Query 036322
Match_columns 360
No_of_seqs 40 out of 42
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 19:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu2_A Mitochondrial import re 99.7 7.7E-16 2.7E-20 133.8 13.7 118 232-351 15-135 (158)
2 2pl2_A Hypothetical conserved 99.4 2.5E-11 8.4E-16 101.7 19.4 175 146-354 21-198 (217)
3 4gco_A Protein STI-1; structur 99.4 5.7E-12 2E-16 99.0 11.9 122 155-351 4-125 (126)
4 3vtx_A MAMA; tetratricopeptide 99.3 5.3E-11 1.8E-15 94.2 16.0 157 146-343 21-177 (184)
5 4gyw_A UDP-N-acetylglucosamine 99.3 1.9E-11 6.4E-16 125.0 15.8 51 116-181 10-60 (723)
6 4i17_A Hypothetical protein; T 99.2 1.1E-09 3.7E-14 89.7 18.9 179 146-353 23-226 (228)
7 1zu2_A Mitochondrial import re 99.2 1.2E-10 4.2E-15 101.2 13.8 103 144-291 16-122 (158)
8 3urz_A Uncharacterized protein 99.2 5.3E-10 1.8E-14 93.0 16.8 178 124-350 6-199 (208)
9 4abn_A Tetratricopeptide repea 99.2 1.4E-09 4.7E-14 102.8 21.0 176 147-354 120-305 (474)
10 2h6f_A Protein farnesyltransfe 99.2 4.3E-10 1.5E-14 105.8 16.4 171 146-354 113-287 (382)
11 3gyz_A Chaperone protein IPGC; 99.2 1.1E-10 3.6E-15 96.6 9.1 121 151-346 23-143 (151)
12 3qky_A Outer membrane assembly 99.1 6.7E-09 2.3E-13 87.3 18.7 183 146-348 31-236 (261)
13 4ga2_A E3 SUMO-protein ligase 99.1 1.1E-09 3.8E-14 87.5 11.7 95 236-350 48-143 (150)
14 3u4t_A TPR repeat-containing p 99.0 5.6E-09 1.9E-13 85.9 14.5 184 125-355 6-190 (272)
15 1w3b_A UDP-N-acetylglucosamine 99.0 1.8E-08 6.2E-13 88.3 17.9 106 236-354 254-386 (388)
16 2vgx_A Chaperone SYCD; alterna 99.0 2.1E-09 7.1E-14 86.3 10.9 127 150-351 7-133 (148)
17 1w3b_A UDP-N-acetylglucosamine 99.0 3.9E-08 1.3E-12 86.2 19.4 36 147-182 84-119 (388)
18 4eqf_A PEX5-related protein; a 99.0 6.8E-08 2.3E-12 83.7 20.3 101 234-354 192-294 (365)
19 3u4t_A TPR repeat-containing p 99.0 9.9E-09 3.4E-13 84.5 14.0 173 146-352 90-266 (272)
20 4abn_A Tetratricopeptide repea 99.0 6.6E-08 2.2E-12 91.4 21.2 214 115-355 47-272 (474)
21 3ieg_A DNAJ homolog subfamily 99.0 1.2E-07 4.2E-12 79.3 19.9 101 235-355 250-354 (359)
22 2xcb_A PCRH, regulatory protei 99.0 1.9E-09 6.5E-14 84.1 8.2 129 150-353 4-132 (142)
23 3uq3_A Heat shock protein STI1 99.0 7.9E-08 2.7E-12 77.3 17.8 185 146-351 54-257 (258)
24 1fch_A Peroxisomal targeting s 98.9 2.1E-07 7.1E-12 79.7 20.5 182 147-354 115-298 (368)
25 3hym_B Cell division cycle pro 98.9 6.6E-08 2.3E-12 80.6 16.8 117 235-351 175-314 (330)
26 4gyw_A UDP-N-acetylglucosamine 98.9 8.1E-09 2.8E-13 105.7 12.6 156 159-355 4-159 (723)
27 4gco_A Protein STI-1; structur 98.9 2.2E-08 7.5E-13 78.5 11.8 117 111-305 9-125 (126)
28 2ond_A Cleavage stimulation fa 98.9 1.4E-07 5E-12 82.3 18.3 104 235-347 185-303 (308)
