSLNK-LVGPIPYSIAGL-AHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYN 331 (404)
Q Consensus 258 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 331 (404)
+.. ++|++|+|++|+ +++..+..+.++ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 176 -----------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 -----------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -----------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred -----------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 222 455555555553 553334445555 555555555555552 2222 3445555555544
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.5e-25 Score=213.59 Aligned_cols=231 Identities=15% Similarity=0.159 Sum_probs=187.8
Q ss_pred CcEEEEEcCCCCCCccCc----ccccCCC-CCCEEECCCCcCCCCCcccCCCC-----CCCCEEeCcCcccCCCCCccc-
Q 036320 105 QVVSGIDLNNADIAGFLP----DELGLLS-DLALIHLNSNRFCGIVPQTLSNL-----TLLYELDLSNNRFVGPFPNVV- 173 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l- 173 (404)
.++++||+++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 469999999999998776 7788898 99999999999998877777765 999999999999997776644
Q ss_pred ---CCC-CCCCEEEcccccCCCCCChhhhc------CCCceEEccCCccCCCCc----ccccCCC-CcceeccccCcCCC
Q 036320 174 ---LSL-PMLNYLDIRFNEFEGPLPPELFN------KKLDAIFVNNNRFTSMIP----QNFGSNN-SASVLVIANNKFGG 238 (404)
Q Consensus 174 ---~~l-~~L~~L~L~~n~l~~~~p~~~~~------~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~ 238 (404)
..+ ++|++|++++|.+++..+..+.. ..|++|++++|.+++... ..+..++ +|++|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 444 89999999999998655544432 359999999999996443 3345555 99999999999998
Q ss_pred CChhHHHhh-----hcccceeEccCCCCccc----CCcccCC-CCCCCEEEcccCcCCCCCc----hhccCCCCCCEeec
Q 036320 239 CLPPSVANL-----ANSIEELLLINTSISGC----LPPEVGY-LYKLRVLDVSLNKLVGPIP----YSIAGLAHLELLNL 304 (404)
Q Consensus 239 ~~p~~l~~l-----~~~L~~L~l~~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L 304 (404)
..+..+... . +|++|++++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|++
T Consensus 182 ~~~~~l~~~l~~~~~-~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 182 KNCAELAKFLASIPA-SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp SCHHHHHHHHHTSCT-TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhHHHHHHHHHhCCC-CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 777766654 4 899999999999863 4455555 4699999999999997655 33567899999999
Q ss_pred cCCcCccc-------CchhccCCCCCcEEeccCCcCccc
Q 036320 305 AHNMMSGI-------VPEGVCLLPNLSNFTFSYNFFCEE 336 (404)
Q Consensus 305 ~~N~l~~~-------~p~~l~~l~~L~~L~l~~N~l~~~ 336 (404)
++|.+.+. +++.+..+++|+.||+++|.+.+.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99995543 334677888999999999999876
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=4.7e-26 Score=220.54 Aligned_cols=232 Identities=19% Similarity=0.198 Sum_probs=147.0
Q ss_pred CcEEEEEcCCCCCCccC----cccccCCCCCCEEECCCCc---CCCCCcccC-------CCCCCCCEEeCcCcccCC---
Q 036320 105 QVVSGIDLNNADIAGFL----PDELGLLSDLALIHLNSNR---FCGIVPQTL-------SNLTLLYELDLSNNRFVG--- 167 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~---l~~~~p~~l-------~~l~~L~~L~Ls~n~l~~--- 167 (404)
++++.|+|++|.+++.. +..+..+++|++|+|++|. +++.+|..+ ..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 45777777777776642 2335667777777777753 334445443 567777777777777775
Q ss_pred -CCCcccCCCCCCCEEEcccccCCCCCChhhhc--------------CCCceEEccCCccC-CCCc---ccccCCCCcce
Q 036320 168 -PFPNVVLSLPMLNYLDIRFNEFEGPLPPELFN--------------KKLDAIFVNNNRFT-SMIP---QNFGSNNSASV 228 (404)
Q Consensus 168 -~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~--------------~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~ 228 (404)
.++..+..+++|++|+|++|.++...+..+.. ..|++|++++|+++ +.++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 35556677777777777777775332322222 34777777777776 2333 34556677777
Q ss_pred eccccCcCCC-----CChhHHHhhhcccceeEccCCCCc----ccCCcccCCCCCCCEEEcccCcCCCC----CchhccC
Q 036320 229 LVIANNKFGG-----CLPPSVANLANSIEELLLINTSIS----GCLPPEVGYLYKLRVLDVSLNKLVGP----IPYSIAG 295 (404)
Q Consensus 229 L~l~~n~l~~-----~~p~~l~~l~~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~ 295 (404)
|++++|+++. ..+..+..++ +|++|+|++|.++ ..+|..+..+++|++|+|++|.+++. ++..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 7777777662 1222445555 6777777777775 45566666777777777777777644 3445533
Q ss_pred --CCCCCEeeccCCcCcc----cCchhc-cCCCCCcEEeccCCcCcccC
Q 036320 296 --LAHLELLNLAHNMMSG----IVPEGV-CLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 296 --l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~ 337 (404)
+++|++|+|++|.|++ .+|..+ ..+++|++|++++|.+++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6777777777777775 356555 45677777777777777655
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.3e-23 Score=214.23 Aligned_cols=235 Identities=20% Similarity=0.236 Sum_probs=141.6
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++.|++++|.+++ +|. .+++|++|+|++|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 345555555555553 332 34555555555555553 332 44555555555555553 232 3455566666
Q ss_pred ccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCccc
Q 036320 185 RFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGC 264 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 264 (404)
++|+++ .+|..+ .+|++|++++|++++. |. .+.+|+.|++++|.++ .+| ..+. +|+.|++++|.+++
T Consensus 129 ~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~---~~~~-~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 129 FGNQLT-SLPVLP--PGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-SLP---MLPS-GLQELSVSDNQLAS- 195 (622)
T ss_dssp CSSCCS-CCCCCC--TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCC---CCCT-TCCEEECCSSCCSC-
T ss_pred CCCCCC-cCCCCC--CCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCc---ccCC-CCcEEECCCCCCCC-
Confidence 666555 344432 3366666666666542 22 2345666666666666 344 2223 67777777777774
Q ss_pred CCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcC
Q 036320 265 LPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLT 344 (404)
Q Consensus 265 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~ 344 (404)
+|.. +++|+.|++++|.++ .+|. .+++|+.|++++|+|++ +| ..+++|+.|++++|.|++.++.+.
T Consensus 196 l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~~~~--- 261 (622)
T 3g06_A 196 LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPMLPS--- 261 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCCCT---
T ss_pred CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCcccc---
Confidence 3332 467777777777777 4443 24789999999999985 55 456889999999999997655333
Q ss_pred CCceeeecCCCCCCCCCCCC---CcccccccccCCCcc
Q 036320 345 SKGIAYDDRWNCFPEKPFQR---SNKVCEPVLEHPVEC 379 (404)
Q Consensus 345 ~~~~~l~l~~N~l~~~~~~~---~~~~~~~~~~n~~~c 379 (404)
.++.|++++|+|+.+|... +......+.+|++..
T Consensus 262 -~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 262 -GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -TCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -cCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 3445999999999887432 333334666787753
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.4e-23 Score=189.48 Aligned_cols=182 Identities=18% Similarity=0.206 Sum_probs=144.5
Q ss_pred CCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccC
Q 036320 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNN 209 (404)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~ 209 (404)
..++++++++.++ .+|..+. +.|++|+|++|.+++..+..|.++++|++|+|++|.++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 72 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------- 72 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence 3456777777766 3454443 46677777777777666666666666666666666665
Q ss_pred CccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCC
Q 036320 210 NRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPI 289 (404)
Q Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 289 (404)
+..+..|..+++|++|++++|++++..+..+..+. +|++|++++|++++..+..+..+++|++|+|++|+|++..
T Consensus 73 ----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 73 ----TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp ----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ----ccCHhHhccCCcCCEEECCCCcccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 34445577788999999999999866666677787 9999999999999777777899999999999999999777
Q ss_pred chhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 290 PYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 290 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+++...
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 7789999999999999999998888889999999999999999987643
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.3e-25 Score=215.71 Aligned_cols=240 Identities=16% Similarity=0.195 Sum_probs=191.2
Q ss_pred CcccccCCCCCCEEECCCCcCCCCCc----ccCCCCCCCCEEeCcCc---ccCCCCCccc-------CCCCCCCEEEccc
Q 036320 121 LPDELGLLSDLALIHLNSNRFCGIVP----QTLSNLTLLYELDLSNN---RFVGPFPNVV-------LSLPMLNYLDIRF 186 (404)
Q Consensus 121 ~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~L~~ 186 (404)
++..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 56678889999999999999997633 44788999999999996 4555566555 7899999999999
Q ss_pred ccCCCC----CChhhhcCC-CceEEccCCccCCCCccccc----CC---------CCcceeccccCcCC-CCCh---hHH
Q 036320 187 NEFEGP----LPPELFNKK-LDAIFVNNNRFTSMIPQNFG----SN---------NSASVLVIANNKFG-GCLP---PSV 244 (404)
Q Consensus 187 n~l~~~----~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~-~~~p---~~l 244 (404)
|.+++. ++..+.... |++|++++|.++...+..+. .+ ++|++|++++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 999862 566666655 99999999999754443333 33 89999999999997 3445 466
Q ss_pred HhhhcccceeEccCCCCcc-----cCCcccCCCCCCCEEEcccCcCC----CCCchhccCCCCCCEeeccCCcCccc---
Q 036320 245 ANLANSIEELLLINTSISG-----CLPPEVGYLYKLRVLDVSLNKLV----GPIPYSIAGLAHLELLNLAHNMMSGI--- 312 (404)
Q Consensus 245 ~~l~~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~--- 312 (404)
..+. +|++|++++|.++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|+|++.
T Consensus 184 ~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6777 99999999999983 34447889999999999999996 56788899999999999999999876
Q ss_pred -Cchhcc--CCCCCcEEeccCCcCcc----cCCCCC-CcCCCceeeecCCCCCCCCC
Q 036320 313 -VPEGVC--LLPNLSNFTFSYNFFCE----EEGICN-NLTSKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 313 -~p~~l~--~l~~L~~L~l~~N~l~~----~~~~~~-~l~~~~~~l~l~~N~l~~~~ 361 (404)
++..+. .+++|+.|+|++|.+++ .+|... .....++.|++++|.|++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 566774 48999999999999998 344321 21133445999999999775
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=3.1e-22 Score=204.18 Aligned_cols=224 Identities=22% Similarity=0.281 Sum_probs=167.0
Q ss_pred CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEE
Q 036320 103 KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYL 182 (404)
Q Consensus 103 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 182 (404)
.+.+++.|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|.. +++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 45788889999998876 454 67888999999998885 443 56788899999998884 5543 4888999
Q ss_pred EcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 183 DIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 183 ~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
++++|+++ .+|.. ...|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. .. +|+.|++++|.++
T Consensus 147 ~Ls~N~l~-~l~~~--~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~-~L~~L~L~~N~l~ 214 (622)
T 3g06_A 147 SVSDNQLA-SLPAL--PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PS-ELYKLWAYNNRLT 214 (622)
T ss_dssp ECCSSCCS-CCCCC--CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CT-TCCEEECCSSCCS
T ss_pred ECcCCcCC-CcCCc--cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cc-hhhEEECcCCccc
Confidence 99999888 45542 2348889999998886 44 456788999999998884 5542 23 7888999999888
Q ss_pred ccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCC
Q 036320 263 GCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNN 342 (404)
Q Consensus 263 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 342 (404)
.+|.. +++|++|+|++|+|++ +| ..+++|+.|++++|+|+ .+|. .+++|+.|++++|.|+.+++.+..
