BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036322
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8FDN6|MASZ_ECOL6 Malate synthase G OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=glcB PE=3 SV=3
Length = 723
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 59 YRSSYNREKDENQIYSSMLRE-EKVNPEDDSHLTDHLRARESEISSSSSSKFIDDVMFDR 117
+RS+ KD+ Y S LRE + P+ D H+T +SEI+S + + + M R
Sbjct: 68 HRSNPGPVKDK-AAYKSFLRELGYLVPQPD-HVTVETTGIDSEITSQAGPQLVVPAMNAR 125
Query: 118 Y-LTEAND--------------LPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHM 162
Y L AN +P+ M SG+D +R E ++ R L +++ +++
Sbjct: 126 YALNAANARWGSLYDALYGSDIIPQEG--AMVSGYDPQRGEQVIAWVRRFLDESLPLENG 183
Query: 163 S 163
S
Sbjct: 184 S 184
>sp|Q91WU5|AS3MT_MOUSE Arsenite methyltransferase OS=Mus musculus GN=As3mt PE=2 SV=2
Length = 376
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 19/115 (16%)
Query: 240 RKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIF----SAAIDNFDAMMLKGNIYAP 295
R ++L + R +YN G+ E FDA+ F + A+D A +LK + +AP
Sbjct: 259 RLFKLPKTEPAERCRVVYNGGIKGHEKELIFDANFTFKEGEAVAVDEETAAVLKNSRFAP 318
Query: 296 DALFGWA----VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346
D LF A Q RS L E L++ +L +D SD ++ R A
Sbjct: 319 DFLFTPVDASLPAPQGRSEL------ETKVLIRDPFKLAED-----SDKMKPRHA 362
>sp|P53684|CDPKB_ORYSJ Calcium-dependent protein kinase isoform 11 OS=Oryza sativa subsp.
japonica GN=CPK11 PE=2 SV=2
Length = 542
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 96 ARESEISSSSSSKFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQ 155
RE + ++D FD E N+ A ++ G D ++ K+A L
Sbjct: 19 PREHAVGYVQGDSYLDLKKFDDTWPEVNNFKPTAASILRRGLDPTSINVLGRKTADLREH 78
Query: 156 AIAMQHMSLLAVDQLGNTYLVRE-ELKLHFSCKL---RRLLLEGDVISVEEQKRILKGL 210
I + L Q G TYL E ++CK R+L+ + DV V + +I+ L
Sbjct: 79 YIIGRK---LGQGQFGTTYLCTEINTGCEYACKTIPKRKLITKEDVEDVRREIQIMHHL 134
>sp|Q667Y8|PEPB_YERPS Peptidase B OS=Yersinia pseudotuberculosis serotype I (strain
IP32953) GN=pepB PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK-----IASLLVDACEEC 231
+E +KL+ C ++ G+ + + R G + MN D +A L+DA E+
Sbjct: 239 KERVKLYLCCADN--MVSGNAFKLGDIIRYRNGKTVEIMNTDAEGRLVLADGLIDASEQN 296
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWG--LALFFLETAFDADKIF 276
L++ A A + GND AL+++ LA L +A ++F
Sbjct: 297 APLIIDAATLTGAAKTALGNDYHALFSFDDELAQALLNSAHSEHELF 343
>sp|B2K9R0|PEPB_YERPB Peptidase B OS=Yersinia pseudotuberculosis serotype IB (strain
PB1/+) GN=pepB PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK-----IASLLVDACEEC 231
+E +KL+ C ++ G+ + + R G + MN D +A L+DA E+
Sbjct: 239 KERVKLYLCCADN--MVSGNAFKLGDIIRYRNGKTVEIMNTDAEGRLVLADGLIDASEQN 296
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWG--LALFFLETAFDADKIF 276
L++ A A + GND AL+++ LA L +A ++F
Sbjct: 297 APLIIDAATLTGAAKTALGNDYHALFSFDDELAQALLNSAHSEHELF 343
>sp|B1JRZ6|PEPB_YERPY Peptidase B OS=Yersinia pseudotuberculosis serotype O:3 (strain
YPIII) GN=pepB PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK-----IASLLVDACEEC 231
+E +KL+ C ++ G+ + + R G + MN D +A L+DA E+
Sbjct: 239 KERVKLYLCCADN--MVSGNAFKLGDIIRYRNGKTVEIMNTDAEGRLVLADGLIDASEQN 296
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWG--LALFFLETAFDADKIF 276
L++ A A + GND AL+++ LA L +A ++F
Sbjct: 297 APLIIDAATLTGAAKTALGNDYHALFSFDDELAQALLNSAHSEHELF 343
>sp|A4TMU7|PEPB_YERPP Peptidase B OS=Yersinia pestis (strain Pestoides F) GN=pepB PE=3
SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK-----IASLLVDACEEC 231
+E +KL+ C ++ G+ + + R G + MN D +A L+DA E+
Sbjct: 239 KERVKLYLCCADN--MVSGNAFKLGDIIRYRNGKTVEIMNTDAEGRLVLADGLIDASEQN 296
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWG--LALFFLETAFDADKIF 276
L++ A A + GND AL+++ LA L +A ++F
Sbjct: 297 APLIIDAATLTGAAKTALGNDYHALFSFDDELAQALLNSAHSEHELF 343
>sp|Q1CKA2|PEPB_YERPN Peptidase B OS=Yersinia pestis bv. Antiqua (strain Nepal516)
