Query 036322
Match_columns 360
No_of_seqs 40 out of 42
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 11:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06552 TOM20_plant: Plant sp 99.8 1.4E-19 3.1E-24 164.4 12.9 117 234-352 6-125 (186)
2 PF06552 TOM20_plant: Plant sp 99.5 8.6E-14 1.9E-18 126.9 14.0 113 146-306 7-123 (186)
3 KOG4626 O-linked N-acetylgluco 99.2 2.2E-10 4.8E-15 120.5 13.8 173 145-346 233-427 (966)
4 KOG4626 O-linked N-acetylgluco 99.1 6.4E-10 1.4E-14 117.1 13.9 175 146-354 166-367 (966)
5 PRK15359 type III secretion sy 98.8 3.8E-08 8.2E-13 83.1 11.0 91 236-346 41-131 (144)
6 PRK15359 type III secretion sy 98.7 4.7E-07 1E-11 76.5 12.6 67 236-310 75-141 (144)
7 PRK11447 cellulose synthase su 98.6 5.2E-06 1.1E-10 90.5 21.9 189 146-353 285-507 (1157)
8 PRK15174 Vi polysaccharide exp 98.6 3.4E-06 7.4E-11 87.3 19.5 190 146-353 126-330 (656)
9 TIGR00990 3a0801s09 mitochondr 98.6 4.6E-06 1E-10 84.2 18.4 176 147-354 348-555 (615)
10 PRK12370 invasion protein regu 98.6 4.6E-06 1E-10 84.1 18.3 167 146-352 277-452 (553)
11 PRK10370 formate-dependent nit 98.5 2.2E-06 4.7E-11 76.6 13.3 131 147-353 56-189 (198)
12 TIGR02552 LcrH_SycD type III s 98.5 2.8E-06 6.1E-11 67.7 12.4 129 151-354 4-132 (135)
13 PRK11447 cellulose synthase su 98.5 8.9E-06 1.9E-10 88.7 19.3 194 146-354 367-650 (1157)
14 TIGR02521 type_IV_pilW type IV 98.4 1.5E-05 3.3E-10 64.9 15.4 165 147-352 48-214 (234)
15 PRK11189 lipoprotein NlpI; Pro 98.4 1.5E-05 3.2E-10 74.4 16.8 164 147-348 81-278 (296)
16 PRK09782 bacteriophage N4 rece 98.4 7.4E-06 1.6E-10 89.6 16.3 176 146-344 525-714 (987)
17 PRK12370 invasion protein regu 98.4 3.3E-05 7.1E-10 78.0 19.7 164 146-349 320-483 (553)
18 PRK15174 Vi polysaccharide exp 98.4 2.1E-05 4.6E-10 81.5 18.6 176 147-353 93-296 (656)
19 TIGR00990 3a0801s09 mitochondr 98.4 3.8E-05 8.2E-10 77.7 19.9 36 147-182 177-212 (615)
20 PRK09782 bacteriophage N4 rece 98.4 1.4E-05 3E-10 87.6 17.6 215 113-354 448-690 (987)
21 TIGR02917 PEP_TPR_lipo putativ 98.4 3.7E-05 8E-10 74.9 18.7 185 147-353 39-239 (899)
22 COG3063 PilF Tfp pilus assembl 98.3 6.1E-06 1.3E-10 78.9 12.0 127 148-348 53-180 (250)
23 PRK11189 lipoprotein NlpI; Pro 98.3 1.2E-05 2.7E-10 74.9 13.6 34 148-181 44-81 (296)
24 PLN03088 SGT1, suppressor of 98.3 7.6E-06 1.6E-10 79.0 11.2 103 233-355 16-118 (356)
25 TIGR02917 PEP_TPR_lipo putativ 98.1 0.0004 8.7E-09 67.8 18.8 198 146-354 651-884 (899)
26 TIGR02521 type_IV_pilW type IV 98.1 0.00027 5.7E-09 57.7 14.9 131 147-304 82-212 (234)
27 PRK11788 tetratricopeptide rep 98.0 0.0009 2E-08 61.9 18.7 117 147-280 52-168 (389)
28 PLN03088 SGT1, suppressor of 98.0 0.00011 2.4E-09 71.1 13.0 117 122-309 2-118 (356)
29 PRK15179 Vi polysaccharide bio 98.0 0.00035 7.6E-09 74.3 17.3 177 122-343 48-224 (694)
30 TIGR02795 tol_pal_ybgF tol-pal 98.0 7.7E-05 1.7E-09 56.9 9.2 97 235-348 18-117 (119)
31 CHL00033 ycf3 photosystem I as 98.0 0.00016 3.4E-09 61.3 11.9 111 235-353 51-166 (168)
32 PRK11788 tetratricopeptide rep 97.9 0.00098 2.1E-08 61.7 17.4 179 146-348 123-323 (389)
33 PRK15179 Vi polysaccharide bio 97.9 9.2E-05 2E-09 78.6 11.9 116 147-283 103-218 (694)
34 PF13429 TPR_15: Tetratricopep 97.7 0.00082 1.8E-08 60.9 12.9 100 235-354 162-261 (280)
35 PRK10049 pgaA outer membrane p 97.7 0.002 4.3E-08 68.0 17.0 98 146-265 65-162 (765)
36 PRK02603 photosystem I assembl 97.6 0.0013 2.8E-08 56.2 11.9 101 236-344 52-157 (172)
37 PLN02789 farnesyltranstransfer 97.6 0.011 2.4E-07 57.4 19.4 161 148-344 55-220 (320)
38 KOG1126 DNA-binding cell divis 97.5 0.0012 2.6E-08 70.2 12.9 147 157-344 414-560 (638)
39 cd05804 StaR_like StaR_like; a 97.5 0.0034 7.4E-08 57.6 13.6 161 159-355 1-162 (355)
40 PF13414 TPR_11: TPR repeat; P 97.4 0.00077 1.7E-08 48.8 7.4 68 252-338 2-69 (69)
41 PRK10153 DNA-binding transcrip 97.3 0.0072 1.6E-07 62.3 15.6 129 146-342 358-488 (517)
42 PRK10049 pgaA outer membrane p 97.3 0.0085 1.8E-07 63.3 16.4 129 148-306 33-161 (765)
43 TIGR03302 OM_YfiO outer membra 97.3 0.015 3.3E-07 50.9 15.2 145 147-310 50-218 (235)
44 TIGR02552 LcrH_SycD type III s 97.3 0.0045 9.9E-08 49.4 10.9 97 239-355 3-99 (135)
45 PRK10370 formate-dependent nit 97.2 0.0041 8.9E-08 55.7 11.3 102 236-354 56-157 (198)
46 PRK15363 pathogenicity island 97.2 0.0017 3.6E-08 58.5 8.7 100 235-354 51-153 (157)
47 PF13431 TPR_17: Tetratricopep 97.2 0.00027 5.9E-09 47.8 2.3 31 152-182 1-31 (34)
48 cd05804 StaR_like StaR_like; a 97.1 0.018 3.9E-07 52.9 14.5 116 148-283 61-178 (355)
49 KOG0553 TPR repeat-containing 97.1 0.0055 1.2E-07 60.5 11.2 170 144-356 29-198 (304)
50 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0055 1.2E-07 46.8 8.9 48 236-283 56-106 (119)
51 TIGR03302 OM_YfiO outer membra 97.0 0.0079 1.7E-07 52.6 10.8 105 235-348 49-156 (235)
52 KOG1155 Anaphase-promoting com 97.0 0.0049 1.1E-07 64.4 10.6 87 236-335 381-494 (559)
53 cd00189 TPR Tetratricopeptide 96.9 0.012 2.7E-07 39.8 8.8 80 146-280 16-95 (100)
54 PRK15363 pathogenicity island 96.9 0.015 3.2E-07 52.5 11.7 28 238-265 88-115 (157)
55 PF13429 TPR_15: Tetratricopep 96.9 0.0065 1.4E-07 55.1 9.5 115 147-282 163-277 (280)
56 KOG1125 TPR repeat-containing 96.9 0.0025 5.5E-08 67.1 7.3 45 236-280 481-525 (579)
57 KOG0548 Molecular co-chaperone 96.8 0.25 5.4E-06 52.3 20.9 101 234-354 373-473 (539)
58 PRK11906 transcriptional regul 96.8 0.033 7.2E-07 57.7 14.4 140 145-351 273-415 (458)
59 CHL00033 ycf3 photosystem I as 96.7 0.025 5.4E-07 48.0 11.2 56 236-291 89-151 (168)
60 cd00189 TPR Tetratricopeptide 96.7 0.053 1.2E-06 36.6 10.7 86 234-339 15-100 (100)
61 PF13432 TPR_16: Tetratricopep 96.7 0.0074 1.6E-07 43.4 6.4 53 276-341 13-65 (65)
62 PRK02603 photosystem I assembl 96.6 0.024 5.2E-07 48.6 10.4 69 236-308 89-164 (172)
63 COG5010 TadD Flp pilus assembl 96.5 0.096 2.1E-06 50.9 14.7 160 147-348 50-209 (257)
64 PF13428 TPR_14: Tetratricopep 96.5 0.0056 1.2E-07 42.4 4.7 44 295-350 1-44 (44)
65 PLN02789 farnesyltranstransfer 96.4 0.22 4.9E-06 48.5 16.8 176 146-353 88-267 (320)
66 PF13414 TPR_11: TPR repeat; P 96.4 0.0074 1.6E-07 43.6 5.0 48 233-280 17-65 (69)
67 PRK14574 hmsH outer membrane p 96.3 0.099 2.2E-06 57.2 14.7 168 147-343 119-287 (822)
68 KOG0553 TPR repeat-containing 96.2 0.062 1.3E-06 53.3 11.9 116 119-263 78-193 (304)
69 KOG1840 Kinesin light chain [C 96.2 0.36 7.8E-06 50.6 18.0 209 119-348 215-454 (508)
70 KOG2002 TPR-containing nuclear 96.2 0.19 4.1E-06 56.3 16.4 179 143-344 543-753 (1018)
71 PRK14574 hmsH outer membrane p 96.2 0.26 5.6E-06 54.0 17.2 158 148-347 52-209 (822)
72 PF13431 TPR_17: Tetratricopep 96.1 0.0042 9E-08 42.0 2.2 32 242-273 2-33 (34)
73 PRK10803 tol-pal system protei 96.0 0.055 1.2E-06 51.4 10.0 97 235-348 159-258 (263)
74 PRK10747 putative protoheme IX 95.8 0.4 8.8E-06 46.9 15.2 179 147-355 170-375 (398)
75 PF13432 TPR_16: Tetratricopep 95.7 0.024 5.1E-07 40.8 4.8 48 235-282 13-60 (65)
76 COG4235 Cytochrome c biogenesi 95.6 0.3 6.5E-06 48.1 13.6 128 147-349 139-269 (287)
77 KOG1173 Anaphase-promoting com 95.6 0.47 1E-05 50.9 15.5 170 148-353 330-535 (611)
78 KOG1125 TPR repeat-containing 95.4 0.62 1.3E-05 49.8 15.9 59 275-346 445-503 (579)
79 KOG4234 TPR repeat-containing 95.3 0.16 3.4E-06 49.3 10.3 95 234-348 110-209 (271)
80 TIGR00540 hemY_coli hemY prote 95.3 3.3 7.2E-05 40.6 21.1 35 147-181 170-204 (409)
81 KOG2002 TPR-containing nuclear 95.1 1.9 4E-05 48.8 18.8 126 227-353 504-658 (1018)
82 KOG4162 Predicted calmodulin-b 95.0 0.15 3.3E-06 55.9 10.3 93 229-341 694-788 (799)
83 KOG4162 Predicted calmodulin-b 95.0 2.2 4.9E-05 47.2 18.9 41 316-356 693-733 (799)
84 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.062 1.3E-06 55.7 6.9 47 236-282 92-141 (453)
85 PF14559 TPR_19: Tetratricopep 94.9 0.05 1.1E-06 39.0 4.4 37 146-182 7-43 (68)
86 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.16 3.4E-06 52.8 9.2 69 248-329 70-141 (453)
87 KOG0547 Translocase of outer m 94.7 1.2 2.5E-05 47.7 15.4 161 148-349 378-545 (606)
88 PF14559 TPR_19: Tetratricopep 94.6 0.042 9.2E-07 39.4 3.4 49 235-283 7-55 (68)
89 PRK14720 transcript cleavage f 94.5 1.3 2.8E-05 49.6 16.0 191 146-353 47-269 (906)
90 KOG1840 Kinesin light chain [C 94.4 0.92 2E-05 47.6 13.8 123 228-355 299-423 (508)
91 PF07719 TPR_2: Tetratricopept 94.4 0.083 1.8E-06 33.4 4.0 34 295-340 1-34 (34)
92 KOG0547 Translocase of outer m 94.3 1 2.2E-05 48.1 13.9 149 149-339 345-494 (606)
93 PRK10803 tol-pal system protei 94.1 0.29 6.2E-06 46.6 8.7 83 147-284 160-248 (263)
94 PF00515 TPR_1: Tetratricopept 93.6 0.12 2.5E-06 33.3 3.7 34 295-340 1-34 (34)
95 PRK10153 DNA-binding transcrip 93.5 3.3 7.1E-05 43.2 15.8 104 234-350 357-462 (517)
96 KOG1173 Anaphase-promoting com 92.9 2.3 5.1E-05 45.8 13.8 34 148-181 364-397 (611)
97 KOG1174 Anaphase-promoting com 92.6 4.2 9.2E-05 43.1 15.0 175 138-349 312-513 (564)
98 COG5010 TadD Flp pilus assembl 92.6 0.52 1.1E-05 45.9 7.9 62 236-305 151-212 (257)
99 KOG1126 DNA-binding cell divis 92.5 5.6 0.00012 43.3 16.0 178 143-344 332-526 (638)
100 PF13371 TPR_9: Tetratricopept 91.6 1 2.2E-05 32.7 6.8 60 275-347 10-69 (73)
101 PRK11906 transcriptional regul 91.2 1.2 2.6E-05 46.5 9.2 79 146-279 320-398 (458)
102 KOG0548 Molecular co-chaperone 91.0 1.3 2.7E-05 47.2 9.2 97 235-351 18-114 (539)
103 PF12688 TPR_5: Tetratrico pep 90.9 1.5 3.2E-05 37.5 8.0 92 236-337 18-116 (120)
104 PRK10866 outer membrane biogen 90.9 3 6.5E-05 38.9 10.8 115 234-355 47-175 (243)
105 KOG1155 Anaphase-promoting com 90.8 1.8 3.9E-05 46.0 10.0 102 235-356 346-447 (559)
106 PF13525 YfiO: Outer membrane 90.5 3.6 7.7E-05 36.8 10.5 115 235-355 21-141 (203)
107 KOG2076 RNA polymerase III tra 90.4 12 0.00026 42.3 16.2 47 143-189 220-266 (895)
108 KOG0543 FKBP-type peptidyl-pro 90.2 1 2.2E-05 46.4 7.5 64 276-352 273-336 (397)
109 KOG3824 Huntingtin interacting 89.4 0.91 2E-05 46.6 6.5 86 116-264 110-195 (472)
110 PF13424 TPR_12: Tetratricopep 89.4 1.2 2.6E-05 32.9 5.6 77 250-332 2-78 (78)
111 KOG1127 TPR repeat-containing 89.3 7.2 0.00016 44.9 13.7 189 148-356 510-707 (1238)
112 PRK10866 outer membrane biogen 89.3 1.1 2.5E-05 41.7 6.6 80 250-346 29-108 (243)
113 PF13428 TPR_14: Tetratricopep 88.9 0.56 1.2E-05 32.4 3.3 27 146-172 17-43 (44)
114 COG4235 Cytochrome c biogenesi 88.6 4.1 8.9E-05 40.3 10.2 91 146-295 172-262 (287)
115 PF02259 FAT: FAT domain; Int 88.4 3.5 7.6E-05 37.9 9.0 63 234-296 273-345 (352)
116 PF14938 SNAP: Soluble NSF att 88.4 15 0.00034 34.3 13.4 109 230-353 92-206 (282)
117 smart00028 TPR Tetratricopepti 87.7 1.4 3.1E-05 24.6 4.1 34 295-340 1-34 (34)
118 COG2956 Predicted N-acetylgluc 87.2 18 0.00039 37.4 13.9 62 148-211 53-114 (389)
119 PF13525 YfiO: Outer membrane 86.8 2.6 5.6E-05 37.6 7.1 79 251-346 3-81 (203)
120 KOG0624 dsRNA-activated protei 86.3 17 0.00037 38.1 13.3 39 144-182 52-90 (504)
121 KOG2003 TPR repeat-containing 86.0 1.9 4.1E-05 46.3 6.6 94 235-348 506-599 (840)
122 PF02259 FAT: FAT domain; Int 85.6 2.7 5.8E-05 38.6 6.7 63 276-339 274-341 (352)
123 PF13371 TPR_9: Tetratricopept 85.2 2.4 5.3E-05 30.7 5.1 55 235-297 11-65 (73)
124 KOG1129 TPR repeat-containing 85.0 25 0.00055 36.7 13.7 109 231-347 302-435 (478)
125 PF14561 TPR_20: Tetratricopep 84.0 11 0.00024 30.6 8.9 40 150-189 8-47 (90)
126 COG4783 Putative Zn-dependent 83.9 8.2 0.00018 40.9 10.0 57 147-205 357-413 (484)
127 KOG0624 dsRNA-activated protei 83.9 9.2 0.0002 40.0 10.2 91 238-348 57-147 (504)
128 KOG1174 Anaphase-promoting com 82.8 72 0.0016 34.3 16.1 229 94-354 173-452 (564)
129 KOG4648 Uncharacterized conser 82.3 3.5 7.7E-05 43.0 6.6 35 146-180 113-147 (536)
130 COG3063 PilF Tfp pilus assembl 82.2 12 0.00026 36.7 9.8 92 148-258 87-178 (250)
131 PF03704 BTAD: Bacterial trans 81.8 28 0.0006 28.7 12.9 57 235-291 78-134 (146)
132 COG4976 Predicted methyltransf 81.3 6.4 0.00014 39.0 7.6 55 236-295 46-111 (287)
133 KOG2003 TPR repeat-containing 79.0 1.1E+02 0.0023 33.7 16.7 112 222-346 559-699 (840)
134 KOG0550 Molecular chaperone (D 78.9 18 0.0004 38.3 10.4 98 145-264 264-368 (486)
135 TIGR00540 hemY_coli hemY prote 78.3 73 0.0016 31.4 17.8 145 151-328 246-398 (409)
136 PRK14720 transcript cleavage f 78.1 8.1 0.00018 43.6 8.1 30 235-265 47-76 (906)
137 PF13424 TPR_12: Tetratricopep 76.4 9.6 0.00021 28.1 5.7 57 229-285 22-78 (78)
138 PRK10747 putative protoheme IX 75.1 89 0.0019 30.8 16.0 133 160-337 259-391 (398)
139 KOG1130 Predicted G-alpha GTPa 74.3 59 0.0013 35.1 12.6 184 140-354 165-368 (639)
140 KOG1129 TPR repeat-containing 73.9 27 0.00059 36.5 9.9 49 235-283 411-459 (478)
141 KOG2076 RNA polymerase III tra 73.8 89 0.0019 35.7 14.4 95 148-264 157-252 (895)
142 PF12688 TPR_5: Tetratrico pep 73.2 22 0.00047 30.5 7.8 67 254-330 2-68 (120)
143 COG0457 NrfG FOG: TPR repeat [ 72.9 37 0.0008 25.4 14.2 33 147-179 76-110 (291)
144 PF12895 Apc3: Anaphase-promot 71.0 15 0.00032 27.8 5.7 37 146-182 5-43 (84)
145 PF13174 TPR_6: Tetratricopept 70.0 8.6 0.00019 23.7 3.6 33 296-340 1-33 (33)
146 PF13374 TPR_10: Tetratricopep 69.0 12 0.00026 24.0 4.2 39 296-341 3-41 (42)
147 PF13174 TPR_6: Tetratricopept 68.6 4.7 0.0001 24.9 2.2 30 254-283 1-30 (33)
148 PF13281 DUF4071: Domain of un 67.8 32 0.0007 35.2 8.9 85 252-346 178-265 (374)
149 PF13512 TPR_18: Tetratricopep 66.4 17 0.00036 32.7 5.9 60 275-346 25-86 (142)
150 COG3118 Thioredoxin domain-con 66.4 98 0.0021 31.4 11.7 101 72-180 71-184 (304)
151 PF13181 TPR_8: Tetratricopept 66.4 3.5 7.6E-05 26.1 1.2 33 296-340 2-34 (34)
152 KOG1128 Uncharacterized conser 64.4 41 0.00089 37.7 9.4 45 236-280 536-580 (777)
153 KOG4234 TPR repeat-containing 62.3 1.5E+02 0.0032 29.5 11.7 141 111-284 84-231 (271)
154 PF09976 TPR_21: Tetratricopep 61.3 96 0.0021 25.9 10.2 108 150-280 31-145 (145)
155 KOG0376 Serine-threonine phosp 61.2 29 0.00062 36.9 7.3 99 233-351 18-116 (476)
156 PRK15331 chaperone protein Sic 60.0 1.3E+02 0.0028 27.9 10.5 99 236-355 54-152 (165)
157 cd07603 BAR_ACAPs The Bin/Amph 59.9 1.1E+02 0.0024 28.4 10.2 52 267-333 101-152 (200)
158 PF14853 Fis1_TPR_C: Fis1 C-te 58.2 11 0.00023 28.5 2.7 28 322-349 16-43 (53)
159 COG4783 Putative Zn-dependent 56.5 2.9E+02 0.0062 29.8 14.4 152 161-344 303-463 (484)
160 KOG3060 Uncharacterized conser 56.1 2.3E+02 0.005 28.7 13.8 164 104-288 83-270 (289)
161 PF04733 Coatomer_E: Coatomer 55.3 64 0.0014 31.2 8.1 30 228-265 217-246 (290)
162 PF12895 Apc3: Anaphase-promot 55.2 44 0.00096 25.2 5.7 67 276-355 5-72 (84)
163 COG0457 NrfG FOG: TPR repeat [ 55.1 87 0.0019 23.4 13.7 154 146-339 111-268 (291)
164 PRK15331 chaperone protein Sic 54.6 94 0.002 28.8 8.7 52 231-282 83-134 (165)
165 KOG0543 FKBP-type peptidyl-pro 54.4 1.1E+02 0.0023 32.1 10.0 37 147-183 274-310 (397)
166 KOG3060 Uncharacterized conser 54.2 1.9E+02 0.0042 29.2 11.3 114 230-354 97-238 (289)
167 KOG0550 Molecular chaperone (D 53.3 94 0.002 33.2 9.4 96 235-351 265-364 (486)
168 KOG4642 Chaperone-dependent E3 52.3 63 0.0014 32.4 7.6 44 241-284 66-109 (284)
169 KOG1308 Hsp70-interacting prot 50.6 35 0.00077 35.3 5.8 57 118-182 110-166 (377)
170 COG1729 Uncharacterized protei 50.2 1.5E+02 0.0033 29.2 9.9 95 235-346 157-254 (262)
171 PF13176 TPR_7: Tetratricopept 49.7 12 0.00026 25.0 1.6 16 322-337 14-29 (36)
172 COG0497 RecN ATPase involved i 48.2 1.7E+02 0.0038 31.8 10.7 101 91-196 187-293 (557)
173 PLN03081 pentatricopeptide (PP 47.6 3.7E+02 0.0079 28.4 14.6 28 323-350 510-537 (697)
174 COG4785 NlpI Lipoprotein NlpI, 47.1 43 0.00093 33.4 5.6 78 133-265 56-145 (297)
175 PF09976 TPR_21: Tetratricopep 46.6 1.6E+02 0.0035 24.5 8.3 42 235-276 64-108 (145)
176 PF14863 Alkyl_sulf_dimr: Alky 46.1 58 0.0013 29.0 5.8 49 123-179 71-119 (141)
177 KOG4555 TPR repeat-containing 45.8 2.4E+02 0.0051 26.5 9.7 72 146-218 59-131 (175)
178 PF13374 TPR_10: Tetratricopep 45.3 36 0.00077 21.7 3.4 35 254-288 3-37 (42)
179 PF09295 ChAPs: ChAPs (Chs5p-A 44.4 46 0.001 34.1 5.6 36 147-182 251-286 (395)
180 KOG1118 Lysophosphatidic acid 44.3 1.9E+02 0.0042 29.9 9.7 108 74-188 8-130 (366)
181 KOG1128 Uncharacterized conser 43.2 60 0.0013 36.5 6.5 87 249-348 453-560 (777)
182 KOG0376 Serine-threonine phosp 43.0 46 0.001 35.4 5.4 107 121-256 3-109 (476)
183 KOG1811 Predicted Zn2+-binding 42.8 73 0.0016 35.9 7.0 92 228-336 558-653 (1141)
184 PF14561 TPR_20: Tetratricopep 41.8 36 0.00078 27.7 3.6 42 241-289 10-51 (90)
185 KOG3824 Huntingtin interacting 41.1 58 0.0013 34.0 5.7 55 277-344 133-187 (472)
186 KOG4555 TPR repeat-containing 41.0 2.4E+02 0.0053 26.5 9.1 67 235-308 59-128 (175)
187 PF09548 Spore_III_AB: Stage I 39.0 1.1E+02 0.0024 27.3 6.5 60 204-265 52-119 (170)
188 PF03704 BTAD: Bacterial trans 37.4 1.4E+02 0.0031 24.5 6.5 37 147-183 79-115 (146)
189 KOG4648 Uncharacterized conser 37.1 1.6E+02 0.0034 31.4 8.1 92 235-346 113-204 (536)
190 KOG1070 rRNA processing protei 36.8 5.5E+02 0.012 31.7 12.9 142 148-330 1442-1594(1710)
191 COG1729 Uncharacterized protei 36.6 68 0.0015 31.6 5.2 84 256-356 144-230 (262)
192 PF04184 ST7: ST7 protein; In 36.3 1.7E+02 0.0037 31.8 8.4 102 240-355 189-309 (539)
193 KOG1127 TPR repeat-containing 35.2 6E+02 0.013 30.3 12.7 120 146-265 53-190 (1238)
194 TIGR02284 conserved hypothetic 34.0 3.2E+02 0.0069 23.8 10.6 95 145-249 11-111 (139)
195 PF04733 Coatomer_E: Coatomer 30.2 4E+02 0.0088 25.8 9.3 93 238-352 150-246 (290)
196 PRK13184 pknD serine/threonine 29.8 2.6E+02 0.0056 32.2 8.9 100 229-342 485-587 (932)
197 PRK04841 transcriptional regul 28.3 7.7E+02 0.017 26.4 16.8 164 147-331 469-643 (903)
198 KOG1130 Predicted G-alpha GTPa 28.2 58 0.0013 35.1 3.4 43 133-180 107-151 (639)
199 PRK13184 pknD serine/threonine 27.9 1.4E+02 0.003 34.3 6.4 60 268-332 483-544 (932)
200 PF08424 NRDE-2: NRDE-2, neces 27.8 3.4E+02 0.0073 26.4 8.3 39 316-354 40-78 (321)
201 PF05168 HEPN: HEPN domain; I 27.1 2E+02 0.0043 22.3 5.5 43 116-159 2-44 (118)
202 PF04184 ST7: ST7 protein; In 27.0 8.8E+02 0.019 26.7 13.8 22 150-171 188-209 (539)
203 COG4105 ComL DNA uptake lipopr 26.7 2.5E+02 0.0054 27.8 7.2 76 252-346 33-110 (254)
204 KOG4507 Uncharacterized conser 26.4 2E+02 0.0043 32.5 7.0 50 113-177 640-689 (886)
205 PF04781 DUF627: Protein of un 26.0 1.7E+02 0.0036 25.7 5.3 53 117-173 35-87 (111)
206 KOG1550 Extracellular protein 25.1 5.2E+02 0.011 27.3 9.6 92 228-336 265-357 (552)
207 PF07739 TipAS: TipAS antibiot 25.0 1.9E+02 0.0041 23.1 5.2 67 113-182 28-96 (118)
208 TIGR02833 spore_III_AB stage I 24.9 71 0.0015 28.8 3.0 77 96-176 39-119 (170)
209 KOG1156 N-terminal acetyltrans 24.2 1.1E+03 0.023 26.8 15.4 63 283-351 201-263 (700)
210 cd07601 BAR_APPL The Bin/Amphi 23.8 6.5E+02 0.014 24.1 10.3 24 266-289 104-127 (215)
211 cd07621 BAR_SNX5_6 The Bin/Amp 23.2 6.8E+02 0.015 24.1 12.9 144 108-289 19-173 (219)
212 PF08238 Sel1: Sel1 repeat; I 22.9 1.2E+02 0.0027 19.4 3.1 34 295-335 1-36 (39)
213 PF14938 SNAP: Soluble NSF att 22.9 6.4E+02 0.014 23.7 10.8 23 324-346 213-235 (282)
214 PF13512 TPR_18: Tetratricopep 22.3 4.8E+02 0.01 23.6 7.6 70 276-347 63-139 (142)
215 KOG1550 Extracellular protein 21.0 7.2E+02 0.016 26.2 9.7 122 137-283 263-394 (552)
216 cd07639 BAR_ACAP1 The Bin/Amph 20.9 7.2E+02 0.016 23.5 9.7 51 268-333 102-152 (200)
217 cd07637 BAR_ACAP3 The Bin/Amph 20.6 7.1E+02 0.015 23.4 9.9 52 267-333 101-152 (200)
218 smart00386 HAT HAT (Half-A-TPR 20.5 1.1E+02 0.0024 18.2 2.4 24 323-346 3-26 (33)
No 1
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.82 E-value=1.4e-19 Score=164.36 Aligned_cols=117 Identities=23% Similarity=0.328 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+++.|+++|.++...||.|+++|||||.||.+ -....|+.+|+++||.||++|+.+.| ..|+||++||.|+..+|.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-NKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999 45567899999999999999999844 679999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
+.|+ ..++..++++|..+|++|++++|+|..-+.+|.-|..