T Consensus 215 -~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~ 282 (622)
T 3g06_A 215 -SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIH 282 (622)
T ss_dssp -SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGG
T ss_pred -ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhh
Confidence 44432 5788999999998885 55 45678899999999888 4554 567888999999998855433333
Q ss_pred cCCCceeeecCCCCCCCCCCC
Q 036320 343 LTSKGIAYDDRWNCFPEKPFQ 363 (404)
Q Consensus 343 l~~~~~~l~l~~N~l~~~~~~ 363 (404)
++ .++.|++++|.|++.+++
T Consensus 283 l~-~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 283 LS-SETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SC-TTCEEECCSCCCCHHHHH
T ss_pred cc-ccCEEEecCCCCCCcCHH
Confidence 33 345589999988876543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=201.96 Aligned_cols=201 Identities=19% Similarity=0.180 Sum_probs=169.7
Q ss_pred CcEEEEEcCCCCCCccCcccc--cCCCCCCEEECCCCcCCCCCc----ccCCCCCCCCEEeCcCcccCCCCCcccCCCCC
Q 036320 105 QVVSGIDLNNADIAGFLPDEL--GLLSDLALIHLNSNRFCGIVP----QTLSNLTLLYELDLSNNRFVGPFPNVVLSLPM 178 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 178 (404)
.++++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|+|++|++++..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 459999999999999999888 899999999999999997655 34567999999999999999888899999999
Q ss_pred CCEEEcccccCCCC--CChhh--hcC-CCceEEccCCccCCCCcc----cccCCCCcceeccccCcCCCCChhHHHhhh-
Q 036320 179 LNYLDIRFNEFEGP--LPPEL--FNK-KLDAIFVNNNRFTSMIPQ----NFGSNNSASVLVIANNKFGGCLPPSVANLA- 248 (404)
Q Consensus 179 L~~L~L~~n~l~~~--~p~~~--~~~-~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~- 248 (404)
|++|+|++|++.+. ++... ... .|++|++++|+++. ++. .+..+++|++|++++|++++..|..+..+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999998642 22222 233 49999999999974 232 357889999999999999987787777762
Q ss_pred -cccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcc
Q 036320 249 -NSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSG 311 (404)
Q Consensus 249 -~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 311 (404)
.+|++|++++|+++ .+|..+. ++|++|+|++|+|++. |. +..+++|+.|++++|.|++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 38999999999999 6777664 8999999999999964 43 6788999999999999974
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.6e-23 Score=189.05 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=152.8
Q ss_pred CCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcc-cCCCCCcccCCCCCCCEEEccc-ccCCCCCChhhhcCCCceEE
Q 036320 129 SDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNR-FVGPFPNVVLSLPMLNYLDIRF-NEFEGPLPPELFNKKLDAIF 206 (404)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~~L~~L~ 206 (404)
.+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++ ++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~------------ 97 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-ID------------ 97 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-EC------------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cC------------
Confidence 478999999999987777788889999999999997 8766666788888888888887 77762 22
Q ss_pred ccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccc---eeEccCC-CCcccCCcccCCCCCCC-EEEcc
Q 036320 207 VNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIE---ELLLINT-SISGCLPPEVGYLYKLR-VLDVS 281 (404)
Q Consensus 207 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~Ls 281 (404)
+..|..+++|++|++++|++++ +|. +..+. +|+ +|++++| .+++..+..+.++++|+ +|+++
T Consensus 98 ----------~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 98 ----------PDALKELPLLKFLGIFNTGLKM-FPD-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp ----------TTSEECCTTCCEEEEEEECCCS-CCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred ----------HHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 2345556667777777776663 554 55555 666 8999999 88877777899999999 99999
Q ss_pred cCcCCCCCchhccCCCCCCEeeccCCc-CcccCchhccCC-CCCcEEeccCCcCcccCCC-CCCcCCCceeeecCCC
Q 036320 282 LNKLVGPIPYSIAGLAHLELLNLAHNM-MSGIVPEGVCLL-PNLSNFTFSYNFFCEEEGI-CNNLTSKGIAYDDRWN 355 (404)
Q Consensus 282 ~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~~~-~~~l~~~~~~l~l~~N 355 (404)
+|+++ .+|......++|++|++++|+ +++..+..|..+ ++|+.|++++|.+++.++. +..+. .|+++++
T Consensus 165 ~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~----~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK----ELIARNT 236 (239)
T ss_dssp SCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS----EEECTTC
T ss_pred CCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCc----eeeccCc
Confidence 99999 555544444899999999995 997778889999 9999999999999987664 33333 3888765
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.7e-24 Score=202.97 Aligned_cols=233 Identities=15% Similarity=0.076 Sum_probs=191.0
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCC-CcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGI-VPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
.+++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6789999999999987665 56799999999999999866 778889999999999999999988888999999999999
Q ss_pred cccc-cCCCC-CChhhhcCC-CceEEccCC-ccCCC-CcccccCCC-CcceeccccC--cCC-CCChhHHHhhhccccee
Q 036320 184 IRFN-EFEGP-LPPELFNKK-LDAIFVNNN-RFTSM-IPQNFGSNN-SASVLVIANN--KFG-GCLPPSVANLANSIEEL 254 (404)
Q Consensus 184 L~~n-~l~~~-~p~~~~~~~-L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~p~~l~~l~~~L~~L 254 (404)
+++| .+++. ++..+.... |++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..++ +|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEE
Confidence 9999 67642 555555555 999999999 88864 567788899 9999999999 455 45677777887 99999
Q ss_pred EccCCC-CcccCCcccCCCCCCCEEEcccCc-CCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCc
Q 036320 255 LLINTS-ISGCLPPEVGYLYKLRVLDVSLNK-LVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNF 332 (404)
Q Consensus 255 ~l~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~ 332 (404)
++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++...-..+. .++..|++++|+
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 999999 777778889999999999999995 33222235788999999999999 5543322232 246677899999
Q ss_pred CcccCCCCCC
Q 036320 333 FCEEEGICNN 342 (404)
Q Consensus 333 l~~~~~~~~~ 342 (404)
+++..|....
T Consensus 305 l~~~~~~~~~ 314 (336)
T 2ast_B 305 FTTIARPTIG 314 (336)
T ss_dssp SCCTTCSSCS
T ss_pred CccccCCccc
Confidence 9998886543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.7e-22 Score=189.57 Aligned_cols=191 Identities=21% Similarity=0.365 Sum_probs=166.1
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
+.+++.|+++++.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|++++. + .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 56899999999999874 4 58899999999999999996544 99999999999999999864 3 699999999999
Q ss_pred cccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 184 IRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
+++|+++ .++. +.... |++|++++|.+++..+ +..+++|++|++++|++++ ++. +..+. +|++|++++|.++
T Consensus 114 l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLS-KLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCT-TCCEEECCSSCCC
T ss_pred CCCCCCC-Cchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCC-CCCEEECCCCccC
Confidence 9999998 4665 44444 9999999999997644 8899999999999999995 554 77787 9999999999999
Q ss_pred ccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcc
Q 036320 263 GCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSG 311 (404)
Q Consensus 263 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 311 (404)
+..+ +..+++|++|+|++|++++.. .+..+++|+.|++++|.+++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 6543 888999999999999999654 38899999999999999985
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.89 E-value=3.1e-23 Score=209.22 Aligned_cols=197 Identities=25% Similarity=0.368 Sum_probs=153.9
Q ss_pred cccce-eeCCCCCCCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCC
Q 036320 89 NYRGI-YCAPPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVG 167 (404)
Q Consensus 89 ~w~gv-~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 167 (404)
.|.|+ .|.. .+++.|++++|++++ +|..+ .++|++|+|++|+|+ .+| ..+++|++|++++|+|++
T Consensus 49 ~~~~l~~C~~-------~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 49 AVSLLKECLI-------NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST 114 (571)
T ss_dssp HHHHHHHHHH-------TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC
T ss_pred hhhhcccccc-------CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC
Confidence 68888 6753 479999999999998 66655 378999999999999 566 457899999999999996
Q ss_pred CCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhh
Q 036320 168 PFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANL 247 (404)
Q Consensus 168 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 247 (404)
+|. +.+ +|++|++++|++++ +|. ....|++|++++|.+++ +|. .+++|++|++++|++++ +|. +.
T Consensus 115 -ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-- 179 (571)
T 3cvr_A 115 -LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-- 179 (571)
T ss_dssp -CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--
T ss_pred -cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--
Confidence 676 655 89999999999985 777 33459999999999887 554 56788888888888885 666 43
Q ss_pred hcccceeEccCCCCcccCCcccCCCCCC-------CEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCC
Q 036320 248 ANSIEELLLINTSISGCLPPEVGYLYKL-------RVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLL 320 (404)
Q Consensus 248 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 320 (404)
. +|+.|++++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 180 ~-~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 180 E-SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp T-TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred C-CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3 7888888888888 5555 543 66 88888888888 567777778888888888888887777776554
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=3.9e-25 Score=218.71 Aligned_cols=229 Identities=19% Similarity=0.144 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCCCc----cCcccccCCCCCCEEECCCCcCCCCCcccC-----CCCCCCCEEeCcCcccCCCC----Ccc
Q 036320 106 VVSGIDLNNADIAG----FLPDELGLLSDLALIHLNSNRFCGIVPQTL-----SNLTLLYELDLSNNRFVGPF----PNV 172 (404)
Q Consensus 106 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~~----p~~ 172 (404)
++++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 56677777777663 345666677777777777776654322222 22445666666666665432 334
Q ss_pred cCCCCCCCEEEcccccCCCCCChhhhc------CCCceEEccCCccCCC----CcccccCCCCcceeccccCc-------
Q 036320 173 VLSLPMLNYLDIRFNEFEGPLPPELFN------KKLDAIFVNNNRFTSM----IPQNFGSNNSASVLVIANNK------- 235 (404)
Q Consensus 173 l~~l~~L~~L~L~~n~l~~~~p~~~~~------~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~------- 235 (404)
+..+++|++|++++|.++...+..+.. ..|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 445556666666666554222222211 1355555555555442 23334444455555555554
Q ss_pred ----------------------CCCC----ChhHHHhhhcccceeEccCCCCcccCCcccC-----CCCCCCEEEcccCc
Q 036320 236 ----------------------FGGC----LPPSVANLANSIEELLLINTSISGCLPPEVG-----YLYKLRVLDVSLNK 284 (404)
Q Consensus 236 ----------------------l~~~----~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~ 284 (404)
+++. ++..+..++ +|++|++++|.+.+..+..+. ..++|++|++++|.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 4421 333333343 455555555544432221111 12355555555555
Q ss_pred CCCC----CchhccCCCCCCEeeccCCcCcccCchhccC-----CCCCcEEeccCCcCcc
Q 036320 285 LVGP----IPYSIAGLAHLELLNLAHNMMSGIVPEGVCL-----LPNLSNFTFSYNFFCE 335 (404)
Q Consensus 285 l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~l~~N~l~~ 335 (404)
+++. ++..+..+++|++|++++|++++..+..+.. .++|++|++++|.+++
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 5433 2334444555566666665555443333321 4456666666665553
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=5.8e-25 Score=217.48 Aligned_cols=208 Identities=19% Similarity=0.160 Sum_probs=154.7
Q ss_pred CCcEEEEEcCCCCCCccCcccc-cCCC----CCCEEECCCCcCCC----CCcccCCCCCCCCEEeCcCcccCCCCCccc-
Q 036320 104 IQVVSGIDLNNADIAGFLPDEL-GLLS----DLALIHLNSNRFCG----IVPQTLSNLTLLYELDLSNNRFVGPFPNVV- 173 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l-~~l~----~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l- 173 (404)
.+++++|++++|.+.+..+..+ ..++ +|++|++++|.++. .++..+.++++|++|++++|.+++..+..+
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence 4689999999999987544333 3455 79999999999984 458889999999999999999975433332
Q ss_pred ----CCCCCCCEEEcccccCCCCC----ChhhhcC-CCceEEccCCccCCCCccccc-----CCCCcceeccccCcCCCC
Q 036320 174 ----LSLPMLNYLDIRFNEFEGPL----PPELFNK-KLDAIFVNNNRFTSMIPQNFG-----SNNSASVLVIANNKFGGC 239 (404)
Q Consensus 174 ----~~l~~L~~L~L~~n~l~~~~----p~~~~~~-~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~ 239 (404)
...++|++|++++|.+++.. +..+... .|++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 33678999999999998543 3333333 499999999998865444443 356999999999999853
Q ss_pred ----ChhHHHhhhcccceeEccCCCCcccC-----CcccCCCCCCCEEEcccCcCCCC----CchhccCCCCCCEeeccC
Q 036320 240 ----LPPSVANLANSIEELLLINTSISGCL-----PPEVGYLYKLRVLDVSLNKLVGP----IPYSIAGLAHLELLNLAH 306 (404)
Q Consensus 240 ----~p~~l~~l~~~L~~L~l~~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~ 306 (404)
++..+..+. +|++|++++|.+.+.. +..+..+++|++|++++|++++. ++..+..+++|++|++++
T Consensus 215 ~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 215 NCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 566777777 8999999999887532 22333577888888888888743 455566667777777777
Q ss_pred CcCccc
Q 036320 307 NMMSGI 312 (404)
Q Consensus 307 N~l~~~ 312 (404)
|.+++.
T Consensus 294 n~i~~~ 299 (461)
T 1z7x_W 294 NELGDE 299 (461)
T ss_dssp CCCHHH
T ss_pred CCCchH
Confidence 776543
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=3.1e-22 Score=176.71 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=95.1
Q ss_pred CCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEc
Q 036320 129 SDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFV 207 (404)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l 207 (404)
++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+.... |++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 3555666666665554444455556666666666666544444455566666666666665522222223332 666666
Q ss_pred cCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCC
Q 036320 208 NNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVG 287 (404)
Q Consensus 208 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 287 (404)
++|++++..+..+..+++|++|++++|++++..+..+..+. +|++|++++|.+.+ .+++|++|+++.|+++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC-CccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 66666655555566666777777777776644444455555 67777777776553 24567777777777777
Q ss_pred CCchhccCCCC
Q 036320 288 PIPYSIAGLAH 298 (404)
Q Consensus 288 ~~p~~l~~l~~ 298 (404)
.+|..++.++.
