BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036322
         (360 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
           C.Elegans
          Length = 126

 Score = 28.1 bits (61), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 325 QARRLYQDALHMNSDNLQVREALSSCM 351
           +A+R Y+DAL ++  N + RE + +C+
Sbjct: 99  KAQRAYEDALQVDPSNEEAREGVRNCL 125


>pdb|3H7L|A Chain A, Crystal Structure Of Endoglucanase-Related Protein From
           Vibrio Parahaemolyticus
 pdb|3H7L|B Chain B, Crystal Structure Of Endoglucanase-Related Protein From
           Vibrio Parahaemolyticus
 pdb|3H7L|C Chain C, Crystal Structure Of Endoglucanase-Related Protein From
           Vibrio Parahaemolyticus
          Length = 586

 Score = 27.7 bits (60), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 3   TNEYSYQNKRLQFTN-NHRDSVNMGHTNESETWESGDN 39
           TN + Y  + ++  N + RD+  + H NES  W  G+N
Sbjct: 407 TNPFGYPRQYVKGVNESKRDAFFVAHNNESGYWWQGEN 444


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,927,062
Number of Sequences: 62578
Number of extensions: 372597
Number of successful extensions: 873
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 4
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)