T Consensus 85 l~~d-~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 85 LTPD-TAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred hcCC-hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999 7899999999999999999999999999999988854
No 2
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.55 E-value=8.6e-14 Score=126.94 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
|..|-+.++.+.+.+|.++++++|||-|||+....|
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk-------------------------------------------- 42 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK-------------------------------------------- 42 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS--------------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc--------------------------------------------
Confidence 345778888999999999999999999999753332
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
.+.|+.+++.+|+.||..||.++|+.|+||||||+|+.. ..+..+|+.+|++|.++|++|+..-|- ..+|+=
T Consensus 43 -~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~---ne~Y~k 118 (186)
T PF06552_consen 43 -QGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN---NELYRK 118 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT----HHHHH
T ss_pred -CcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC---cHHHHH
Confidence 133556899999999999999999999999999999999 666789999999999999999997443 456665
Q ss_pred HHHHH
Q 036322 302 AVALQ 306 (360)
Q Consensus 302 GlALq 306 (360)
.+-+.
T Consensus 119 sLe~~ 123 (186)
T PF06552_consen 119 SLEMA 123 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.19 E-value=2.2e-10 Score=120.50 Aligned_cols=173 Identities=19% Similarity=0.125 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 145 ILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 145 lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
=++.+++.|.+|+-++|.=++|++||||.|-+-+.---.+++-+|++.-. |-.....+++..--
T Consensus 233 ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iY-------------- 296 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIY-------------- 296 (966)
T ss_pred hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEE--------------
Confidence 36889999999999999999999999999998777766677777765433 22221222221100
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
-| .-+|..|.+-|++||++.|+=.+||-|-|+||-+-|+..+|++.|. .++.+++. -+|++||.|.+
T Consensus 297 ---ye--qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn-------kaL~l~p~-hadam~NLgni 363 (966)
T KOG4626|consen 297 ---YE--QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN-------KALRLCPN-HADAMNNLGNI 363 (966)
T ss_pred ---ec--cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH-------HHHHhCCc-cHHHHHHHHHH
Confidence 01 1367889999999999999999999999999999888777666554 55666554 37888888888
Q ss_pred HHHhhhcCCCChHHH----------------------HHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 305 LQQRSRLRPRNSKEK----------------------VKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 305 LqerA~lr~~sskEk----------------------~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
..+.-.+.+.+.-=+ +-=+..|+.+|.+||+++|...+++.-
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 888776543211100 112567899999999999999988753
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.13 E-value=6.4e-10 Score=117.10 Aligned_cols=175 Identities=19% Similarity=0.205 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|.+||.+||.++|...-|.-++||-+-+.|+|.-..++-|.++... |.-.-.|++ ++-++-
T Consensus 166 ~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsn--------------Lg~~f~ 229 (966)
T KOG4626|consen 166 LELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSN--------------LGCVFN 229 (966)
T ss_pred CcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--Cceeeeehh--------------cchHHh
Confidence 3456677777777777777777777777777776665544444433222 211111111 111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc---cc------------hhcH------------HHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL---ET------------AFDA------------DKIFSA 278 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~---~~------------a~eA------------e~L~~a 278 (360)
..+ + +-+|..+|..|+.+||+-.+||||-|.++.+. .. ..-| .-+..-
T Consensus 230 ~~G----e-i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 230 AQG----E-IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred hcc----h-HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence 111 1 35678899999999999999999999999881 11 1112 246788
Q ss_pred HHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 279 A~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
||+-|++++.+.+ .=|+||+|.|+||.+.. -+.+|+++|-.||++.|+.+++.+-|-.---|-
T Consensus 305 AI~~Ykral~~~P-~F~~Ay~NlanALkd~G------------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 305 AIDTYKRALELQP-NFPDAYNNLANALKDKG------------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred HHHHHHHHHhcCC-CchHHHhHHHHHHHhcc------------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 9999999999755 45999999999998874 356789999999999999999998887655443
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=3.8e-08 Score=83.07 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.+|...|..++.++|+++.++++=|.++...|. +.+|++-|++++.+ ++..|+++++||.+|...-
T Consensus 41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-------~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g------ 106 (144)
T PRK15359 41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-------YTTAINFYGHALML-DASHPEPVYQTGVCLKMMG------ 106 (144)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcC------
Confidence 345557888899999999999998888887555 45567777777765 4456899999999877644
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
-...|+..|+.||.++|++++...-
T Consensus 107 ------~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 107 ------EPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred ------CHHHHHHHHHHHHHhCCCChHHHHH
Confidence 2445888889999999999877643
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.66 E-value=4.7e-07 Score=76.46 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
.+|..-|..|++++|++..+++|||.++..-|.. .+|+.-|+.++...+ ..|+++.+=|.+++.+-.
T Consensus 75 ~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~-------~eAi~~~~~Al~~~p-~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 75 TTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP-------GLAREAFQTAIKMSY-ADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999987774 456666666666644 458999999999877644
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.61 E-value=5.2e-06 Score=90.45 Aligned_cols=189 Identities=19% Similarity=0.167 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch--HHHHHHhhhhhhhhcchhHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV--EEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~--~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
+.+|...|.+|++++|.++.+++++|.+|+..|+...-+. .++.++... |... ..+...+.... .-.
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~l~~Al~~~-p~~~~~~~~~~ll~~~~---------~~~ 353 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVA-QFEKALALD-PHSSNRDKWESLLKVNR---------YWL 353 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCccchhHHHHHHHhhh---------HHH
Confidence 4678999999999999999999999999999988775433 344444332 2211 11111111000 000
Q ss_pred HHHhhH--HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 224 LVDACE--ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 224 L~~~~e--EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
++..+. ....-+.+|.+.|+.|++++|++..|+++-|.++...+...+|.+. |+.++.+.+ ..+.++.++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~-------y~~aL~~~p-~~~~a~~~L 425 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERY-------YQQALRMDP-GNTNAVRGL 425 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCC-CCHHHHHHH
Confidence 000010 1112367788899999999999999999999988877775555555 555555423 346788877
Q ss_pred HHHHHH---------hhhcCCCCh---------------------HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 302 AVALQQ---------RSRLRPRNS---------------------KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 302 GlALqe---------rA~lr~~ss---------------------kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
|..+.. ..++.+... -....-+.+|+..|++||+++|+++.+.-.|..|-
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 776532 111111100 01122357899999999999999998877776665
Q ss_pred hh
Q 036322 352 SE 353 (360)
Q Consensus 352 ~e 353 (360)
..
T Consensus 506 ~~ 507 (1157)
T PRK11447 506 RQ 507 (1157)
T ss_pred HH
Confidence 43
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.61 E-value=3.4e-06 Score=87.25 Aligned_cols=190 Identities=16% Similarity=0.045 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhh-hhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGL-DYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~l-d~~~~~k~~~~~aL 224 (360)
+..|+..|.+|++++|+++.++.++|++|...|....-+. .++.++... |.+.........-+ ..+......+...+
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~-~~~~~~~~~-P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAIS-LARTQAQEV-PPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3468889999999999999999999999999888765433 233333222 21111111110000 00000000000000
Q ss_pred HHhh----H-----HHH-----HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 225 VDAC----E-----ECE-----ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 225 ~~~~----e-----EaE-----eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
+... + .+. .-+.+|.+.|+.+++++|++..++++-|.++...|...+|. .+|..-|+.++.+.
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~---~~A~~~~~~Al~l~ 280 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK---LQAAEHWRHALQFN 280 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH---HHHHHHHHHHHhhC
Confidence 0000 0 001 12356788899999999999999999999998866544432 35666677777754
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
+ ..+.++++.|..|...-+ +..|+..|++|++++|+++++...|..|...
T Consensus 281 P-~~~~a~~~lg~~l~~~g~------------~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 281 S-DNVRIVTLYADALIRTGQ------------NEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred C-CCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4 468899999988776542 4566677777777788877777666655443
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.56 E-value=4.6e-06 Score=84.20 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
.+|...|.+|++++|....++.++|.+|+..|+...-+. .+..++.-. |... ...+.+...
T Consensus 348 ~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~-~~~~al~~~-p~~~~~~~~lg~~~~~-------------- 411 (615)
T TIGR00990 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE-DFDKALKLN-SEDPDIYYHRAQLHFI-------------- 411 (615)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHH--------------
Confidence 367777888888888888888888888877776653222 233333221 2111 011111110
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
..-+.+|.+-|..|++++|+...++++.|.++...|.-.+|..+|..|++.+ +..|.++++.|.
T Consensus 412 --------~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~ 475 (615)
T TIGR00990 412 --------KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGE 475 (615)
T ss_pred --------cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHH
Confidence 0113445555556666666666666665555554444333333333332211 123444555444
Q ss_pred HHHHhhh-------------cCCCC----------------hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 304 ALQQRSR-------------LRPRN----------------SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 304 ALqerA~-------------lr~~s----------------skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++.+.-. +.|.. .-+...-+.+|...|++|+.++|++..+...|..|-..+
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 4443221 11110 001123567788899999999999988887777665443
No 10
>PRK12370 invasion protein regulator; Provisional
Probab=98.55 E-value=4.6e-06 Score=84.10 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH--------HHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcch
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL--------HFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNK 217 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl--------~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k 217 (360)
+.+|..+|.+|++++|.+..++.++|.+|+..+.... +....++.++.-. |..... ...
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a--~~~---------- 343 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQA--LGL---------- 343 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHH--HHH----------
Confidence 4588999999999999999999999999887665321 1122333444332 322111 000
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 218 DKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 218 ~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
++.++. ...-+.+|...|.+|++++|++..++|+-|.++...|.. .+|+.-|+.++.+.+ ..|.+
T Consensus 344 --lg~~~~-----~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~-------~eAi~~~~~Al~l~P-~~~~~ 408 (553)
T PRK12370 344 --LGLINT-----IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL-------EEALQTINECLKLDP-TRAAA 408 (553)
T ss_pred --HHHHHH-----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHhcCC-CChhh
Confidence 111111 112256788899999999999999999999998886664 445555555555533 23445
Q ss_pred HhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccC-CCchHHHHHHHhhhh
Q 036322 298 LFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMN-SDNLQVREALSSCMS 352 (360)
Q Consensus 298 L~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLd-pd~~qa~~Al~~c~~ 352 (360)
++..+.++-.. + -+++|+..|++++..+ |+++.+..-|..|-.
T Consensus 409 ~~~~~~~~~~~-----g-------~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~ 452 (553)
T PRK12370 409 GITKLWITYYH-----T-------GIDDAIRLGDELRSQHLQDNPILLSMQVMFLS 452 (553)
T ss_pred HHHHHHHHHhc-----c-------CHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 44433332211 1 1345555666666553 666665555554443
No 11
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.52 E-value=2.2e-06 Score=76.56 Aligned_cols=131 Identities=19% Similarity=0.224 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+++..|.++++.+|.+..+..++|.+|+..|+.
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~---------------------------------------------- 89 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY---------------------------------------------- 89 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------------------------------------------
Confidence 6777889999999999999999999888853222
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-ccc--hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF-LET--AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-~~~--a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
..|...|..|++++|++..++++.|.+|.. .+. ..+|.+++ +.++.+ +...+.++++.|.
T Consensus 90 ---------~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l-------~~al~~-dP~~~~al~~LA~ 152 (198)
T PRK10370 90 ---------DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI-------DKALAL-DANEVTALMLLAS 152 (198)
T ss_pred ---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH-------HHHHHh-CCCChhHHHHHHH
Confidence 345558999999999999999999999854 343 34455554 455554 3345899999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
++.++. -+++|+..|+++|.++|.+..-...| ..+..
T Consensus 153 ~~~~~g------------~~~~Ai~~~~~aL~l~~~~~~r~~~i-~~i~~ 189 (198)
T PRK10370 153 DAFMQA------------DYAQAIELWQKVLDLNSPRVNRTQLV-ESINM 189 (198)
T ss_pred HHHHcC------------CHHHHHHHHHHHHhhCCCCccHHHHH-HHHHH
Confidence 987654 46789999999999999988777666 33543
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.51 E-value=2.8e-06 Score=67.73 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=97.2
Q ss_pred HHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHH
Q 036322 151 RLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEE 230 (360)
Q Consensus 151 ~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eE 230 (360)
..|.++++++|.+..+...+|.++...|..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-------------------------------------------------- 33 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY-------------------------------------------------- 33 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccH--------------------------------------------------
Confidence 468899999999999999999777743221
Q ss_pred HHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 231 CEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 231 aEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
.+|-+.|..+++++|++..++++.|..+..-+.. .+|.+-|+.++...+ ..|+.+++-|..+...-
T Consensus 34 -----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g- 99 (135)
T TIGR02552 34 -----DEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-------EEAIDAYALAAALDP-DDPRPYFHAAECLLALG- 99 (135)
T ss_pred -----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcC-
Confidence 2333457788899999999999999888765554 445555555555433 45899999998876542
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-++.|...|+.+++++|+++...+....|...|
T Consensus 100 -----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 100 -----------EPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred -----------CHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 267788899999999999999888888776654
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.48 E-value=8.9e-06 Score=88.68 Aligned_cols=194 Identities=17% Similarity=0.184 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH---HHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ---KRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~---~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|.++|.+|++++|.+..|+.++|.+|+..|....-+. .++.++... |...... ..+... .+.++...
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL~~~-p~~~~a~~~L~~l~~~-----~~~~~A~~ 439 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQALRMD-PGNTNAVRGLANLYRQ-----QSPEKALA 439 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHh-----cCHHHHHH
Confidence 3468999999999999999999999999999888765433 345555433 3221111 111110 00111111
Q ss_pred HHHH--------------------hhHHH-----HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHH
Q 036322 223 LLVD--------------------ACEEC-----EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFS 277 (360)
Q Consensus 223 aL~~--------------------~~eEa-----EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~ 277 (360)
.+.. ....+ ..-+.+|.+.|+.|++++|++..++|+.|.++...+...+|.++|.
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1000 00111 1345788899999999999999999999999888888777777666
Q ss_pred HHHHHHHHHHhccCCChhHHHhhHHHHHHH----------hhhcC-----------------------------CCChHH
Q 036322 278 AAIDNFDAMMLKGNIYAPDALFGWAVALQQ----------RSRLR-----------------------------PRNSKE 318 (360)
Q Consensus 278 aA~dKY~AAl~~~n~~ap~AL~NWGlALqe----------rA~lr-----------------------------~~sskE 318 (360)
.+++.. + ..|++++.-|+.+.+ +.++. .+...+
T Consensus 520 ~al~~~-------P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 520 RLAQQK-------P-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHcC-------C-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 665422 1 234555544443221 11110 011122
Q ss_pred H-----------------------HHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 319 K-----------------------VKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 319 k-----------------------~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+ ..-.++|+..|++++.++|++++++.+|..|-..+
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2 22356799999999999999999999888776444
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.45 E-value=1.5e-05 Score=64.86 Aligned_cols=165 Identities=18% Similarity=0.106 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+++...|.+..+...+|.+|...|....-+. .++.++.-. |... .+. -.++..+.
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~-~~~~----~~~----------~~~~~~~~- 110 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAED-SFRRALTLN-PNNG----DVL----------NNYGTFLC- 110 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhC-CCCH----HHH----------HHHHHHHH-
Confidence 357778888899999999999999999998887764322 223333222 2111 010 01122222
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhC--CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSID--GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~d--p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
...-+.+|-+.|..+++.. |....++++.|.++...+...+|.++|..++... + ..+.+++.+|..
T Consensus 111 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~~~~~~la~~ 178 (234)
T TIGR02521 111 ----QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-------P-QRPESLLELAEL 178 (234)
T ss_pred ----HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c-CChHHHHHHHHH
Confidence 1234677888999999854 5677899999998888888766766666665432 2 347888888887
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 305 LQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 305 LqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
+..+- -+.+|...|++++.+.|+++...-.+..|..
T Consensus 179 ~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (234)
T TIGR02521 179 YYLRG------------QYKDARAYLERYQQTYNQTAESLWLGIRIAR 214 (234)
T ss_pred HHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 66433 3578999999999999999888776655543
No 15
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.43 E-value=1.5e-05 Score=74.38 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
..|...|.+|++++|.++.++.++|.+|...|+...-+.. ++.++.-. |... ...+.++...
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~-~~~Al~l~-P~~~~a~~~lg~~l~~~------------- 145 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA-FDSVLELD-PTYNYAYLNRGIALYYG------------- 145 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHhC-CCCHHHHHHHHHHHHHC-------------
Confidence 3667789999999999999999999999988887765443 33333221 2211 1112221111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhh------------------------------HHhHHHhhhcccchhcHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRA------------------------------LYNWGLALFFLETAFDAD 273 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~A------------------------------LYNWGlAL~~~~~a~eAe 273 (360)
.-+.+|.+-|..+++++|++... .++|+++....+...++
T Consensus 146 ---------g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~- 215 (296)
T PRK11189 146 ---------GRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEE- 215 (296)
T ss_pred ---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHH-
Confidence 11233333444444444443311 12244433333332222
Q ss_pred HHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCC-CchHHHHHHH
Q 036322 274 KIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNS-DNLQVREALS 348 (360)
Q Consensus 274 ~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdp-d~~qa~~Al~ 348 (360)
..+..+.+-++....+.+ ..++||++.|.++..+- -...|+..|+.|+.++| |+.+.+-|+.
T Consensus 216 ~~~~~~~~~~~~~~~l~~-~~~ea~~~Lg~~~~~~g------------~~~~A~~~~~~Al~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 216 TLMERLKAGATDNTELAE-RLCETYFYLAKYYLSLG------------DLDEAAALFKLALANNVYNFVEHRYALL 278 (296)
T ss_pred HHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 233333333322223221 23678888888876544 35678999999999996 9888888754
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.40 E-value=7.4e-06 Score=89.64 Aligned_cols=176 Identities=10% Similarity=-0.070 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhh--hhhhcchhHH---
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGL--DYQFMNKDKI--- 220 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~l--d~~~~~k~~~--- 220 (360)
+..|+..|.+++...|. ..++.++|++++..|....- .+.++.++... |...+....+...+ ..+.......
T Consensus 525 ~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA-~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 525 YATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAAR-DRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHH-HHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66778888887666444 56678888888888877642 23445555443 33322222221111 0111000000
Q ss_pred -------HHHHHHhhHHH--HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 221 -------ASLLVDACEEC--EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 221 -------~~aL~~~~eEa--EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
..+....+.-+ ..-+.+|.+.|+.|++++|++..+++|+|.+|...+...+|.. -|++++.+.|
T Consensus 602 AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~-------~l~~AL~l~P 674 (987)
T PRK09782 602 SLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE-------MLERAHKGLP 674 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHhCC
Confidence 00111111000 0224567778999999999999999999999999777544444 4555555534
Q ss_pred CChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 292 IYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 292 ~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
..|++++|.|.++..+-. +..|...|+.||.++|++.++.
T Consensus 675 -~~~~a~~nLA~al~~lGd------------~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 675 -DDPALIRQLAYVNQRLDD------------MAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred -CCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCCCCchhh
Confidence 569999999999866553 4567788999999999987665
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=98.40 E-value=3.3e-05 Score=78.05 Aligned_cols=164 Identities=17% Similarity=0.064 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|...+.+|++++|.++.|+..+|.+++..|+...-+ ..++.++.-. |.....+. .++.++.
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~-~~~~~Al~l~-P~~~~a~~--------------~lg~~l~ 383 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS-LLFKQANLLS-PISADIKY--------------YYGWNLF 383 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhC-CCCHHHHH--------------HHHHHHH
Confidence 468899999999999999999999999999988866432 2344444443 33221110 1122222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
..+ -+.+|..-|..|++++|.+..+.+..+.++...+. +.+|+.-|++++...+.+.|.++++-|.++
T Consensus 384 ~~G-----~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~-------~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 384 MAG-----QLEEALQTINECLKLDPTRAAAGITKLWITYYHTG-------IDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HCC-----CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC-------HHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 211 14567779999999999998887776665554443 355555566666554455689999999998
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
..+-+ .++|...|++++...|++..+...|..
T Consensus 452 ~~~G~------------~~eA~~~~~~~~~~~~~~~~~~~~l~~ 483 (553)
T PRK12370 452 SLKGK------------HELARKLTKEISTQEITGLIAVNLLYA 483 (553)
T ss_pred HhCCC------------HHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 76432 234555567777778887777776644
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.39 E-value=2.1e-05 Score=81.46 Aligned_cols=176 Identities=14% Similarity=0.047 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
..|...|.++++++|.++.++.++|++|...|....-+. .++.++.-. |.....+... +.++..
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~-~l~~Al~l~-P~~~~a~~~l--------------a~~l~~ 156 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD-LAEQAWLAF-SGNSQIFALH--------------LRTLVL 156 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCcHHHHHHH--------------HHHHHH
Confidence 467788888899999999999999988888887665332 344444332 2221111111 111110
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHH----------------------------HHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKI----------------------------FSA 278 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L----------------------------~~a 278 (360)
..-+.+|...|+.++..+|++..++++++. +...+...+|..+ +.+
T Consensus 157 -----~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 157 -----MDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred -----CCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 011234444555666666666666655433 2222222222211 345
Q ss_pred HHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 279 A~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
|+.-|++++...+ ..|+++++.|.++..+.+.. ++ ..+|...|+.|+.++|+++.+...+......
T Consensus 231 A~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~-----eA---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 231 AIQTGESALARGL-DGAALRRSLGLAYYQSGRSR-----EA---KLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCch-----hh---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 5666666666533 56899999999988866432 21 2579999999999999999998877655443
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.39 E-value=3.8e-05 Score=77.71 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
.+|++.|.+|++++|+...|++++|++|...|....
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 568889999999999999999999999999888653
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.38 E-value=1.4e-05 Score=87.62 Aligned_cols=215 Identities=11% Similarity=-0.018 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhcCCc--hHH-------H--HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 113 VMFDRYLTEANDLPKHAKECMKSGWD--EER-------A--EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 113 ~~f~~~v~ea~~Llk~are~~~~~~D--e~~-------A--d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
..+-....++.......+..+....+ ... . +.-..+|+..|.+++...|++.. ...+|.++...|+..
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~e 526 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHH
Confidence 44555556666666666666654222 111 1 22345688999999999998753 333454445566655
Q ss_pred HHHHHHHHHHhccCCCcchHHH---HHHhhhhhhhhcchhHHH-----------HHHHHhhHHHH---HHHHHHHHHHHH
Q 036322 182 LHFSCKLRRLLLEGDVISVEEQ---KRILKGLDYQFMNKDKIA-----------SLLVDACEECE---ELLVKAGRKYRL 244 (360)
Q Consensus 182 l~~s~~Lr~lla~~~p~s~~~~---~r~~~~ld~~~~~k~~~~-----------~aL~~~~eEaE---eLL~eAgrKY~~ 244 (360)
.-+. .++.++... |.. ..+ +.++.... ++.....+- ...... ..+. --+.+|..-|+.
T Consensus 527 eAi~-~~rka~~~~-p~~-~a~~~la~all~~G-d~~eA~~~l~qAL~l~P~~~~l~~~L-a~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 527 TALA-AWQKISLHD-MSN-EDLLAAANTAQAAG-NGAARDRWLQQAEQRGLGDNALYWWL-HAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHH-HHHHHhccC-CCc-HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCccHHHHHHH-HHHHHhCCCHHHHHHHHHH
Confidence 3322 344444332 221 111 11111110 111100000 000000 1111 346788899999
Q ss_pred HhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHH
Q 036322 245 ALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQ 324 (360)
Q Consensus 245 Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~ 324 (360)
|++++|+ ..+++|-|.++...|...+|...| +.++.+ ++..|++++|+|.+|.+.- -.+
T Consensus 602 AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l-------~~AL~l-~Pd~~~a~~nLG~aL~~~G------------~~e 660 (987)
T PRK09782 602 SLNIAPS-ANAYVARATIYRQRHNVPAAVSDL-------RAALEL-EPNNSNYQAALGYALWDSG------------DIA 660 (987)
T ss_pred HHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHH-------HHHHHh-CCCCHHHHHHHHHHHHHCC------------CHH
Confidence 9999997 999999999999888765555555 455554 3356899999999998853 246
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 325 QARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 325 qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+|+..|++||.++|+++++...|..|-..+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 788899999999999999997777665544
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.38 E-value=3.7e-05 Score=74.90 Aligned_cols=185 Identities=21% Similarity=0.134 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH---HHHH----------hhhhhhh
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE---QKRI----------LKGLDYQ 213 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~---~~r~----------~~~ld~~ 213 (360)
..|+..|.+++...|.++.+.+.+|.+|+..|+...-+. .++.++... |.+... .+++ +.-+...
T Consensus 39 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~ 116 (899)
T TIGR02917 39 KAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEK-ELRKALSLG-YPKNQVLPLLARAYLLQGKFQQVLDELPGK 116 (899)
T ss_pred HhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcC-CChhhhHHHHHHHHHHCCCHHHHHHhhccc
Confidence 356888999999999999999999999999888765433 344444333 322111 1111 1111110
Q ss_pred h-cchhHHHHHHHHhhH--HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 214 F-MNKDKIASLLVDACE--ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 214 ~-~~k~~~~~aL~~~~e--EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
. ........++...+. ....-+.+|.+.|..+++.+|++..++++-|..+...+...+|.+++.++++. .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~ 189 (899)
T TIGR02917 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA-------D 189 (899)
T ss_pred ccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHh-------C
Confidence 0 011111111111111 11234678899999999999999999999999888888877777777766543 2
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
+ ..+.+++..|..+.... -+.+|...|+.++.++|+++.+...+..|...