T Consensus 180 ~ip~~~~~l~~ 190 (208)
T 2o6s_A 180 VVRNSAGSVAP 190 (208)
T ss_dssp TBBCTTSSBCT
T ss_pred eeeccCccccC
Confidence 77776665543
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=3.4e-22 Score=190.90 Aligned_cols=241 Identities=17% Similarity=0.181 Sum_probs=185.1
Q ss_pred CCcccceeeCCCC--CCC--CCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCc-ccCCCCCCCCE-EeC
Q 036320 87 VCNYRGIYCAPPP--YDH--KIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVP-QTLSNLTLLYE-LDL 160 (404)
Q Consensus 87 ~C~w~gv~c~~~~--~~~--~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~L 160 (404)
.|.+..|.|.... ..+ -..++++|+|++|+|+.+.+..|.++++|++|+|++|++.+.+| ..|.++++|++ +++
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 4778889996421 111 13579999999999998777789999999999999999977665 57889988875 667
Q ss_pred cCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhh-c-CCCceEEccC-CccCCCCcccccCCC-CcceeccccCcC
Q 036320 161 SNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELF-N-KKLDAIFVNN-NRFTSMIPQNFGSNN-SASVLVIANNKF 236 (404)
Q Consensus 161 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~-~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l 236 (404)
++|+++...|..|.++++|++|++++|+++ .+|...+ . ..+..+++.+ +++....+..|..+. .++.|++++|+|
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 779999888899999999999999999998 4554333 2 3488888865 567665556666664 689999999999
Q ss_pred CCCChhHHHhhhcccceeEccC-CCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCch
Q 036320 237 GGCLPPSVANLANSIEELLLIN-TSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPE 315 (404)
Q Consensus 237 ~~~~p~~l~~l~~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 315 (404)
+ .++...+... +|+++++.+ |.++...+..|.++++|++|||++|+|+...+.. +.+|+.|.+.++.--..+|
T Consensus 167 ~-~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 167 Q-EIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp C-EECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-
T ss_pred c-CCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-
Confidence 9 5777777776 899999985 6666544567899999999999999999443333 5566666655543333666
Q ss_pred hccCCCCCcEEeccCCcCc
Q 036320 316 GVCLLPNLSNFTFSYNFFC 334 (404)
Q Consensus 316 ~l~~l~~L~~L~l~~N~l~ 334 (404)
.+..+++|+.+++.++.-+
T Consensus 241 ~l~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 241 TLEKLVALMEASLTYPSHC 259 (350)
T ss_dssp CTTTCCSCCEEECSCHHHH
T ss_pred CchhCcChhhCcCCCCccc
Confidence 4788999999999876543
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=6.3e-22 Score=199.65 Aligned_cols=181 Identities=24% Similarity=0.329 Sum_probs=156.1
Q ss_pred CCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccC
Q 036320 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNN 209 (404)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~ 209 (404)
+|+.|++++|.+++ +|..+ .++|++|+|++|+|+ .+| ..+++|++|++++|++++ +|. +.. .|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence 89999999999997 67655 378999999999999 677 568999999999999995 888 444 899999999
Q ss_pred CccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCC
Q 036320 210 NRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPI 289 (404)
Q Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 289 (404)
|++++ +|. .+++|++|++++|.+++ +|. .+. +|++|++++|.+++ +|. +. ++|++|+|++|+|+ .+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~-~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT-SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC-CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 99998 555 67999999999999995 776 445 89999999999996 666 65 99999999999999 66
Q ss_pred chhccCCCCC-------CEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 290 PYSIAGLAHL-------ELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 290 p~~l~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.|++.+|
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 76 554 77 99999999999 678888889999999999999999776
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.3e-21 Score=170.12 Aligned_cols=180 Identities=18% Similarity=0.183 Sum_probs=110.7
Q ss_pred CCcccceeeCCCCC----CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcC
Q 036320 87 VCNYRGIYCAPPPY----DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSN 162 (404)
Q Consensus 87 ~C~w~gv~c~~~~~----~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 162 (404)
.|.|.++.|..... .....++++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 47888888864211 11234566677777766665555566666777777777766655555566666777777777
Q ss_pred cccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCCh
Q 036320 163 NRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLP 241 (404)
Q Consensus 163 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 241 (404)
|++++..+..+.++++|++|++++|++++..+..+.... |++|++++|++++..+..+..+++|++|++++|.+.+..|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 766655555566666777777777766633333333333 6777777776666555556666667777777666654332
Q ss_pred hHHHhhhcccceeEccCCCCcccCCcccCCCCC
Q 036320 242 PSVANLANSIEELLLINTSISGCLPPEVGYLYK 274 (404)
Q Consensus 242 ~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~ 274 (404)
+|++|+++.|+++|.+|..++.++.
T Consensus 166 --------~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 166 --------GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------CHHHHHHHHHhCCceeeccCccccC
Confidence 5666666666666666666554443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=9.7e-22 Score=187.72 Aligned_cols=240 Identities=14% Similarity=0.101 Sum_probs=177.2
Q ss_pred EEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCC-cccCCCCCCCE-EEcc
Q 036320 108 SGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP-NVVLSLPMLNY-LDIR 185 (404)
Q Consensus 108 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~L~ 185 (404)
+.++.++++++. +|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 357899999986 56555 3689999999999997666789999999999999999876555 56889998875 6677
Q ss_pred cccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceecccc-CcCCCCChhHHHhhhcccceeEccCCCCcc
Q 036320 186 FNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIAN-NKFGGCLPPSVANLANSIEELLLINTSISG 263 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 263 (404)
.|+++...|..+.... |++|++++|++....+..+....++..|++.+ +++...-+..+..+...++.|++++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 8999844455555554 99999999999987776777777888898865 566643344455555478999999999995
Q ss_pred cCCcccCCCCCCCEEEccc-CcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCC
Q 036320 264 CLPPEVGYLYKLRVLDVSL-NKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNN 342 (404)
Q Consensus 264 ~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 342 (404)
. +.......+|++|++++ |.++...+..|.++++|++|++++|+|+...+..+. +|+.|.+.++.--...|....
T Consensus 169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCCTTT
T ss_pred C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCCchh
Confidence 4 44444567899999985 677744446789999999999999999955444444 555555554443345555555
Q ss_pred cCCCceeeecCCC
Q 036320 343 LTSKGIAYDDRWN 355 (404)
Q Consensus 343 l~~~~~~l~l~~N 355 (404)
+... +.++++++
T Consensus 245 l~~L-~~l~l~~~ 256 (350)
T 4ay9_X 245 LVAL-MEASLTYP 256 (350)
T ss_dssp CCSC-CEEECSCH
T ss_pred CcCh-hhCcCCCC
Confidence 4443 33676543
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=4.4e-20 Score=165.52 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=124.1
Q ss_pred CCCCCCCCCcccceeeCCCCC----CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCC
Q 036320 80 TNWVGPSVCNYRGIYCAPPPY----DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLL 155 (404)
Q Consensus 80 ~~w~~~~~C~w~gv~c~~~~~----~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 155 (404)
..|.+.+.|.|.+|.|..... .....+++.|++++|.+.+..+..|.++++|++|+|++|+++...+..|.++++|
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence 446778899999999975321 1123678888888888888778888888888888888888876666667888888
Q ss_pred CEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccC
Q 036320 156 YELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANN 234 (404)
Q Consensus 156 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 234 (404)
++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+.... |++|++++|++++..+..+..+++|+.|++++|
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 88888888888776667788888888888888888 7777776655 888888888888766667778888888888888
Q ss_pred cCCCC
Q 036320 235 KFGGC 239 (404)
Q Consensus 235 ~l~~~ 239 (404)
.+...
T Consensus 170 ~~~c~ 174 (229)
T 3e6j_A 170 PWDCE 174 (229)
T ss_dssp CBCTT
T ss_pred CccCC
Confidence 87744
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1.2e-20 Score=175.55 Aligned_cols=169 Identities=23% Similarity=0.316 Sum_probs=71.1
Q ss_pred CCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcC-CCceE
Q 036320 127 LLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNK-KLDAI 205 (404)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L 205 (404)
.+++|++|++++|.++.. + .+..+++|++|++++|++++..+ +.++++|++|++++|.++ .++. +... .|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hccCCCCCEE
Confidence 344455555555554432 2 24445555555555555543222 445555555555555544 2221 1111 13333
Q ss_pred EccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcC
Q 036320 206 FVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKL 285 (404)
Q Consensus 206 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 285 (404)
++++|++++. ..+..+++|++|++++|++++. ..+..+. +|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCC-CCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 3333333321 2233444444444444444421 2333333 44444444444443222 44444444444444444
Q ss_pred CCCCchhccCCCCCCEeeccCCcCc
Q 036320 286 VGPIPYSIAGLAHLELLNLAHNMMS 310 (404)
Q Consensus 286 ~~~~p~~l~~l~~L~~L~L~~N~l~ 310 (404)
++ ++ .+..+++|+.|++++|.+.
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-Ch-hhccCCCCCEEECcCCccc
Confidence 42 22 2444444444444444443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=3.2e-20 Score=172.59 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=159.2
Q ss_pred CCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceEEcc
Q 036320 130 DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVN 208 (404)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~ 208 (404)
++..+.+..+.+++..+ +..+++|++|++++|.+++. + .+..+++|++|++++|+++ .++. +.... |++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECC
Confidence 34445566666665433 45789999999999999854 4 4889999999999999999 4555 55544 9999999
Q ss_pred CCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCC
Q 036320 209 NNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGP 288 (404)
Q Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 288 (404)
+|.+++. ..+..+++|++|++++|++++ + ..+..++ +|++|++++|.+++. ..+..+++|++|++++|++++.
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCC-C-GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCC-C-hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 9999873 348999999999999999985 4 4677887 999999999999965 6788999999999999999965
Q ss_pred CchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccC
Q 036320 289 IPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 289 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
.+ +..+++|+.|++++|+|++ ++ .+..+++|+.|++++|.++...
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred hh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 44 8999999999999999985 44 4889999999999999998743
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.83 E-value=3.8e-22 Score=207.82 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=72.8
Q ss_pred CchHHHHHHHHHHHHcccCCCCCCCCCCC--CCCCcccceeeCCCCCCCCCCcEEEEEcCCCCCCcc-------------
Q 036320 56 KLHQAYIALQAWKKVIYSDPNNFTTNWVG--PSVCNYRGIYCAPPPYDHKIQVVSGIDLNNADIAGF------------- 120 (404)
Q Consensus 56 ~~~~~~~aL~~~k~~~~~~~~~~l~~w~~--~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~------------- 120 (404)
....++.+++++...+....+.....|.. ...+.|.++.+.. ++++.|+|.+|.+...
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-------PLTPKIELFANGKDEANQALLQHKKLSQY 201 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-------CccceEEeeCCCCCcchhhHhhcCccCcc
Confidence 44556788999988776555555566743 3346787776653 3455555555554442
Q ss_pred --------------CcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEccc
Q 036320 121 --------------LPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRF 186 (404)
Q Consensus 121 --------------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 186 (404)
.+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|.++++|++|+|++
T Consensus 202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred cccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 1333444444444444444444 23333334444444444444444 3444444444444444444
Q ss_pred ccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccC
Q 036320 187 NEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCL 265 (404)
Q Consensus 187 n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 265 (404)
|.|+ .+|..+.... |++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+......+..+++++|.+++.+
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 4444 4444443332 444444444443 233334444444444444444444444444333212223344444444433
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=5.5e-20 Score=163.85 Aligned_cols=154 Identities=21% Similarity=0.283 Sum_probs=117.3
Q ss_pred CEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCC
Q 036320 180 NYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINT 259 (404)
Q Consensus 180 ~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n 259 (404)
+.++++++.++ .+|..+. ..+++|++++|++++..+..|..+++|++|++++|++++..|..+..+. +|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCC
Confidence 34555555555 4554432 3366666666666666666777778888888888888876677777777 8888888888
Q ss_pred CCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCccc
Q 036320 260 SISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEE 336 (404)
Q Consensus 260 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 336 (404)
.++...+..+.++++|++|+|++|+|++..+..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|.+...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 88866666678888888888888888877788888888899999999988877777788888889999998888653
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=164.05 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=93.8
Q ss_pred CceEEccCCccCCCCc-ccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEc
Q 036320 202 LDAIFVNNNRFTSMIP-QNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDV 280 (404)
Q Consensus 202 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 280 (404)
+++|++++|++++..+ ..|..+++|++|++++|++++..+..+..+. +|++|++++|.+++..+..+.++++|++|+|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 3455555555554432 3356666777777777777655555666666 7777777777777666666777777777777
Q ss_pred ccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccC
Q 036320 281 SLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 281 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
++|+|++..|..+..+++|++|+|++|+|++..|..|..+++|+.|++++|.+.+..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 777777766777777777778888877777777777777777888888888776543
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=5.1e-20 Score=187.48 Aligned_cols=169 Identities=24% Similarity=0.381 Sum_probs=93.0
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
+.+++.|++++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+++ ++ .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 44566666666666553 2 35666666666666666665333 5666666666666666653 22 456666666666
Q ss_pred cccccCCCCCChhhhcC-CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 184 IRFNEFEGPLPPELFNK-KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
|++|.++ .++. +... .|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+. +|+.|+|++|.|+
T Consensus 116 Ls~N~l~-~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGIS-DING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCC-CCGG-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCC
T ss_pred ecCCCCC-CCcc-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC-CCCEEECcCCCCC
Confidence 6666665 2332 2222 266666666655543 345555555555555555554333 44444 5555555555555
Q ss_pred ccCCcccCCCCCCCEEEcccCcCCC
Q 036320 263 GCLPPEVGYLYKLRVLDVSLNKLVG 287 (404)
Q Consensus 263 ~~~p~~~~~l~~L~~L~Ls~N~l~~ 287 (404)
+. ..+..+++|+.|+|++|.+++
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CC--hHHccCCCCCEEEccCCcCcC
Confidence 32 235555555555555555553
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3.5e-19 Score=159.63 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=113.2
Q ss_pred CEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCC
Q 036320 180 NYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINT 259 (404)
Q Consensus 180 ~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n 259 (404)
+.++.+++.++ .+|..+. ..|++|++++|++++..+..|..+++|++|++++|+++...+..+..+. +|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCEEECCCC
Confidence 34555555554 4444332 3366666666666666666677777888888888887643334456666 7888888888
Q ss_pred CCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 260 SISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 260 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
++++..+..+..+++|++|+|++|+|+ .+|..+..+++|+.|++++|+|++..+..+..+++|+.|++++|.+.+..+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 888766677788888888888888888 678788888888889998888887666778888888889998888876543
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.3e-19 Score=173.60 Aligned_cols=175 Identities=22% Similarity=0.195 Sum_probs=108.3
Q ss_pred CEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccC-CCCCCCEEEcccccCCCCCChhhhcCC-CceEEccC
Q 036320 132 ALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVL-SLPMLNYLDIRFNEFEGPLPPELFNKK-LDAIFVNN 209 (404)
Q Consensus 132 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~ 209 (404)
+.++++++.++. +|..+. ..+++|+|++|++++..+..+. ++++|++|+|++|++++..+..+.... |++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888888884 665543 4588899999999877777776 888888888888888743334444433 66666666
Q ss_pred CccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCccc---CCCCCCCEEEcccCcCC
Q 036320 210 NRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEV---GYLYKLRVLDVSLNKLV 286 (404)
Q Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~ 286 (404)
|++++..+..|..+++|++|+|++|+|.+..+..+..+. +|++|+|++|.+++..+..+ ..+++|++|+|++|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 666655555566666666666666666644455555555 56666666665554333333 34555555555555555
Q ss_pred CCCchhccCCCC--CCEeeccCCcCc
Q 036320 287 GPIPYSIAGLAH--LELLNLAHNMMS 310 (404)
Q Consensus 287 ~~~p~~l~~l~~--L~~L~L~~N~l~ 310 (404)
+..+..+..++. ++.|+|++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 444444444444 255555555554
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2.4e-20 Score=170.79 Aligned_cols=170 Identities=21% Similarity=0.242 Sum_probs=130.1
Q ss_pred CCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
+..++.++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 456677788888888753 47888999999999999985 45 68889999999999999986544 89999999999
Q ss_pred cccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcc
Q 036320 184 IRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISG 263 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 263 (404)
+++|+++ .+|.... ..|++|++++|++++. ..+..+++|++|++++|++++ ++ .+..+. +|++|++++|.+++
T Consensus 92 L~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~-~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLK-NLNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLS-KLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCS-CCTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCT-TCCEEECTTSCCCB
T ss_pred CCCCccC-CcCcccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCC-CCCEEECCCCcCcc
Confidence 9999998 4555443 5588888888888764 347777888888888888774 33 466666 77777777777775
Q ss_pred cCCcccCCCCCCCEEEcccCcCCCC
Q 036320 264 CLPPEVGYLYKLRVLDVSLNKLVGP 288 (404)
Q Consensus 264 ~~p~~~~~l~~L~~L~Ls~N~l~~~ 288 (404)
. ..+..+++|++|++++|.+++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 5566777777777777777644
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.9e-19 Score=172.56 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=148.8
Q ss_pred EEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCC-CCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEccc
Q 036320 108 SGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLS-NLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRF 186 (404)
Q Consensus 108 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 186 (404)
+.+++++++++. +|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 368999999987 565543 5689999999999988888887 999999999999999988888899999999999999
Q ss_pred ccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHH----HhhhcccceeEccCCCC
Q 036320 187 NEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSV----ANLANSIEELLLINTSI 261 (404)
Q Consensus 187 n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l----~~l~~~L~~L~l~~n~l 261 (404)
|++++..+..+.... |++|++++|++++..+..|..+++|++|+|++|+++ .+|..+ ..+. +|+.|+|++|.|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~-~L~~L~L~~N~l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLP-KLMLLDLSSNKL 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CT-TCCEEECCSSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCC-cCCEEECCCCCC
Confidence 999954444555554 999999999999988899999999999999999999 466554 4566 999999999999
Q ss_pred cccCCcccCCCCC--CCEEEcccCcCCC
Q 036320 262 SGCLPPEVGYLYK--LRVLDVSLNKLVG 287 (404)
Q Consensus 262 ~~~~p~~~~~l~~--L~~L~Ls~N~l~~ 287 (404)
++..+..+..++. |+.|+|++|.+.-
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccC
Confidence 9766677777776 4889999999873
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=4.5e-19 Score=180.53 Aligned_cols=190 Identities=21% Similarity=0.273 Sum_probs=151.8
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
.+..+.+..+.+.+.++ +..+++|+.|++++|.+... + .+..+++|++|+|++|++++..+ +..+++|++|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34445566666665443 56788899999999998853 4 48889999999999999986544 8889999999999
Q ss_pred cccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCccc
Q 036320 186 FNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGC 264 (404)
Q Consensus 186 ~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 264 (404)
+|.++ .++ .+.... |++|++++|.+.+. ..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|.+.+.