GN=pepB PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK-----IASLLVDACEEC 231
+E +KL+ C ++ G+ + + R G + MN D +A L+DA E+
Sbjct: 239 KERVKLYLCCADN--MVSGNAFKLGDIIRYRNGKTVEIMNTDAEGRLVLADGLIDASEQN 296
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWG--LALFFLETAFDADKIF 276
L++ A A + GND AL+++ LA L +A ++F
Sbjct: 297 APLIIDAATLTGAAKTALGNDYHALFSFDDELAQALLNSAHSEHELF 343
>sp|A9R811|PEPB_YERPG Peptidase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=pepB
PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK-----IASLLVDACEEC 231
+E +KL+ C ++ G+ + + R G + MN D +A L+DA E+
Sbjct: 239 KERVKLYLCCADN--MVSGNAFKLGDIIRYRNGKTVEIMNTDAEGRLVLADGLIDASEQN 296
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWG--LALFFLETAFDADKIF 276
L++ A A + GND AL+++ LA L +A ++F
Sbjct: 297 APLIIDAATLTGAAKTALGNDYHALFSFDDELAQALLNSAHSEHELF 343
>sp|P58475|PEPB_YERPE Peptidase B OS=Yersinia pestis GN=pepB PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK-----IASLLVDACEEC 231
+E +KL+ C ++ G+ + + R G + MN D +A L+DA E+
Sbjct: 239 KERVKLYLCCADN--MVSGNAFKLGDIIRYRNGKTVEIMNTDAEGRLVLADGLIDASEQN 296
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWG--LALFFLETAFDADKIF 276
L++ A A + GND AL+++ LA L +A ++F
Sbjct: 297 APLIIDAATLTGAAKTALGNDYHALFSFDDELAQALLNSAHSEHELF 343
>sp|Q1C5H7|PEPB_YERPA Peptidase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=pepB
PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK-----IASLLVDACEEC 231
+E +KL+ C ++ G+ + + R G + MN D +A L+DA E+
Sbjct: 239 KERVKLYLCCADN--MVSGNAFKLGDIIRYRNGKTVEIMNTDAEGRLVLADGLIDASEQN 296
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWG--LALFFLETAFDADKIF 276
L++ A A + GND AL+++ LA L +A ++F
Sbjct: 297 APLIIDAATLTGAAKTALGNDYHALFSFDDELAQALLNSAHSEHELF 343
>sp|A7FFX8|PEPB_YERP3 Peptidase B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
31758) GN=pepB PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK-----IASLLVDACEEC 231
+E +KL+ C ++ G+ + + R G + MN D +A L+DA E+
Sbjct: 239 KERVKLYLCCADN--MVSGNAFKLGDIIRYRNGKTVEIMNTDAEGRLVLADGLIDASEQN 296
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWG--LALFFLETAFDADKIF 276
L++ A A + GND AL+++ LA L +A ++F
Sbjct: 297 APLIIDAATLTGAAKTALGNDYHALFSFDDELAQALLTSAHSEHELF 343
>sp|P57225|SYT_BUCAI Threonine--tRNA ligase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=thrS PE=3 SV=1
Length = 642
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 24/155 (15%)
Query: 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL--RRLLLEGDVISVE 201
+I + A+LLS AI ++ + Q+ + ++ + F C + +R + E D+I +E
Sbjct: 70 IIRYSCAQLLSYAIK----NIWPLAQIATSNIIED----GFYCDIDFKRSISEKDLILLE 121
Query: 202 EQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGL 261
Q ++L +Y +NK + + E E+ K KY+++L ID N N +
Sbjct: 122 NQMKMLVKREYNILNK-------LISYSEAREIFQKCFEKYKVSL-IDEN---INCNSKV 170
Query: 262 ALFFLETAFDAD---KIFSAAIDNFDAMMLKGNIY 293
+L++ E D D ++F+ + + G +Y
Sbjct: 171 SLYYHENYADIDIGLQVFNIKFCKYFKLQKIGGVY 205
>sp|B8D730|SYT_BUCAT Threonine--tRNA ligase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain Tuc7) GN=thrS PE=3 SV=1
Length = 642
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL--RRLLLEGDVISVE 201
+I + A+LLS AI ++ + Q+ + ++ + F C + +R + E D+I +E
Sbjct: 70 IIRYSCAQLLSYAIK----NIWPLAQIATSNIIEDG----FYCDIDFKRSISEKDLILLE 121
Query: 202 EQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGL 261
Q + L +Y +NK + + E E+ K KY+++L ID N N +
Sbjct: 122 NQMKTLVKREYNILNK-------LISYSEAREIFQKCFEKYKVSL-IDEN---IHCNSKV 170
Query: 262 ALFFLETAFDAD---KIFSAAIDNFDAMMLKGNIY 293
+L++ E D D ++F+ + + G +Y
Sbjct: 171 SLYYHENYADIDIGLQVFNIKFCKYFKLQKIGGVY 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,431,324
Number of Sequences: 539616
Number of extensions: 4998073
Number of successful extensions: 15428
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 15405
Number of HSP's gapped (non-prelim): 66
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)