T Consensus 190 ~-~~~~~~~~~~~~~~~~g------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 190 P-GNVDALLLKGDLLLSLG------------NIELALAAYRKAIALRPNNPAVLLALATILIE 239 (899)
T ss_pred C-CChHHHHHHHHHHHhcC------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 2 34678877776654322 24567888888888899888887776666543
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.33 E-value=6.1e-06 Score=78.85 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.|-+-+++||+.+|++..|.--++-.|...|+.
T Consensus 53 ~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----------------------------------------------- 85 (250)
T COG3063 53 QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----------------------------------------------- 85 (250)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-----------------------------------------------
Confidence 455667899999999999887666555543332
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh-HHHhhHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP-DALFGWAVALQ 306 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap-~AL~NWGlALq 306 (360)
+.|.+.|+.|++++|++-+.|-|.|.-||.-|. |.+|-.-|++|+..+..+.| +.|-|-|+-
T Consensus 86 --------~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~-------~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C-- 148 (250)
T COG3063 86 --------DLADESYRKALSLAPNNGDVLNNYGAFLCAQGR-------PEEAMQQFERALADPAYGEPSDTLENLGLC-- 148 (250)
T ss_pred --------hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC-------hHHHHHHHHHHHhCCCCCCcchhhhhhHHH--
Confidence 335669999999999999999999999999665 46677777788886665544 888898875
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
.++.+ =..+|...|+.+|.+||++|-++..+.
T Consensus 149 ---al~~g-------q~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 149 ---ALKAG-------QFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred ---HhhcC-------CchhHHHHHHHHHHhCcCCChHHHHHH
Confidence 33433 356788899999999999999887664
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.32 E-value=1.2e-05 Score=74.87 Aligned_cols=34 Identities=15% Similarity=-0.085 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCc---C-ChHHHhhhhhhHHHHHHHH
Q 036322 148 KSARLLSQAIAMQH---M-SLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P---~-s~~Avgn~GNalL~~GeLK 181 (360)
.++..|+++|+..| . .+.++++.|++|...|...
T Consensus 44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~ 81 (296)
T PRK11189 44 VILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRA 81 (296)
T ss_pred HHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHH
Confidence 45667777886444 3 3666888888777655544
No 24
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.26 E-value=7.6e-06 Score=79.03 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
.-+..|.+.|..||+++|++..+++|-|.++...+.. .+|+.-|+.++.+.+ ..+.+|++.|.++..+-
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~-------~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg--- 84 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF-------TEAVADANKAIELDP-SLAKAYLRKGTACMKLE--- 84 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC---
Confidence 3456788899999999999999999999999887764 555555666666533 56899999999987653
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.||.++|+++++..-+..|...|.
T Consensus 85 ---------~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 ---------EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred ---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999977663
No 25
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.08 E-value=0.0004 Score=67.79 Aligned_cols=198 Identities=11% Similarity=0.005 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhhhcchhHH-H
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQFMNKDKI-A 221 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~~~~k~~~-~ 221 (360)
..+|...|.+++.+.|.+..+...+++.|...|....-+. -+..+... .|..... .+.+..... ......+. .
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~ 727 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK-IAKSLQKQ-HPKAALGFELEGDLYLRQK-DYPAAIQAYR 727 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhh-CcCChHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 4678899999999999999999999999998887653321 12222222 2322111 122211110 00000000 0
Q ss_pred ---------HHHHHhh--HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 222 ---------SLLVDAC--EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 222 ---------~aL~~~~--eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
..+...+ -....-+.+|.+.|..+++.+|+++.++++.|..+...|...+|..+|..+++++
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------- 800 (899)
T TIGR02917 728 KALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA------- 800 (899)
T ss_pred HHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-------
Confidence 0000000 0000123567778888888999999999999988887777655555555554432
Q ss_pred CCChhHHHhhHHHHHHHhhh------------cCCCChH---------HHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 291 NIYAPDALFGWAVALQQRSR------------LRPRNSK---------EKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~------------lr~~ssk---------Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
+ ..|.++++-|..+..+-. +.|.+.. ....-+..|...|+.||.++|+++.+...|..
T Consensus 801 p-~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 801 P-DNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred C-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 2 235666665555443211 1111100 01112456888889999999999988887776
Q ss_pred hhhhc
Q 036322 350 CMSEL 354 (360)
Q Consensus 350 c~~el 354 (360)
|....
T Consensus 880 ~~~~~ 884 (899)
T TIGR02917 880 ALLAT 884 (899)
T ss_pred HHHHc
Confidence 65543
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.08 E-value=0.00027 Score=57.67 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+++++.|.+..++.++|.+|...|....-+. -++.++.....+ ....+. ..++.++.
T Consensus 82 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~~~~~~~~~---~~~~~~----------~~l~~~~~- 146 (234)
T TIGR02521 82 EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ-QFEQAIEDPLYP---QPARSL----------ENAGLCAL- 146 (234)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH-HHHHHHhccccc---cchHHH----------HHHHHHHH-
Confidence 468889999999999999999999999999887765432 223333221100 000000 01111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
...-+.+|.+.|..++..+|++..+++++|.++...+...+|..++.++.+. .+ ..|..+...+..
T Consensus 147 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~-~~~~~~~~~~~~ 212 (234)
T TIGR02521 147 ----KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-------YN-QTAESLWLGIRI 212 (234)
T ss_pred ----HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CC-CCHHHHHHHHHH
Confidence 1123577888999999999999999999999988888876676666655443 22 346777644443
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.00 E-value=0.0009 Score=61.92 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|...|.++++.+|.+..++..+|+.|...|....-+. .++.++... +........+.. .++..+..
T Consensus 52 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~~-~~~~~~~~~~~~----------~La~~~~~ 119 (389)
T PRK11788 52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIR-IHQNLLSRP-DLTREQRLLALQ----------ELGQDYLK 119 (389)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHH-HHHHHhcCC-CCCHHHHHHHHH----------HHHHHHHH
Confidence 358899999999999999999999999998887764322 334444421 111111111111 12222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
. .-+..|-+.|..+++.+|.+..++.+-+.++...+.-.+|..+|..++
T Consensus 120 ~-----g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 120 A-----GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred C-----CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 1 124556666777777788888888877777766655555554444443
No 28
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=0.00011 Score=71.12 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=85.1
Q ss_pred HhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH
Q 036322 122 ANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE 201 (360)
Q Consensus 122 a~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~ 201 (360)
+.+|+++|.+....++ +..|+.+|.+||+++|.++.+++++|.+|+..|..
T Consensus 2 ~~~l~~~a~~a~~~~~--------~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~--------------------- 52 (356)
T PLN03088 2 AKDLEDKAKEAFVDDD--------FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF--------------------- 52 (356)
T ss_pred cHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------
Confidence 3457777777766553 45788999999999999999999999888864322
Q ss_pred HHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH
Q 036322 202 EQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID 281 (360)
Q Consensus 202 ~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d 281 (360)
.+|..-|..|+.++|+...++++-|+++...|. |.+|+.
T Consensus 53 ----------------------------------~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-------~~eA~~ 91 (356)
T PLN03088 53 ----------------------------------TEAVADANKAIELDPSLAKAYLRKGTACMKLEE-------YQTAKA 91 (356)
T ss_pred ----------------------------------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC-------HHHHHH
Confidence 334456788899999999999999998887666 455666
Q ss_pred HHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 282 NFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 282 KY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
-|++++.+.+ ..+++.+..+.....+.
T Consensus 92 ~~~~al~l~P-~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 92 ALEKGASLAP-GDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 6666666533 34676666666655553
No 29
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.96 E-value=0.00035 Score=74.32 Aligned_cols=177 Identities=13% Similarity=0.042 Sum_probs=113.2
Q ss_pred HhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH
Q 036322 122 ANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE 201 (360)
Q Consensus 122 a~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~ 201 (360)
+..+++|++|.++.-.-.--++..|.++ ..-+..-|.+.+|+.+||-++..+|++-- -++-|++++.-. |....
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~La~i~~~~g~~~e-a~~~l~~~~~~~-Pd~~~ 121 (694)
T PRK15179 48 GRELLQQARQVLERHAAVHKPAAALPEL----LDYVRRYPHTELFQVLVARALEAAHRSDE-GLAVWRGIHQRF-PDSSE 121 (694)
T ss_pred HHHHHHHHHHHHHHhhhhcchHhhHHHH----HHHHHhccccHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhhC-CCcHH
Confidence 3788889988876543332222222221 12233368889999999998888877642 222345555433 43332
Q ss_pred HHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH
Q 036322 202 EQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID 281 (360)
Q Consensus 202 ~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d 281 (360)
.+... +.+|.. +.=+.+|..-++++++.+|+...++++=|.+|..-|.-. +|++
T Consensus 122 a~~~~--------------a~~L~~-----~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~-------~A~~ 175 (694)
T PRK15179 122 AFILM--------------LRGVKR-----QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE-------QADA 175 (694)
T ss_pred HHHHH--------------HHHHHH-----hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH-------HHHH
Confidence 21111 111111 122455666888999999999999999999999988754 4555
Q ss_pred HHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHH
Q 036322 282 NFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQV 343 (360)
Q Consensus 282 KY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa 343 (360)
=|+.++. +++..|+|+.+||.+|..+-+ ...|+..|++||.+..+..-.
T Consensus 176 ~y~~~~~-~~p~~~~~~~~~a~~l~~~G~------------~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 176 CFERLSR-QHPEFENGYVGWAQSLTRRGA------------LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHh-cCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhCcchHH
Confidence 5555555 455679999999999877653 345777888888887776643
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.96 E-value=7.7e-05 Score=56.95 Aligned_cols=97 Identities=22% Similarity=0.210 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|.+.|..+++.+|++ ..+++++|.++...+...+|..+|..+...|- .+...|.++++.|.++...
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~~~~~~~~~--- 89 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-----KSPKAPDALLKLGMSLQEL--- 89 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-----CCCcccHHHHHHHHHHHHh---
Confidence 456777888888888876 57999999999988877777777777766552 2334589999999997643
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
.-..+|...|+.++...|+++.+..|+.
T Consensus 90 ---------~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 90 ---------GDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred ---------CChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 2457788899999999999999998853
No 31
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.95 E-value=0.00016 Score=61.29 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|..-|+.|+.+.|+. ..+++|.|+++...+...+|.+.|.. ++.+.+ ..+.++++.|..+..++++
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~-------Al~~~~-~~~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ-------ALERNP-FLPQALNNMAVICHYRGEQ 122 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHhCc-CcHHHHHHHHHHHHHhhHH
Confidence 567777888998886653 35999999999987776555555544 444433 3478999999999988742
Q ss_pred --CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 312 --RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 312 --r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
.-+...++...+.+|...|++++.++|++-.-..-.-.|+.+
T Consensus 123 ~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 123 AIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 333467888999999999999999999877666555566544
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.92 E-value=0.00098 Score=61.68 Aligned_cols=179 Identities=18% Similarity=0.090 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH-HHHHHhhhhhhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE-EQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~-~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
+.+|.+.|.++++.+|.+..++.+++++|...|+...-+. .++.++... |.... ....... .++..+
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~~~~~----------~la~~~ 190 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAID-VAERLEKLG-GDSLRVEIAHFYC----------ELAQQA 190 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHH-HHHHHHHhc-CCcchHHHHHHHH----------HHHHHH
Confidence 3467788899999999999999999999999888764332 233333322 21110 0000000 011111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
.. ..-+.+|.+-|..+++++|+...+++.-|.++...+...+|.++|.++.++. +.+.+.+++..|.+
T Consensus 191 ~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~~l~~~ 258 (389)
T PRK11788 191 LA-----RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD-------PEYLSEVLPKLMEC 258 (389)
T ss_pred Hh-----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------hhhHHHHHHHHHHH
Confidence 10 1234667777888888899999999998888888777777777777766531 11223333343333
Q ss_pred HHHhhh-------------cCCCCh--------HHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 305 LQQRSR-------------LRPRNS--------KEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 305 LqerA~-------------lr~~ss--------kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
+..... +.|... -.+..-+.+|...|++++..+|+++....-+.
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 322211 122211 01112255788888888888888876554333
No 33
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=9.2e-05 Score=78.65 Aligned_cols=116 Identities=10% Similarity=-0.004 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|...+..+++++|++..|..+++++|...+++-.- ..+.+.+|+.. |.+... .-..+.+|++
T Consensus 103 ~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA-~~~~~~~l~~~-p~~~~~--------------~~~~a~~l~~ 166 (694)
T PRK15179 103 DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAG-RAEIELYFSGG-SSSARE--------------ILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHH-HHHHHHHhhcC-CCCHHH--------------HHHHHHHHHH
Confidence 4577899999999999999999999999987665532 22446666554 544311 1123444554
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
.++ +.+|..-|+.++..+|+++.|+++||.+|...|...+|...|.+|++-+
T Consensus 167 ~g~-----~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 167 IGQ-----SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred hcc-----hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 331 2445668999999999999999999999999999999999999997655
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.70 E-value=0.00082 Score=60.93 Aligned_cols=100 Identities=24% Similarity=0.190 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
..+|.+-|+.|++++|++.+++.+++..|.+.|...+ ..+++++|.+... ..|..+...|.++..+..
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~----~~~~l~~~~~~~~----~~~~~~~~la~~~~~lg~---- 229 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE----AREALKRLLKAAP----DDPDLWDALAAAYLQLGR---- 229 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH----HHHHHHHHHHH-H----TSCCHCHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH----HHHHHHHHHHHCc----CHHHHHHHHHHHhccccc----
Confidence 3667789999999999999999999999988666544 4566677765542 236777778888776652
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-++|...|+.++..+|++|.++..+..+....
T Consensus 230 --------~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 230 --------YEEALEYLEKALKLNPDDPLWLLAYADALEQA 261 (280)
T ss_dssp --------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred --------cccccccccccccccccccccccccccccccc
Confidence 35789999999999999999999988776544
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.67 E-value=0.002 Score=67.99 Aligned_cols=98 Identities=13% Similarity=-0.038 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+++|.++++++|.++.+...+|.+++..|....-+ ..|+.++... |.... +- .++.++.
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~-~~l~~~l~~~-P~~~~-~~--------------~la~~l~ 127 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL-VKAKQLVSGA-PDKAN-LL--------------ALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhC-CCCHH-HH--------------HHHHHHH
Confidence 457899999999999999999999999999887776432 3455555442 43321 11 1111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
...-+.+|...|..+++++|++..+++++|.++..
T Consensus 128 -----~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 128 -----RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred -----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 12334678889999999999999999999998865
No 36
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0013 Score=56.25 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc-
Q 036322 236 VKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL- 311 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l- 311 (360)
.+|...|..|+++.|+. ..+++|.|.++...|.-.+|...|.+| +...+ ..+.++++.|.++......
T Consensus 52 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p-~~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 52 AEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA-------LELNP-KQPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCc-ccHHHHHHHHHHHHHcCChH
Confidence 45667788888777654 468999999998877755555555544 44323 3489999999999887653
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 312 -RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 312 -r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
..+...++...+.+|...|+.++.++|++-+..
T Consensus 124 ~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~ 157 (172)
T PRK02603 124 EEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEA 157 (172)
T ss_pred hHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHH
Confidence 122467888899999999999999999985433
No 37
>PLN02789 farnesyltranstransferase
Probab=97.57 E-value=0.011 Score=57.39 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH---HHHhc-cCCCcchHH-HHHHhhhhhhhhcchhHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL---RRLLL-EGDVISVEE-QKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L---r~lla-~~~p~s~~~-~~r~~~~ld~~~~~k~~~~~ 222 (360)
+|..++.++|+++|++..|...-|.+|...|. .+..+| ..++. +...+.+-. ++.++..+..
T Consensus 55 rAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~---~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~---------- 121 (320)
T PLN02789 55 RALDLTADVIRLNPGNYTVWHFRRLCLEALDA---DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP---------- 121 (320)
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHcch---hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc----------
Confidence 67888999999999999999999998887652 222333 23332 222221211 2223332210
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
..+.++-.-+..++++||..+.|.++=|.+|..-+ .|.+|++=|+.++.. ++..+.|+++=|
T Consensus 122 ----------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~-------~~~eeL~~~~~~I~~-d~~N~sAW~~R~ 183 (320)
T PLN02789 122 ----------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG-------GWEDELEYCHQLLEE-DVRNNSAWNQRY 183 (320)
T ss_pred ----------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH-CCCchhHHHHHH
Confidence 11223445577999999999999999999888743 388999999999986 556689999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
..+..+-.+.+. + ..+..++.+..++|.++|+|..+-
T Consensus 184 ~vl~~~~~l~~~---~--~~~e~el~y~~~aI~~~P~N~SaW 220 (320)
T PLN02789 184 FVITRSPLLGGL---E--AMRDSELKYTIDAILANPRNESPW 220 (320)
T ss_pred HHHHhccccccc---c--ccHHHHHHHHHHHHHhCCCCcCHH
Confidence 998764222111 1 245567777888888888887664
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.0012 Score=70.20 Aligned_cols=147 Identities=23% Similarity=0.231 Sum_probs=104.2
Q ss_pred HHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHH
Q 036322 157 IAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLV 236 (360)
Q Consensus 157 l~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~ 236 (360)
+..+|.+|+..--+||.|.+.++=...+-.-.|+.- || -+..++-.|.++=--.-+=+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----------------ld----p~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----------------LD----PRFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----------------cC----CccchhhhhcCChhhhhHHHH
Confidence 466888888888889988876554433333222211 11 122345555544333344567
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
-|.+.||.||.+||..+.|.||-|.+-.-.+- |+.|-=-|..|+.+ |+..-..++-.|..+.++
T Consensus 473 ~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek-------~e~Ae~~fqkA~~I-NP~nsvi~~~~g~~~~~~-------- 536 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK-------LEFAEFHFQKAVEI-NPSNSVILCHIGRIQHQL-------- 536 (638)
T ss_pred hHHHHHHhhhcCCchhhHHHHhhhhheeccch-------hhHHHHHHHhhhcC-CccchhHHhhhhHHHHHh--------
Confidence 79999999999999999999999988766333 46777788888987 545678888888886544
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
+.-.+|.+.|++|+.|||-+|-.+
T Consensus 537 ----k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 537 ----KRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred ----hhhhHHHHHHHHHHhcCCCCchhH
Confidence 456789999999999999998643
No 39
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.46 E-value=0.0034 Score=57.56 Aligned_cols=161 Identities=16% Similarity=-0.025 Sum_probs=87.3
Q ss_pred cCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH-HHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHH
Q 036322 159 MQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE-QKRILKGLDYQFMNKDKIASLLVDACEECEELLVK 237 (360)
Q Consensus 159 ~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~-~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~e 237 (360)
.+|+...++-.+|..|...|.........++..-.. |...+. ....++++-. ...+ -+.+
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~a~~~-------------~~~g----~~~~ 61 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL--AARATERERAHVEALSA-------------WIAG----DLPK 61 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh--ccCCCHHHHHHHHHHHH-------------HHcC----CHHH
Confidence 379999999999988887665444322211111111 111111 1112222211 1111 1245
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChH
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSK 317 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ssk 317 (360)
|.+.|..+++.+|++..++++ ++++...+....+.....+++++ ... .+...+.++.+.|..+...-
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~---~~~-~~~~~~~~~~~~a~~~~~~G-------- 128 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL---WAP-ENPDYWYLLGMLAFGLEEAG-------- 128 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc---cCc-CCCCcHHHHHHHHHHHHHcC--------
Confidence 667788889999999988887 66665533333333334444443 111 12222445555555543322
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 318 EKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 318 Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
.+.+|...|++++.++|+++.+...+..+.-+.+
T Consensus 129 ----~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 129 ----QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred ----CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 3456777888888888888887777766665544
No 40
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.44 E-value=0.00077 Score=48.80 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=54.2
Q ss_pred chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 252 DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 252 d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
+..++++.|..+...+. |.+|+.-|+.++.+.+ ..+.++++.|+++..+. +-+.+|+..|+
T Consensus 2 ~a~~~~~~g~~~~~~~~-------~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~-----------~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD-------YEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLG-----------KDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTT-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhC-----------ccHHHHHHHHH
Confidence 45678888888887655 6777777887777644 56999999999987765 15778999999
Q ss_pred HhhccCC
Q 036322 332 DALHMNS 338 (360)
Q Consensus 332 ~ALrLdp 338 (360)
.||.+||
T Consensus 63 ~al~l~P 69 (69)
T PF13414_consen 63 KALKLDP 69 (69)
T ss_dssp HHHHHST
T ss_pred HHHHcCc
Confidence 9999998
No 41
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.0072 Score=62.33 Aligned_cols=129 Identities=11% Similarity=0.006 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|..+|++|++++|+...|+.-++-+|..+.. . .|..
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~------------~---~~~~-------------------------- 396 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHS------------Q---QPLD-------------------------- 396 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh------------c---CCcc--------------------------
Confidence 4579999999999999999999888866654211 0 0100
Q ss_pred HhhHHHHHHHHHHHHHHHHHhh--hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 226 DACEECEELLVKAGRKYRLALS--IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~--~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
+.-+..|.+..++|+. .+|.+..++.-.|+.....+. +.+|..-|++|+.+.+ + ..+|+.-|.
T Consensus 397 ------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~-------~~~A~~~l~rAl~L~p-s-~~a~~~lG~ 461 (517)
T PRK10153 397 ------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK-------TDEAYQAINKAIDLEM-S-WLNYVLLGK 461 (517)
T ss_pred ------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCC-C-HHHHHHHHH
Confidence 0011222222334444 467676666666665443433 4667777777777633 2 567777676
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
++-... -.++|+..|+.|++|+|.+|.
T Consensus 462 ~~~~~G------------~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 462 VYELKG------------DNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHcC------------CHHHHHHHHHHHHhcCCCCch
Confidence 643222 345688999999999999874
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.32 E-value=0.0085 Score=63.33 Aligned_cols=129 Identities=10% Similarity=0.014 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
+|++.|.+++..+|.+..++-++|.++...|.... ....++.++... |.....+ . .++.+++.
T Consensus 33 ~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~-A~~~~~~al~~~-P~~~~a~----~----------~la~~l~~- 95 (765)
T PRK10049 33 EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQN-SLTLWQKALSLE-PQNDDYQ----R----------GLILTLAD- 95 (765)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC-CCCHHHH----H----------HHHHHHHH-
Confidence 34478889988889999999999999999888774 333456666554 4332111 1 12222221
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
..-+.+|...++.++..+|++.. ++.-|.++...+...+|...|.+|++ +.+ ..+++++.+|.++.
T Consensus 96 ----~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~-------~~P-~~~~~~~~la~~l~ 161 (765)
T PRK10049 96 ----AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP-------RAP-QTQQYPTEYVQALR 161 (765)
T ss_pred ----CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-------hCC-CCHHHHHHHHHHHH
Confidence 13345677788899999999999 99999999887776666555555544 323 45888888888775
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.31 E-value=0.015 Score=50.90 Aligned_cols=145 Identities=11% Similarity=0.015 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCcCCh---HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH-HHHHHhhhhhhhhcchhHHHH
Q 036322 147 HKSARLLSQAIAMQHMSL---LAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE-EQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~---~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~-~~~r~~~~ld~~~~~k~~~~~ 222 (360)
..|+..|.+++.+.|.++ .|.+++|++|...|+...-+. .+..++... |.+.. .......| .
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~-~~~~~l~~~-p~~~~~~~a~~~~g------------~ 115 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIA-AADRFIRLH-PNHPDADYAYYLRG------------L 115 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHC-cCCCchHHHHHHHH------------H
Confidence 356778999999999987 688999999999887775433 234444332 21110 00001111 1
Q ss_pred HHHHh---hHHHHHHHHHHHHHHHHHhhhCCCchhh---H--------------HhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 223 LLVDA---CEECEELLVKAGRKYRLALSIDGNDVRA---L--------------YNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 223 aL~~~---~eEaEeLL~eAgrKY~~Al~~dp~d~~A---L--------------YNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
..... +..-..-+..|.+.|..++..+|+...+ + +++|......|...+|...|..+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 116 SNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11100 0000134677888899999999987544 2 23333333345544444444444444
Q ss_pred HHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 283 FDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 283 Y~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
|. ...+.++|+++-|.++..+..
T Consensus 196 ~p-----~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 196 YP-----DTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred CC-----CCcchHHHHHHHHHHHHHcCC
Confidence 32 123457999999998776553
No 44
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.29 E-value=0.0045 Score=49.36 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=74.7
Q ss_pred HHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHH
Q 036322 239 GRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKE 318 (360)
Q Consensus 239 grKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskE 318 (360)
|.-|..+++.+|++..++++=|..+...+...+|..+ |+.++...+ ..|.++++.|..+...-
T Consensus 3 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~p-~~~~~~~~la~~~~~~~--------- 65 (135)
T TIGR02552 3 GATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKL-------FQLLAAYDP-YNSRYWLGLAACCQMLK--------- 65 (135)
T ss_pred chhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHH-------HHHHHHhCC-CcHHHHHHHHHHHHHHH---------
Confidence 4578999999999999999888888776665555444 555555434 45899999998865442
Q ss_pred HHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 319 KVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 319 k~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.++.++|+++++.--+..|-..+.
T Consensus 66 ---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 66 ---EYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred ---HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 4678999999999999999999888887765543
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.24 E-value=0.0041 Score=55.73 Aligned_cols=102 Identities=10% Similarity=0.071 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.++...|+.++..+|++..+.++=|..+...+.. ..|++-|+.++.+.+ ..+++++++|.+|-.... .
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~-------~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g---~- 123 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY-------DNALLAYRQALQLRG-ENAELYAALATVLYYQAG---Q- 123 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC---C-
Confidence 4556689999999999999999999888776664 556666667777644 569999999998743321 0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
....+|...|++|++++|+++.++--|..+--++
T Consensus 124 -----~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 124 -----HMTPQTREMIDKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred -----CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence 0246788999999999999999988777665543
No 46
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.24 E-value=0.0017 Score=58.52 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
|.+|.+-|+..+.+||..++-+||+|.+... -.-|.+||+=|..+..+. ++.|.+++|-|..+-.+-.
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-------~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~---- 118 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQA-------QKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN---- 118 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC----
Confidence 5678888999999999999999999988874 555888999998887764 4679999999988654432
Q ss_pred ChHHHHHHHHHHHHHHHHhhccC---CCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMN---SDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLd---pd~~qa~~Al~~c~~el 354 (360)
...|...|+.||.+- |.+.+.++=-.....-|
T Consensus 119 --------~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 119 --------VCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred --------HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 356889999998876 55555555444444433
No 47
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.16 E-value=0.00027 Score=47.77 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 152 LLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 152 ~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
+|.+||+++|.++.|++|||++|+..|+...
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHh
Confidence 5899999999999999999999999887653
No 48
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.13 E-value=0.018 Score=52.92 Aligned_cols=116 Identities=16% Similarity=-0.023 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHH--hccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRL--LLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~l--la~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
.|.+.+.++++..|.+..++.+ +.++...|....+.....+.+ .....|..... .. .++.
T Consensus 61 ~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~------------~~a~--- 122 (355)
T cd05804 61 KALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYL--LG------------MLAF--- 122 (355)
T ss_pred HHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHH--HH------------HHHH---
Confidence 5688899999999999988887 766666665433322211111 11111211100 00 0011
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
+-...--+.+|.+.|+.+++++|++.-++++.|.++...+...+|..++..+.+-.