T Consensus 96 ~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIK-DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCC-CCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-TCSEEECCSSCCCCC
T ss_pred CCCCC-CCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccC-CCCEEECcCCcCCCc
Confidence 99998 455 444444 99999999999874 4588889999999999999854 5677777 899999999999876
Q ss_pred CCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCccc
Q 036320 265 LPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGI 312 (404)
Q Consensus 265 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 312 (404)
.| +..+++|+.|+|++|+|++. + .+..+++|+.|+|++|.+.+.
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred hh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 55 88899999999999999853 4 588899999999999988754
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.3e-18 Score=154.99 Aligned_cols=132 Identities=24% Similarity=0.327 Sum_probs=70.7
Q ss_pred CCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhh-cCC-CceEE
Q 036320 129 SDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELF-NKK-LDAIF 206 (404)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~~~-L~~L~ 206 (404)
+.|++|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|...+ ... |++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEE
Confidence 44555555555555444445555555555555555555555555555555555555555555 3333322 222 55555
Q ss_pred ccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 207 VNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 207 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
+++|++++..+..|..+++|++|++++|++++..+..+..+. +|++|++++|.+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEEeCCCCcC
Confidence 555555555555555555566666666655544444444454 5666666665554
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=155.54 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=108.8
Q ss_pred CEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCC-cccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccCC
Q 036320 132 ALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFP-NVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNN 210 (404)
Q Consensus 132 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n 210 (404)
+.+++++|.++. +|..+. ..+++|+|++|++++..+ ..|..+++|++|+|++|+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------- 70 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence 467777777763 454442 345677777777765533 34566666666666666655
Q ss_pred ccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCc
Q 036320 211 RFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIP 290 (404)
Q Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 290 (404)
+..+..|..+++|++|++++|++++..+..+..+. +|++|++++|++++..|..+.++++|++|+|++|+|++..|
T Consensus 71 ---~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 71 ---DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp ---EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred ---EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 33444566677777777777777765555566666 78888888888887777888888888888888888887778
Q ss_pred hhccCCCCCCEeeccCCcCcccC
Q 036320 291 YSIAGLAHLELLNLAHNMMSGIV 313 (404)
Q Consensus 291 ~~l~~l~~L~~L~L~~N~l~~~~ 313 (404)
..+..+++|+.|++++|.+.+..
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEECSG
T ss_pred HHhcCCCCCCEEEecCcCCcCCC
Confidence 88888888888888888887553
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.1e-21 Score=198.53 Aligned_cols=190 Identities=24% Similarity=0.274 Sum_probs=123.2
Q ss_pred CCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcc-------------cCCCCCcccCCCCCCCEEE-cccccCCCC
Q 036320 127 LLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNR-------------FVGPFPNVVLSLPMLNYLD-IRFNEFEGP 192 (404)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~~ 192 (404)
.+++|+.|+|++|+++ .+|..++.+++|++|++++|. +.+..|..+.++++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3445555555555554 345555555555555554443 2333344444444444444 3333221
Q ss_pred CChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCC
Q 036320 193 LPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYL 272 (404)
Q Consensus 193 ~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l 272 (404)
.|+.+.+++|.++...+ ..|+.|++++|.+++ +|. +..+. +|+.|++++|.++ .+|..+..+
T Consensus 424 --------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhhcC
Confidence 12222333334432211 247888888888884 665 77777 8888888888888 778888888
Q ss_pred CCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccC-chhccCCCCCcEEeccCCcCcccCCC
Q 036320 273 YKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIV-PEGVCLLPNLSNFTFSYNFFCEEEGI 339 (404)
Q Consensus 273 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~~ 339 (404)
++|++|+|++|+|++ +| .+..+++|+.|+|++|+|++.. |..+..+++|+.|+|++|.|++.++.
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 888888888888885 56 7888888888888888888776 88888888888888888888887664
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-18 Score=152.51 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=76.1
Q ss_pred cCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceE
Q 036320 126 GLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAI 205 (404)
Q Consensus 126 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L 205 (404)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|+++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~--------------- 101 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVT--------------- 101 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCB---------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccC---------------
Confidence 34455666666666665 333 35555666666666664442 124555555555555555544
Q ss_pred EccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCC-CcccCCcccCCCCCCCEEEcccCc
Q 036320 206 FVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTS-ISGCLPPEVGYLYKLRVLDVSLNK 284 (404)
Q Consensus 206 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~ 284 (404)
+..+..+..+++|++|++++|++++..+..+..++ +|++|++++|. +. .++ .+..+++|++|++++|+
T Consensus 102 --------~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 102 --------SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-KVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp --------GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS-SCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBC
T ss_pred --------cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC-CCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCC
Confidence 23334455555666666666665544455555444 55555555554 33 222 34445555555555555
Q ss_pred CCCCCchhccCCCCCCEeeccCCcC
Q 036320 285 LVGPIPYSIAGLAHLELLNLAHNMM 309 (404)
Q Consensus 285 l~~~~p~~l~~l~~L~~L~L~~N~l 309 (404)
+++ ++ .+..+++|+.|++++|+|
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC--
T ss_pred CcC-hH-HhccCCCCCEEEeeCccc
Confidence 542 22 344444455555554444
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=5.4e-19 Score=161.79 Aligned_cols=170 Identities=20% Similarity=0.258 Sum_probs=98.9
Q ss_pred CCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCC-CceE
Q 036320 127 LLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKK-LDAI 205 (404)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~-L~~L 205 (404)
.+.+++.+++++|.+++. + .+..+++|++|++++|.++. ++ .+..+++|++|++++|+++ .++. +.... |++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEE
Confidence 345566777777777743 2 46677788888888887773 44 5777777788887777777 3333 33322 5555
Q ss_pred EccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcC
Q 036320 206 FVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKL 285 (404)
Q Consensus 206 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 285 (404)
++++|++++. +. +.. + +|++|++++|++++. ..+..+++|++|++++|++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~-------------------------~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-A-------------------------CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-S-------------------------SCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccCCc-Cc-ccc-C-------------------------cccEEEccCCccCCC--hhhcCcccccEEECCCCcC
Confidence 5555555542 11 111 3 455555555555532 2355556666666666666
Q ss_pred CCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCccc
Q 036320 286 VGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEE 336 (404)
Q Consensus 286 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 336 (404)
++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 141 ~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 141 KSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 532 2 355556666666666666544 4455556666666666665544
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.4e-18 Score=151.92 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=105.9
Q ss_pred CCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCccee
Q 036320 150 SNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVL 229 (404)
Q Consensus 150 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 229 (404)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-----------------------~--~~~l~~l~~L~~L 93 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-----------------------N--YNPISGLSNLERL 93 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-----------------------C--CGGGTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-----------------------c--chhhhcCCCCCEE
Confidence 34455666666666655 333 3555555555555555433 1 1346677888888
Q ss_pred ccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCc-CCCCCchhccCCCCCCEeeccCCc
Q 036320 230 VIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNK-LVGPIPYSIAGLAHLELLNLAHNM 308 (404)
Q Consensus 230 ~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~ 308 (404)
++++|++++..+..+..++ +|++|++++|.+++..+..+..+++|++|++++|+ ++ .++ .+..+++|++|++++|+
T Consensus 94 ~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 94 RIMGKDVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp EEECTTCBGGGSCCCTTCT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBC
T ss_pred EeECCccCcccChhhcCCC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCC
Confidence 8888888866677777777 78888888888887777778888888888888887 65 455 57778888888888888
Q ss_pred CcccCchhccCCCCCcEEeccCCcCcc
Q 036320 309 MSGIVPEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 309 l~~~~p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
+++ ++ .+..+++|+.|++++|+|.+
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 875 33 57778888888888887754
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=5.8e-19 Score=183.81 Aligned_cols=175 Identities=23% Similarity=0.203 Sum_probs=110.3
Q ss_pred CCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCC
Q 036320 101 DHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLN 180 (404)
Q Consensus 101 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 180 (404)
+..+..++.|+|++|.+.. +|..+.++++|++|+|++|.|+ .+|..|+++++|++|+|++|.|+ .+|..|.++++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 4456778888888888874 6666678888888888888888 67888888888888888888888 6788888888888
Q ss_pred EEEcccccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCC-CcceeccccCcCCCCChhHHHhhhcccceeEccC
Q 036320 181 YLDIRFNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNN-SASVLVIANNKFGGCLPPSVANLANSIEELLLIN 258 (404)
Q Consensus 181 ~L~L~~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~ 258 (404)
+|+|++|.++ .+|..+.... |++|+|++|.+++.+|..+..+. .+..+++++|.+++.+|. .|+.|+++.
T Consensus 297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~ 368 (727)
T 4b8c_D 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINT 368 (727)
T ss_dssp EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C--------
T ss_pred EEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeec
Confidence 8888888887 7888777665 88888888888888777765432 223467888888887775 455566666
Q ss_pred C--------CCcccCCcccCCCCCCCEEEcccCcCC
Q 036320 259 T--------SISGCLPPEVGYLYKLRVLDVSLNKLV 286 (404)
Q Consensus 259 n--------~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 286 (404)
| .+.+..+..+..+..++...+++|-+.
T Consensus 369 n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 369 DGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------------CCC
T ss_pred ccccccccCCccccccchhhcccccceeeeeccccc
Confidence 5 233333334445555566666666654
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=3e-20 Score=189.42 Aligned_cols=141 Identities=13% Similarity=-0.034 Sum_probs=94.6
Q ss_pred cCCCCcceeccccCcCCCCChhHHHh-hhcccceeEcc----CCCCccc-----CCcccCCCCCCCEEEcccCc--CCCC
Q 036320 221 GSNNSASVLVIANNKFGGCLPPSVAN-LANSIEELLLI----NTSISGC-----LPPEVGYLYKLRVLDVSLNK--LVGP 288 (404)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~~~p~~l~~-l~~~L~~L~l~----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~ 288 (404)
..+++|++|+++.|.+++..+..+.. ++ +|++|+++ .|.+++. ++..+.++++|++|++++|. +++.
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 34677777777777777655666655 44 78888885 5556642 23335567888888887533 5544
Q ss_pred Cchhcc-CCCCCCEeeccCCcCccc-CchhccCCCCCcEEeccCCcCcccC-CCCCCcCCCceeeecCCCCCCCCCC
Q 036320 289 IPYSIA-GLAHLELLNLAHNMMSGI-VPEGVCLLPNLSNFTFSYNFFCEEE-GICNNLTSKGIAYDDRWNCFPEKPF 362 (404)
Q Consensus 289 ~p~~l~-~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~-~~~~~l~~~~~~l~l~~N~l~~~~~ 362 (404)
.+..+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++.. +........+++|++++|++++...