29 1qqe_A Vesicular transport pro 98.9 1E-07 3.4E-12 83.2 17.2 163 147-345 54-237 (292)
30 3uq3_A Heat shock protein STI1 98.9 1E-06 3.4E-11 70.9 21.3 203 121-355 4-221 (258)
31 2xpi_A Anaphase-promoting comp 98.9 1.9E-07 6.5E-12 85.8 19.2 117 235-352 457-595 (597)
32 2y4t_A DNAJ homolog subfamily 98.8 2E-07 6.8E-12 82.3 18.0 100 234-353 272-375 (450)
33 2h6f_A Protein farnesyltransfe 98.8 4.3E-08 1.5E-12 92.3 14.5 171 146-354 148-322 (382)
34 4g1t_A Interferon-induced prot 98.8 1.3E-07 4.6E-12 84.5 16.8 184 147-354 155-347 (472)
35 1fch_A Peroxisomal targeting s 98.8 2.8E-07 9.6E-12 78.8 17.9 169 147-355 149-344 (368)
36 4eqf_A PEX5-related protein; a 98.8 1.9E-07 6.5E-12 80.9 17.1 186 146-354 115-340 (365)
37 1p5q_A FKBP52, FK506-binding p 98.8 9.3E-09 3.2E-13 93.0 8.3 131 149-354 132-277 (336)
38 2vsy_A XCC0866; transferase, g 98.8 5.1E-08 1.7E-12 92.3 13.6 165 146-348 5-169 (568)
39 2q7f_A YRRB protein; TPR, prot 98.8 4.8E-07 1.6E-11 72.6 17.3 166 146-352 73-238 (243)
40 3hym_B Cell division cycle pro 98.8 4.9E-07 1.7E-11 75.4 17.8 80 235-327 209-297 (330)
41 2ho1_A Type 4 fimbrial biogene 98.8 7.8E-07 2.7E-11 72.6 18.5 35 148-182 55-89 (252)
42 2pzi_A Probable serine/threoni 98.8 1.1E-07 3.6E-12 94.6 15.9 163 147-351 408-578 (681)
43 2ond_A Cleavage stimulation fa 98.8 2.3E-07 7.9E-12 81.0 16.0 168 144-349 30-211 (308)
44 3upv_A Heat shock protein STI1 98.8 8.6E-08 2.9E-12 72.1 11.2 100 235-354 20-125 (126)
45 3cv0_A Peroxisome targeting si 98.8 1.4E-06 4.9E-11 72.5 19.4 101 234-354 153-253 (327)
46 2q7f_A YRRB protein; TPR, prot 98.8 2.8E-07 9.7E-12 74.0 14.6 169 146-355 39-207 (243)
47 2y4t_A DNAJ homolog subfamily 98.7 1.9E-06 6.6E-11 76.0 21.0 94 234-347 158-251 (450)
48 2pl2_A Hypothetical conserved 98.7 2.8E-07 9.7E-12 77.0 14.7 159 161-354 2-164 (217)
49 2vq2_A PILW, putative fimbrial 98.7 1.4E-06 4.8E-11 68.6 17.6 35 147-181 25-59 (225)
50 2r5s_A Uncharacterized protein 98.7 2.1E-07 7.2E-12 74.7 13.1 151 124-310 8-159 (176)
51 3fp2_A TPR repeat-containing p 98.7 5E-07 1.7E-11 81.4 16.9 113 229-354 212-357 (537)
52 4g1t_A Interferon-induced prot 98.7 5.2E-07 1.8E-11 80.7 16.9 115 229-351 310-440 (472)
53 2e2e_A Formate-dependent nitri 98.7 1.7E-07 5.9E-12 74.0 12.0 125 146-345 26-153 (177)
54 3mkr_A Coatomer subunit epsilo 98.7 1.3E-06 4.6E-11 77.4 18.6 94 234-346 181-274 (291)
55 3qou_A Protein YBBN; thioredox 98.7 3.6E-07 1.2E-11 80.2 13.9 151 124-310 119-270 (287)
56 3sz7_A HSC70 cochaperone (SGT) 98.7 1.4E-07 4.7E-12 74.5 10.1 100 235-354 27-128 (164)
57 3ieg_A DNAJ homolog subfamily 98.7 2.7E-06 9.1E-11 71.2 18.4 181 124-353 5-200 (359)
58 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 3.1E-08 1.1E-12 93.6 7.0 132 148-354 252-398 (457)