T Consensus 123 --~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 123 --GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred --HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 11111225778889999999999999999999999988888777777777665543
No 49
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.0055 Score=60.49 Aligned_cols=170 Identities=18% Similarity=0.157 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHH
Q 036322 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 144 ~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
.-|.-+++|++.++..+|++... ..|++++.-=+.+ .+ .|......+ .-+++.+++ |. .+.-
T Consensus 29 esleva~qc~e~~f~~~~~~~~~--~~~~~~l~~~~~~-----------~~-~~~~~~~~~-e~~~~AE~L--K~-eGN~ 90 (304)
T KOG0553|consen 29 ESLEVAIQCLEAAFGFRRDDVDR--AEGTTLLDSFESA-----------ER-HPVEILTPE-EDKALAESL--KN-EGNK 90 (304)
T ss_pred hHHHHhHHHHHHHhCcchhhccc--cccccHHHHHHHh-----------cc-CcccccChH-hHHHHHHHH--HH-HHHH
Confidence 35678999999999998876542 3345444311111 01 111000000 122222222 11 0111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
+ -.+..|.+|-.+|-.||.++|++.==|-|=+.|++.-|- |..|++--+.++.+ +.+.-.||-+.|+
T Consensus 91 ~-----m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~-------~~~AVkDce~Al~i-Dp~yskay~RLG~ 157 (304)
T KOG0553|consen 91 L-----MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE-------YEDAVKDCESALSI-DPHYSKAYGRLGL 157 (304)
T ss_pred H-----HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc-------hHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 1 124789999999999999999999999999999887442 45566666677776 4444699999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhccc
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNH 356 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~~ 356 (360)
|+..+-+ .+.|++.|.+||.|+|+++..+..|.--.-.|+.
T Consensus 158 A~~~~gk------------~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 158 AYLALGK------------YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHccCc------------HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9876653 3457888999999999999999998866555543
No 50
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.07 E-value=0.0055 Score=46.77 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
.+|.+.|..++..+|+. ..++++.|.++...+...+|.+++.+++++|
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 56 ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 44556777788887774 6789999999888888888888888888876
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.04 E-value=0.0079 Score=52.62 Aligned_cols=105 Identities=10% Similarity=-0.030 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhhCCCch---hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDV---RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~---~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+..|...|..++...|++. +|+|+=|.++...+...+|...|..++++|. .++..+.+++.-|..+.+....
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-----NHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CCCchHHHHHHHHHHHHHhccc
Confidence 5677889999999999876 6888888888877776666666666665553 2344566899999988765211
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
......-..+|+..|+.++..+|+++.+..++.
T Consensus 124 ----~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 124 ----VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred ----ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 112234588999999999999999988776654
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0049 Score=64.36 Aligned_cols=87 Identities=25% Similarity=0.339 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhc------------------ccch---------hcHHHHHHHHHHHHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFF------------------LETA---------FDADKIFSAAIDNFDAMML 288 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~------------------~~~a---------~eAe~L~~aA~dKY~AAl~ 288 (360)
..|+..||.|+.+||.|++|-||-|=|-.- |-+. .+.---..+||+=|..++.
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 467889999999999999999999865433 2221 1111224679999999888
Q ss_pred ccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhc
Q 036322 289 KGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALH 335 (360)
Q Consensus 289 ~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALr 335 (360)
.+++. ..||+..|-...+ ..-+.+|+.+|++-|.
T Consensus 461 ~~dte-~~~l~~LakLye~------------l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 461 LGDTE-GSALVRLAKLYEE------------LKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccccc-hHHHHHHHHHHHH------------HHhHHHHHHHHHHHHH
Confidence 87763 5677776666544 4456667777777665
No 53
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.93 E-value=0.012 Score=39.79 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+++...|.++.+..++|++|...|..
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 50 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY--------------------------------------------- 50 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 45677778888888888887777777776653322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
..|.+.|..++.+.|.+..+++++|.++...+....|...+..++
T Consensus 51 ----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 51 ----------EEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred ----------HHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 233345666666777777777777777766555555555554443
No 54
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.92 E-value=0.015 Score=52.51 Aligned_cols=28 Identities=18% Similarity=0.020 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
|...|..|+.++|+|+++++|=|.++-.
T Consensus 88 AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 88 AIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 4444555555555555555555544443
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.92 E-value=0.0065 Score=55.13 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.++|.+|++++|+++.+...++.+|...|.-+. .-..|..+.... |.+.. + -..++.+...
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~-~~~~l~~~~~~~-~~~~~------------~--~~~la~~~~~ 226 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE-AREALKRLLKAA-PDDPD------------L--WDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH-HHHHHHHHHHH--HTSCC------------H--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHHHC-cCHHH------------H--HHHHHHHhcc
Confidence 578999999999999999999999999998776553 111222222221 11100 0 1122333332
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
. .-..+|-.-|+.++..+|+|+..+.+-|-+|...|...+|.++..+|..+
T Consensus 227 l-----g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 227 L-----GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp H-----T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred c-----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 12467778899999999999999999999999999999999988887654
No 56
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.0025 Score=67.13 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
++|...|++|+++.|+-+++=||=||.-+--|.=+||-+-|..|+
T Consensus 481 ~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 481 EEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 677889999999999999999999999888777555555555554
No 57
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.25 Score=52.31 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
=+..|.+.|-.||.++|+|+++|-|=++++.--+....|-+=.+ .++++ +...+.+|.+=|.+|.
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~-------~~ieL-~p~~~kgy~RKg~al~------- 437 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK-------KCIEL-DPNFIKAYLRKGAALR------- 437 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH-------HHHhc-CchHHHHHHHHHHHHH-------
Confidence 36789999999999999999999998877766333322222122 33333 4445788888888853
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
..+-+..|...|++|+.+||++..+...+..|..-.
T Consensus 438 -----~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 438 -----AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred -----HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 445688899999999999999999999999998744
No 58
>PRK11906 transcriptional regulator; Provisional
Probab=96.78 E-value=0.033 Score=57.66 Aligned_cols=140 Identities=12% Similarity=0.101 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHH---HcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHH
Q 036322 145 ILHKSARLLSQAI---AMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 145 lL~~Aa~~~s~Al---~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~ 221 (360)
-+..|..+|.+|+ +++|+...|++-++-++..+ ..+.-+++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~------------~~~g~~~~~----------------------- 317 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL------------ALHGKSELE----------------------- 317 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH------------HHhcCCCch-----------------------
Confidence 4567888999999 99999999999998777642 111111110
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 222 SLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 222 ~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
.-..+|-+-=++|+++||+|+.|++-=|.++...+.. ..|+.-|++|+.+ +++.++++|--
T Consensus 318 -----------~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~-------~~a~~~f~rA~~L-~Pn~A~~~~~~ 378 (458)
T PRK11906 318 -----------LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA-------KVSHILFEQAKIH-STDIASLYYYR 378 (458)
T ss_pred -----------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch-------hhHHHHHHHHhhc-CCccHHHHHHH
Confidence 0112333344679999999999999999999985553 4455556666775 55789999988
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
|..+.-.. + .+.|....++|++|+|-.--+ --+.-|+
T Consensus 379 ~~~~~~~G----~--------~~~a~~~i~~alrLsP~~~~~-~~~~~~~ 415 (458)
T PRK11906 379 ALVHFHNE----K--------IEEARICIDKSLQLEPRRRKA-VVIKECV 415 (458)
T ss_pred HHHHHHcC----C--------HHHHHHHHHHHhccCchhhHH-HHHHHHH
Confidence 88654322 2 456888899999999976433 2355555
No 59
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.75 E-value=0.025 Score=48.01 Aligned_cols=56 Identities=20% Similarity=0.061 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhh-------cccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALF-------FLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~-------~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
.+|-+.|..|++++|....+++|.|.++. ..|...+|...+.+|..=|++++..-+
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34555788888999999999999999988 466777788889999998988888543
No 60
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.74 E-value=0.053 Score=36.63 Aligned_cols=86 Identities=20% Similarity=0.332 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
-+.+|...|..++...|++..++++.|..+...+. +.+|++-|..++...+ ..+.+++.+|..+...-
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 82 (100)
T cd00189 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-------YEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG---- 82 (100)
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH----
Confidence 35667778899999999999999999988877544 4455555655555433 34688888888865532
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
-...|...|+.++.++|+
T Consensus 83 --------~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 --------KYEEALEAYEKALELDPN 100 (100)
T ss_pred --------hHHHHHHHHHHHHccCCC
Confidence 256778888888888874
No 61
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.67 E-value=0.0074 Score=43.42 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 276 FSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 276 ~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
|.+|+.-|+.++... +..+++++..|..+..+- -+.+|+..|+++|.++|++|
T Consensus 13 ~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQG------------RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCcCCC
Confidence 566667777777653 457999999999977554 46788999999999999987
No 62
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.64 E-value=0.024 Score=48.56 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhccc-------chhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLE-------TAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~-------~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
.+|.+.|..|++++|++..++++.|.++...+ ....|...|.+|.+-|..++... |+.+..=+-.+..+
T Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~ 164 (172)
T PRK02603 89 DKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA----PNNYIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC----chhHHHHHHHHHhc
Confidence 55666888999999999999999999987733 34556677777777777776642 44444444444433
No 63
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.52 E-value=0.096 Score=50.90 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
+.++..+-+.+.++|.++.+ .++.++|-..|.-.....- ++..+-. .|.+ ..++.+ ++-.++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~-~~~~~~~-~~~d----~~ll~~----------~gk~~~- 111 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAV-LQKSAIA-YPKD----RELLAA----------QGKNQI- 111 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHH-Hhhhhcc-Cccc----HHHHHH----------HHHHHH-
Confidence 44677788899999999999 9999999998876632221 1221111 1111 111111 111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
...-+.+|..-+++|++++|+|.+++-.=|++|-..|...+|+.-|.+|++=+ + +.|.+++|-|.-+-
T Consensus 112 ----~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~------~--~~p~~~nNlgms~~ 179 (257)
T COG5010 112 ----RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA------P--NEPSIANNLGMSLL 179 (257)
T ss_pred ----HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc------c--CCchhhhhHHHHHH
Confidence 23446778889999999999999999999999999999999999888887644 2 45999999998764
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
-+. + ++.|..++..|...-+.+..+++.|.
T Consensus 180 L~g----d--------~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 180 LRG----D--------LEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred HcC----C--------HHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 333 2 23344555555555555777766654
No 64
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.51 E-value=0.0056 Score=42.44 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=37.1
Q ss_pred hHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 295 PDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 295 p~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
|++++.+|.++..... +.+|+..|+++|+++|+++.+...|..|
T Consensus 1 p~~~~~la~~~~~~G~------------~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ------------PDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 6788888888766653 6688999999999999999999988764
No 65
>PLN02789 farnesyltranstransferase
Probab=96.43 E-value=0.22 Score=48.49 Aligned_cols=176 Identities=8% Similarity=-0.083 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH-HHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhhhcchhHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL-KLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL-Kl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~~~~k~~~~ 221 (360)
+.++..++.+++..+|.+..+.++-|.++-..|.- ......-+..++... |-.... ++-++..+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l----------- 155 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTL----------- 155 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh-----------
Confidence 67889999999999999999999888766554431 011222223334332 221111 11122211
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 222 SLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 222 ~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
..+.+|-.-|..+|+.||.+..|+++=|.+|...+....-+.+..++++=...++.+ ++....|+++-
T Consensus 156 -----------~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl 223 (320)
T PLN02789 156 -----------GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYL 223 (320)
T ss_pred -----------hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHH
Confidence 236778889999999999999999999999875311000112344555555577776 44557899988
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
|..|..-.. +- -.-.+|++-+.++++.+|+++.|++-|.-+.+|
T Consensus 224 ~~ll~~~~~--~l------~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 224 RGLFKDDKE--AL------VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHhcCCc--cc------ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 888865211 10 001236677788889999999999988776655
No 66
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.40 E-value=0.0074 Score=43.64 Aligned_cols=48 Identities=29% Similarity=0.309 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhccc-chhcHHHHHHHHH
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLE-TAFDADKIFSAAI 280 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~-~a~eAe~L~~aA~ 280 (360)
.=+.+|...|..|++++|++..++||.|++...-+ ...+|.+.|..|+
T Consensus 17 ~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 17 GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34678888999999999999999999999998876 4444444444443
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.26 E-value=0.099 Score=57.15 Aligned_cols=168 Identities=11% Similarity=-0.036 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|+++|.++++.+|.++.++.-++.+|+..|+... ....+..+.+.. |. +... -+++.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e-Al~~l~~l~~~d-p~--~~~~-----------------l~lay 177 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV-VLKQATELAERD-PT--VQNY-----------------MTLSY 177 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH-HHHHHHHhcccC-cc--hHHH-----------------HHHHH
Confidence 378999999999999999999877666665544332 112233333332 21 1111 11111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc-cCCChhHHHhhHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK-GNIYAPDALFGWAVAL 305 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~-~n~~ap~AL~NWGlAL 305 (360)
+..-.... ..|.+.|..+++.+|++.+++++--.+|+..+.+.-|.+|..+==+=|...-.. .-.+...-..+|
T Consensus 178 L~~~~~~~-~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~---- 252 (822)
T PRK14574 178 LNRATDRN-YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRM---- 252 (822)
T ss_pred HHHhcchH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhh----
Confidence 11111222 238889999999999999999999999999776665655544322112110000 000001112233
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQV 343 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa 343 (360)
|.+.+++.+|+-.++.+|...|+..+..-|..|++
T Consensus 253 ---a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~ 287 (822)
T PRK14574 253 ---AVLPTRSETERFDIADKALADYQNLLTRWGKDPEA 287 (822)
T ss_pred ---cccccccchhhHHHHHHHHHHHHHHHhhccCCCcc
Confidence 23355667899999999999999999977776653
No 68
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.24 E-value=0.062 Score=53.27 Aligned_cols=116 Identities=16% Similarity=0.051 Sum_probs=71.9
Q ss_pred HHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCc
Q 036322 119 LTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVI 198 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~ 198 (360)
...|..|=.||-+.|+. --..+|+.+|.+||+++|.++.-+-|=+-||+..|+--.-+-.... ++.= +|.
T Consensus 78 ~~~AE~LK~eGN~~m~~--------~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~-Al~i-Dp~ 147 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKN--------KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES-ALSI-DPH 147 (304)
T ss_pred HHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHH-HHhc-ChH
Confidence 33444444444444433 3467899999999999999999999999999988755443333222 2222 244
Q ss_pred chHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhh
Q 036322 199 SVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLAL 263 (360)
Q Consensus 199 s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL 263 (360)
++-.++|+=. |.. |--=+++|.++|+.||++||+....=-|-.+|=
T Consensus 148 yskay~RLG~--------------A~~-----~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 148 YSKAYGRLGL--------------AYL-----ALGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHHHH--------------HHH-----ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 3334444411 111 011136677899999999999885555555543
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.23 E-value=0.36 Score=50.56 Aligned_cols=209 Identities=19% Similarity=0.202 Sum_probs=134.7
Q ss_pred HHHHhhhhHHHHhhh---hcCCchHHHHHHH------------HHHHHHHHHHHHc--------CcCChHHHhhhhhhHH
Q 036322 119 LTEANDLPKHAKECM---KSGWDEERAEMIL------------HKSARLLSQAIAM--------QHMSLLAVDQLGNTYL 175 (360)
Q Consensus 119 v~ea~~Llk~are~~---~~~~De~~Ad~lL------------~~Aa~~~s~Al~~--------~P~s~~Avgn~GNalL 175 (360)
..+|..|.++|-+.+ .|-+.+..+..+- .+|+.+|..|+.+ .|.-..++-||+-+|.
T Consensus 215 ~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 215 LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY 294 (508)
T ss_pred HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 345566666665553 4446666665543 4688888888865 4555667788998898
Q ss_pred HHHHHHHHH-----HHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhh
Q 036322 176 VREELKLHF-----SCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV--DACEECEELLVKAGRKYRLALSI 248 (360)
Q Consensus 176 ~~GeLKl~~-----s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~--~~~eEaEeLL~eAgrKY~~Al~~ 248 (360)
..|..+--. .-+|..-+.. ...++|...+- +++...+ .-.|++..||..|.+-|..+...
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~~~~------~~~~~v~~~l~-------~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEKLLG------ASHPEVAAQLS-------ELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhc------cChHHHHHHHH-------HHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 877665331 1122221111 11223322221 1222222 23588999999999999977765
Q ss_pred CC-CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 036322 249 DG-NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQAR 327 (360)
Q Consensus 249 dp-~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~ 327 (360)
+- .-.+-+-|-|-.+-..|.-.+|+.+|+.|+.+.+.........---.+++-|.+.-++=+ - .++.+++..++
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~---~--~~a~~l~~~~~ 436 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK---Y--EEAEQLFEEAK 436 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc---c--chHHHHHHHHH
Confidence 44 777888899988888999999999999999999877664333223466666766643332 2 46788999999
Q ss_pred HHHHHhhccCCCchHHHHHHH
Q 036322 328 RLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 328 ~kye~ALrLdpd~~qa~~Al~ 348 (360)
..+ . -.-|++|.+...++
T Consensus 437 ~i~-~--~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 437 DIM-K--LCGPDHPDVTYTYL 454 (508)
T ss_pred HHH-H--HhCCCCCchHHHHH
Confidence 999 3 34677777665544
No 70
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.19 Score=56.30 Aligned_cols=179 Identities=22% Similarity=0.213 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH---HHHHHHHHHhccCCCcchHHHHHH-hhhhhhhhcchh
Q 036322 143 EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL---HFSCKLRRLLLEGDVISVEEQKRI-LKGLDYQFMNKD 218 (360)
Q Consensus 143 d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl---~~s~~Lr~lla~~~p~s~~~~~r~-~~~ld~~~~~k~ 218 (360)
..-++.|...+..++..+-++|.|.--+||-||..-+-+. ++-.-+...+-.++++++-.-|++ +..+.. +++.
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~--~~rn 620 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN--PSRN 620 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc--cccC
Confidence 3446889999999999999999999999999998665443 244444444444567775555554 333322 2221
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHH-------------------------
Q 036322 219 KIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDAD------------------------- 273 (360)
Q Consensus 219 ~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe------------------------- 273 (360)
.+-....+..|...|..||+.+|-..=|=-|=||+|+.-+...+|.
T Consensus 621 ---------~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 621 ---------PEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 2445578899999999999999999999999999999844433333
Q ss_pred --HHHHHHHHHHHHHHhc-cCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 274 --KIFSAAIDNFDAMMLK-GNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 274 --~L~~aA~dKY~AAl~~-~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
.=|..||+-|+-.+.+ ..-+.++.+...|-|+-++.. |+.|+..--.|+++.|.++.++
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~------------~~eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK------------LQEAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhCCccchHH
Confidence 4456677777766653 222468888888888766654 7778888889999999999865
No 71
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.15 E-value=0.26 Score=54.01 Aligned_cols=158 Identities=11% Similarity=-0.023 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.|...|.++++.+|.++.++..|.-.++.-|....-+ .-++.++ +..|.+. ..+..+. ...
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~-~~~eka~-~p~n~~~----~~llalA----------~ly--- 112 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVI-DVYERYQ-SSMNISS----RGLASAA----------RAY--- 112 (822)
T ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHH-HHHHHhc-cCCCCCH----HHHHHHH----------HHH---
Confidence 7889999999999999877777765555555554322 2233434 2222221 1111110 000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
.-+.=+..|..-|+.+++.+|++..+|+.-+....+.+. ..+|++++.+++... |. +.+-+++..
T Consensus 113 --~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q-------~~eAl~~l~~l~~~d----p~--~~~~l~lay 177 (822)
T PRK14574 113 --RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR-------GGVVLKQATELAERD----PT--VQNYMTLSY 177 (822)
T ss_pred --HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC-------HHHHHHHHHHhcccC----cc--hHHHHHHHH
Confidence 001223478889999999999999999844333333433 245666666555542 33 333344433
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
+..-. .+-.+ |+..|++++.++|+++++.--+
T Consensus 178 L~~~~-------~~~~~-AL~~~ekll~~~P~n~e~~~~~ 209 (822)
T PRK14574 178 LNRAT-------DRNYD-ALQASSEAVRLAPTSEEVLKNH 209 (822)
T ss_pred HHHhc-------chHHH-HHHHHHHHHHhCCCCHHHHHHH
Confidence 33211 11222 9999999999999999986543
No 72
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.09 E-value=0.0042 Score=42.00 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHhhhCCCchhhHHhHHHhhhcccchhcHH
Q 036322 242 YRLALSIDGNDVRALYNWGLALFFLETAFDAD 273 (360)
Q Consensus 242 Y~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe 273 (360)
|++||+++|+++.|++|-|.++...|...+|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 88999999999999999999999877766553
No 73
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.01 E-value=0.055 Score=51.40 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhhCCCch---hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDV---RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~---~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|...|...+...|++. .|+|--|.++-..+.-.+|-..|...+++|- .....|+|++.-|..+..+-
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-----~s~~~~dAl~klg~~~~~~g-- 231 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-----KSPKAADAMFKVGVIMQDKG-- 231 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCcchhHHHHHHHHHHHHcC--
Confidence 5678888999999999984 7999888888778887777777777777774 34467999999999876432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
-..+|+..|+.++...|++..+..|..
T Consensus 232 ----------~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 232 ----------DTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred ----------CHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 356788999999999999999988843
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.80 E-value=0.4 Score=46.87 Aligned_cols=179 Identities=11% Similarity=0.035 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHH--HHHHHHHhccCCCcchH-HHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHF--SCKLRRLLLEGDVISVE-EQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~--s~~Lr~lla~~~p~s~~-~~~r~~~~ld~~~~~k~~~~~a 223 (360)
..|.+.+.++++..|.++.++.-++.+|+..|.-..-. ...|+....-+ |.... -+..+..++-.+.
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~l~~~~--------- 239 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAWIGLMDQA--------- 239 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHH---------
Confidence 46778889999999999999999999999887665321 22222211111 10000 0001111110000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH--------------------
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF-------------------- 283 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY-------------------- 283 (360)
.- ....+.+.. -+......-|++..+.+.-+.++...|...+|.+++..+.++-
T Consensus 240 ~~---~~~~~~l~~---~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~a 313 (398)
T PRK10747 240 MA---DQGSEGLKR---WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQL 313 (398)
T ss_pred HH---hcCHHHHHH---HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHH
Confidence 00 000000000 1111112225566666666666666666666666665555432
Q ss_pred ----HHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 284 ----DAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 284 ----~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
+..+. ..+..|+.++-.|-. .-+.+.|.+|...|++++.++|+++... .|..|-.+++
T Consensus 314 l~~~e~~lk-~~P~~~~l~l~lgrl------------~~~~~~~~~A~~~le~al~~~P~~~~~~-~La~~~~~~g 375 (398)
T PRK10747 314 EKVLRQQIK-QHGDTPLLWSTLGQL------------LMKHGEWQEASLAFRAALKQRPDAYDYA-WLADALDRLH 375 (398)
T ss_pred HHHHHHHHh-hCCCCHHHHHHHHHH------------HHHCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcC
Confidence 11111 111233333333322 1233469999999999999999987733 5666655554
No 75
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.68 E-value=0.024 Score=40.80 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
+.+|.+.|+.+++.+|++.+++++-|.++...|...+|..+|.++++.
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999988887777777777654
No 76
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.3 Score=48.08 Aligned_cols=128 Identities=19% Similarity=0.166 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
..-+..++.-|+.||.+.+=..-||-+|+.+|+.-
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~--------------------------------------------- 173 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS--------------------------------------------- 173 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh---------------------------------------------
Confidence 34455677778888888888888888888643322
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
.|-..|+.|+++.|+..+.+-+||-+|.. +..+.+++.||.+|..+ +...+-|++-.|+
T Consensus 174 ----------~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--------D~~~iral~lLA~ 235 (287)
T COG4235 174 ----------DALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--------DPANIRALSLLAF 235 (287)
T ss_pred ----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--------CCccHHHHHHHHH
Confidence 23347888889999999999999988888 44567777777766532 2234677777777
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
++.+=. -.++|+..++.-|.+.|-+---+..+..
T Consensus 236 ~afe~g------------~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 236 AAFEQG------------DYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHcc------------cHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 744322 3556677777777777766555444443
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.47 Score=50.88 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH--HHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL--RRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L--r~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+|-++||+|..|+|.=..|.--+|+++..-||=-+-+++=- ..+++..--|.. .-|++--..
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L------Ylgmey~~t---------- 393 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL------YLGMEYMRT---------- 393 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH------HHHHHHHHh----------
Confidence 56688999999999999999999999998888777666511 123344433332 223332111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcH---------------------------------
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDA--------------------------------- 272 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eA--------------------------------- 272 (360)
--+..|-+-|..|+.++|+|+=.+--=|.+.-.-+.=++|
T Consensus 394 -------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 394 -------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred -------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 2345566678888888888875544333332212222223
Q ss_pred -HHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 273 -DKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 273 -e~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-..|.+||+-|++++.+++ ..+.++-.-|.-..- ..-+..|+..|-+||.++||+.-+.+-|..|+
T Consensus 467 kl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~l------------lgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHL------------LGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHH------------hcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3456666666666666544 335555554544322 22567788888888888888888877777776
Q ss_pred hh
Q 036322 352 SE 353 (360)
Q Consensus 352 ~e 353 (360)
-.
T Consensus 534 e~ 535 (611)
T KOG1173|consen 534 ED 535 (611)
T ss_pred Hh
Confidence 43
No 78
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.44 E-value=0.62 Score=49.82 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 275 IFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 275 L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
=|..|+|=|++|+++.| +.---.|..|-.|..--+ + ..||.-|++||+|.|++--||-=
T Consensus 445 efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~-----s-------~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNR-----S-------EEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred HHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcc-----c-------HHHHHHHHHHHhcCCCeeeeehh
Confidence 36778888888887633 224455666766543221 2 23677888888888887666543
No 79
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.34 E-value=0.16 Score=49.34 Aligned_cols=95 Identities=23% Similarity=0.234 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhhCCCchhh-----HHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 234 LLVKAGRKYRLALSIDGNDVRA-----LYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~A-----LYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
.+.+|..+|..||++||.-..- |-|-|.|+ =.-.-|+.||+--..++++.++| -.||-+ |
T Consensus 110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~-------iKl~k~e~aI~dcsKaiel~pty-~kAl~R-------R 174 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAAL-------IKLRKWESAIEDCSKAIELNPTY-EKALER-------R 174 (271)
T ss_pred cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH-------HHhhhHHHHHHHHHhhHhcCchh-HHHHHH-------H
Confidence 3567899999999999965441 22334333 34566899999999999998876 344443 3
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
|.+ -|+..-+..|+.-|...+-++|...|+++|+.
T Consensus 175 Aea-----yek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 175 AEA-----YEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHH-----HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 332 36667788999999999999999999999965
No 80
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.25 E-value=3.3 Score=40.57 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
..|.+.++..++..|.++.++.-+|.+|+..|...
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 45667889999999999999999999999988775
No 81
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.07 E-value=1.9 Score=48.81 Aligned_cols=126 Identities=19% Similarity=0.150 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHH-Hhhhc----------------ccchhcHH----------HHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWG-LALFF----------------LETAFDAD----------KIFSAA 279 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWG-lAL~~----------------~~~a~eAe----------~L~~aA 279 (360)
.|.||---++.|..-|...|.-.|+.++++..=| +|-.- -.+.++|. ..|.-|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 3555555578888999999999999999999988 44111 12344554 445578
Q ss_pred HHHHHHHHhccCCChhHHHhhHHHHHHHhhhc--CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 280 IDNFDAMMLKGNIYAPDALFGWAVALQQRSRL--RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 280 ~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l--r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
-+||..++....+. |++|---+++=--+.++ ..++++-+.+....|+.+|.+||+.+|-|.=|.+.+--|.++
T Consensus 584 ~k~f~~i~~~~~~~-~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 584 KKKFETILKKTSTK-TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred ccHHHHHHhhhccC-CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 89999888754433 55554333332333333 333455566788899999999999999998888877666654
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.05 E-value=0.15 Score=55.88 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHH--HHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADK--IFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~--L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
=+....+++|-..|-.|+.+||+++..+.-=|-.|...|...=|++ +... |+++.+. .|+|.|+-|-.++
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d-------alr~dp~-n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSD-------ALRLDPL-NHEAWYYLGEVFK 765 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH-------HHhhCCC-CHHHHHHHHHHHH
Confidence 3445889999999999999999999999999999988776544544 6654 4555454 5999999999977
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
.+. .++||+.||+.|++|++.+|
T Consensus 766 ~~G------------d~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 766 KLG------------DSKQAAECFQAALQLEESNP 788 (799)
T ss_pred Hcc------------chHHHHHHHHHHHhhccCCC
Confidence 655 35599999999999999887
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.02 E-value=2.2 Score=47.16 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhccc
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNH 356 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~~ 356 (360)
.-+....+..|+..|-.|+.+||+++++.-||..|..|+-.