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 444443 478899999999999863 4566688899999999999987642 2211111234459999999987654
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=2.6e-20 Score=188.51 Aligned_cols=198 Identities=17% Similarity=0.112 Sum_probs=137.5
Q ss_pred CCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCccee
Q 036320 150 SNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVL 229 (404)
Q Consensus 150 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 229 (404)
..++.|+.|+|++|+++ .+|..++++++|+.|++++|.....++.. +. .+...+..|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----l~-----~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----MR-----ALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----HH-----HHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----HH-----hcccccCCHHHHHHHHhcccC
Confidence 44566666666666665 55666666666666666544310001100 00 111344556666667777777
Q ss_pred c-cccCcCCCCChh------HHHhh-hcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCE
Q 036320 230 V-IANNKFGGCLPP------SVANL-ANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLEL 301 (404)
Q Consensus 230 ~-l~~n~l~~~~p~------~l~~l-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 301 (404)
+ ++.|.+. .++. .+..+ ...|+.|++++|.+++ +|. +..+++|+.|+|++|+|+ .+|..+..+++|+.
T Consensus 415 ~~l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 415 DPMRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490 (567)
T ss_dssp CGGGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred cchhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence 6 5555433 1111 11111 1168999999999996 666 999999999999999999 78999999999999
Q ss_pred eeccCCcCcccCchhccCCCCCcEEeccCCcCcccC-CCCCCcCCCceeeecCCCCCCCCCCCC
Q 036320 302 LNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEE-GICNNLTSKGIAYDDRWNCFPEKPFQR 364 (404)
Q Consensus 302 L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~-~~~~~l~~~~~~l~l~~N~l~~~~~~~ 364 (404)
|+|++|+|++ +| .+..+++|+.|+|++|.|++.. |........++.|++++|.|++.|...
T Consensus 491 L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 491 LQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp EECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred EECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999996 67 8999999999999999999986 643333334556999999999987643
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=9.4e-18 Score=146.06 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=60.1
Q ss_pred CcceeccccCcCCCCChh-HHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEee
Q 036320 225 SASVLVIANNKFGGCLPP-SVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLN 303 (404)
Q Consensus 225 ~L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 303 (404)
++++|++++|++++..+. .+..+. +|++|++++|++++..|..+.++++|++|+|++|+|++..+..+.++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 444444444444432222 133444 555555555555555555555555555555555555555555555555666666
Q ss_pred ccCCcCcccCchhccCCCCCcEEeccCCcCcccC
Q 036320 304 LAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 304 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
|++|+|++..|..+..+++|++|++++|.+++..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 6666665555555555666666666666655443
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1e-19 Score=185.41 Aligned_cols=252 Identities=10% Similarity=0.048 Sum_probs=131.3
Q ss_pred CcEEEEEcCCCCCCcc----CcccccCCCCCCEEECCCCcCCCC----CcccCCCCCCCCEEeCcCcccCCCCCcccCCC
Q 036320 105 QVVSGIDLNNADIAGF----LPDELGLLSDLALIHLNSNRFCGI----VPQTLSNLTLLYELDLSNNRFVGPFPNVVLSL 176 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 176 (404)
+++++|+|++|.+++. ++..+.++++|++|++++|.+++. ++..+.++++|++|++++|.+.+ ++..+.++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 4566666666665543 223344556666666666666522 22233456666666666666543 33333333
Q ss_pred CCCCEEEcc---------------------------cccCCCCCChhhhcCC-CceEEccCCccCCCCc-ccccCCCCcc
Q 036320 177 PMLNYLDIR---------------------------FNEFEGPLPPELFNKK-LDAIFVNNNRFTSMIP-QNFGSNNSAS 227 (404)
Q Consensus 177 ~~L~~L~L~---------------------------~n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~-~~~~~l~~L~ 227 (404)
++|++|+++ ++.. +.+|..+.... |++|++++|.+++... ..+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 333333333 2211 13344343333 7888888777654322 2234445555
Q ss_pred eecc------------------------c-----------cCcCCCCChhH-HHhhhcccceeEccCCCCcccCCcccCC
Q 036320 228 VLVI------------------------A-----------NNKFGGCLPPS-VANLANSIEELLLINTSISGCLPPEVGY 271 (404)
Q Consensus 228 ~L~l------------------------~-----------~n~l~~~~p~~-l~~l~~~L~~L~l~~n~l~~~~p~~~~~ 271 (404)
+|++ + .|.+++..... ...++ +|++|+++.|++++..+..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ-ELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT-TCSEEEEEESCCCHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc-cCeEEEeecCCccHHHHHHHHh
Confidence 5554 4 13333211111 12233 5555555555555444444433
Q ss_pred -CCCCCEEEcc----cCcCCCC-----CchhccCCCCCCEeeccCC--cCcccCchhcc-CCCCCcEEeccCCcCccc-C
Q 036320 272 -LYKLRVLDVS----LNKLVGP-----IPYSIAGLAHLELLNLAHN--MMSGIVPEGVC-LLPNLSNFTFSYNFFCEE-E 337 (404)
Q Consensus 272 -l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~L~~N--~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~-~ 337 (404)
+++|++|+++ .|.+++. ++..+.++++|++|++++| .+++..+..+. .+++|+.|++++|.+++. +
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 6667777774 5566642 2333555777777777643 35555444443 478899999999988763 2
Q ss_pred CCCCCcCCCceeeecCCCCCCC
Q 036320 338 GICNNLTSKGIAYDDRWNCFPE 359 (404)
Q Consensus 338 ~~~~~l~~~~~~l~l~~N~l~~ 359 (404)
+....--..+++|++++|.|++
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHhcCcccCeeeccCCCCcH
Confidence 2111111234449999998764
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.5e-17 Score=143.32 Aligned_cols=132 Identities=20% Similarity=0.297 Sum_probs=108.6
Q ss_pred EEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcc-cCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEccc
Q 036320 108 SGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQ-TLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRF 186 (404)
Q Consensus 108 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 186 (404)
+.+++++++++. +|..+. .+|++|++++|.+++..+. .|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 356777888855 565554 3899999999999876664 488899999999999999988888999999999999999
Q ss_pred ccCCCCCChhhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChh
Q 036320 187 NEFEGPLPPELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPP 242 (404)
Q Consensus 187 n~l~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 242 (404)
|++++..+..+.... |++|++++|++++..|..+..+++|++|++++|.+.+..+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 999866665565544 99999999999988888899999999999999999876553
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=6.6e-17 Score=137.37 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=73.7
Q ss_pred CcEEEEEcCCCCCC-ccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 105 QVVSGIDLNNADIA-GFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 105 ~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
.+++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 45555556666666666666666644 4556666666666666666655555555566666666
Q ss_pred cccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCCh---hHHHhhhcccceeEccCCC
Q 036320 184 IRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLP---PSVANLANSIEELLLINTS 260 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~~L~~L~l~~n~ 260 (404)
+++|.++ .++ .+..+..+++|++|++++|.+++..+ ..+..++ +|++|++++|.
T Consensus 102 Ls~N~l~-~~~---------------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLK-DIS---------------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-QLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCC-SSG---------------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-SCCEETTEETT
T ss_pred ccCCccC-cch---------------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-cCcEecCCCCC
Confidence 6666665 222 11334445555555555555553222 2344444 55555555555
Q ss_pred Cc
Q 036320 261 IS 262 (404)
Q Consensus 261 l~ 262 (404)
+.
T Consensus 159 ~~ 160 (168)
T 2ell_A 159 DQ 160 (168)
T ss_dssp SC
T ss_pred hh
Confidence 44
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=3.5e-16 Score=132.86 Aligned_cols=132 Identities=17% Similarity=0.123 Sum_probs=68.7
Q ss_pred CCCCEEeCcCcccC-CCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceecc
Q 036320 153 TLLYELDLSNNRFV-GPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVI 231 (404)
Q Consensus 153 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 231 (404)
++|++|++++|+++ +.+|..+..+++|++|++++|.++ +. ..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-----------------------~~--~~~~~l~~L~~L~L 78 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----------------------SV--SNLPKLPKLKKLEL 78 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-----------------------CC--SSCCCCSSCCEEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-----------------------Ch--hhhccCCCCCEEEC
Confidence 44555555555554 344444444555555555554444 22 33555666666666
Q ss_pred ccCcCCCCChhHHHhhhcccceeEccCCCCcccC-CcccCCCCCCCEEEcccCcCCCCCc---hhccCCCCCCEeeccCC
Q 036320 232 ANNKFGGCLPPSVANLANSIEELLLINTSISGCL-PPEVGYLYKLRVLDVSLNKLVGPIP---YSIAGLAHLELLNLAHN 307 (404)
Q Consensus 232 ~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~N 307 (404)
++|++++.+|..+..++ +|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 79 s~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 79 SENRIFGGLDMLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ESCCCCSCCCHHHHHCT-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred cCCcCchHHHHHHhhCC-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 66666654555555555 5666666666655321 1445555555555555555553322 24445555555555555
Q ss_pred cCc
Q 036320 308 MMS 310 (404)
Q Consensus 308 ~l~ 310 (404)
.+.
T Consensus 158 ~~~ 160 (168)
T 2ell_A 158 EDQ 160 (168)
T ss_dssp TSC
T ss_pred Chh
Confidence 544
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=135.70 Aligned_cols=128 Identities=23% Similarity=0.274 Sum_probs=90.0
Q ss_pred ceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEccc
Q 036320 203 DAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSL 282 (404)
Q Consensus 203 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~ 282 (404)
+++++++|.++. +|..+. ++|++|++++|+++ .+|..+..+. +|++|++++|.|++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 345555555543 333222 46677777777776 5666666666 777777777777766667777788888888888
Q ss_pred CcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcc
Q 036320 283 NKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 283 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 335 (404)
|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88887666677778888888888888876555667777888888888887754
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.4e-16 Score=131.15 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=71.0
Q ss_pred CcEEEEEcCCCCCC-ccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 105 QVVSGIDLNNADIA-GFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 105 ~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45556666666665 44555555566666666666665543 4455555666666666666554555555555555555
Q ss_pred cccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCCh---hHHHhhhcccceeEcc
Q 036320 184 IRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLP---PSVANLANSIEELLLI 257 (404)
Q Consensus 184 L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~~L~~L~l~ 257 (404)
+++|.+++ ++ .+..+..+++|++|++++|.+++..+ ..+..++ +|++|+++
T Consensus 95 ls~N~i~~-~~---------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKD-LS---------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY 148 (149)
T ss_dssp CTTSCCCS-HH---------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred CCCCcCCC-hH---------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence 55555542 11 22445556666666666666654333 3455555 66666554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=5.4e-16 Score=128.96 Aligned_cols=128 Identities=18% Similarity=0.115 Sum_probs=94.5
Q ss_pred CCCCEEECCCCcCC-CCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEc
Q 036320 129 SDLALIHLNSNRFC-GIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFV 207 (404)
Q Consensus 129 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l 207 (404)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~----------------- 77 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS----------------- 77 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC-----------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc-----------------
Confidence 56677777777776 56666666777777777777777654 45666666666666666665
Q ss_pred cCCccCCCCcccccCCCCcceeccccCcCCCC-ChhHHHhhhcccceeEccCCCCcccCC---cccCCCCCCCEEEccc
Q 036320 208 NNNRFTSMIPQNFGSNNSASVLVIANNKFGGC-LPPSVANLANSIEELLLINTSISGCLP---PEVGYLYKLRVLDVSL 282 (404)
Q Consensus 208 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~Ls~ 282 (404)
+.+|..+..+++|++|++++|++++. .+..+..++ +|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 78 ------~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 78 ------GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE-NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ------SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT-TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ------chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC-CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 33455566678899999999998852 347788888 99999999999997665 5788999999999874
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=9.7e-16 Score=131.31 Aligned_cols=132 Identities=22% Similarity=0.171 Sum_probs=84.0
Q ss_pred ceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEccc
Q 036320 203 DAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSL 282 (404)
Q Consensus 203 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~ 282 (404)
+.+++++|+++. +|..+ .++|++|++++|++++..+..+..+. +|++|++++|.+++..+..+..+++|++|+|++
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 444455554443 22221 24566666666666643333445555 677777777777655555567777777777777
Q ss_pred CcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 283 NKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 283 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77776555566777777777777777775555556777777778888777776554
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.6e-15 Score=130.03 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=90.5
Q ss_pred CEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCC
Q 036320 180 NYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINT 259 (404)
Q Consensus 180 ~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n 259 (404)
+.+++++|+++ .+|..+. ..+++|++++|++++..+..+..+++|++|++++|++++..+..+..+. +|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCC
Confidence 34444444444 3443222 2355555555555555555566777777777777777754444456666 7888888888
Q ss_pred CCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCc
Q 036320 260 SISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVP 314 (404)
Q Consensus 260 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 314 (404)
.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8887666677888888888998888886655566778889999999998886554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=131.67 Aligned_cols=127 Identities=17% Similarity=0.292 Sum_probs=84.7
Q ss_pred EEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCC
Q 036320 181 YLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTS 260 (404)
Q Consensus 181 ~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~ 260 (404)
++++++|.++ .+|..+. ..+++|++++|+++ .+|..|..+++|++|++++|+|++..+..+..+. +|++|+|++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECCCCc
Confidence 3444444444 3443321 23555555555554 3445566667777777777777755555666666 77777777787
Q ss_pred CcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcc
Q 036320 261 ISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSG 311 (404)
Q Consensus 261 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 311 (404)
+++..+..|.++++|++|+|++|+|++..+..+..+++|+.|++++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 777777778888888888888888886555567788888888888888764
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=2.6e-16 Score=148.72 Aligned_cols=229 Identities=13% Similarity=0.011 Sum_probs=135.4
Q ss_pred CCcEEEEEcCCCCCC--ccCcccccCCCCCCEEECCCCcCCCCCcccCCC--------CCCCCEEeCcCcccCCCCCccc
Q 036320 104 IQVVSGIDLNNADIA--GFLPDELGLLSDLALIHLNSNRFCGIVPQTLSN--------LTLLYELDLSNNRFVGPFPNVV 173 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~l 173 (404)
+++++.|||++|++. ......+ +.++.+.+..|.+. ...|.+ +++|++|+|.+ .++.+-..+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 467899999999987 2111111 11333333333222 123444 55555555555 5554444455
Q ss_pred CCCCCCCEEEcccccCCCCCChhhhcCC--CceEEccCCcc----C----------------------CCCcccc----c
Q 036320 174 LSLPMLNYLDIRFNEFEGPLPPELFNKK--LDAIFVNNNRF----T----------------------SMIPQNF----G 221 (404)
Q Consensus 174 ~~l~~L~~L~L~~n~l~~~~p~~~~~~~--L~~L~l~~n~l----~----------------------~~~~~~~----~ 221 (404)
.++++|+.+++.+|.+. .++...+... +.++....+.. . +.++..+ .