59 3cv0_A Peroxisome targeting si 98.6 4E-06 1.4E-10 69.8 18.8 187 147-355 72-300 (327)
60 3gyz_A Chaperone protein IPGC; 98.6 2.9E-08 9.9E-13 82.0 5.7 99 237-355 20-118 (151)
61 3as5_A MAMA; tetratricopeptide 98.6 7.5E-07 2.6E-11 67.6 12.8 158 146-344 24-181 (186)
62 3edt_B KLC 2, kinesin light ch 98.6 1.9E-06 6.3E-11 69.7 14.6 178 136-332 14-201 (283)
63 3vtx_A MAMA; tetratricopeptide 98.6 5E-06 1.7E-10 65.6 16.7 154 161-355 2-155 (184)
64 2hr2_A Hypothetical protein; a 98.6 1E-07 3.5E-12 82.8 7.5 102 235-349 27-144 (159)
65 4i17_A Hypothetical protein; T 98.6 1.5E-06 5.2E-11 71.0 13.9 153 160-352 3-164 (228)
66 1xnf_A Lipoprotein NLPI; TPR, 98.6 1.3E-06 4.3E-11 71.5 13.4 163 146-350 21-187 (275)
67 3rkv_A Putative peptidylprolyl 98.6 3.4E-07 1.2E-11 72.1 9.6 100 235-354 27-145 (162)
68 2c2l_A CHIP, carboxy terminus 98.6 1.8E-06 6.1E-11 75.8 15.1 143 146-351 20-179 (281)
69 1a17_A Serine/threonine protei 98.6 4.5E-06 1.5E-10 63.3 15.3 118 118-306 9-126 (166)
70 3upv_A Heat shock protein STI1 98.6 3.3E-06 1.1E-10 63.3 14.3 120 122-306 4-123 (126)
71 3q49_B STIP1 homology and U bo 98.5 8.4E-07 2.9E-11 66.3 11.0 98 236-353 26-128 (137)
72 2ho1_A Type 4 fimbrial biogene 98.5 3.9E-06 1.3E-10 68.4 15.8 163 146-348 87-250 (252)
73 3fp2_A TPR repeat-containing p 98.5 5.8E-06 2E-10 74.5 18.3 182 148-354 294-475 (537)
74 2vsy_A XCC0866; transferase, g 98.5 9.5E-07 3.2E-11 83.6 13.7 128 146-302 39-169 (568)
75 4gcn_A Protein STI-1; structur 98.5 3E-07 1E-11 71.7 8.4 102 235-350 24-125 (127)
76 1elw_A TPR1-domain of HOP; HOP 98.5 1.9E-06 6.4E-11 61.1 11.8 97 235-351 20-116 (118)
77 1xnf_A Lipoprotein NLPI; TPR, 98.5 4.5E-06 1.5E-10 68.2 15.5 164 147-344 60-252 (275)
78 1hh8_A P67PHOX, NCF-2, neutrop 98.5 4.3E-06 1.5E-10 66.9 15.1 103 236-350 54-166 (213)
79 2pzi_A Probable serine/threoni 98.5 1E-06 3.5E-11 87.6 13.9 169 146-349 449-618 (681)
80 3sz7_A HSC70 cochaperone (SGT) 98.5 2.6E-06 9E-11 67.1 12.9 96 146-304 27-122 (164)
81 2gw1_A Mitochondrial precursor 98.5 3.6E-06 1.2E-10 74.9 15.2 181 148-351 288-493 (514)
82 1hxi_A PEX5, peroxisome target 98.5 1.1E-06 3.8E-11 68.1 10.5 88 235-342 33-120 (121)
83 2vq2_A PILW, putative fimbrial 98.5 8.6E-06 2.9E-10 64.1 15.3 165 146-348 58-223 (225)
84 2vgx_A Chaperone SYCD; alterna 98.5 3E-07 1E-11 73.6 7.0 99 237-355 5-103 (148)
85 2vyi_A SGTA protein; chaperone 98.5 3.2E-06 1.1E-10 60.7 11.8 101 235-355 28-128 (131)
86 2if4_A ATFKBP42; FKBP-like, al 98.5 4.2E-07 1.5E-11 82.4 8.6 168 112-344 169-336 (338)
87 3as5_A MAMA; tetratricopeptide 98.5 2.1E-06 7.3E-11 65.0 11.2 117 146-283 58-174 (186)
88 2fbn_A 70 kDa peptidylprolyl i 98.5 4.9E-06 1.7E-10 67.5 14.0 128 114-312 30-173 (198)
89 2lni_A Stress-induced-phosphop 98.4 2.1E-06 7.3E-11 62.6 10.6 100 235-354 32-131 (133)