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 35777789999999999999999999999999999998754
No 84
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.97 E-value=0.062 Score=55.67 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhCCCchhh---HHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRA---LYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~A---LYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
.+|..-|++||+++|++..| +||=|.++..-|...+|..-+..|++-
T Consensus 92 eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 92 KDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566899999999999876 999999999999999999999998884
No 85
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.90 E-value=0.05 Score=39.05 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
+..|+++|.+++...|.+.++.++||++|+..|+...
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 43 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDE 43 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence 5689999999999999999999999999999988874
No 86
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.77 E-value=0.16 Score=52.79 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=53.5
Q ss_pred hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhH---HHhhHHHHHHHhhhcCCCChHHHHHHHH
Q 036322 248 IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPD---ALFGWAVALQQRSRLRPRNSKEKVKLLQ 324 (360)
Q Consensus 248 ~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~---AL~NWGlALqerA~lr~~sskEk~~Ll~ 324 (360)
.+|++..+++|.|++|...+. |.+|+.-|++++.+.+ +.++ ++||-|.++..+-+ ..|+.+.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr-------yeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr-----~dEAla~Lr 136 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR-------VKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREE-----GKKAADCLR 136 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCC-----HHHHHHHHH
Confidence 589999999999999988666 6778888888888744 4454 59999999987654 457777777
Q ss_pred HHHHH
Q 036322 325 QARRL 329 (360)
Q Consensus 325 qA~~k 329 (360)
+|+..
T Consensus 137 rALel 141 (453)
T PLN03098 137 TALRD 141 (453)
T ss_pred HHHHh
Confidence 77664
No 87
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=1.2 Score=47.72 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH--H
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL--V 225 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL--~ 225 (360)
+..+.|..|..++|.+++.+|.=|-.+.+.++.+-.++. .+...+= +|-.+ -+-|.. +=++ +
T Consensus 378 ~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD-F~Kai~L-~pe~~--~~~iQl------------~~a~Yr~ 441 (606)
T KOG0547|consen 378 KMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD-FQKAISL-DPENA--YAYIQL------------CCALYRQ 441 (606)
T ss_pred HHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH-HHHHhhc-Chhhh--HHHHHH------------HHHHHHH
Confidence 345678999999999999999999888887766644332 1111100 01100 000100 0011 1
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCC-----hhHHHhh
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIY-----APDALFG 300 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~-----ap~AL~N 300 (360)
+.-.+|+..+.++-+|| |+-+..+-=.|=+|.+-. =|..|++.|+.++.+-++. .+.-|.+
T Consensus 442 ~k~~~~m~~Fee~kkkF-------P~~~Evy~~fAeiLtDqq-------qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKF-------PNCPEVYNLFAEILTDQQ-------QFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHhC-------CCCchHHHHHHHHHhhHH-------hHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 22366777777777766 777777777788887733 3788999999888876651 2444555
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 301 WAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 301 WGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
=|+.+-+ + + +=+-+|+.+.++|+-+||-..||.+.|.+
T Consensus 508 Ka~l~~q-----w---k---~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 508 KALLVLQ-----W---K---EDINQAENLLRKAIELDPKCEQAYETLAQ 545 (606)
T ss_pred hhHhhhc-----h---h---hhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 5554332 2 2 34778999999999999999999887754
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.61 E-value=0.042 Score=39.43 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
+.+|.+.|..++..+|++.++.+++|.++...|...+|..++..+..+.
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5778889999999999999999999999999998888888777665544
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.55 E-value=1.3 Score=49.63 Aligned_cols=191 Identities=15% Similarity=0.051 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCc---chHH--HHHHhhhhhhhhcchhHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVI---SVEE--QKRILKGLDYQFMNKDKI 220 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~---s~~~--~~r~~~~ld~~~~~k~~~ 220 (360)
+.++.+.+..+++..|.++.+++-+|-.|+..+....-. .+ .++.--... .... ...++.-. .++.
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~--lv-~~l~~~~~~~~~~~ve~~~~~i~~~~----~~k~-- 117 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSN--LL-NLIDSFSQNLKWAIVEHICDKILLYG----ENKL-- 117 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhh--hh-hhhhhcccccchhHHHHHHHHHHhhh----hhhH--
Confidence 456778888999999999999999998666655532211 11 222111000 0000 01111111 1111
Q ss_pred HHHHHHhhHHHH--HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 221 ASLLVDACEECE--ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 221 ~~aL~~~~eEaE--eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
||...+.-.+ ....+|...|.++|++||+++.||-|-|-.++.. .-..|..++..|+..|=. +-+-.+++
T Consensus 118 --Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~-----~kq~~~~~ 189 (906)
T PRK14720 118 --ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK-----KKQYVGIE 189 (906)
T ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh-----hhcchHHH
Confidence 2332222222 4467888999999999999999999999999998 888899999999776521 11112333
Q ss_pred hhHHHH-----------HHHhhhcCCC--------------ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 299 FGWAVA-----------LQQRSRLRPR--------------NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 299 ~NWGlA-----------LqerA~lr~~--------------sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
--|--- ++-..++... ..=-+.+.|-+++..+..+|-++|.|..++.-|.-|.-+
T Consensus 190 e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 190 EIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 334321 1111122111 001233456699999999999999999999999999763
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.41 E-value=0.92 Score=47.64 Aligned_cols=123 Identities=18% Similarity=0.148 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchh-hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVR-ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~-ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
-.||+.++.+|.+-|...+-..+.+.. .|-|=+..++.-+..-+|..|+..|.+-|..+....++.-+..+.|.|--++
T Consensus 299 f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 299 FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL 378 (508)
T ss_pred hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 489999999999999996666655554 4555555555588888999999999999987777767677899999999988
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhcc-CCCchHHHHHHHhhhhhcc
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHM-NSDNLQVREALSSCMSELN 355 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrL-dpd~~qa~~Al~~c~~el~ 355 (360)
..-+ =.|++++++.|+.+.++..-- ++...-+++=|..-..|++
T Consensus 379 ~~gk-----~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k 423 (508)
T KOG1840|consen 379 KMGK-----YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK 423 (508)
T ss_pred Hhcc-----hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc
Confidence 7655 358888999999888876543 4443444444433334443
No 91
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.36 E-value=0.083 Score=33.41 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=27.6
Q ss_pred hHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 295 PDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 295 p~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
|+++++.|..+...- -+++|+..|++||+++|++
T Consensus 1 a~~~~~lg~~~~~~~------------~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG------------NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHCcCC
Confidence 578888888865543 5789999999999999986
No 92
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=1 Score=48.06 Aligned_cols=149 Identities=16% Similarity=0.204 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHh-ccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 149 SARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLL-LEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ll-a~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
|..-|.++|.++|...--+--+|-+|+-.....+-+ .-+..+. -+..-++++.+..-.+ .|.
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~-~~F~~A~~ldp~n~dvYyHRgQm~--------------flL-- 407 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMW-KDFNKAEDLDPENPDVYYHRGQMR--------------FLL-- 407 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHH-HHHHHHHhcCCCCCchhHhHHHHH--------------HHH--
Confidence 556788899998887776667776666433222111 1111111 1111222333221111 111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
.-+.+|..-|..|++++|+..=++.--+.|+--...-.+..+.|.++++|| ++ .|+.|+-.|-.|-+
T Consensus 408 -----~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF------P~--~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 408 -----QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF------PN--CPEVYNLFAEILTD 474 (606)
T ss_pred -----HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CC--CchHHHHHHHHHhh
Confidence 235678889999999999999888877777665666677889999999999 33 58999999999876
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
.- =+-+|+..|..|+.|.|.
T Consensus 475 qq------------qFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 475 QQ------------QFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HH------------hHHHHHHHHHHHHhhccc
Confidence 54 377899999999999999
No 93
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.10 E-value=0.29 Score=46.62 Aligned_cols=83 Identities=11% Similarity=0.064 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCcCC---hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAMQHMS---LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s---~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
.+|+..|.+.+...|.+ +.|++-+|.+|...|..
T Consensus 160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~------------------------------------------- 196 (263)
T PRK10803 160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK------------------------------------------- 196 (263)
T ss_pred HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH-------------------------------------------
Confidence 46777899999999999 58999999888854322
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCC---chhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGN---DVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~---d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
..|...|..++...|+ ..+|||.=|......+....|.+.|...+++|-
T Consensus 197 ------------~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 197 ------------DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred ------------HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2334457777776665 577888878877778888888888888888883
No 94
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.65 E-value=0.12 Score=33.25 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=27.8
Q ss_pred hHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 295 PDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 295 p~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
|.+|++-|.++..+- -+.+|+..|+.||+++|++
T Consensus 1 a~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG------------DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhC------------CchHHHHHHHHHHHHCcCC
Confidence 568888888876654 4788999999999999985
No 95
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.50 E-value=3.3 Score=43.20 Aligned_cols=104 Identities=15% Similarity=0.003 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc-cchhcHHHHHHHHHHHHHHHHhc-cCCChhHHHhhHHHHHHHhhhc
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFL-ETAFDADKIFSAAIDNFDAMMLK-GNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~-~~a~eAe~L~~aA~dKY~AAl~~-~n~~ap~AL~NWGlALqerA~l 311 (360)
-+..|-.-|.+|+++||+.+.|+-.-+++-... .-...-+.-+.++.+...+++.+ .....|.++.-.|+. .+.
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~--~~~-- 432 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQ--ALV-- 432 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHH--HHh--
Confidence 355788889999999999988877644433220 00111122334555555555553 122336666655554 222
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
+ .-+.+|...|++|+.|+|+ .++...+-.|
T Consensus 433 ~--------g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~ 462 (517)
T PRK10153 433 K--------GKTDEAYQAINKAIDLEMS-WLNYVLLGKV 462 (517)
T ss_pred c--------CCHHHHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 1 2466799999999999995 6666655543
No 96
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=2.3 Score=45.79 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
+|+.+|.+|-.+=|.+|.-..=+|-=|..-+.+|
T Consensus 364 QAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 4666677777776777777666773333333333
No 97
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=4.2 Score=43.09 Aligned_cols=175 Identities=21% Similarity=0.191 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcch
Q 036322 138 DEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNK 217 (360)
Q Consensus 138 De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k 217 (360)
++-.+.+.|+.+ +++|..+|-++.|+--=||+|+..|+....+-. .|++--= .|. +=++-+||= .+
T Consensus 312 ~~K~~~rAL~~~----eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia-FR~Aq~L-ap~----rL~~Y~GL~---hs- 377 (564)
T KOG1174|consen 312 DEKKFERALNFV----EKCIDSEPRNHEALILKGRLLIALERHTQAVIA-FRTAQML-APY----RLEIYRGLF---HS- 377 (564)
T ss_pred hhhhHHHHHHHH----HHHhccCcccchHHHhccHHHHhccchHHHHHH-HHHHHhc-chh----hHHHHHHHH---HH-
Confidence 344444444444 567899999999999999999987776654221 2221111 011 122333331 11
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHH-HhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhH
Q 036322 218 DKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWG-LALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPD 296 (360)
Q Consensus 218 ~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWG-lAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~ 296 (360)
-|+ -..-.+-++-|-..|+.- |+..++|.=.| .++.+...+.| .|-+=|+..+.+-|-|-|.
T Consensus 378 -----YLA--~~~~kEA~~~An~~~~~~----~~sA~~LtL~g~~V~~~dp~~rE------KAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 378 -----YLA--QKRFKEANALANWTIRLF----QNSARSLTLFGTLVLFPDPRMRE------KAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred -----HHh--hchHHHHHHHHHHHHHHh----hcchhhhhhhcceeeccCchhHH------HHHHHHHhhhccCCccHHH
Confidence 000 011112223333333333 77777777777 33333222332 2222334555554555554
Q ss_pred HHhhHHHHHHHhhhcCCCChHHHHH--------------------------HHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 297 ALFGWAVALQQRSRLRPRNSKEKVK--------------------------LLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 297 AL~NWGlALqerA~lr~~sskEk~~--------------------------Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
++ ++.++-.+.+. .+.... -++.|.+.|..||++||++.-++..|..
T Consensus 441 V~-----~~AEL~~~Eg~-~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 441 VN-----LIAELCQVEGP-TKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HH-----HHHHHHHhhCc-cchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 42 34444433333 233333 3467888999999999999999999864
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.55 E-value=0.52 Score=45.95 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
++|=+.|+.|+++.|++..++-|-|.-+...|+-.+|++|+..|.- .+...+.+-.|-.++.
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--------~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--------SPAADSRVRQNLALVV 212 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--------CCCCchHHHHHHHHHH
Confidence 5677799999999999999999999999999999999999887632 2222356666655553
No 99
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.48 E-value=5.6 Score=43.32 Aligned_cols=178 Identities=18% Similarity=0.178 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHH----hhhhhhhhcchh
Q 036322 143 EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRI----LKGLDYQFMNKD 218 (360)
Q Consensus 143 d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~----~~~ld~~~~~k~ 218 (360)
.-=..+|..+|++.-..-|...=.+-|+|-||-+.++--. +.++=..+-+..|..+.+ -.+ +=-|-..+.- .
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~--a~~~F~~~r~~~p~rv~~-meiyST~LWHLq~~v~L-s 407 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQ--AERIFSLVRRIEPYRVKG-MEIYSTTLWHLQDEVAL-S 407 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccccccc-hhHHHHHHHHHHhhHHH-H
Confidence 4456788899999545566777888899988887665432 222222333455554321 111 1111000000 0
Q ss_pred HHHHHHHHh--------hHHH-----HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHH
Q 036322 219 KIASLLVDA--------CEEC-----EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDA 285 (360)
Q Consensus 219 ~~~~aL~~~--------~eEa-----EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~A 285 (360)
-++.-|++. |--+ .+=...|.+-|.+||++||+..=||.=||=-+.. -.=|..|...|+.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-------~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-------TEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh-------hHHHHhHHHHHHh
Confidence 112222222 2222 2446789999999999999999999888865554 3336788889999
Q ss_pred HHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 286 MMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 286 Al~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
|+.+ ++.-.-|+|..|+.+ ++ .+-++.|.-.|++|+.+||.+-+.+
T Consensus 481 Al~~-~~rhYnAwYGlG~vy-----~K-------qek~e~Ae~~fqkA~~INP~nsvi~ 526 (638)
T KOG1126|consen 481 ALGV-DPRHYNAWYGLGTVY-----LK-------QEKLEFAEFHFQKAVEINPSNSVIL 526 (638)
T ss_pred hhcC-CchhhHHHHhhhhhe-----ec-------cchhhHHHHHHHhhhcCCccchhHH
Confidence 9985 433357888778763 22 3358899999999999999997654
No 100
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.57 E-value=1 Score=32.67 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 275 IFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 275 L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
-|..|.+-++.++.+.| ..|.+++.-|..+...- -+..|...|+.+|.++|+++++.-..
T Consensus 10 ~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g------------~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 10 DYEEALEVLERALELDP-DDPELWLQRARCLFQLG------------RYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred CHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhc------------cHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 36788888888888644 57899999888865543 57889999999999999999987654
No 101
>PRK11906 transcriptional regulator; Provisional
Probab=91.18 E-value=1.2 Score=46.50 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
..+|.++-..|++++|.++-|++-+|.++...|+..
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~-------------------------------------------- 355 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAK-------------------------------------------- 355 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchh--------------------------------------------
Confidence 456777788899999999999999997777654422
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAA 279 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA 279 (360)
.|---+.+|+.++|+...++|==|..+...|.+.+|......|
T Consensus 356 -----------~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 356 -----------VSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred -----------hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112467889999999999998888888877765555444443
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=1.3 Score=47.22 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.-|++-|-.||.++|..|=-|-|=-.+....+. |.+|.+-=.+.+.+.| +=|.+|.+-|.|++.+..
T Consensus 18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-------~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~---- 85 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-------YEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGD---- 85 (539)
T ss_pred HHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-------HHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhccc----
Confidence 3567889999999999988777676666554222 3333333334445433 349999999999988874
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+..|+.-|.+.|..+|+|+|....|.+-.
T Consensus 86 --------~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 --------YEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred --------HHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 67799999999999999999999987654
No 103
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=90.88 E-value=1.5 Score=37.54 Aligned_cols=92 Identities=24% Similarity=0.209 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhhCC---CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 236 VKAGRKYRLALSIDG---NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp---~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
.+|..-|++|++... ...+|+.+.|..+..-|...+|..+|.+++..|- .+...+.+-+--+++|..+.+
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-----~~~~~~~l~~f~Al~L~~~gr-- 90 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-----DDELNAALRVFLALALYNLGR-- 90 (120)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHHCCC--
Confidence 567778999998744 3478999999999999999999999999998773 222234444555666665553
Q ss_pred CCChHHHHHHHHH----HHHHHHHhhccC
Q 036322 313 PRNSKEKVKLLQQ----ARRLYQDALHMN 337 (360)
Q Consensus 313 ~~sskEk~~Ll~q----A~~kye~ALrLd 337 (360)
.+|..+.+-+ -...|++||+..
T Consensus 91 ---~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 91 ---PKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655544 345777777643
No 104
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.87 E-value=3 Score=38.92 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhhCCCchhhH---HhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc--cCCChhHHHhhHHHHHHHh
Q 036322 234 LLVKAGRKYRLALSIDGNDVRAL---YNWGLALFFLETAFDADKIFSAAIDNFDAMMLK--GNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~AL---YNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~--~n~~ap~AL~NWGlALqer 308 (360)
-+..|.+.|..++...|+..-+- |+=|.+.-.-+. |.+|+.-|+..+.. .+...|.|+|--|++...+
T Consensus 47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~-------y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-------LPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 35578889999999999876554 666666555665 45555555555543 3446789999999885444
Q ss_pred hh-----c-CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH---HHhhhhhcc
Q 036322 309 SR-----L-RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA---LSSCMSELN 355 (360)
Q Consensus 309 A~-----l-r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A---l~~c~~el~ 355 (360)
.. . ......-=....++|+..|+..|+.=|+++-+.+| |..|...|-
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 31 1 11101111345788999999999999999988888 777776554
No 105
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=1.8 Score=46.04 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
-+.|...|++|+.+||....|-.=-|=--.+-+.+ .+||+-|+.|+.++|. ..-|.|..|-|+.-+
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt-------~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim------ 411 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT-------HAAIESYRRAVDINPR-DYRAWYGLGQAYEIM------ 411 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc-------HHHHHHHHHHHhcCch-hHHHHhhhhHHHHHh------
Confidence 46788999999999998877644333222221111 5799999999998775 478999889886433
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhccc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNH 356 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~~ 356 (360)
..=.=|.=+|++|+.+.|+++-...||-.|-+-||.
T Consensus 412 ------~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 412 ------KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred ------cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 233457789999999999999999999999887764
No 106
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=90.47 E-value=3.6 Score=36.78 Aligned_cols=115 Identities=14% Similarity=0.070 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhhCCC---chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGN---DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~---d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|.+.|...+..-|+ -.+|++.-|-+.-..+.-.+|...|..-+++|= .....|.|+|..|++.-....=
T Consensus 21 y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP-----~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 21 YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP-----NSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-----T-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCcchhhHHHHHHHHHHHhCcc
Confidence 45666677777776664 457788777776666665555444444444442 2235689999999987665421
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH---HHhhhhhcc
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA---LSSCMSELN 355 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A---l~~c~~el~ 355 (360)
... ...-.+...+|+..|+..|+.-|+++-+.+| |..|+..|-
T Consensus 96 ~~~-~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 96 ILR-SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp HH--TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred chh-cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 000 1233467899999999999999999988877 777776553
No 107
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.40 E-value=12 Score=42.30 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHH
Q 036322 143 EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLR 189 (360)
Q Consensus 143 d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr 189 (360)
.-.+..|+=||++||.++|++-+-+++-.--|..+|.++..+---++
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 44577899999999999999999999999999999999987666555
No 108
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.25 E-value=1 Score=46.42 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 276 FSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 276 ~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
|.+|++.=..+|...+ ..+.|||+-|-|+-.+.- +.-|+.-|++|+.++|+|..|...|..|..
T Consensus 273 ~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e------------~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDP-NNVKALYRRGQALLALGE------------YDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhcc------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 5567777777777544 458999999999877763 567889999999999999999999887753
No 109
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=89.44 E-value=0.91 Score=46.58 Aligned_cols=86 Identities=26% Similarity=0.234 Sum_probs=67.9
Q ss_pred HHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 036322 116 DRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEG 195 (360)
Q Consensus 116 ~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~ 195 (360)
...+.||..-||+|-++-+.|-++ +|+++|+-|+++.|..++++--.|- |+.
T Consensus 110 pa~~kEA~~Al~~A~~~~~~Gk~e--------kA~~lfeHAlalaP~~p~~L~e~G~-----------f~E--------- 161 (472)
T KOG3824|consen 110 PAKVKEAILALKAAGRSRKDGKLE--------KAMTLFEHALALAPTNPQILIEMGQ-----------FRE--------- 161 (472)
T ss_pred chhhHHHHHHHHHHHHHHhccchH--------HHHHHHHHHHhcCCCCHHHHHHHhH-----------HHH---------
Confidence 357899999999999997777654 7889999999999999999888871 111
Q ss_pred CCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhh
Q 036322 196 DVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF 264 (360)
Q Consensus 196 ~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~ 264 (360)
- ..-+++|-.-|-+|+.++|...+||.|-..-+-
T Consensus 162 --------------~---------------------~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 162 --------------M---------------------HNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred --------------h---------------------hhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 0 122467777899999999999999999766543
No 110
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.43 E-value=1.2 Score=32.94 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=52.3
Q ss_pred CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 036322 250 GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRL 329 (360)
Q Consensus 250 p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~k 329 (360)
|+-..+|.|=|.++..-+.-.+|...|.+|++-++ .+.-.......+++|-|..+..+-. ..++.+.+++|...
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~lg~~~~~~g~-----~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEE-QLGDDHPDTANTLNNLGECYYRLGD-----YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHHHHTTH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhh
Confidence 34457888999999999999999999999998843 2221111124677888888776654 45777777777776
Q ss_pred HHH
Q 036322 330 YQD 332 (360)
Q Consensus 330 ye~ 332 (360)
|++
T Consensus 76 ~~k 78 (78)
T PF13424_consen 76 FEK 78 (78)
T ss_dssp HHH
T ss_pred hcC
Confidence 653
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=89.29 E-value=7.2 Score=44.88 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
+|-+||.+|++++|.+.+|---..-||.+.-.-...++--|+ .+...|.-.-.+.-+.+|+-. +.+
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~--~~qka~a~~~k~nW~~rG~yy--Lea---------- 575 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR--AAQKAPAFACKENWVQRGPYY--LEA---------- 575 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH--HhhhchHHHHHhhhhhccccc--cCc----------
Confidence 355677777777777777766666666654443333332222 122222221112222244322 122
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH--------HHH-HHHhccCCChhHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID--------NFD-AMMLKGNIYAPDAL 298 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d--------KY~-AAl~~~n~~ap~AL 298 (360)
.-+-.|..-++.|++.+|.|+.+--+=|=|--..|.-..|-++|..|.. +|. +++++-+----.|+
T Consensus 576 -----~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 576 -----HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred -----cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 1234455578999999999988877766666667777778888876653 444 45554222224777
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhccc
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNH 356 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~~ 356 (360)
-..|.-++.++.=++.--.=.+-.+.-|+..+-.-++..|=+- +..++.+|+.-|.|
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~-~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF-FEKSIESFIVSLIH 707 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHH
Confidence 7788888888875555222233345555544444444433221 22344455444433
No 112
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.27 E-value=1.1 Score=41.67 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=59.4
Q ss_pred CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 036322 250 GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRL 329 (360)
Q Consensus 250 p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~k 329 (360)
..+...+|..|..+...|.-.+|..+|++...+|- ...+.++|.++-|.++-.... ..+|+..
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a~~a~l~la~ayy~~~~------------y~~A~~~ 91 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNAD------------LPLAQAA 91 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCC------------HHHHHHH
Confidence 35777888888888777775555555555555442 333567888988888765542 7899999
Q ss_pred HHHhhccCCCchHHHHH
Q 036322 330 YQDALHMNSDNLQVREA 346 (360)
Q Consensus 330 ye~ALrLdpd~~qa~~A 346 (360)
|++.|++.|++|.+-.|
T Consensus 92 ~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 92 IDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHHhCcCCCchHHH
Confidence 99999999999999877
No 113
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.95 E-value=0.56 Score=32.39 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhh
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGN 172 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GN 172 (360)
+.+|.+.|.++|+..|+++.|...||.
T Consensus 17 ~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 17 PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457889999999999999999999883
No 114
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=4.1 Score=40.35 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|..-|.+|+.+.|++++..+-||.||.- .+ ++.
T Consensus 172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~----------------~a-~~~--------------------------- 207 (287)
T COG4235 172 ASDALLAYRNALRLAGDNPEILLGLAEALYY----------------QA-GQQ--------------------------- 207 (287)
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------hc-CCc---------------------------
Confidence 3567788999999999999999999987763 12 221
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP 295 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap 295 (360)
+. .+|..-++.|+..||++.+|++=-|.+....+. |.+|+.-++.++.+.+...|
T Consensus 208 -~t-------a~a~~ll~~al~~D~~~iral~lLA~~afe~g~-------~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 208 -MT-------AKARALLRQALALDPANIRALSLLAFAAFEQGD-------YAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred -cc-------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-------HHHHHHHHHHHHhcCCCCCc
Confidence 11 334456778899999999999988888777666 45666666777777565433
No 115
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.40 E-value=3.5 Score=37.88 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-----ccch-----hcHHHHHHHHHHHHHHHHhccCCChhH
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFF-----LETA-----FDADKIFSAAIDNFDAMMLKGNIYAPD 296 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-----~~~a-----~eAe~L~~aA~dKY~AAl~~~n~~ap~ 296 (360)
-..++.+.|..|+.++|+.++++|+||..... +... ..-..+...|+.-|-.++..++.+..+
T Consensus 273 ~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~ 345 (352)
T PF02259_consen 273 SSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQ 345 (352)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchHH
Confidence 36788999999999999999999999998877 2111 256788899999999999887764433
No 116
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.38 E-value=15 Score=34.32 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc-cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 230 ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL-ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~-~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
+|...|..|+.-|...=+. ..-.+++.+=|..+-.. ++...|-.+|.+|++=|+.-=. +....+.+.+-|.-+..+
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~-~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRF-SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--PHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-H-HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHHHHHHHHHh
Confidence 4445555555555432000 01135666666666665 7888888888888888873111 112234444444443322
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCC----chHHHHH-HHhhhhh
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSD----NLQVREA-LSSCMSE 353 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd----~~qa~~A-l~~c~~e 353 (360)
. -+.+|+..|++++...-+ ...+.+. |..+++-
T Consensus 169 ~------------~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 169 G------------RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp T-------------HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH
T ss_pred C------------CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 2 567778888777664322 2345443 4444443
No 117
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.69 E-value=1.4 Score=24.62 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=26.2
Q ss_pred hHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 295 PDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 295 p~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
|.++++.|..+.... -+++|+..|+.++.++|++
T Consensus 1 ~~~~~~~a~~~~~~~------------~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 1 AEALYNLGNAYLKLG------------DYDEALEYYEKALELDPNN 34 (34)
T ss_pred ChHHHHHHHHHHHHh------------hHHHHHHHHHHHHccCCCC
Confidence 467888888866553 3678889999999998864
No 118
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=87.22 E-value=18 Score=37.39 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLD 211 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld 211 (360)
+|+.+|...+..+|+..++..-|||-+-.|||.-..| +-=++++... -.....+-.++..|-
T Consensus 53 KAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAI-RiHQ~L~~sp-dlT~~qr~lAl~qL~ 114 (389)
T COG2956 53 KAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAI-RIHQTLLESP-DLTFEQRLLALQQLG 114 (389)
T ss_pred hHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHH-HHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 6888999999999999999999999999999987321 1114555433 232344444555554
No 119
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=86.80 E-value=2.6 Score=37.65 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=56.1
Q ss_pred CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 251 NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 251 ~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
++.+++|.=|..+...|.-.+|.++|+..+++|- ...+.|+|++..|.++-.. .=+.+|+..|
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-----~s~~a~~A~l~la~a~y~~------------~~y~~A~~~~ 65 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-----NSPYAPQAQLMLAYAYYKQ------------GDYEEAIAAY 65 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHT------------T-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHc------------CCHHHHHHHH
Confidence 4567888888888888876666666666666663 3457899999999986543 2477889999
Q ss_pred HHhhccCCCchHHHHH
Q 036322 331 QDALHMNSDNLQVREA 346 (360)
Q Consensus 331 e~ALrLdpd~~qa~~A 346 (360)
+.-++..|+++.+-.|
T Consensus 66 ~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 66 ERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHH-TT-TTHHHH
T ss_pred HHHHHHCCCCcchhhH
Confidence 9999999999988777
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=86.26 E-value=17 Score=38.10 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 144 ~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
.-|..|.-.|-+||+++|.+..|++-=|.+||.-|+.|.