T Consensus 121 ~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 55555555555555554 3333333322 22222222100 0 0011100 1
Q ss_pred CCCCcceeccccCcCCCCChhHHHh-hhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCC
Q 036320 222 SNNSASVLVIANNKFGGCLPPSVAN-LANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLE 300 (404)
Q Consensus 222 ~l~~L~~L~l~~n~l~~~~p~~l~~-l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 300 (404)
...+++.+.+.++-.. .....+.. +. +|+.+++++|+++......|.++++|+.|+|++| ++......|.++.+|+
T Consensus 200 ~~~~~~~l~~~~~l~~-~~~~~l~~~~~-~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDN-ADFKLIRDYMP-NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CGGGCSEEEEEECCCH-HHHHHHHHHCT-TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CccccceEEEeeeecH-HHHHHHHHhcC-CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 2344555555554221 12222333 34 8999999999898777788999999999999988 7756667888999999
Q ss_pred -EeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcC
Q 036320 301 -LLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLT 344 (404)
Q Consensus 301 -~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~ 344 (404)
.+++.+ .++.+.+..|.++++|+.+++++|.++.+.+..+.-.
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 999988 7776777889999999999999999988877554433
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=2.4e-17 Score=167.88 Aligned_cols=205 Identities=15% Similarity=-0.002 Sum_probs=121.4
Q ss_pred CCCCCCEEeCcCcccCCCC-CcccCCCCCCCEEEcccccCCCCCChhhh-c-CCCceEEcc---------CCccCCCCcc
Q 036320 151 NLTLLYELDLSNNRFVGPF-PNVVLSLPMLNYLDIRFNEFEGPLPPELF-N-KKLDAIFVN---------NNRFTSMIPQ 218 (404)
Q Consensus 151 ~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~-~~L~~L~l~---------~n~l~~~~~~ 218 (404)
.+++|++|++++|.+++.. ...+..+++|++|++++| ++......+. . ..|++|++. .+.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 3456666666666655321 122456667777777666 3211111111 1 337777773 2344432222
Q ss_pred cc-cCCCCcceeccccCcCCCCChhHHHh-hhcccceeEcc--C----CCCccc-----CCcccCCCCCCCEEEcccCcC
Q 036320 219 NF-GSNNSASVLVIANNKFGGCLPPSVAN-LANSIEELLLI--N----TSISGC-----LPPEVGYLYKLRVLDVSLNKL 285 (404)
Q Consensus 219 ~~-~~l~~L~~L~l~~n~l~~~~p~~l~~-l~~~L~~L~l~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l 285 (404)
.+ ..+++|++|.+..|.+++.....+.. ++ +|+.|+++ + +.+++. ++..+..+++|++|+|++ .+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRP-NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT-TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC-CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 22 23677888877777777555555553 44 78888888 3 445521 122255677888888876 56
Q ss_pred CCCCchhccC-CCCCCEeeccCCcCcccCchhc-cCCCCCcEEeccCCcCcccCCC-CCCcCCCceeeecCCCCCC
Q 036320 286 VGPIPYSIAG-LAHLELLNLAHNMMSGIVPEGV-CLLPNLSNFTFSYNFFCEEEGI-CNNLTSKGIAYDDRWNCFP 358 (404)
Q Consensus 286 ~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~~~~~~-~~~l~~~~~~l~l~~N~l~ 358 (404)
++..+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... ....-..++.|++++|.++
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6444445544 7889999999998876655444 5678899999999988654321 1111123444889888874
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=7.6e-17 Score=164.19 Aligned_cols=153 Identities=10% Similarity=0.032 Sum_probs=86.0
Q ss_pred CCceEEccCCccCCCCc-ccccCCCCcceeccccCcCCCCChhHHH-hhhcccceeEc----------------------
Q 036320 201 KLDAIFVNNNRFTSMIP-QNFGSNNSASVLVIANNKFGGCLPPSVA-NLANSIEELLL---------------------- 256 (404)
Q Consensus 201 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~l---------------------- 256 (404)
.|++|++++|.+++... ..+..+++|++|++++| +.+.....+. .++ +|++|++
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~-~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK-DLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT-TCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC-CCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 48888888887654322 22345566666666655 2211111111 223 4555544
Q ss_pred ------------cCCCCcccCCcccC-CCCCCCEEEcc--c----CcCCCCC-----chhccCCCCCCEeeccCCcCccc
Q 036320 257 ------------INTSISGCLPPEVG-YLYKLRVLDVS--L----NKLVGPI-----PYSIAGLAHLELLNLAHNMMSGI 312 (404)
Q Consensus 257 ------------~~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~ 312 (404)
..|.+++.....+. .+++|+.|+++ + +.+++.. +..+..+++|+.|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 44444433222332 36677777777 3 4454211 12245567777777766 56555
Q ss_pred CchhccC-CCCCcEEeccCCcCcccCC-----CCCCcCCCceeeecCCCCCCCC
Q 036320 313 VPEGVCL-LPNLSNFTFSYNFFCEEEG-----ICNNLTSKGIAYDDRWNCFPEK 360 (404)
Q Consensus 313 ~p~~l~~-l~~L~~L~l~~N~l~~~~~-----~~~~l~~~~~~l~l~~N~l~~~ 360 (404)
....+.. +++|+.|++++|.+++... .+.. ++.|++++|.+++.
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~----L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS----LRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT----CCEEEEESCSCCHH
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC----cCEEECcCCCCcHH
Confidence 5555554 7889999999999876433 1333 34499999998643
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=7.1e-15 Score=138.77 Aligned_cols=251 Identities=10% Similarity=0.016 Sum_probs=168.6
Q ss_pred CCcEEEEEcCCCCCCccCcccccC-CCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCC-------
Q 036320 104 IQVVSGIDLNNADIAGFLPDELGL-LSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLS------- 175 (404)
Q Consensus 104 ~~~l~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------- 175 (404)
..+++.|+++++ +...--..+.. +++|++|+|++|++.. ....-+.++.++.+++..|.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCccccccccccccccccccC---HHHhccccccccc
Confidence 346777888764 22111122333 7889999999999981 1111122233556666666443 345667
Q ss_pred -CCCCCEEEcccccCCCCCChhhhc-CC-CceEEccCCccCCCCcccccCCCCcceeccccCcC-------C--------
Q 036320 176 -LPMLNYLDIRFNEFEGPLPPELFN-KK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKF-------G-------- 237 (404)
Q Consensus 176 -l~~L~~L~L~~n~l~~~~p~~~~~-~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------~-------- 237 (404)
+++|+.|+|.+ .++ .++...+. .. |+.|++.+|.+....+..|..+.++..+.+..+.. .
T Consensus 99 g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 99999999999 787 56665544 44 99999999999877778888887777776655221 0
Q ss_pred -----------CCChhHHHhh---hcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEee
Q 036320 238 -----------GCLPPSVANL---ANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLN 303 (404)
Q Consensus 238 -----------~~~p~~l~~l---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 303 (404)
+.++..+... ..+++.+.+.++-...........+++|+.|+|++|+++......|.++.+|++|+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 1122222211 12455555555422211111112378999999999999966667899999999999
Q ss_pred ccCCcCcccCchhccCCCCCc-EEeccCCcCcccCCCCCCcCCCceeeecCCCCCCCCCCC
Q 036320 304 LAHNMMSGIVPEGVCLLPNLS-NFTFSYNFFCEEEGICNNLTSKGIAYDDRWNCFPEKPFQ 363 (404)
Q Consensus 304 L~~N~l~~~~p~~l~~l~~L~-~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~~~ 363 (404)
+.+| +..+.+..|.++++|+ .+++.+ .++.+.+..+.--..++.+++.+|.++.++..
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 9998 7767788999999999 999998 78777776555555566699999999887643
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=3.8e-17 Score=142.86 Aligned_cols=155 Identities=23% Similarity=0.203 Sum_probs=88.4
Q ss_pred CCCCCCCEEeCcCcccCCCCCc------ccCCCCCCCEEEcccccCCCCCChhhhcCCCceEEccCCccCCCCcccccCC
Q 036320 150 SNLTLLYELDLSNNRFVGPFPN------VVLSLPMLNYLDIRFNEFEGPLPPELFNKKLDAIFVNNNRFTSMIPQNFGSN 223 (404)
Q Consensus 150 ~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 223 (404)
.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~------------------------~~~~l 69 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS------------------------SLSGM 69 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC------------------------CHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc------------------------ccccC
Confidence 3445566666666666655554 55555556666665555552 33 34444
Q ss_pred CCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCc-hhccCCCCCCEe
Q 036320 224 NSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIP-YSIAGLAHLELL 302 (404)
Q Consensus 224 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L 302 (404)
++|++|++++|.++ .+|..+..++ +|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|
T Consensus 70 ~~L~~L~l~~n~l~-~l~~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 70 ENLRILSLGRNLIK-KIENLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp TTCCEEEEEEEEEC-SCSSHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCCCEEECCCCCcc-cccchhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 55555555555555 4555454444 56666666666654 23 35556666666666666663221 356666677777
Q ss_pred eccCCcCcccCch----------hccCCCCCcEEeccCCcCcc
Q 036320 303 NLAHNMMSGIVPE----------GVCLLPNLSNFTFSYNFFCE 335 (404)
Q Consensus 303 ~L~~N~l~~~~p~----------~l~~l~~L~~L~l~~N~l~~ 335 (404)
++++|.+.+.+|. .+..+++|+.|| +|.++.
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 7777766655443 256677777765 555553
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=7.1e-15 Score=125.81 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=61.3
Q ss_pred cCCCCCCCEEEcccccCCCCCChhhhcC-CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhccc
Q 036320 173 VLSLPMLNYLDIRFNEFEGPLPPELFNK-KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSI 251 (404)
Q Consensus 173 l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L 251 (404)
+.++.+|++|++++|+++ .++...... .|++|++++|.+++. ..+..+++|++|++++|++++..+..+..++ +|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC-CC
Confidence 334455555555555554 333322222 355555555555443 3455566666666666666632222224444 55
Q ss_pred ceeEccCCCCcccCCc--ccCCCCCCCEEEcccCcCCCCCchh----ccCCCCCCEeeccCCcC
Q 036320 252 EELLLINTSISGCLPP--EVGYLYKLRVLDVSLNKLVGPIPYS----IAGLAHLELLNLAHNMM 309 (404)
Q Consensus 252 ~~L~l~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~N~l 309 (404)
++|++++|.+. .+|. .+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555554 2232 3444444555555555444 22321 34444444444444443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=5.7e-17 Score=141.74 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=102.4
Q ss_pred ccCCCCCCEEECCCCcCCCCCcc------cCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhh
Q 036320 125 LGLLSDLALIHLNSNRFCGIVPQ------TLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELF 198 (404)
Q Consensus 125 l~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 198 (404)
+.....++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45567788888888888887776 88999999999999999996 66 8899999999999999998 6666554
Q ss_pred cC-CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCC-cccCCCCCCC
Q 036320 199 NK-KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLP-PEVGYLYKLR 276 (404)
Q Consensus 199 ~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~ 276 (404)
.. .|++|++++|++++ +| .+..+. +|++|++++|.+++..+ ..+..+++|+
T Consensus 91 ~~~~L~~L~L~~N~l~~-------------------------l~-~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-------------------------LS-GIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHHHCSEEEEEEEECCC-------------------------HH-HHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred cCCcCCEEECcCCcCCc-------------------------CC-ccccCC-CCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 42 25666655555554 22 344444 55555555555543211 2455566666
Q ss_pred EEEcccCcCCCCCch----------hccCCCCCCEeeccCCcCc
Q 036320 277 VLDVSLNKLVGPIPY----------SIAGLAHLELLNLAHNMMS 310 (404)
Q Consensus 277 ~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~L~~N~l~ 310 (404)
+|++++|.+++..|. .+..+++|+.|+ +|.++
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666666666543332 255666777665 45544
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.4e-14 Score=123.93 Aligned_cols=104 Identities=23% Similarity=0.204 Sum_probs=54.7
Q ss_pred CcEEEEEcCCCCCCccCcccccCCC-CCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEE
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLS-DLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLD 183 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 183 (404)
.+++.|++++|+++.. +. +..+. +|++|++++|.+++. ..|.++++|++|++++|++++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 4566666666666542 33 33333 666666666666643 3455666666666666666644333345566666666
Q ss_pred cccccCCCCCCh--hhhcCC-CceEEccCCccC
Q 036320 184 IRFNEFEGPLPP--ELFNKK-LDAIFVNNNRFT 213 (404)
Q Consensus 184 L~~n~l~~~~p~--~~~~~~-L~~L~l~~n~l~ 213 (404)
+++|+++ .+|. .+.... |++|++++|.++
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 6666654 3443 222222 444444444444
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=2.4e-13 Score=131.63 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=181.4
Q ss_pred CCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCCh
Q 036320 116 DIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPP 195 (404)
Q Consensus 116 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 195 (404)
+++.+-..+|.+. +|+.+.+..+ ++.....+|.+. +|+.+.+.+ .++.+...+|.++++|+.+++.+|+++ .++.