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~ 90 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKA 90 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCcc
Confidence 346778888999999999999999999999999988874
No 121
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.96 E-value=1.9 Score=46.26 Aligned_cols=94 Identities=28% Similarity=0.231 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
|..|..-|+.||.-|..-+.||||-|+--- |---+.+|.+=|-. .|..|.|=.-.|-++|.+-
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e-------~~~~ldeald~f~k--------lh~il~nn~evl~qianiy-- 568 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAE-------ALGNLDEALDCFLK--------LHAILLNNAEVLVQIANIY-- 568 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHH-------HhcCHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHH--
Confidence 456777888888888888888888886422 22223444443321 2344444444555555542
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
|-.+=-.||++.|-.|.-+=|++|+++--|.
T Consensus 569 ---e~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 569 ---ELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred ---HHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 2233345788888888889999999987654
No 122
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.59 E-value=2.7 Score=38.63 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh-----HHHHHHHHHHHHHHHHhhccCCC
Q 036322 276 FSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS-----KEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 276 ~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss-----kEk~~Ll~qA~~kye~ALrLdpd 339 (360)
+.+++..|..++...+. ...+++.||.....+-...+... ....+.+.+|+.+|-.||++.+.
T Consensus 274 ~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 274 SDEILKYYKEATKLDPS-WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHhChh-HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 45578888888887553 36799999999999988776533 26788999999999999999998
No 123
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=85.15 E-value=2.4 Score=30.66 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
+..|-+-+..++.++|+++.++++=|..+...|.- .+|..=|+.++..++ ..|++
T Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~-------~~A~~~l~~~l~~~p-~~~~~ 65 (73)
T PF13371_consen 11 YEEALEVLERALELDPDDPELWLQRARCLFQLGRY-------EEALEDLERALELSP-DDPDA 65 (73)
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH-------HHHHHHHHHHHHHCC-CcHHH
Confidence 45677788999999999999999999999987774 444555555555544 33444
No 124
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.97 E-value=25 Score=36.72 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH-----
Q 036322 231 CEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL----- 305 (360)
Q Consensus 231 aEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL----- 305 (360)
+-+-...|.+-|+.++..+|+.+.|+---|.---..+- + +-|..-|+..++.+- ++|+-++|-|+--
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~-P------E~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN-P------EMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC-h------HHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcc
Confidence 33556778889999999999999886321111111111 1 346677888998754 7899999998631
Q ss_pred -------HHhhhcCCCChHHHHHHH-------------HHHHHHHHHhhccCCCchHHHHHH
Q 036322 306 -------QQRSRLRPRNSKEKVKLL-------------QQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 306 -------qerA~lr~~sskEk~~Ll-------------~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
.+||.....++.++-.+| --|++||+=||.-||++.++++-|
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL 435 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence 244443344456777776 469999999999999999998765
No 125
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.97 E-value=11 Score=30.60 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHH
Q 036322 150 ARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLR 189 (360)
Q Consensus 150 a~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr 189 (360)
+.-+.++++.+|+++.|.+.++-+|+..|+...-+..-|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~ 47 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLE 47 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4568899999999999999999999999988866655444
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=83.94 E-value=8.2 Score=40.90 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKR 205 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r 205 (360)
.+|++.|.+|+.++|.++.-..|+||||+.-|..+ +--+.|...+-+. |...+.|..
T Consensus 357 ~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~-eai~~L~~~~~~~-p~dp~~w~~ 413 (484)
T COG4783 357 KEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ-EAIRILNRYLFND-PEDPNGWDL 413 (484)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH-HHHHHHHHHhhcC-CCCchHHHH
Confidence 46889999999999999999999999999988887 3333454444332 433344433
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=83.87 E-value=9.2 Score=40.02 Aligned_cols=91 Identities=24% Similarity=0.250 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChH
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSK 317 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ssk 317 (360)
|--.|-+|++.||+.+.|+|-=|.+----|.+ ++|+--++..+++.+ + +--|-.||+.+ -
T Consensus 57 ALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-------k~al~Dl~rVlelKp----D----F~~ARiQRg~v-----l 116 (504)
T KOG0624|consen 57 ALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-------KAALQDLSRVLELKP----D----FMAARIQRGVV-----L 116 (504)
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-------ccchhhHHHHHhcCc----c----HHHHHHHhchh-----h
Confidence 33479999999999999999988654332222 345666677777533 1 12233344331 2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 318 EKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 318 Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
=|.--+++|..-|+.+|+-+|++..+.+|-+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqs 147 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQS 147 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 2333578899999999999999888888743
No 128
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.78 E-value=72 Score=34.35 Aligned_cols=229 Identities=17% Similarity=0.179 Sum_probs=111.7
Q ss_pred cccccccccCCCCCcccchHHHHHHHHHHhhhhHHHHhhhhcCCchHHH-HHHH--------------------------
Q 036322 94 LRARESEISSSSSSKFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERA-EMIL-------------------------- 146 (360)
Q Consensus 94 ~~~~~~e~~~~~s~~~~d~~~f~~~v~ea~~Llk~are~~~~~~De~~A-d~lL-------------------------- 146 (360)
+++.-.|++|-.+-+++-+.-|+-.--|-..+.+ |-.+..-...+ .-+|
T Consensus 173 l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq----~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 173 LGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ----MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HhhcchhhhhhhhhheecCCCccHHHHHHHHHHH----HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 4566778877777777777767766666555554 33332222222 1111
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH-HHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL-RRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L-r~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
-.|.-+|+++.-++|....+..-+|--|---|.+-. .+ .| -.+++-++.. ...+++.+---+.+|
T Consensus 249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~-~~-~L~~~Lf~~~~~t----a~~wfV~~~~l~~~K-------- 314 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ-DS-ALMDYLFAKVKYT----ASHWFVHAQLLYDEK-------- 314 (564)
T ss_pred hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh-HH-HHHHHHHhhhhcc----hhhhhhhhhhhhhhh--------
Confidence 145667778888888877777777722222222110 00 11 0111111110 111122111111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH-------HHHHHHHh----ccCCCh
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI-------DNFDAMML----KGNIYA 294 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~-------dKY~AAl~----~~n~~a 294 (360)
.+++-|-.+ ..+|+.+|+.|.||.==|.+|-..+...+|-=-|.+|+ +-|+-.+. .+.+-.
T Consensus 315 ----~~~rAL~~~----eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 315 ----KFERALNFV----EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred ----hHHHHHHHH----HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 122222222 23467799999999999999988555444433333332 11211111 011101
Q ss_pred hHHHhhHHHHH-HHhhh---cC------CC-ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH-hhhhhc
Q 036322 295 PDALFGWAVAL-QQRSR---LR------PR-NSKEKVKLLQQARRLYQDALHMNSDNLQVREALS-SCMSEL 354 (360)
Q Consensus 295 p~AL~NWGlAL-qerA~---lr------~~-sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~-~c~~el 354 (360)
.-++-||.+-+ ++-|+ |. +. ..+| .|+..|+++|+++|++.-|..++. -|..|=
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rE------KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE------KAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHH------HHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 12233555432 22222 11 11 1233 489999999999999999998864 355443
No 129
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.30 E-value=3.5 Score=42.98 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL 180 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL 180 (360)
+.+|+.||+++++..|-++.-.-|-+-|||..-..
T Consensus 113 y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F 147 (536)
T KOG4648|consen 113 YEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF 147 (536)
T ss_pred hhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH
Confidence 34689999999999999999999999999965333
No 130
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.18 E-value=12 Score=36.73 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.|-+-|.+|+.++|.+-+.+.|.|-=|+..|+--.-+-. ++.++.+ |.. ...+. .+++. ..
T Consensus 87 ~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~-F~~Al~~--P~Y-~~~s~-------t~eN~--------G~ 147 (250)
T COG3063 87 LADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ-FERALAD--PAY-GEPSD-------TLENL--------GL 147 (250)
T ss_pred hHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH-HHHHHhC--CCC-CCcch-------hhhhh--------HH
Confidence 466789999999999999999999999998844322222 2223322 211 00000 11111 11
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHh
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYN 258 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYN 258 (360)
|.-=--=+..|-..|.++|++||+..-++--
T Consensus 148 Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 2110001455666899999999988776643
No 131
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=81.81 E-value=28 Score=28.70 Aligned_cols=57 Identities=18% Similarity=0.021 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
+.+|-+-+..++.+||-+-.++.-=-.++...|...+|-+.|......+..-+...|
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 355666788999999999998887778888899999999999998888887776544
No 132
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.33 E-value=6.4 Score=39.03 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhc--------ccchhcH--HHHHHHHHHHHHHHH-hccCCChh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFF--------LETAFDA--DKIFSAAIDNFDAMM-LKGNIYAP 295 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~--------~~~a~eA--e~L~~aA~dKY~AAl-~~~n~~ap 295 (360)
..|.++|...+++||.||- |.||-. |..+++| +.||.+=.|.|+-++ .+....-|
T Consensus 46 daAa~a~~~~L~ldp~D~~-----gaa~kLa~lg~~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP 111 (287)
T COG4976 46 DAAAAAYEEVLELDPEDHG-----GAALKLAVLGRGETPEKPPSAYVETLFDQYAERFDHILVDKLGYSVP 111 (287)
T ss_pred HHHHHHHHHHHcCCccccc-----chhhhHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 4578899999999999985 333322 5556665 899999999999644 44343334
No 133
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.04 E-value=1.1e+02 Score=33.68 Aligned_cols=112 Identities=21% Similarity=0.123 Sum_probs=61.5
Q ss_pred HHHHHhhHHHH--HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcH---------------------------
Q 036322 222 SLLVDACEECE--ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDA--------------------------- 272 (360)
Q Consensus 222 ~aL~~~~eEaE--eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eA--------------------------- 272 (360)
.+|++.+.-.| +--.+|.+-|..|.++=|+|+..|---|----..|+-..|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 34454444443 2235788899999999999998776544222113332222
Q ss_pred HHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 273 DKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 273 e~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
-..|+.||.-|+.+..+.+.+ .-|-+-+..-=+ |.+ -.+.|...|++.-|-=|.+...+.=
T Consensus 639 tqf~ekai~y~ekaaliqp~~-----~kwqlmiasc~r-rsg-------nyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQ-----SKWQLMIASCFR-RSG-------NYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccH-----HHHHHHHHHHHH-hcc-------cHHHHHHHHHHHHHhCccchHHHHH
Confidence 256677777777654443332 346555433222 333 2345566666666655666555444
No 134
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=78.91 E-value=18 Score=38.28 Aligned_cols=98 Identities=18% Similarity=0.145 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHcCcCChHH----HhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHH
Q 036322 145 ILHKSARLLSQAIAMQHMSLLA----VDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKI 220 (360)
Q Consensus 145 lL~~Aa~~~s~Al~~~P~s~~A----vgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~ 220 (360)
-+.+|.++|..||.++|++-+- ++|.+-++..+|+|+.-++.-=.+ -.+|... |
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-----------------l~iD~sy-----i 321 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-----------------LKIDSSY-----I 321 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh-----------------hhcCHHH-----H
Confidence 3678999999999999997653 778887777777777555431110 1122111 1
Q ss_pred HHHHH-HhhHHHHHHHHHHHHHHHHHhhhCCC--chhhHHhHHHhhh
Q 036322 221 ASLLV-DACEECEELLVKAGRKYRLALSIDGN--DVRALYNWGLALF 264 (360)
Q Consensus 221 ~~aL~-~~~eEaEeLL~eAgrKY~~Al~~dp~--d~~ALYNWGlAL~ 264 (360)
-+.++ .-|-.+-+=|.+|-+-|..|++...+ +++.|-+=-.+|.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 11122 23666667788888888888866443 7776666555555
No 135
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=78.26 E-value=73 Score=31.39 Aligned_cols=145 Identities=13% Similarity=-0.072 Sum_probs=81.8
Q ss_pred HHHHHHHHcCc----CChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 151 RLLSQAIAMQH----MSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 151 ~~~s~Al~~~P----~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
+.+.++....| .++.++..++.+|...|....- ...|+.++... |......-..++.+-.--+
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A-~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~----------- 312 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA-QEIIFDGLKKL-GDDRAISLPLCLPIPRLKP----------- 312 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH-HHHHHHHHhhC-CCcccchhHHHHHhhhcCC-----------
Confidence 37778888888 5999999999999998886543 33456666544 2221000001111110000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCch--hhHHhHHHhhhcccchhcHHHHHHHHHHHHH--HHHhccCCChhHHHhhHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDV--RALYNWGLALFFLETAFDADKIFSAAIDNFD--AMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~--~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~--AAl~~~n~~ap~AL~NWG 302 (360)
+.. ..+-+....++..+|+++ ..+..=|..+.. ...|.+|.+-|+ +++...+ .|..+.-.|
T Consensus 313 --~~~----~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-------~~~~~~A~~~le~a~a~~~~p--~~~~~~~La 377 (409)
T TIGR00540 313 --EDN----EKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-------HGEFIEAADAFKNVAACKEQL--DANDLAMAA 377 (409)
T ss_pred --CCh----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-------cccHHHHHHHHHHhHHhhcCC--CHHHHHHHH
Confidence 111 223445566778899999 665444444433 344777777777 3544433 255555667
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHH
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARR 328 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~ 328 (360)
..+-.+-. ..++.++|+++..
T Consensus 378 ~ll~~~g~-----~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGD-----KAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCC-----HHHHHHHHHHHHH
Confidence 66655432 5666666666543
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=78.09 E-value=8.1 Score=43.58 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
+.+|.+....+++..|+...+||-=|+ |..
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~-l~~ 76 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGI-LSL 76 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHH-HHH
Confidence 455555666788899999999999998 655
No 137
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=76.35 E-value=9.6 Score=28.09 Aligned_cols=57 Identities=19% Similarity=0.146 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDA 285 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~A 285 (360)
++|...+..|-+.++..-.-.|.-..+++|=|.+...-|...+|...+.+|++=|++
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 22 DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 667777777776633332223344678888888888899999999999999987753
No 138
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=75.09 E-value=89 Score=30.81 Aligned_cols=133 Identities=12% Similarity=0.038 Sum_probs=80.4
Q ss_pred CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHH
Q 036322 160 QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAG 239 (360)
Q Consensus 160 ~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAg 239 (360)
-|.++.++..++.+++..|....-. ..|+..+... | .. ++. -+-.++.. +. ...+-
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~-~~L~~~l~~~-~-~~----~l~-~l~~~l~~------------~~----~~~al 314 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQ-QIILDGLKRQ-Y-DE----RLV-LLIPRLKT------------NN----PEQLE 314 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcC-C-CH----HHH-HHHhhccC------------CC----hHHHH
Confidence 3668889999998888887776433 2455555522 2 11 100 00000100 11 12344
Q ss_pred HHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHH
Q 036322 240 RKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEK 319 (360)
Q Consensus 240 rKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk 319 (360)
+.....+...|++...++--|..+... ..|.+|.+-|++++...|. +..+.-.|.++...-.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~-------~~~~~A~~~le~al~~~P~--~~~~~~La~~~~~~g~--------- 376 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKH-------GEWQEASLAFRAALKQRPD--AYDYAWLADALDRLHK--------- 376 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCC---------
Confidence 455667788999999998888877753 4478888888888886553 4555566766554432
Q ss_pred HHHHHHHHHHHHHhhccC
Q 036322 320 VKLLQQARRLYQDALHMN 337 (360)
Q Consensus 320 ~~Ll~qA~~kye~ALrLd 337 (360)
-..|..+|+++|.+-
T Consensus 377 ---~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 ---PEEAAAMRRDGLMLT 391 (398)
T ss_pred ---HHHHHHHHHHHHhhh
Confidence 345677777776653
No 139
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=74.26 E-value=59 Score=35.10 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCC------hHHHhhhhhhHHHHHHHHHHHHH-HHHHHhccCCCcchHHHHHHhhhhhh
Q 036322 140 ERAEMILHKSARLLSQAIAMQHMS------LLAVDQLGNTYLVREELKLHFSC-KLRRLLLEGDVISVEEQKRILKGLDY 212 (360)
Q Consensus 140 ~~Ad~lL~~Aa~~~s~Al~~~P~s------~~Avgn~GNalL~~GeLKl~~s~-~Lr~lla~~~p~s~~~~~r~~~~ld~ 212 (360)
+.+-..|..|+++|..-+++-... -.|+|||||||-+.|-....|-- ++|..++..--. |..++
T Consensus 165 ~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeR 235 (639)
T KOG1130|consen 165 AEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAER 235 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHH
Confidence 345678999999999999883332 35789999999998877665443 444434332100 11112
Q ss_pred hhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH----hhhCCCch--hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHH
Q 036322 213 QFMNKDKIASLLVDACEECEELLVKAGRKYRLA----LSIDGNDV--RALYNWGLALFFLETAFDADKIFSAAIDNFDAM 286 (360)
Q Consensus 213 ~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~A----l~~dp~d~--~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AA 286 (360)
|.-+ +|+..-+..+ -+.-|.+.|..+ +++.-.-. .--|.-|.++-. -+=|..||+-+..-
T Consensus 236 RA~s--NlgN~hiflg-----~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-------l~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 236 RAHS--NLGNCHIFLG-----NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-------LKEVQKAITYHQRH 301 (639)
T ss_pred Hhhc--ccchhhhhhc-----ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHH
Confidence 2211 3344333322 134455566554 22222111 112333333222 23467788877653
Q ss_pred Hhc----cCC-ChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhhhhhc
Q 036322 287 MLK----GNI-YAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN--LQVREALSSCMSEL 354 (360)
Q Consensus 287 l~~----~n~-~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c~~el 354 (360)
+.+ .+. ..--|++..|+|..-+. +.++-+.=|..-.+-++.++--+ ..++.-|+.-+-||
T Consensus 302 LaIAqeL~DriGe~RacwSLgna~~alg--------~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~l 368 (639)
T KOG1130|consen 302 LAIAQELEDRIGELRACWSLGNAFNALG--------EHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILEL 368 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHh
Confidence 332 221 11356666676665443 44455555655556666665333 23444455444444
No 140
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.87 E-value=27 Score=36.54 Aligned_cols=49 Identities=27% Similarity=0.244 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
++.|.|-|+.|+.-||+...||.|-|+--.-.|.-.+|..|+..|-.+-
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 5789999999999999999999999887666899999999999887653
No 141
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=73.83 E-value=89 Score=35.74 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH-HHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL-RRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L-r~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.|.+++..+|.++|-.+.|++.||-.|=.+|...+-.-..| .+-|--++ -..|.++..-.+.
T Consensus 157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d---~e~W~~ladls~~-------------- 219 (895)
T KOG2076|consen 157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD---YELWKRLADLSEQ-------------- 219 (895)
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHh--------------
Confidence 34555667788899999999999999999997765443333 22232222 2456665432221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhh
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF 264 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~ 264 (360)
-..+.+|.=-|-+||+++|.+.+-+|+=.--+.
T Consensus 220 -----~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 220 -----LGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred -----cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 123455555777777777777666665544443
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=73.19 E-value=22 Score=30.50 Aligned_cols=67 Identities=25% Similarity=0.235 Sum_probs=41.4
Q ss_pred hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 254 RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 254 ~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
+++|+=+.++-..|...+|..+|.+|++. .+.......++.+.|..|+.+-+ ..|+..+|++++..|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~-----~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGR-----YDEALALLEEALEEF 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHC
Confidence 45666666665566655555555554431 12333557899999999998875 456666666665443
No 143
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=72.94 E-value=37 Score=25.42 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHH--cCcCChHHHhhhhhhHHHHHH
Q 036322 147 HKSARLLSQAIA--MQHMSLLAVDQLGNTYLVREE 179 (360)
Q Consensus 147 ~~Aa~~~s~Al~--~~P~s~~Avgn~GNalL~~Ge 179 (360)
..+...+..++. ..|....++..+|+.+...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 76 EEALELLEKALELELLPNLAEALLNLGLLLEALGK 110 (291)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh
Confidence 445555555554 567777777777776666654
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=71.02 E-value=15 Score=27.80 Aligned_cols=37 Identities=5% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCcC--ChHHHhhhhhhHHHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHM--SLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~--s~~Avgn~GNalL~~GeLKl 182 (360)
...|+..|.++++..|. +...++++|.+|...|+-+.
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~ 43 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEE 43 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHH
Confidence 45788999999999996 46678888999998777664
No 145
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.98 E-value=8.6 Score=23.75 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=24.9
Q ss_pred HHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 296 DALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 296 ~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
+|+|+.|..+... .-+.+|+..|+.++..-|++
T Consensus 1 ~a~~~~a~~~~~~------------g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKL------------GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHH------------CHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHc------------cCHHHHHHHHHHHHHHCcCC
Confidence 5788888886543 35677888888888888875
No 146
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=68.97 E-value=12 Score=24.03 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=24.7
Q ss_pred HHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 296 DALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 296 ~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
.+++|-|.++..+-+ -.|+..++++|...+++. +-||.|
T Consensus 3 ~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~--~G~~Hp 41 (42)
T PF13374_consen 3 SALNNLANAYRAQGR-----YEEALELLEEALEIRERL--LGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHCT------HHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhhhh-----cchhhHHHHHHHHHHHHH--hccccc
Confidence 578899999887754 568999999999999887 444444
No 147
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.65 E-value=4.7 Score=24.94 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=25.0
Q ss_pred hhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 254 RALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 254 ~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
+|+|+-|.+....|...+|...|...+++|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 588999988888888888888888888776
No 148
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=67.83 E-value=32 Score=35.23 Aligned_cols=85 Identities=14% Similarity=0.061 Sum_probs=62.0
Q ss_pred chhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHH
Q 036322 252 DVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARR 328 (360)
Q Consensus 252 d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ 328 (360)
.|-.-+-.|.||.- +|+...|..++..+ +.......|+.|.-||-.+.++..-.... -.+.+.+|+.
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~-------l~~~~~~~~d~~gL~GRIyKD~~~~s~~~---d~~~ldkAi~ 247 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPV-------LESDENPDPDTLGLLGRIYKDLFLESNFT---DRESLDKAIE 247 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHH-------HhccCCCChHHHHHHHHHHHHHHHHcCcc---chHHHHHHHH
Confidence 44444556777777 88777777776655 44455567999999999999997533222 2223999999
Q ss_pred HHHHhhccCCCchHHHHH
Q 036322 329 LYQDALHMNSDNLQVREA 346 (360)
Q Consensus 329 kye~ALrLdpd~~qa~~A 346 (360)
.|+++.+++|+.--.-|+
T Consensus 248 ~Y~kgFe~~~~~Y~GIN~ 265 (374)
T PF13281_consen 248 WYRKGFEIEPDYYSGINA 265 (374)
T ss_pred HHHHHHcCCccccchHHH
Confidence 999999999987766665
No 149
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=66.44 E-value=17 Score=32.71 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhc--cCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 275 IFSAAIDNFDAMMLK--GNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 275 L~~aA~dKY~AAl~~--~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
-|.+|++.|+..... ...++++|...-|-|+-... =+..|+.-|+.=|+|+|++|++--|
T Consensus 25 ~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~------------~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 25 NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG------------DYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCCCCccHH
Confidence 366677777654443 33478999999999976544 3567888899999999999988666
No 150
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.36 E-value=98 Score=31.38 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=62.8
Q ss_pred hhhhhhcccCCCCCCCCcccccccccc---------cc-ccCCCCCcccchH--HHHHHHHH-HhhhhHHHHhhhhcCCc
Q 036322 72 IYSSMLREEKVNPEDDSHLTDHLRARE---------SE-ISSSSSSKFIDDV--MFDRYLTE-ANDLPKHAKECMKSGWD 138 (360)
Q Consensus 72 ~~~s~~~~~~~~~~~~~~l~~~~~~~~---------~e-~~~~~s~~~~d~~--~f~~~v~e-a~~Llk~are~~~~~~D 138 (360)
.|+-+|.=.+||.+++..++....++- +- +.+=.+..+.+-. ..++++.- -...+.++++.+..++-
T Consensus 71 ~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~ 150 (304)
T COG3118 71 EYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDF 150 (304)
T ss_pred HhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccch
Confidence 466677778888888877766654432 10 1111222221111 13333332 33345666666555543
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH
Q 036322 139 EERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL 180 (360)
Q Consensus 139 e~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL 180 (360)
..++.+|.+|++..|.+.+|...++-+|+..|..
T Consensus 151 --------~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~ 184 (304)
T COG3118 151 --------GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDV 184 (304)
T ss_pred --------hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCCh
Confidence 3567788999999999999999999999998876
No 151
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.36 E-value=3.5 Score=26.10 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=23.2
Q ss_pred HHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 296 DALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 296 ~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
.+|+.-|..+.++- =+..|+..|++|+.++|++
T Consensus 2 ~~~~~lg~~y~~~~------------~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG------------DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT------------SHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCC
Confidence 35566666655543 3578999999999999964
No 152
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=64.43 E-value=41 Score=37.67 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
..|.+.|-..++.+|+...|.-|-..|..--+.-+.|-+.+.+|.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 445567888888888888888887777776666555555555554
No 153
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.25 E-value=1.5e+02 Score=29.53 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCCh-----HHHhhhhhhHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSL-----LAVDQLGNTYLVREELKLHFS 185 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~-----~Avgn~GNalL~~GeLKl~~s 185 (360)
+|+.-+..+.++..|-++|-++.+.|+=+ .|...|+.||++=|.-+ .-++|=|-|++..+.-+..|-
T Consensus 84 ~deek~k~~~kad~lK~EGN~~F~ngdye--------eA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 84 SDEEKDKAIEKADSLKKEGNELFKNGDYE--------EANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcccHH--------HHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 45677788888999999999888887654 46788999999977644 345566655554332221111
Q ss_pred HHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHH--HHHHHHHHHHHHHhhhCCCchhhHHhHHHhh
Q 036322 186 CKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECE--ELLVKAGRKYRLALSIDGNDVRALYNWGLAL 263 (360)
Q Consensus 186 ~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaE--eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL 263 (360)
. -+-. +.-++ -+..||...++-.| +-+.+|-.-|...++.||..+.|=- |++=
T Consensus 156 d-------csKa--iel~p--------------ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~--~i~r 210 (271)
T KOG4234|consen 156 D-------CSKA--IELNP--------------TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE--AIAR 210 (271)
T ss_pred H-------HHhh--HhcCc--------------hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH--HHHh
Confidence 1 0000 00000 01223333343333 5678899999999999999887632 2222
Q ss_pred hcccchhcHHHHHHHHHHHHH
Q 036322 264 FFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 264 ~~~~~a~eAe~L~~aA~dKY~ 284 (360)
-.|...--=++|=.+++.|..
T Consensus 211 l~~~i~ernEkmKee~m~kLK 231 (271)
T KOG4234|consen 211 LPPKINERNEKMKEEMMEKLK 231 (271)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 223333334566666666654
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=61.27 E-value=96 Score=25.87 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCcCC---hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 150 ARLLSQAIAMQHMS---LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 150 a~~~s~Al~~~P~s---~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
...+...+.-.|++ ..|...+|.++..-|.+.. -...|+.++.....+.. ..+ -+..++..++.
T Consensus 31 ~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~-A~~~l~~~~~~~~d~~l---~~~---------a~l~LA~~~~~ 97 (145)
T PF09976_consen 31 EAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDE-AKAALEKALANAPDPEL---KPL---------ARLRLARILLQ 97 (145)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHhhCCCHHH---HHH---------HHHHHHHHHHH
Confidence 44566777778888 6777888898888887765 33356676765521111 111 12234444443
Q ss_pred hh--HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc--ccchhcHHHHHHHHH
Q 036322 227 AC--EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF--LETAFDADKIFSAAI 280 (360)
Q Consensus 227 ~~--eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~--~~~a~eAe~L~~aA~ 280 (360)
.. ++|..+|.. +.++...+++.+-..-.. -|...+|...|..|+
T Consensus 98 ~~~~d~Al~~L~~----------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQ----------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHh----------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 32 444444421 345556666666433333 777777877777763
No 155
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.20 E-value=29 Score=36.93 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
.-+..|...|-.||+++||-.--+-|=..|-- ...-|..|..-...+++..+.| -.+|+.=|.|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~l-------K~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a-------- 81 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHL-------KVESFGGALHDALKAIELDPTY-IKAYVRRGTA-------- 81 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhhe-------eechhhhHHHHHHhhhhcCchh-hheeeeccHH--------
Confidence 44677888999999999976543333222211 2233455555566666654443 4666666655
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
--+..-.++|..-|+....+.|++++++-.+..|-
T Consensus 82 ----~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 82 ----VMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred ----HHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 34444678899999999999999999999988773
No 156
>PRK15331 chaperone protein SicA; Provisional
Probab=60.01 E-value=1.3e+02 Score=27.89 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.+|-+-|+...-.||.+++=.+|+|.+.+. -+-|.+|++=|.-+..+ ....|-..|.=|.=+-.+-.
T Consensus 54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-------~k~y~~Ai~~Y~~A~~l-~~~dp~p~f~agqC~l~l~~----- 120 (165)
T PRK15331 54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQL-------KKQFQKACDLYAVAFTL-LKNDYRPVFFTGQCQLLMRK----- 120 (165)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHc-ccCCCCccchHHHHHHHhCC-----
Confidence 444455666667899999988887777664 56688999999854443 23446666666654333221
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
.. .|..+|+-|+. +|.+++.++--.+..+.|+
T Consensus 121 ~~-------~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 121 AA-------KARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred HH-------HHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 22 34556666655 6888877765444444443
No 157
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.87 E-value=1.1e+02 Score=28.42 Aligned_cols=52 Identities=23% Similarity=0.468 Sum_probs=33.1
Q ss_pred cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHh
Q 036322 267 ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDA 333 (360)
Q Consensus 267 ~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~A 333 (360)
+..+|..+-|..+-++|++++.+ +. .+.+-+|..-+|....|..+.++|+.+
T Consensus 101 ~~vKE~kk~Fdk~s~~yd~al~k-~~--------------~~~K~K~~~~~Ea~~~L~~~Rk~f~~~ 152 (200)
T cd07603 101 KKVKESKKHFEKISDDLDNALVK-NA--------------QAPRSKPQEAEEATNILTATRSCFRHT 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hh--------------ccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998885 11 111112222345555666666666654
No 158
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.20 E-value=11 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 322 LLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 322 Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
=...|.++-+.+|+++|+|.||+.=...
T Consensus 16 ~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 16 EYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp -HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 3567888999999999999999864433
No 159
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=56.47 E-value=2.9e+02 Score=29.83 Aligned_cols=152 Identities=18% Similarity=0.025 Sum_probs=90.9
Q ss_pred cCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcc---hHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHH
Q 036322 161 HMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVIS---VEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVK 237 (360)
Q Consensus 161 P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s---~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~e 237 (360)
|..+.|.|-|+-++.+-|+.+.- ...|+.|+.+- |-. ....+.|.-+.. | ..+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A-~~~l~~L~~~~-P~N~~~~~~~~~i~~~~n-----k-----------------~~~ 358 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEA-LKLLQPLIAAQ-PDNPYYLELAGDILLEAN-----K-----------------AKE 358 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-----C-----------------hHH
Confidence 78888999998888877766432 22455555543 221 111222222221 1 256
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC--C
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR--N 315 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~--s 315 (360)
|.+.|++|+..+|+..=-=+|.|.+|...|...+|.+++..... .++..|..++-.+-|..+.-..... .
T Consensus 359 A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 359 AIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 78899999999999977779999999997776677666654432 2333466666666666555442221 1
Q ss_pred hHHHHHH---HHHHHHHHHHhhccC-CCchHHH
Q 036322 316 SKEKVKL---LQQARRLYQDALHMN-SDNLQVR 344 (360)
Q Consensus 316 skEk~~L---l~qA~~kye~ALrLd-pd~~qa~ 344 (360)
.+|.-.+ |+||+.-+..|.+.. .++++-.
T Consensus 431 ~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a 463 (484)
T COG4783 431 RAEGYALAGRLEQAIIFLMRASQQVKLGFPDWA 463 (484)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence 1222221 566666666666554 6666544
No 160
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.13 E-value=2.3e+02 Score=28.66 Aligned_cols=164 Identities=23% Similarity=0.251 Sum_probs=93.3
Q ss_pred CCCCcccchHHHHHHHHHHhhhhHHHHhhhhcC--Cch-HHH----HHHH-------HHHHHHHHHHHHcCcCChHHHhh
Q 036322 104 SSSSKFIDDVMFDRYLTEANDLPKHAKECMKSG--WDE-ERA----EMIL-------HKSARLLSQAIAMQHMSLLAVDQ 169 (360)
Q Consensus 104 ~~s~~~~d~~~f~~~v~ea~~Llk~are~~~~~--~De-~~A----d~lL-------~~Aa~~~s~Al~~~P~s~~Avgn 169 (360)
|.|.++ ..|....=||+..-+.|-+-...- ||| ..+ ..++ -.+++-+-.-++.=|.|++|.-.
T Consensus 83 p~S~RV---~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~e 159 (289)
T KOG3060|consen 83 PGSKRV---GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHE 159 (289)
T ss_pred CCChhH---HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHH
Confidence 666666 456666666666666655543221 222 111 0011 14666777777788999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhC
Q 036322 170 LGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSID 249 (360)
Q Consensus 170 ~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~d 249 (360)
+.+.|+.-|..++..-+ |-.++--. |.. +..+..+ +..+. ..-+-+.+..|-+.|.+|+.++
T Consensus 160 LaeiY~~~~~f~kA~fC-lEE~ll~~-P~n----~l~f~rl----------ae~~Y--t~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFC-LEELLLIQ-PFN----PLYFQRL----------AEVLY--TQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHhHhHHHHHHHH-HHHHHHcC-CCc----HHHHHHH----------HHHHH--HHhhHHHHHHHHHHHHHHHHhC
Confidence 99999999888876444 22333232 432 2222211 11111 1222466777888999999999
Q ss_pred CCchhhHHh-----HHHh-hhc--ccchhc--HHHHHHHHHHHHHHHHh
Q 036322 250 GNDVRALYN-----WGLA-LFF--LETAFD--ADKIFSAAIDNFDAMML 288 (360)
Q Consensus 250 p~d~~ALYN-----WGlA-L~~--~~~a~e--Ae~L~~aA~dKY~AAl~ 288 (360)
|.+.+|||+ |.|| ++- .+.-++ |-++-.-|..++....+
T Consensus 222 ~~~~ral~GI~lc~~~la~~sk~~~k~~K~~a~~~l~~~aas~l~r~~q 270 (289)
T KOG3060|consen 222 PKNLRALFGIYLCGSALAQISKAELKRKKDVAAPDLISLAASQLERISQ 270 (289)
T ss_pred hHhHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhHHHhHHHHHHHHHH
Confidence 999999984 5554 333 122222 44444445555554443
No 161
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=55.26 E-value=64 Score=31.19 Aligned_cols=30 Identities=43% Similarity=0.465 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
-+||+++|.+ |++.+|++.++|.|= ++++.
T Consensus 217 ~~eAe~~L~~-------al~~~~~~~d~LaNl-iv~~~ 246 (290)
T PF04733_consen 217 YEEAEELLEE-------ALEKDPNDPDTLANL-IVCSL 246 (290)
T ss_dssp HHHHHHHHHH-------HCCC-CCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHH-------HHHhccCCHHHHHHH-HHHHH
Confidence 3777776665 689999999999995 44443
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=55.15 E-value=44 Score=25.21 Aligned_cols=67 Identities=19% Similarity=0.373 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhccCCC-hhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 276 FSAAIDNFDAMMLKGNIY-APDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 276 ~~aA~dKY~AAl~~~n~~-ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
|..|+.=|++++...+.. .+..+++-|..+..... .++|+..++. +.++|.+++..--+..|--+|
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~------------y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK------------YEEAIELLQK-LKLDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH------------HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC------------HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh
Confidence 567777777777764432 45666666777665542 5677777777 888888888877777887766
Q ss_pred c
Q 036322 355 N 355 (360)
Q Consensus 355 ~ 355 (360)
+
T Consensus 72 ~ 72 (84)
T PF12895_consen 72 G 72 (84)
T ss_dssp T
T ss_pred C
Confidence 5
No 163
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=55.07 E-value=87 Score=23.44 Aligned_cols=154 Identities=20% Similarity=0.199 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhh-hHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGN-TYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GN-alL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
+..+.+.+.+++...|.+..+....+. ++...|+....+..--+ ++. ..|.. ......+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~-~~~~~------------------~~~~~~~ 170 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK-ALE-LDPEL------------------NELAEAL 170 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH-HHh-cCCCc------------------cchHHHH
Confidence 457889999999988877555544554 56666665544332112 122 22210 0000011
Q ss_pred HHhh--HHHHHHHHHHHHHHHHHhhhCCC-chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 225 VDAC--EECEELLVKAGRKYRLALSIDGN-DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 225 ~~~~--eEaEeLL~eAgrKY~~Al~~dp~-d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
...+ -........|...|..++...+. ...++++.|..+...+ .+.+|+.-|..++...+. ....+...
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~a~~~~~~~~~~~~~-~~~~~~~~ 242 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG-------KYEEALEYYEKALELDPD-NAEALYNL 242 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-------cHHHHHHHHHHHHhhCcc-cHHHHhhH
Confidence 1111 11223567888899999999999 7999999998888755 445666666655554232 24566666
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
+..+. ... .+..+...++.++..+|+
T Consensus 243 ~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 243 ALLLL-ELG-----------RYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHH-HcC-----------CHHHHHHHHHHHHHhCcc
Confidence 66655 221 567788888888888886
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=54.60 E-value=94 Score=28.77 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 231 CEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 231 aEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
.-.-+..|..-|..|..++++|++..|-=|.-.-.-+....|..-|..|+++
T Consensus 83 ~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 83 LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 3456788889999999999999999998887666677788888888888873
No 165
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.42 E-value=1.1e+02 Score=32.08 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLH 183 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~ 183 (360)
..|++.+.++|+++|.+..|+|.=|-||+..|+..+.
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A 310 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLA 310 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHH
Confidence 4788999999999999999999999999999988764
No 166
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.22 E-value=1.9e+02 Score=29.23 Aligned_cols=114 Identities=25% Similarity=0.242 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-ccchhcH---------------------------HHHHHHHHH
Q 036322 230 ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF-LETAFDA---------------------------DKIFSAAID 281 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-~~~a~eA---------------------------e~L~~aA~d 281 (360)
|+-+.+.+|...|..-++=||+|.-.+- =-+|+.- .|-..+| +--|+.||=
T Consensus 97 Ea~~~~~~A~e~y~~lL~ddpt~~v~~K-RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDDPTDTVIRK-RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HHhhchhhHHHHHHHHhccCcchhHHHH-HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 4556677788888888888998875554 3333333 2222222 234566666
Q ss_pred HHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 282 NFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 282 KY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
=|+.++...|. .|--+-..|-.+--. ++ .|. +..|..+|++||.++|.+.-++=.|.-|-+-|
T Consensus 176 ClEE~ll~~P~-n~l~f~rlae~~Yt~----gg--~eN---~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 176 CLEELLLIQPF-NPLYFQRLAEVLYTQ----GG--AEN---LELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHcCCC-cHHHHHHHHHHHHHH----hh--HHH---HHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 67777766554 242222222222111 11 233 56789999999999998888888888886544
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=53.30 E-value=94 Score=33.24 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhCCCchhh----HHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 235 LVKAGRKYRLALSIDGNDVRA----LYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~A----LYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+..|.+.|-.||.+||+..+. |+|=+++..--|...|| +.--..++.+ +.=|.|++-.+-.+.
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ea-------isdc~~Al~i------D~syikall~ra~c~ 331 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREA-------ISDCNEALKI------DSSYIKALLRRANCH 331 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhh-------hhhhhhhhhc------CHHHHHHHHHHHHHH
Confidence 567888999999999975543 56666665554443332 2222233332 223445444333332
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
....=|+-|++-|+.|+++.-+ +..+.-|..-.
T Consensus 332 -------l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~ 364 (486)
T KOG0550|consen 332 -------LALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQ 364 (486)
T ss_pred -------HHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHH
Confidence 3334466666666666666655 44444444333
No 168
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.32 E-value=63 Score=32.40 Aligned_cols=44 Identities=30% Similarity=0.241 Sum_probs=36.8
Q ss_pred HHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 241 KYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 241 KY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
--++|++++|+..++.|.=|.++.....-.+|-+.+..|-+-++
T Consensus 66 dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 66 DCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred hHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 44679999999999999999999997777777777777777665
No 169
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.63 E-value=35 Score=35.31 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=42.9
Q ss_pred HHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 118 YLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 118 ~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
.++-|++.=-||-|..-.|. +..|+..|..||+++|.+...+.+=++++|..+.=+.
T Consensus 110 ~~eqa~e~k~~A~eAln~G~--------~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~ 166 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDGE--------FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNA 166 (377)
T ss_pred HHHHHHHHHHHHHHHhcCcc--------hhhhhcccccccccCCchhhhcccccceeeeccCCch
Confidence 34445555555555554444 8999999999999999999999999999997544443
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.23 E-value=1.5e+02 Score=29.23 Aligned_cols=95 Identities=24% Similarity=0.297 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
|..|...|+.=+.-=|++ ..|+|=-|=.+---+.-.+|...|..++..|- ++++ +|++|+--|.-+..+-.
T Consensus 157 y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P----~s~K-ApdallKlg~~~~~l~~- 230 (262)
T COG1729 157 YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP----KSPK-APDALLKLGVSLGRLGN- 230 (262)
T ss_pred HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC----CCCC-ChHHHHHHHHHHHHhcC-
Confidence 455566666666666665 46788666666557777777777777777664 4554 79999999998776653
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
..++.+.|++ ++.-=|+.+.++.|
T Consensus 231 ----~d~A~atl~q-------v~k~YP~t~aA~~A 254 (262)
T COG1729 231 ----TDEACATLQQ-------VIKRYPGTDAAKLA 254 (262)
T ss_pred ----HHHHHHHHHH-------HHHHCCCCHHHHHH
Confidence 4455555554 55555888877765
No 171
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=49.75 E-value=12 Score=24.98 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhccC
Q 036322 322 LLQQARRLYQDALHMN 337 (360)
Q Consensus 322 Ll~qA~~kye~ALrLd 337 (360)
-+++|+.+|+.||.+.
T Consensus 14 ~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 14 DYEKAIEYYEQALALA 29 (36)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 5788999999966443
No 172
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.16 E-value=1.7e+02 Score=31.77 Aligned_cols=101 Identities=17% Similarity=0.082 Sum_probs=69.9
Q ss_pred ccccccccccccCCCCCcccchHHHHH------HHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCCh
Q 036322 91 TDHLRARESEISSSSSSKFIDDVMFDR------YLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSL 164 (360)
Q Consensus 91 ~~~~~~~~~e~~~~~s~~~~d~~~f~~------~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~ 164 (360)
.|-+.-+-.|+ ..-++++-.++.+.. +...-.+.+..|.+.+.|-+|...+...|+.|.+.+...-+++|.-.
T Consensus 187 ~d~L~fq~~El-e~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~ 265 (557)
T COG0497 187 ADLLQFQLEEL-EELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLS 265 (557)
T ss_pred HHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHH
Confidence 34445555566 333444445555432 22334455677788888866777889999999999999999999888
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 036322 165 LAVDQLGNTYLVREELKLHFSCKLRRLLLEGD 196 (360)
Q Consensus 165 ~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~ 196 (360)
.++-.+.++|....+.. .+|++.+.+-+
T Consensus 266 ~~~~~l~ea~~~l~ea~----~el~~~~~~le 293 (557)
T COG0497 266 ELAELLEEALYELEEAS----EELRAYLDELE 293 (557)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhcCC
Confidence 88899999999765444 57777776653
No 173
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=47.62 E-value=3.7e+02 Score=28.44 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 323 LQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 323 l~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
++.|...+++.+.++|++...-..|.++
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 3456667788889999887655555543
No 174
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=47.14 E-value=43 Score=33.45 Aligned_cols=78 Identities=24% Similarity=0.276 Sum_probs=55.4
Q ss_pred hhcCCchHHHHHHHH-----H-------HHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch
Q 036322 133 MKSGWDEERAEMILH-----K-------SARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV 200 (360)
Q Consensus 133 ~~~~~De~~Ad~lL~-----~-------Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~ 200 (360)
+++-.+|++|..++. . |--=|+++++++|.-+++..-||--|++-|.
T Consensus 56 ~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--------------------- 114 (297)
T COG4785 56 SRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------------- 114 (297)
T ss_pred hccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc---------------------
Confidence 567788999976643 2 3344899999999999988888844432111
Q ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 201 EEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 201 ~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
+-.|-..|...+++||+.-=|.-|=||+|-.
T Consensus 115 ----------------------------------fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 115 ----------------------------------FDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred ----------------------------------chHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 1233446788888888888888888888766
No 175
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.64 E-value=1.6e+02 Score=24.52 Aligned_cols=42 Identities=14% Similarity=-0.069 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHH
Q 036322 235 LVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIF 276 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~ 276 (360)
+.+|...|..++.-.|+. .-|.++++.++...+...+|-.++
T Consensus 64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566677777665543 346666666666666655555554
No 176
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.09 E-value=58 Score=28.98 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=37.4
Q ss_pred hhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH
Q 036322 123 NDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE 179 (360)
Q Consensus 123 ~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge 179 (360)
..++++|++.+..|+ .+.|+.+...++..+|++..|..-..++|-.+|.
T Consensus 71 d~vl~~A~~~~~~gd--------~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGD--------YQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT---------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 578888888877766 6789999999999999999998888877765443
No 177
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=45.75 E-value=2.4e+02 Score=26.54 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC-CCcchHHHHHHhhhhhhhhcchh
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEG-DVISVEEQKRILKGLDYQFMNKD 218 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~-~p~s~~~~~r~~~~ld~~~~~k~ 218 (360)
|..|.++|.+||.+-|..+-|+.|-+-||-+.|..... ..-|-.++.=. +.....-+.-+.||+=.|....+
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~A-LdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEA-LDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHH-HHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 66789999999999999999999999999876654432 22233333222 22222224445566555443333
No 178
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=45.34 E-value=36 Score=21.73 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=26.6
Q ss_pred hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHh
Q 036322 254 RALYNWGLALFFLETAFDADKIFSAAIDNFDAMML 288 (360)
Q Consensus 254 ~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~ 288 (360)
.++.|=|.++...|.-.+|..++.+|.+-+++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence 57888899999999999999999999999886644
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=44.35 E-value=46 Score=34.12 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
..|.++..+|+.+.|++-+..+.|+.+|...|..+.
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ 286 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFEN 286 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHH
Confidence 345666777788888888888888888887766553
No 180
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=44.25 E-value=1.9e+02 Score=29.92 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=75.8
Q ss_pred hhhhcccCCCCCCCCccccccccccccccCCCCCcccchHHHHHHHHHHhhhhH------------HHHhhhhcC---Cc
Q 036322 74 SSMLREEKVNPEDDSHLTDHLRARESEISSSSSSKFIDDVMFDRYLTEANDLPK------------HAKECMKSG---WD 138 (360)
Q Consensus 74 ~s~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~s~~~~d~~~f~~~v~ea~~Llk------------~are~~~~~---~D 138 (360)
-||+-.|++--..--+|+|+--.+|.||...+ .-...++.-.+..|+ -+---++|. -+
T Consensus 8 a~Q~~sEK~ggae~TkLdDdF~eme~~vdvt~-------~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~k~~~ 80 (366)
T KOG1118|consen 8 ASQWTSEKVGGAEGTKLDDDFLEMEKEVDVTS-------KGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQVKEKG 80 (366)
T ss_pred HHHHhccccccccCCcCChHHHHHHHhHHHHH-------HHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccccCCC
Confidence 36777888877778899999999999984221 112223333333332 111123333 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH
Q 036322 139 EERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL 188 (360)
Q Consensus 139 e~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L 188 (360)
....+-+|-.++-.|.+.|--+-+--.++...|-++..-|++|-.+...+
T Consensus 81 ypq~e~~Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~v 130 (366)
T KOG1118|consen 81 YPQTEGLLGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNV 130 (366)
T ss_pred CccchhHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999998765554
No 181
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=43.25 E-value=60 Score=36.48 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=62.7
Q ss_pred CCCchhhHHhHHHhhhcc--------------cchhcH-------HHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 249 DGNDVRALYNWGLALFFL--------------ETAFDA-------DKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 249 dp~d~~ALYNWGlAL~~~--------------~~a~eA-------e~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+|+||..|--=|=++.+| +.+.-. .+=|.++-+-|+..+.+-+ -.++.+|+.|-+
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~--- 528 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCA--- 528 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHH---
Confidence 788998887666666661 111111 2457778888888777644 458999999977
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
.=+.+-++.|+..|-..+.++||+.++-+-|+
T Consensus 529 ---------ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls 560 (777)
T KOG1128|consen 529 ---------ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS 560 (777)
T ss_pred ---------HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence 23334578899999999999999999887665
No 182
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.00 E-value=46 Score=35.44 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=59.0
Q ss_pred HHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch
Q 036322 121 EANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV 200 (360)
Q Consensus 121 ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~ 200 (360)
.|+.+-.||.+.++.. -+..|+.+|++||+++|....-..|=.-|++.-+..--++-..+.++ .. +|..
T Consensus 3 ~a~e~k~ean~~l~~~--------~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai-e~-dP~~- 71 (476)
T KOG0376|consen 3 SAEELKNEANEALKDK--------VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI-EL-DPTY- 71 (476)
T ss_pred hhhhhhhHHhhhcccc--------hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh-hc-Cchh-
Confidence 3556666777665543 47788999999999999776666665555554433333333333221 11 1221
Q ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhH
Q 036322 201 EEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRAL 256 (360)
Q Consensus 201 ~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~AL 256 (360)
...=+.||... ++ -.=+.+|.+-|.....++|++.+|.
T Consensus 72 -~K~Y~rrg~a~---m~--------------l~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 72 -IKAYVRRGTAV---MA--------------LGEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred -hheeeeccHHH---Hh--------------HHHHHHHHHHHHHhhhcCcCcHHHH
Confidence 11111222110 00 1224567777788888888888775
No 183
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=42.77 E-value=73 Score=35.88 Aligned_cols=92 Identities=22% Similarity=0.312 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC----CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDG----NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp----~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
+.||-+--.--.++|..|++++- +-..|.--||+|+--.+ . +.+|-+||.++..++..+-|++.+.
T Consensus 558 asecLRdqLie~ErYqlaV~mckKc~iD~f~aW~AWGlA~Lk~e------~-~aaAR~KFkqafklkgedipdvi~d--- 627 (1141)
T KOG1811|consen 558 ASECLRDQLIEAERYQLAVEMCKKCGIDTFGAWHAWGLACLKAE------N-LAAAREKFKQAFKLKGEDIPDVIFD--- 627 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHhh------h-HHHHHHHHHHHhCCCCCccchHHHH---
Confidence 46666544555678999998853 67889999999998733 2 4688899999998765566776543
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHM 336 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrL 336 (360)
.-.+-.+ -..+.++.-.++|+--.+-
T Consensus 628 ----iin~ieG---gpp~dVq~Vrem~dhlak~ 653 (1141)
T KOG1811|consen 628 ----IINLIEG---GPPRDVQDVREMLDHLAKP 653 (1141)
T ss_pred ----HHHhhcC---CCcchHHHHHHHHHHhccC
Confidence 3333222 1234566666666655443
No 184
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.77 E-value=36 Score=27.66 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=31.5
Q ss_pred HHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc
Q 036322 241 KYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 241 KY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
..++++.-+|+|++|.|..+.++...|. +++|++.+-.++..
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~-------~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGD-------YEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHh
Confidence 5677888999999999999999988766 45666666666654
No 185
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.10 E-value=58 Score=34.00 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 277 SAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 277 ~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
+.|..-|+-|+.+.++ -||+|-..|.- .|--+=+-+|-.||-+||.++|.+.+|+
T Consensus 133 ekA~~lfeHAlalaP~-~p~~L~e~G~f------------~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPT-NPQILIEMGQF------------REMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHhHH------------HHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 3445556666776665 49999999987 2333456689999999999999999876
No 186
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=40.95 E-value=2.4e+02 Score=26.45 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC---ChhHHHhhHHHHHHHh
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI---YAPDALFGWAVALQQR 308 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~---~ap~AL~NWGlALqer 308 (360)
|-.|-++|..||.++|....||.|-+-|+-..++. +.|.|....++++.+. -+-+||+--|+-++-+
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~-------e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDD-------EEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh-------HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999988875553 4566667777776432 2348888888765443
No 187
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=38.97 E-value=1.1e+02 Score=27.31 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHhhH--------HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 204 KRILKGLDYQFMNKDKIASLLVDACE--------ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 204 ~r~~~~ld~~~~~k~~~~~aL~~~~e--------EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
++++..+-.+.. ..+...+..+++ -..+.+.++.+++...+.++++|...|.+.|-.|+.