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~ 197 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPA 197 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECT
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-Eech
Confidence 3444445667774 7999999876 665666778874 799999986 677667788999999999999999998 6776
Q ss_pred hhhcCC-CceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCC
Q 036320 196 ELFNKK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYK 274 (404)
Q Consensus 196 ~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~ 274 (404)
..+... |+.+.+..+ +...-...|.++++|+.+++..+ ++ .++...+.-. +|+.+.+. +.++.....+|.++++
T Consensus 198 ~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~~-~L~~i~lp-~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 198 STFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRES-GITTVKLP-NGVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTTC-CCSEEEEE-TTCCEECTTTTTTCTT
T ss_pred hhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-CccccccccC-CccEEEeC-CCccEEChhHhhCCCC
Confidence 666544 999999854 77667788999999999999875 44 3333333335 89999994 5566677889999999
Q ss_pred CCEEEcccCcCC-----CCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCcee
Q 036320 275 LRVLDVSLNKLV-----GPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIA 349 (404)
Q Consensus 275 L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~ 349 (404)
|+.+++.+|.+. ......|.++++|+.+.+.+ .++.+....|.++.+|+.+++..| ++.+....+.-. .++.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 999999998775 34567889999999999994 577677788999999999999665 766666554444 5566
Q ss_pred eecCCCCCCCCCC
Q 036320 350 YDDRWNCFPEKPF 362 (404)
Q Consensus 350 l~l~~N~l~~~~~ 362 (404)
+++.+|.+..++.
T Consensus 350 l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 350 VKVEGTTPPQVFE 362 (401)
T ss_dssp EEECCSSCCBCCC
T ss_pred EEEcCCCCccccc
Confidence 9999998876653
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=2.5e-14 Score=121.78 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=88.0
Q ss_pred cceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeecc
Q 036320 226 ASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLA 305 (404)
Q Consensus 226 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 305 (404)
.+.+++++|.++ .+|..+. .+|++|++++|.|++..|..+.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456777777776 4665442 378888888888888778888889999999999999987666677888999999999
Q ss_pred CCcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 306 HNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 306 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
+|+|++..+..|..+++|++|+|++|.++...+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999987777778888999999999998876654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=5.3e-14 Score=120.21 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=86.7
Q ss_pred ceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccC
Q 036320 227 SVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAH 306 (404)
Q Consensus 227 ~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 306 (404)
+.+++++|+++ .+|..+. . +|++|++++|.|++..|..+.++++|++|+|++|+|++..+..+..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777776 5666543 3 788888888888887788888899999999999999866556678889999999999
Q ss_pred CcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 307 NMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 307 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
|+|++..+..|..+++|++|+|++|.+....+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99986666668888999999999998876544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3.8e-13 Score=114.37 Aligned_cols=109 Identities=15% Similarity=0.013 Sum_probs=94.1
Q ss_pred ccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEecc
Q 036320 250 SIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFS 329 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 329 (404)
..+.+++++|.++ .+|..+ .++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 5688999999999 567665 4899999999999998889999999999999999999998878888999999999999
Q ss_pred CCcCcccCCCCCCcCCCceeeecCCCCCCCCC
Q 036320 330 YNFFCEEEGICNNLTSKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 330 ~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~ 361 (404)
+|+|++..+........+++|++++|.+...+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999988864433344566999999998664
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=9.5e-13 Score=127.43 Aligned_cols=239 Identities=10% Similarity=0.035 Sum_probs=172.9
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEc
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDI 184 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 184 (404)
.+++.+++..+ ++.+-..+|.+ .+|+.+.+.. .++......|.++.+|+.+++++|+++......|. ..+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 36788888765 66666677777 4799999986 66656667899999999999999988865555665 588999999
Q ss_pred ccccCCCCCChhhhc-C-CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCc
Q 036320 185 RFNEFEGPLPPELFN-K-KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSIS 262 (404)
Q Consensus 185 ~~n~l~~~~p~~~~~-~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 262 (404)
..+ ++ .++...+. . .|+.+++..+ ++..-...|.+ .+|+.+.+. +.++..-...|..+. +|+.+.+.+|.+.
T Consensus 211 p~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~-~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 211 PVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCP-ELAEVTTYGSTFN 284 (401)
T ss_dssp CTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCT-TCCEEEEESSCCC
T ss_pred CCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCC-CCCEEEeCCcccc
Confidence 854 65 55554443 4 3999998864 55555566766 789999884 445533455666666 8999999888765
Q ss_pred -----ccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccC
Q 036320 263 -----GCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 263 -----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
......|.++++|+.++|. +.++......|.++.+|+.+.+..| ++.+....|.++ +|+.+++++|.+....
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 4566788899999999998 4577566678888999999999655 665667888888 9999999999877655
Q ss_pred CCC-CCcCCCceeeecCCCC
Q 036320 338 GIC-NNLTSKGIAYDDRWNC 356 (404)
Q Consensus 338 ~~~-~~l~~~~~~l~l~~N~ 356 (404)
+.. ..+...+..+++..+.
T Consensus 362 ~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CSSCCCSCTTCCEEEECGGG
T ss_pred cccccCCCCCccEEEeCHHH
Confidence 432 2233333345554443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6.2e-13 Score=113.54 Aligned_cols=109 Identities=13% Similarity=0.013 Sum_probs=93.0
Q ss_pred ccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEecc
Q 036320 250 SIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFS 329 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 329 (404)
.-+.+++++|++. .+|..+. ++|++|+|++|+|++..|..+.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 13 ~~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 13 DQTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3478999999997 6777663 899999999999998889999999999999999999997777778999999999999
Q ss_pred CCcCcccCCCCCCcCCCceeeecCCCCCCCCC
Q 036320 330 YNFFCEEEGICNNLTSKGIAYDDRWNCFPEKP 361 (404)
Q Consensus 330 ~N~l~~~~~~~~~l~~~~~~l~l~~N~l~~~~ 361 (404)
+|+|++.++........++.|++++|.|...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99999888763333334556999999998665
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=9.9e-15 Score=140.02 Aligned_cols=93 Identities=23% Similarity=0.251 Sum_probs=46.3
Q ss_pred CCcceeccccCcCCCC----ChhHHHhhhcccceeEccCCCCccc----CCcccCCCCCCCEEEcccCcCCCC----Cch
Q 036320 224 NSASVLVIANNKFGGC----LPPSVANLANSIEELLLINTSISGC----LPPEVGYLYKLRVLDVSLNKLVGP----IPY 291 (404)
Q Consensus 224 ~~L~~L~l~~n~l~~~----~p~~l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~ 291 (404)
++|++|+|++|.++.. ++..+...+ +|++|+|++|.|.+. +...+...++|++|+|++|.|++. +..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4555555555555421 222223333 455555555555431 233444555666666666666532 222
Q ss_pred hccCCCCCCEeeccCCcCcccCchhc
Q 036320 292 SIAGLAHLELLNLAHNMMSGIVPEGV 317 (404)
Q Consensus 292 ~l~~l~~L~~L~L~~N~l~~~~p~~l 317 (404)
.+...++|++|+|++|.|++.....+
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 33345666666666666654433333
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=5.5e-12 Score=119.67 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=79.8
Q ss_pred EcCCC-CCCccCcccccCCCCCCEEECCC-CcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEccccc
Q 036320 111 DLNNA-DIAGFLPDELGLLSDLALIHLNS-NRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNE 188 (404)
Q Consensus 111 ~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 188 (404)
+++++ ++++ +|. +..+++|++|+|++ |.|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34444 5665 676 88888899999985 88888777888889999999999999988888888889999999999999
Q ss_pred CCCCCChhhhc-CCCceEEccCCccCC
Q 036320 189 FEGPLPPELFN-KKLDAIFVNNNRFTS 214 (404)
Q Consensus 189 l~~~~p~~~~~-~~L~~L~l~~n~l~~ 214 (404)
|+ .+|...+. ..|++|++.+|.+..
T Consensus 92 l~-~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LE-SLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cc-eeCHHHcccCCceEEEeeCCCccC
Confidence 88 45544433 448888888887764
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=6.3e-12 Score=119.23 Aligned_cols=106 Identities=21% Similarity=0.149 Sum_probs=89.6
Q ss_pred ceeccccC-cCCCCChhHHHhhhcccceeEccC-CCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeec
Q 036320 227 SVLVIANN-KFGGCLPPSVANLANSIEELLLIN-TSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNL 304 (404)
Q Consensus 227 ~~L~l~~n-~l~~~~p~~l~~l~~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 304 (404)
..++++++ +++ .+|. +..+. +|++|+|++ |.|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 45678887 788 5888 77777 899999996 9999888888999999999999999999888888899999999999
Q ss_pred cCCcCcccCchhccCCCCCcEEeccCCcCccc
Q 036320 305 AHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEE 336 (404)
Q Consensus 305 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 336 (404)
++|+|++..+..+..++ |+.|+|++|.+...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999876666666665 99999999998754
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1.7e-13 Score=131.42 Aligned_cols=162 Identities=16% Similarity=0.107 Sum_probs=116.0
Q ss_pred CCCCCEEEcccccCCCCCChhhhc------CCCceEEccCCccCCCCcccc-cCCCCcceeccccCcCCCCChhHHHhh-
Q 036320 176 LPMLNYLDIRFNEFEGPLPPELFN------KKLDAIFVNNNRFTSMIPQNF-GSNNSASVLVIANNKFGGCLPPSVANL- 247 (404)
Q Consensus 176 l~~L~~L~L~~n~l~~~~p~~~~~------~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~l~~l- 247 (404)
++.|++|+|++|.++......+.. ..|++|++++|.++......+ ..+++|++|+|++|.++..-...+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999999987433233222 249999999998875433332 345688999999999875444444322
Q ss_pred ---hcccceeEccCCCCcc----cCCcccCCCCCCCEEEcccCcCCCC----CchhccCCCCCCEeeccCCcCccc----
Q 036320 248 ---ANSIEELLLINTSISG----CLPPEVGYLYKLRVLDVSLNKLVGP----IPYSIAGLAHLELLNLAHNMMSGI---- 312 (404)
Q Consensus 248 ---~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~---- 312 (404)
..+|++|+|++|.+++ .++..+...++|++|+|++|.|++. ++..+...++|++|+|++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 1379999999999875 2445557788899999999998743 245567778899999999999754
Q ss_pred CchhccCCCCCcEEeccCCcCcccC
Q 036320 313 VPEGVCLLPNLSNFTFSYNFFCEEE 337 (404)
Q Consensus 313 ~p~~l~~l~~L~~L~l~~N~l~~~~ 337 (404)
+...+...++|++|||++|.|++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHH
Confidence 3445556788999999999987643
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=7.1e-11 Score=112.42 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=37.8
Q ss_pred CCCCCCEEEcccCcCCCCCchhcc---CCCCCCEeeccCCcCcccC----chhccCCCCCcEEeccCCcCccc
Q 036320 271 YLYKLRVLDVSLNKLVGPIPYSIA---GLAHLELLNLAHNMMSGIV----PEGVCLLPNLSNFTFSYNFFCEE 336 (404)
Q Consensus 271 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~l~~N~l~~~ 336 (404)
.+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.|.+.. +..+..+++|+.|++++|.|++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 356666666666666533222222 3566777777777766532 23333456777777777766643
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=3.6e-10 Score=107.52 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=50.4
Q ss_pred ccceeEccCCCCcccCCccc---CCCCCCCEEEcccCcCCCCC----chhccCCCCCCEeeccCCcCcccCchhccC-CC
Q 036320 250 SIEELLLINTSISGCLPPEV---GYLYKLRVLDVSLNKLVGPI----PYSIAGLAHLELLNLAHNMMSGIVPEGVCL-LP 321 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-l~ 321 (404)
+|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+++.. +..+..+++|+.|++++|.|++..-..+.. +
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al- 331 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL- 331 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence 66666666666653222222 23677888888888877532 333345678888888888887554444433 2
Q ss_pred CCcEEeccCCc
Q 036320 322 NLSNFTFSYNF 332 (404)
Q Consensus 322 ~L~~L~l~~N~ 332 (404)
...++++.|+
T Consensus 332 -g~~~~~~~~~ 341 (362)
T 2ra8_A 332 -PMKIDVSDSQ 341 (362)
T ss_dssp -CSEEECCSBC
T ss_pred -CCEEEecCCc
Confidence 3557888776
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.83 E-value=9.4e-08 Score=92.06 Aligned_cols=134 Identities=16% Similarity=0.054 Sum_probs=82.2
Q ss_pred CCCCCCCCCCcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcc-----------
Q 036320 96 APPPYDHKIQVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNR----------- 164 (404)
Q Consensus 96 ~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~----------- 164 (404)
.....+....+++.+.+.. .++.+-..+|.++++|+.+++..+ ++......|.++..|+.+.+..+-
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecc
Confidence 3444566677899999974 466666678999999999999755 553445567777777766654321
Q ss_pred ----------cCCCCCcccCCCCCCCEEEcccccCCCCCChhhhc-CC-CceEEccCCccCCCCcccccCCCCcceeccc
Q 036320 165 ----------FVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFN-KK-LDAIFVNNNRFTSMIPQNFGSNNSASVLVIA 232 (404)
Q Consensus 165 ----------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (404)
+......+|.++++|+.+.+..+. . .++...+. .. |+.+.+..+ +.......|.++..|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 011122456677788888876543 2 34443333 22 777777654 443344556666666666655
Q ss_pred cC
Q 036320 233 NN 234 (404)
Q Consensus 233 ~n 234 (404)
.+
T Consensus 217 ~~ 218 (394)
T 4fs7_A 217 NS 218 (394)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.76 E-value=1.2e-07 Score=91.39 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCc---CCCCCcccCCCCCCCCEEeC
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNR---FCGIVPQTLSNLTLLYELDL 160 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~L 160 (404)
.++.+.+..+ ++.+-..+|.++++|+.+.+..|. ++..-..+|.++.+|+.+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~ 121 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPI 121 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGG
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeecc
Confidence 3666666542 555445567777777777665442 33222334444444444443
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.67 E-value=2.4e-07 Score=89.22 Aligned_cols=204 Identities=12% Similarity=0.064 Sum_probs=116.2
Q ss_pred cccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCCCCCChhhhc-C
Q 036320 122 PDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFEGPLPPELFN-K 200 (404)
Q Consensus 122 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~ 200 (404)
..+|.++++|+.+.+.++. .......|.++.+|+.+++..+ ++......|.++..|+.+.+..+... +....+. .
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 4568888899999987654 3244567888888998888765 44455567788888888877665432 2222222 3
Q ss_pred CCceEEccCCccCCCCcccccCCCCcceeccccCcCCCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEc
Q 036320 201 KLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKFGGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDV 280 (404)
Q Consensus 201 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 280 (404)
.|+.+.+..+ ++..-...+..+..++.+.+..+... .....+.... .++.+....+.+. ...+..+.+|+.+.+
T Consensus 231 ~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~-~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 231 GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS-GLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT-TCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccc-ccceeccCceeec---ccccccccccccccc
Confidence 3777766533 22233345666677777776655332 2222333333 5555555443322 234555666666666
Q ss_pred ccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEeccCCcCcccCC
Q 036320 281 SLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFSYNFFCEEEG 338 (404)
Q Consensus 281 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 338 (404)
..+ ++......|.++.+|+.+++..+ ++.+....|.++.+|+.+++..| ++.+..
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence 543 43333445566666666666533 44344555666666666666554 444433
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=3.9e-09 Score=90.67 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=62.1
Q ss_pred ccCCCCcceeccccC-cCCCC----ChhHHHhhhcccceeEccCCCCccc----CCcccCCCCCCCEEEcccCcCCCC--
Q 036320 220 FGSNNSASVLVIANN-KFGGC----LPPSVANLANSIEELLLINTSISGC----LPPEVGYLYKLRVLDVSLNKLVGP-- 288 (404)
Q Consensus 220 ~~~l~~L~~L~l~~n-~l~~~----~p~~l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-- 288 (404)
+...+.|++|+|++| .+... +...+.... +|++|+|++|.|.+. +...+...++|++|+|++|.|++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 344455555555555 55422 112222222 555666666655431 223344456677777777776632
Q ss_pred --CchhccCCCCCCEeec--cCCcCccc----CchhccCCCCCcEEeccCCcCc
Q 036320 289 --IPYSIAGLAHLELLNL--AHNMMSGI----VPEGVCLLPNLSNFTFSYNFFC 334 (404)
Q Consensus 289 --~p~~l~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~ 334 (404)
+...+...++|++|+| ++|.|... +.+.+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344555667777777 66777643 2334445567777777777664
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.57 E-value=1.6e-06 Score=83.44 Aligned_cols=107 Identities=8% Similarity=0.075 Sum_probs=60.9
Q ss_pred CCCCCCCcEEEEEcCCCC---CCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCC
Q 036320 99 PYDHKIQVVSGIDLNNAD---IAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLS 175 (404)
Q Consensus 99 ~~~~~~~~l~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 175 (404)
..+....+|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|.+
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~ 158 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSY 158 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceec
Confidence 344455667777776543 44444456777777777766544 33334456777777777777643 33244456777
Q ss_pred CCCCCEEEcccccCCCCCChhhhc-CCCceEEccC
Q 036320 176 LPMLNYLDIRFNEFEGPLPPELFN-KKLDAIFVNN 209 (404)
Q Consensus 176 l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~ 209 (404)
+.+|+.+.+..+ ++ .+....+. ..|+.+.+..
T Consensus 159 c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 159 CYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp CTTCCEEECCTT-CC-EECTTTTTTCCCSEEEECT
T ss_pred ccccccccccce-ee-EeccccccccceeEEEECC
Confidence 777777777654 33 23333332 2366665543
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=3.8e-08 Score=89.13 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=41.1
Q ss_pred ccceeEccCCCCcc--cCCcccCCCCCCCEEEcccCcCCCCCchhccCCC--CCCEeeccCCcCcccCc-------hhcc
Q 036320 250 SIEELLLINTSISG--CLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLA--HLELLNLAHNMMSGIVP-------EGVC 318 (404)
Q Consensus 250 ~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p-------~~l~ 318 (404)
+|+.|+|++|+|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+| ..+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 56666666666664 2334444566666666666666643 2222222 66666666666655443 2244
Q ss_pred CCCCCcEEe
Q 036320 319 LLPNLSNFT 327 (404)
Q Consensus 319 ~l~~L~~L~ 327 (404)
.+++|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 556666554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=5.4e-08 Score=83.47 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=37.7
Q ss_pred cccccCCCCCCEEECCCC-cCCCC----CcccCCCCCCCCEEeCcCcccCCC----CCcccCCCCCCCEEEcccccCC
Q 036320 122 PDELGLLSDLALIHLNSN-RFCGI----VPQTLSNLTLLYELDLSNNRFVGP----FPNVVLSLPMLNYLDIRFNEFE 190 (404)
Q Consensus 122 p~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 190 (404)
...+...+.|++|+|++| .++.. +...+...++|++|+|++|.+... +...+...++|++|+|++|.|+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 344556677777777776 66532 223444556666666666666532 2223334455555555555554
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.31 E-value=4.2e-05 Score=72.85 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=49.9
Q ss_pred ccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcCcccCchhccCCCCCcEEecc
Q 036320 250 SIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMMSGIVPEGVCLLPNLSNFTFS 329 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 329 (404)
.|+.+.+..+ ++..-...+.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++.+....|.++.+|+.++|.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 5666666554 44344455666666776666543 332334456666777777777666665555666677777777775
Q ss_pred CCcCccc
Q 036320 330 YNFFCEE 336 (404)
Q Consensus 330 ~N~l~~~ 336 (404)
.+ ++.+
T Consensus 319 ~~-l~~I 324 (379)
T 4h09_A 319 TA-LKTI 324 (379)
T ss_dssp TT-CCEE
T ss_pred cc-ccEE
Confidence 43 4433
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=2.4e-07 Score=83.87 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=58.3
Q ss_pred cCCCCcceeccccCcCCC--CChhHHHhhhcccceeEccCCCCcccCCcccCCCC--CCCEEEcccCcCCCCCc------
Q 036320 221 GSNNSASVLVIANNKFGG--CLPPSVANLANSIEELLLINTSISGCLPPEVGYLY--KLRVLDVSLNKLVGPIP------ 290 (404)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p------ 290 (404)
..+++|+.|+|++|+|++ .++..+..++ +|+.|+|++|.|++. ..+..++ +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 456778888888888875 3456666777 888888888888864 2233333 89999999999986555
Q ss_pred -hhccCCCCCCEee
Q 036320 291 -YSIAGLAHLELLN 303 (404)
Q Consensus 291 -~~l~~l~~L~~L~ 303 (404)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2366788888876
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=0.00011 Score=70.00 Aligned_cols=238 Identities=9% Similarity=0.004 Sum_probs=129.2
Q ss_pred cEEEEEcCCCCCCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcc
Q 036320 106 VVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIR 185 (404)
Q Consensus 106 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 185 (404)
+++.+.+.. +++.+-..+|.++.+|+.+.|..+ ++.+-..+|.++ +|+.+.+..+ ++.....+|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 455555543 344444556777777777777543 443444556655 4666655432 33233334443 356666665
Q ss_pred cccCCCCCChhhh-cCCCceEEccCCccCCCCcccccCCCCcceeccccCcC----------------------------
Q 036320 186 FNEFEGPLPPELF-NKKLDAIFVNNNRFTSMIPQNFGSNNSASVLVIANNKF---------------------------- 236 (404)
Q Consensus 186 ~n~l~~~~p~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------------------- 236 (404)
.+. + .+....+ ...++.+.+..+ ++..-...+..+.+++.+.+..+..
T Consensus 122 ~~~-~-~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GAT-T-EIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TTC-C-EECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Ccc-c-cccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 432 1 1222222 122333333221 1112222233333333333222111
Q ss_pred -------CCCChhHHHhhhcccceeEccCCCCcccCCcccCCCCCCCEEEcccCcCCCCCchhccCCCCCCEeeccCCcC
Q 036320 237 -------GGCLPPSVANLANSIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNKLVGPIPYSIAGLAHLELLNLAHNMM 309 (404)
Q Consensus 237 -------~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 309 (404)
.......+.... +|+.+.+..+ +.......+.++..|+.+.+..+ ++......+.++.+|+.+.+..+ +
T Consensus 199 ~~~~~~~~~i~~~~f~~~~-~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 199 FTIPSTVKTVTAYGFSYGK-NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp EECCTTCCEECTTTTTTCS-SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C
T ss_pred cccccceeEEeeccccccc-ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c
Confidence 101122222333 5666666544 33345567778889999998776 55455667888899999998654 5
Q ss_pred cccCchhccCCCCCcEEeccCCcCcccCCCCCCcCCCceeeecCCC
Q 036320 310 SGIVPEGVCLLPNLSNFTFSYNFFCEEEGICNNLTSKGIAYDDRWN 355 (404)
Q Consensus 310 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~~~~~l~l~~N 355 (404)
.......|..+.+|+.+++.++.++.+....+.--..++.+++..+
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 5455678889999999999999888776654443333444777543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=2.9e-06 Score=71.41 Aligned_cols=86 Identities=9% Similarity=-0.031 Sum_probs=64.4
Q ss_pred ccceeEccCCCCcccCCcccCCCCCCCEEEcccCc-CCCCCchhccCC----CCCCEeeccCC-cCcccCchhccCCCCC
Q 036320 250 SIEELLLINTSISGCLPPEVGYLYKLRVLDVSLNK-LVGPIPYSIAGL----AHLELLNLAHN-MMSGIVPEGVCLLPNL 323 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~L~~N-~l~~~~p~~l~~l~~L 323 (404)
.|+.||++++.++..--..+.++++|++|+|++|. |++..-..+..+ ++|++|+|++| +|++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 68888888888776555667788899999999884 765444455554 36899999987 4876655667788899
Q ss_pred cEEeccCCc-Ccc
Q 036320 324 SNFTFSYNF-FCE 335 (404)
Q Consensus 324 ~~L~l~~N~-l~~ 335 (404)
++|+++++. +++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 999998875 554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=3e-06 Score=71.35 Aligned_cols=84 Identities=17% Similarity=0.088 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCCCCccCcccccCCCCCCEEECCCCc-CCCCCcccCCCC----CCCCEEeCcCcc-cCCCCCcccCCCCC
Q 036320 105 QVVSGIDLNNADIAGFLPDELGLLSDLALIHLNSNR-FCGIVPQTLSNL----TLLYELDLSNNR-FVGPFPNVVLSLPM 178 (404)
Q Consensus 105 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 178 (404)
-.+++||++++.+++.--..+.++++|++|+|++|. +++.--..++.+ ++|++|+|++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999877544567889999999999884 765444455554 369999999974 77544455778889
Q ss_pred CCEEEccccc
Q 036320 179 LNYLDIRFNE 188 (404)
Q Consensus 179 L~~L~L~~n~ 188 (404)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999998875
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.62 E-value=1.4e-05 Score=68.54 Aligned_cols=84 Identities=21% Similarity=0.161 Sum_probs=38.1
Q ss_pred ccceeEccCCCCccc----CCcccCCCCCCCEEEcccCcCCCC----CchhccCCCCCCEeeccCC---cCccc----Cc
Q 036320 250 SIEELLLINTSISGC----LPPEVGYLYKLRVLDVSLNKLVGP----IPYSIAGLAHLELLNLAHN---MMSGI----VP 314 (404)
Q Consensus 250 ~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N---~l~~~----~p 314 (404)
.|+.|+|++|.|.+. +.+.+...+.|++|+|+.|.|.+. +.+.+...+.|++|+|++| .+... +.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 445555555554421 223333445555555555555422 1223344445555555543 22221 22
Q ss_pred hhccCCCCCcEEeccCCcC
Q 036320 315 EGVCLLPNLSNFTFSYNFF 333 (404)
Q Consensus 315 ~~l~~l~~L~~L~l~~N~l 333 (404)
+.+..-++|+.|+++.|.+
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 3344445566666655543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.42 E-value=5.8e-05 Score=64.65 Aligned_cols=90 Identities=11% Similarity=0.058 Sum_probs=52.7
Q ss_pred ccCCCCcceeccccCcCCCC----ChhHHHhhhcccceeEccCCCCcc----cCCcccCCCCCCCEEEcccCc---CCC-
Q 036320 220 FGSNNSASVLVIANNKFGGC----LPPSVANLANSIEELLLINTSISG----CLPPEVGYLYKLRVLDVSLNK---LVG- 287 (404)
Q Consensus 220 ~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~---l~~- 287 (404)
+...+.|+.|+|++|+|... +.+.+..-. .|++|+|++|.|.+ .+-+.+...+.|++|+|++|. +..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 34445555555555555422 223333333 56666666666663 233556667788888888653 332
Q ss_pred ---CCchhccCCCCCCEeeccCCcCc
Q 036320 288 ---PIPYSIAGLAHLELLNLAHNMMS 310 (404)
Q Consensus 288 ---~~p~~l~~l~~L~~L~L~~N~l~ 310 (404)
.+...+...+.|+.|+++.|.+.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 13345666788999999887654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.002 Score=51.33 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=25.3
Q ss_pred EEEcCCCCCC-ccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcCccc
Q 036320 109 GIDLNNADIA-GFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSNNRF 165 (404)
Q Consensus 109 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 165 (404)
.++.++++++ ..+|..+. .+|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4666666665 12443221 2344555555555443333444444444444444443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0021 Score=51.16 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=46.7
Q ss_pred CEEECCCCcCC-CCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccccCC
Q 036320 132 ALIHLNSNRFC-GIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFNEFE 190 (404)
Q Consensus 132 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 190 (404)
..++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888899887 34664432 46999999999999777778899999999999999876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.44 E-value=38 Score=24.70 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=23.7
Q ss_pred CCccCcccccCCCCCCEEECCCCcCCCCCcccCCCCCCCCEEeCcC
Q 036320 117 IAGFLPDELGLLSDLALIHLNSNRFCGIVPQTLSNLTLLYELDLSN 162 (404)
Q Consensus 117 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 162 (404)
++.+-..+|.+++.|+.+.|..+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333445666666666666543 3323344566666666665544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.24 E-value=29 Score=25.40 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=36.6
Q ss_pred CCcCCCCCcccCCCCCCCCEEeCcCcccCCCCCcccCCCCCCCEEEcccc
Q 036320 138 SNRFCGIVPQTLSNLTLLYELDLSNNRFVGPFPNVVLSLPMLNYLDIRFN 187 (404)
Q Consensus 138 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 187 (404)
+..++.+-...|.+++.|+.+.+-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34556555678889999999988764 55455678889999999888754
Done!