T Consensus 52 ~eal~~i~~~~~--~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~ 119 (170)
T PF09548_consen 52 PEALERISRRSE--GPIGEFFERVAERLEKNEGESFAEAWEEAVEKLLKESALKKEDKEILLELGKSLGY 119 (170)
T ss_pred HHHHHHHHhccc--chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcc
Confidence 445555444332 234444444432 345899999999999999999999999999999998
No 188
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=37.41 E-value=1.4e+02 Score=24.53 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLH 183 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~ 183 (360)
..+.+.+.++++++|.+-.++..+-.+|...|....-
T Consensus 79 ~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A 115 (146)
T PF03704_consen 79 EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEA 115 (146)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 3567788999999999999999999999988876643
No 189
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=37.09 E-value=1.6e+02 Score=31.38 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|..-|-.++..+|-..--+.|-+.|--- -+-|..|-.--.+|+.+-..| ..||-+-|-
T Consensus 113 y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-------~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~----------- 173 (536)
T KOG4648|consen 113 YEEAIDCYSTAIAVYPHNPVYHINRALAYLK-------QKSFAQAEEDCEAAIALDKLY-VKAYSRRMQ----------- 173 (536)
T ss_pred hhHHHHHhhhhhccCCCCccchhhHHHHHHH-------HHHHHHHHHhHHHHHHhhHHH-HHHHHHHHH-----------
Confidence 4556666666666677555555555444322 112223333333444432222 233333333
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
.++...-++.|+.-|+.||+|.|++-+-+.-
T Consensus 174 -AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~ 204 (536)
T KOG4648|consen 174 -ARESLGNNMEAKKDCETVLALEPKNIELKKS 204 (536)
T ss_pred -HHHHHhhHHHHHHhHHHHHhhCcccHHHHHH
Confidence 3677778999999999999999998766543
No 190
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=36.78 E-value=5.5e+02 Score=31.69 Aligned_cols=142 Identities=20% Similarity=0.181 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhh-cchhHHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQF-MNKDKIASLLVD 226 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~-~~k~~~~~aL~~ 226 (360)
.++.=|+..+.-.|.|..-+-++=--+|..+++.. +|++. .|+|+-..-|. ..|++|==|+..
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiek--AR~ia--------------erAL~tIN~REeeEKLNiWiA~lN 1505 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEK--ARKIA--------------ERALKTINFREEEEKLNIWIAYLN 1505 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHH--HHHHH--------------HHHhhhCCcchhHHHHHHHHHHHh
Confidence 46788899999999999877776544444444432 11111 12222221111 346666555542
Q ss_pred ----h--hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhH
Q 036322 227 ----A--CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPD 296 (360)
Q Consensus 227 ----~--~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~ 296 (360)
+ .+.|.+.+++||+ |.-+.. -| +.|+. .+.-.+|++||.+-++||. +.+.
T Consensus 1506 lEn~yG~eesl~kVFeRAcq-ycd~~~----V~-------~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~ 1565 (1710)
T KOG1070|consen 1506 LENAYGTEESLKKVFERACQ-YCDAYT----VH-------LKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRK 1565 (1710)
T ss_pred HHHhhCcHHHHHHHHHHHHH-hcchHH----HH-------HHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhh
Confidence 2 4788899999985 433321 12 33444 6677889999999999996 2356
Q ss_pred HHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 297 ALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 297 AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
..--||..| |+..-.++++++|+.|..+.
T Consensus 1566 vW~~y~~fL-----l~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1566 VWIMYADFL-----LRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHH-----hcccHHHHHHHHHHHHHhhc
Confidence 677788776 33333456667776665443
No 191
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.56 E-value=68 Score=31.63 Aligned_cols=84 Identities=20% Similarity=0.349 Sum_probs=65.3
Q ss_pred HHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhc
Q 036322 256 LYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALH 335 (360)
Q Consensus 256 LYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALr 335 (360)
+||=++.+-..++=.+|+..|.+=++||- ..++.|.|+|=.|-.+-..- =...|...|..+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-----~s~~~~nA~yWLGe~~y~qg------------~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-----NSTYTPNAYYWLGESLYAQG------------DYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCcccchhHHHHHHHHHhcc------------cchHHHHHHHHHHH
Confidence 88888888888887788888888888885 56688999999998754332 24567889999999
Q ss_pred cCCCchHHHHH---HHhhhhhccc
Q 036322 336 MNSDNLQVREA---LSSCMSELNH 356 (360)
Q Consensus 336 Ldpd~~qa~~A---l~~c~~el~~ 356 (360)
--|++|-|=+| |--|..+|+.
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcC
Confidence 99999988887 4567666654
No 192
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=36.27 E-value=1.7e+02 Score=31.82 Aligned_cols=102 Identities=25% Similarity=0.294 Sum_probs=65.1
Q ss_pred HHHHHHhhhCCCchhhHHhHHHhhhccc--chhcHHHHHHHHHHHHHHHHhccCC---------------ChhHHHhhHH
Q 036322 240 RKYRLALSIDGNDVRALYNWGLALFFLE--TAFDADKIFSAAIDNFDAMMLKGNI---------------YAPDALFGWA 302 (360)
Q Consensus 240 rKY~~Al~~dp~d~~ALYNWGlAL~~~~--~a~eAe~L~~aA~dKY~AAl~~~n~---------------~ap~AL~NWG 302 (360)
+.=++||+++|+-.+|| +-|++.. ...||++||.+|.+==+..+.+... ..|-.|..-+
T Consensus 189 kaA~eALei~pdCAdAY----ILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrR 264 (539)
T PF04184_consen 189 KAAKEALEINPDCADAY----ILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRR 264 (539)
T ss_pred HHHHHHHHhhhhhhHHH----hhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHH
Confidence 34467999999999998 4666633 3588999999988655444443111 0112333333
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCC--chHHHHHHHhhhhhcc
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD--NLQVREALSSCMSELN 355 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd--~~qa~~Al~~c~~el~ 355 (360)
+|.--+ |.-..+.|+..|++-++.+|. +-.+++=|..|.=|++
T Consensus 265 LAmCar----------klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq 309 (539)
T PF04184_consen 265 LAMCAR----------KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQ 309 (539)
T ss_pred HHHHHH----------HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcC
Confidence 332222 112346689999999998876 3448888999987775
No 193
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=35.21 E-value=6e+02 Score=30.34 Aligned_cols=120 Identities=25% Similarity=0.153 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHH-HHHHH-HHHHHHHHHhccCCCcchHHHHHHhhhhhhh----------
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVR-EELKL-HFSCKLRRLLLEGDVISVEEQKRILKGLDYQ---------- 213 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~-GeLKl-~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~---------- 213 (360)
+.+|..-|-.|..++|+.+.|.--|||-|-.. --+-+ ++.--++.++..-+.-+++++..+-+..+.+
T Consensus 53 le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hll~ 132 (1238)
T KOG1127|consen 53 LEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQSKNKGEALCKKFDDQYYQFKKHLLV 132 (1238)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHh
Confidence 66788888888888888888888888766530 00111 1111111111111111245566665555544
Q ss_pred hcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHh------hhCCCchhhHHhHHHhhhc
Q 036322 214 FMNKDKIASLLVDACEECEELLVKAGRKYRLAL------SIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 214 ~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al------~~dp~d~~ALYNWGlAL~~ 265 (360)
.+.-.++....++..|+-++.+..-||-|+=-+ ..+...-.+|||--+.+..
T Consensus 133 a~eigei~~trq~~se~N~~k~~a~~rl~Qi~l~~~~wei~k~S~q~~lynq~~n~~l 190 (1238)
T KOG1127|consen 133 AKEIGEIAVTRQDASEKNPKKFWAFCRLGQIQLHQKKWEIAKQSLQHALYNQPTNSDL 190 (1238)
T ss_pred hHHHHHHHhchHhhhhhCHHHHHhhCchHHHHhhhhhHHHHhcCHHHHHhcchhhhcc
Confidence 122233344444444444444444444443333 2466778899999888776
No 194
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=33.99 E-value=3.2e+02 Score=23.80 Aligned_cols=95 Identities=11% Similarity=0.082 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc--CCCcch-HHHHHH---hhhhhhhhcchh
Q 036322 145 ILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE--GDVISV-EEQKRI---LKGLDYQFMNKD 218 (360)
Q Consensus 145 lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~--~~p~s~-~~~~r~---~~~ld~~~~~k~ 218 (360)
+.+.+.+-|.+|++-- .++. +...+........++..+|+..+.+ ..|... .--+-+ ...+-.-+.+.
T Consensus 11 ~~~D~~~gY~~aae~v-~~~~----lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~lks~~~~~- 84 (139)
T TIGR02284 11 ISIDGKDGFEESAEEV-KDPE----LATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGKIRATLTPN- 84 (139)
T ss_pred HcccHHHHHHHHHHHC-CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHcCC-
Confidence 4567788899988873 2221 2222334444455566667666632 223221 111111 11121222211
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhC
Q 036322 219 KIASLLVDACEECEELLVKAGRKYRLALSID 249 (360)
Q Consensus 219 ~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~d 249 (360)
-..+++..|+++|. .+.++|..||+-+
T Consensus 85 -~d~aiL~~~e~gEd---~~~~~y~~aL~~~ 111 (139)
T TIGR02284 85 -DDYVVLEEAERGED---RAKKAYDETLADQ 111 (139)
T ss_pred -ChHHHHHHHHHhHH---HHHHHHHHHHhcC
Confidence 12345666777776 6778999999875
No 195
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=30.22 E-value=4e+02 Score=25.80 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
|-+.+..+-+++.+ ..+++=.-|... .+...+|=-.|.+-++||. + +|..|+. .|...+. -
T Consensus 150 A~k~l~~~~~~~eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~------~--t~~~lng--~A~~~l~---~ 214 (290)
T PF04733_consen 150 AEKELKNMQQIDED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG------S--TPKLLNG--LAVCHLQ---L 214 (290)
T ss_dssp HHHHHHHHHCCSCC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----------SHHHHHH--HHHHHHH---C
T ss_pred HHHHHHHHHhcCCc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC------C--CHHHHHH--HHHHHHH---h
Confidence 44555566566544 456664444333 2235667777777777663 2 3667764 4433333 2
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
+.-.|++ +..++|+..+|++|.++.-+.-|.-
T Consensus 215 ~~~~eAe-------~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 215 GHYEEAE-------ELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp T-HHHHH-------HHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred CCHHHHH-------HHHHHHHHhccCCHHHHHHHHHHHH
Confidence 2133444 4455578899999998888766643
No 196
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=29.83 E-value=2.6e+02 Score=32.16 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC---CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSIDG---NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp---~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
=.||+|+.+|...||+...-=| +-+.|.+-=||+|-.-.....-...|.+|...|+..- +.+.+|=-|..=++++
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAPLEYLGKALVY 562 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCchHHHhHHHHH
Confidence 4578999999999999887765 5678999999999881111111289999999998433 4667787777777777
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
|.+-. -.|..+ +|.-||+.=|+.|.
T Consensus 563 ~~~~~-----~~~~~~-------~~~~~~~~~~~~~~ 587 (932)
T PRK13184 563 QRLGE-----YNEEIK-------SLLLALKRYSQHPE 587 (932)
T ss_pred HHhhh-----HHHHHH-------HHHHHHHhcCCCCc
Confidence 76543 345544 55555555566664
No 197
>PRK04841 transcriptional regulator MalT; Provisional
Probab=28.30 E-value=7.7e+02 Score=26.44 Aligned_cols=164 Identities=15% Similarity=0.045 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCcCCh-----HHHhhhhhhHHHHHHHHHHHHHHHHHHhc---cCCCcchHHHHHHhhhhhhhhcchh
Q 036322 147 HKSARLLSQAIAMQHMSL-----LAVDQLGNTYLVREELKLHFSCKLRRLLL---EGDVISVEEQKRILKGLDYQFMNKD 218 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~-----~Avgn~GNalL~~GeLKl~~s~~Lr~lla---~~~p~s~~~~~r~~~~ld~~~~~k~ 218 (360)
..|...+.+|++..|... .++.++|.++...|++..-... ++.++. ..+++.. ...+. .
T Consensus 469 ~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~-~~~al~~~~~~g~~~~--~~~~~----------~ 535 (903)
T PRK04841 469 EEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAM-MQQTEQMARQHDVYHY--ALWSL----------L 535 (903)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHhhhcchHH--HHHHH----------H
Confidence 356677777777544432 4667888888888887643221 222221 1111100 00000 1
Q ss_pred HHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhC-CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh
Q 036322 219 KIASLLV--DACEECEELLVKAGRKYRLALSID-GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP 295 (360)
Q Consensus 219 ~~~~aL~--~~~eEaEeLL~eAgrKY~~Al~~d-p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap 295 (360)
.++.++. +..++|++++.+|-.-....-..+ +...-++.+-|.++...|...+|..++.+|.+-+.. .++...+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~---~~~~~~~ 612 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN---YQPQQQL 612 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc---cCchHHH
Confidence 1222222 223556665555443322210000 001112333344444478888888888888776541 1121122
Q ss_pred HHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 296 DALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 296 ~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
.++.+-|.+. +..+...++.+.+.++...+.
T Consensus 613 ~~~~~la~~~-----~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 613 QCLAMLAKIS-----LARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHh
Confidence 3333333322 223335677777777766544
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=28.24 E-value=58 Score=35.14 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=32.4
Q ss_pred hhcCCchHHH--HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH
Q 036322 133 MKSGWDEERA--EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL 180 (360)
Q Consensus 133 ~~~~~De~~A--d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL 180 (360)
|+|..|+..- ++-|.+|-++=-..++ ..|+||+||.|-.+|.-
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e-----~RAlYNlgnvYhakGk~ 151 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLE-----SRALYNLGNVYHAKGKC 151 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhh-----hHHHhhhhhhhhhcccc
Confidence 7888888765 7777777666555554 48999999999988754
No 199
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=27.90 E-value=1.4e+02 Score=34.30 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=48.2
Q ss_pred chhcHHHHHHHHHHHHHHHHhc--cCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q 036322 268 TAFDADKIFSAAIDNFDAMMLK--GNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQD 332 (360)
Q Consensus 268 ~a~eAe~L~~aA~dKY~AAl~~--~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ 332 (360)
++.=|++||.+|+-.|+..... +..-..+|.++-|++|=+-|+-..+ .+.+.||.+-|+.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 544 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGD-----PRDFTQALSEFSY 544 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCC-----hHHHHHHHHHHHH
Confidence 5666899999999999998884 2233359999999999999875554 2789999999875
No 200
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=27.78 E-value=3.4e+02 Score=26.43 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
..++..+.+.-+..|++||.-+|++...+-..-.|..++
T Consensus 40 ~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 40 KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV 78 (321)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 578888999999999999999999999998877776665
No 201
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=27.08 E-value=2e+02 Score=22.28 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc
Q 036322 116 DRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM 159 (360)
Q Consensus 116 ~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~ 159 (360)
+.++..|...|+.|+.++..+ +...|=-+.+.|+.++-+|+-+
T Consensus 2 ~~~~~~A~~~l~~A~~~~~~~-~~~~a~~~a~~a~e~~lkAll~ 44 (118)
T PF05168_consen 2 QDWLEKAEEDLKAAEILLEEG-DYNWAVFHAYQAVEKALKALLL 44 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999998876 5556777789999999888866
No 202
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=26.96 E-value=8.8e+02 Score=26.69 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCcCChHHHhhhh
Q 036322 150 ARLLSQAIAMQHMSLLAVDQLG 171 (360)
Q Consensus 150 a~~~s~Al~~~P~s~~Avgn~G 171 (360)
+++=-+||+++|+-..|+--|+
T Consensus 188 IkaA~eALei~pdCAdAYILLA 209 (539)
T PF04184_consen 188 IKAAKEALEINPDCADAYILLA 209 (539)
T ss_pred HHHHHHHHHhhhhhhHHHhhcc
Confidence 4555689999999999988776
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=26.66 E-value=2.5e+02 Score=27.78 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=55.7
Q ss_pred chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc--cCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 036322 252 DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK--GNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRL 329 (360)
Q Consensus 252 d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~--~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~k 329 (360)
-..-|||=|+..-..|. |..|+++|+++... ...++++|...-+-|. .+.. =..+|+..
T Consensus 33 p~~~LY~~g~~~L~~gn-------~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~-----Yk~~-------~y~~A~~~ 93 (254)
T COG4105 33 PASELYNEGLTELQKGN-------YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAY-----YKNG-------EYDLALAY 93 (254)
T ss_pred CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH-----Hhcc-------cHHHHHHH
Confidence 34567888887777666 78889999887763 3335689988877773 3333 35678888
Q ss_pred HHHhhccCCCchHHHHH
Q 036322 330 YQDALHMNSDNLQVREA 346 (360)
Q Consensus 330 ye~ALrLdpd~~qa~~A 346 (360)
.++=+++.|++|.+--+
T Consensus 94 ~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 94 IDRFIRLYPTHPNADYA 110 (254)
T ss_pred HHHHHHhCCCCCChhHH
Confidence 88999999999988666
No 204
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=26.41 E-value=2e+02 Score=32.46 Aligned_cols=50 Identities=28% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHH
Q 036322 113 VMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVR 177 (360)
Q Consensus 113 ~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~ 177 (360)
++|-.+|+-|+=+|+-+ |.-.|-.++-|++.++-+-|.-.+-+||+||+.
T Consensus 640 ~~~v~~v~la~~~~~~~---------------~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 640 QQDVPLVNLANLLIHYG---------------LHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred hhcccHHHHHHHHHHhh---------------hhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 44666777777777622 334577888999999988899999999999974
No 205
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.04 E-value=1.7e+02 Score=25.69 Aligned_cols=53 Identities=17% Similarity=0.039 Sum_probs=43.0
Q ss_pred HHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhh
Q 036322 117 RYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNT 173 (360)
Q Consensus 117 ~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNa 173 (360)
-+.-.|.=..++|+.. +|+..=.+-|--|.+||++++.+-|.+.-.++++|+=
T Consensus 35 lh~~QG~if~~lA~~t----en~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 35 LHRLQGTIFYKLAKKT----ENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HHHHHhHHHHHHHHhc----cCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 4455666667777776 7888778999999999999999999998888888843
No 206
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.13 E-value=5.2e+02 Score=27.25 Aligned_cols=92 Identities=22% Similarity=0.191 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF-LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
++.|-..|..|.+.|..+...- .+.|+|+=|..... .+...- -...|..-|..+...++ |+|.++-|....
T Consensus 265 ~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~---d~~~A~~~~~~aA~~g~---~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 265 LESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKI---DYEKALKLYTKAAELGN---PDAQYLLGVLYE 336 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccc---cHHHHHHHHHHHHhcCC---chHHHHHHHHHH
Confidence 3555577777777676666554 77789988888777 222111 45667777777777666 789999998866
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHM 336 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrL 336 (360)
.-. +++-.++|+.+|..|...
T Consensus 337 ~g~---------~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 337 TGT---------KERDYRRAFEYYSLAAKA 357 (552)
T ss_pred cCC---------ccccHHHHHHHHHHHHHc
Confidence 544 334566777777776643
No 207
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=24.99 E-value=1.9e+02 Score=23.10 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhcCCchHHH--HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 113 VMFDRYLTEANDLPKHAKECMKSGWDEERA--EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 113 ~~f~~~v~ea~~Llk~are~~~~~~De~~A--d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
+...+...+-.+|.++.+.++..|-+++.. +.|. .+.+...-..-|.++..+..||.+|....+.+.
T Consensus 28 ~~~~~~~~~~~~l~~~l~~~~~~g~~p~s~evq~l~---~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 96 (118)
T PF07739_consen 28 EEWQELQKEWDELFAELAALMEEGVDPDSPEVQELA---ERWMELINQFTGGDPELLRGLAQMYVEDPRFAA 96 (118)
T ss_dssp -----TTHHHHHHHHHHHHHHHHT--TT-HHHHHHH---HHHHHHHHHSS---HHHHHHHHHHTTSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHcCHHHHh
Confidence 556677777888888888888887555543 3332 333333335677899999999999887655553
No 208
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=24.88 E-value=71 Score=28.82 Aligned_cols=77 Identities=21% Similarity=0.121 Sum_probs=52.9
Q ss_pred cccccccCCCCCcccchHHHHHH----HHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhh
Q 036322 96 ARESEISSSSSSKFIDDVMFDRY----LTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLG 171 (360)
Q Consensus 96 ~~~~e~~~~~s~~~~d~~~f~~~----v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~G 171 (360)
.-++||.=+.+|-+ +.|.+. -.....++...-+.+..+ +...+..+|.++++.+.....+++.+.+.+.++|
T Consensus 39 ~L~~EI~Y~~tpL~---ea~~~i~~~~~~~~~~~f~~~a~~L~~~-~g~s~~~~w~~~~~~~~~~~~L~~~d~eiL~~lG 114 (170)
T TIGR02833 39 SLEAEIVYGHTPLP---EAFKKIALKSPKPVNLLFESASERLKEG-EGLTVYEAWKKALNEVWKQTALQKSEKEILLQFG 114 (170)
T ss_pred HHHHHHhhcCCcHH---HHHHHHHhhcchhHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 34566654444433 334443 223455666665565555 4566788999999999999999999999999999
Q ss_pred hhHHH
Q 036322 172 NTYLV 176 (360)
Q Consensus 172 NalL~ 176 (360)
.+|-.
T Consensus 115 ~~LG~ 119 (170)
T TIGR02833 115 KTLGE 119 (170)
T ss_pred HHHCc
Confidence 77654
No 209
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=24.23 E-value=1.1e+03 Score=26.82 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=47.0
Q ss_pred HHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 283 FDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 283 Y~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
++.+++....+.|+...+.+.-.. .++-..+..-+++|+..|+.-|..+||+.+--+-+-.|.
T Consensus 201 ~q~ale~L~~~e~~i~Dkla~~e~------ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQIVDKLAFEET------KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhhh------HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 444556555567888888877632 233457788899999999999999999988777666665
No 210
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.80 E-value=6.5e+02 Score=24.08 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.2
Q ss_pred ccchhcHHHHHHHHHHHHHHHHhc
Q 036322 266 LETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 266 ~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
-+..+|+.+.|..+.++|++++.+
T Consensus 104 l~~vKe~kK~FdK~s~~~d~al~K 127 (215)
T cd07601 104 LAEIMTLKELFKAASNDHDGVLSK 127 (215)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345788999999999999998884
No 211
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=23.18 E-value=6.8e+02 Score=24.06 Aligned_cols=144 Identities=16% Similarity=0.039 Sum_probs=79.3
Q ss_pred cccchHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHH
Q 036322 108 KFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCK 187 (360)
Q Consensus 108 ~~~d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~ 187 (360)
+..-|+-|+.--+.-.+|=.+-++..+..+..-...+=|..+.-.|++++.+ =++.+- ..|+.++...|++-.++..-
T Consensus 19 ~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~-L~~~E~-t~L~~~ls~lae~~ek~~~l 96 (219)
T cd07621 19 QKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQ-LATSEP-TPLDKFLLKVAETFEKLRKL 96 (219)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccc-chHHHHHHHHHHHHHHHHHH
Confidence 3334677888888877777777777776666666666667777777777766 111111 45565665555554443321
Q ss_pred HHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhh----hCCCchhhHHhHHHhh
Q 036322 188 LRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALS----IDGNDVRALYNWGLAL 263 (360)
Q Consensus 188 Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~----~dp~d~~ALYNWGlAL 263 (360)
.....++.+ =.|.+--+-|.+.+. +=-...++|.+|=.|=
T Consensus 97 ~~r~A~~d~------------------------------------l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~ 140 (219)
T cd07621 97 EGRVASDED------------------------------------LKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENAN 140 (219)
T ss_pred HHHHHHhhH------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 011111111211111 0112346777777665
Q ss_pred hc-------ccchhcHHHHHHHHHHHHHHHHhc
Q 036322 264 FF-------LETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 264 ~~-------~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
.. +..-.+|+.--.+|+++|+.+...
T Consensus 141 k~L~KaR~k~~~v~~AE~~~~~a~~~Fe~iS~~ 173 (219)
T cd07621 141 KNLEKARAKNKDVHAAEAAQQEACEKFESMSES 173 (219)
T ss_pred HHHHHhHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55 334456888889999999988774
No 212
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=22.88 E-value=1.2e+02 Score=19.36 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=18.4
Q ss_pred hHHHhhHH--HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhc
Q 036322 295 PDALFGWA--VALQQRSRLRPRNSKEKVKLLQQARRLYQDALH 335 (360)
Q Consensus 295 p~AL~NWG--lALqerA~lr~~sskEk~~Ll~qA~~kye~ALr 335 (360)
|+|.++.| ..+..--.-.+.+ .++|+..|++|-.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d-------~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKD-------YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHH-------HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCcccc-------ccchHHHHHHHHH
Confidence 67889999 4444433112222 4556666665543
No 213
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=22.88 E-value=6.4e+02 Score=23.67 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhccCCCchHHHHH
Q 036322 324 QQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 324 ~qA~~kye~ALrLdpd~~qa~~A 346 (360)
-.|...|++....+|.....++.
T Consensus 213 v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 213 VAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHhhCCCCCCcHHH
Confidence 46788889999999877655544
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=22.34 E-value=4.8e+02 Score=23.59 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhccC--CChhHHHhhHHHHHHHhhh-----cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 276 FSAAIDNFDAMMLKGN--IYAPDALFGWAVALQQRSR-----LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 276 ~~aA~dKY~AAl~~~n--~~ap~AL~NWGlALqerA~-----lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
|.+|+.-|+.-+.+-| .+.|-|||-=|++-.+.-. +- +..+. .+-.++|..-|+..|+.=||++-|.+|-
T Consensus 63 y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~-~~drD-~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 63 YEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFF-RSDRD-PTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred HHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhc-ccccC-cHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 4556666666666522 2456889999987665432 00 11111 2245699999999999999999988873
No 215
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.02 E-value=7.2e+02 Score=26.24 Aligned_cols=122 Identities=20% Similarity=0.082 Sum_probs=66.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH-HHHHHH--HHHhccCCCcchHHHHHHhhhhhhh
Q 036322 137 WDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL-HFSCKL--RRLLLEGDVISVEEQKRILKGLDYQ 213 (360)
Q Consensus 137 ~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl-~~s~~L--r~lla~~~p~s~~~~~r~~~~ld~~ 213 (360)
-|.+.|=..|..+++-|..+..+- .+.|.+.+|++|+...-+.. ....++ =+..+..+.+..
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a------------- 327 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA------------- 327 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH-------------
Confidence 455555555666666555555564 66799999999987542222 122211 122223222211
Q ss_pred hcchhHHHHHHHHhhHH---HHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHH
Q 036322 214 FMNKDKIASLLVDACEE---CEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNF 283 (360)
Q Consensus 214 ~~~k~~~~~aL~~~~eE---aEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY 283 (360)
..++.+|-+ -++-...|.+-|..|.. .....|+|+=++-... +.....|-.+|+.|++|=
T Consensus 328 --------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 328 --------QYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred --------HHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 111222211 23445677888877754 4677888875554433 444556777777777764
No 216
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.86 E-value=7.2e+02 Score=23.54 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=32.2
Q ss_pred chhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHh
Q 036322 268 TAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDA 333 (360)
Q Consensus 268 ~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~A 333 (360)
..+|+.+=|..+.++|++++.+ +...| +-+|.--.|+...|..+.++|+.+
T Consensus 102 ~vKe~kK~FdK~s~~~d~al~K-~~~~~--------------k~k~~e~~Ea~~~l~~~R~~F~~~ 152 (200)
T cd07639 102 GFRDARKEFERGAESLEAALQH-NAETP--------------RRKAQEVEEAAAALLGARATFRDR 152 (200)
T ss_pred HHHHHhhhHhhcchhHHHHHHH-Hhhcc--------------ccchHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888774 21111 112222346666778888888654
No 217
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.64 E-value=7.1e+02 Score=23.35 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=34.7
Q ss_pred cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHh
Q 036322 267 ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDA 333 (360)
Q Consensus 267 ~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~A 333 (360)
+..+|+.+-|..+-+||++++.+ +.. ..+-+|..-+|...-|..+.++|..+
T Consensus 101 ~~~KE~rK~Fdk~se~yd~al~k-~~~--------------~k~kk~~~l~Ea~~~L~~~Rk~f~~a 152 (200)
T cd07637 101 RKFKETKKQFDKVREDLEIALVK-NAQ--------------APRHKPHEVEEATSTLTITRKCFRHL 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hhh--------------cCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999988885 211 11123333456667777777777765
No 218
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.52 E-value=1.1e+02 Score=18.20 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhccCCCchHHHHH
Q 036322 323 LQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 323 l~qA~~kye~ALrLdpd~~qa~~A 346 (360)
++.|...|+.+|...|+++..-..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 456788899999999988776543
Done!