90 1p5q_A FKBP52, FK506-binding p 98.4 8.4E-06 2.9E-10 73.7 16.4 119 146-331 163-296 (336)
91 2xcb_A PCRH, regulatory protei 98.4 5.7E-07 2E-11 70.0 7.6 98 238-355 3-100 (142)
92 2fbn_A 70 kDa peptidylprolyl i 98.4 2.7E-06 9.1E-11 69.0 11.8 101 234-354 53-169 (198)
93 2fo7_A Synthetic consensus TPR 98.4 1.2E-05 4.1E-10 57.4 13.9 119 147-340 18-136 (136)
94 3urz_A Uncharacterized protein 98.4 1.7E-06 5.7E-11 71.9 10.5 97 235-351 20-132 (208)
95 2hr2_A Hypothetical protein; a 98.4 2.2E-06 7.7E-11 74.4 11.4 108 119-289 8-131 (159)
96 2ifu_A Gamma-SNAP; membrane fu 98.4 8.6E-06 3E-10 71.5 15.3 194 118-345 6-232 (307)
97 2dba_A Smooth muscle cell asso 98.4 4.8E-06 1.6E-10 62.0 11.5 98 235-352 44-144 (148)
98 3qou_A Protein YBBN; thioredox 98.4 3.1E-06 1E-10 74.3 12.0 107 236-355 134-269 (287)
99 1a17_A Serine/threonine protei 98.4 2.2E-06 7.4E-11 65.1 9.6 98 235-352 29-126 (166)
100 2gw1_A Mitochondrial precursor 98.4 1.1E-05 3.7E-10 71.8 15.4 194 146-354 253-462 (514)
101 3nf1_A KLC 1, kinesin light ch 98.4 2.9E-05 9.9E-10 64.1 16.9 192 111-329 23-224 (311)
102 3rkv_A Putative peptidylprolyl 98.4 5.3E-06 1.8E-10 65.2 11.9 120 119-309 8-146 (162)
103 2xpi_A Anaphase-promoting comp 98.4 1.3E-05 4.5E-10 73.7 16.0 99 235-353 389-487 (597)
104 2xev_A YBGF; tetratricopeptide 98.3 6E-06 2.1E-10 61.0 10.9 100 235-351 18-120 (129)
105 4a1s_A PINS, partner of inscut 98.3 5.6E-06 1.9E-10 72.4 12.3 184 120-330 46-253 (411)
106 2lni_A Stress-induced-phosphop 98.3 1.3E-05 4.6E-10 58.3 12.4 119 111-307 12-130 (133)
107 1na0_A Designed protein CTPR3; 98.3 1.5E-05 5.3E-10 56.7 11.8 98 236-353 26-123 (125)
108 4ga2_A E3 SUMO-protein ligase 98.3 3.8E-06 1.3E-10 66.9 9.4 101 235-355 13-113 (150)
109 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.4E-05 4.9E-10 75.5 15.0 142 120-339 266-422 (457)
110 4f3v_A ESX-1 secretion system 98.3 6.5E-06 2.2E-10 77.0 12.0 179 148-349 24-249 (282)
111 1wao_1 Serine/threonine protei 98.3 3E-06 1E-10 81.1 10.0 140 121-341 5-155 (477)
112 3rjv_A Putative SEL1 repeat pr 98.3 1.8E-05 6.3E-10 66.2 13.7 165 148-352 4-173 (212)
113 1elw_A TPR1-domain of HOP; HOP 98.3 4.6E-05 1.6E-09 53.9 13.4 112 123-305 5-116 (118)
114 2r5s_A Uncharacterized protein 98.2 4.4E-06 1.5E-10 67.0 8.9 107 236-355 23-158 (176)
115 2yhc_A BAMD, UPF0169 lipoprote 98.2 3.6E-05 1.2E-09 64.2 14.8 169 146-341 20-218 (225)
116 2ooe_A Cleavage stimulation fa 98.2 2.1E-05 7.3E-10 73.6 14.6 114 147-279 255-382 (530)
117 3qky_A Outer membrane assembly 98.2 5E-05 1.7E-09 63.7 15.3 165 154-353 5-197 (261)
118 1hxi_A PEX5, peroxisome target 98.2 4.7E-06 1.6E-10 64.5 8.3 82 146-289 33-114 (121)
119 3k9i_A BH0479 protein; putativ 98.2 2.4E-06 8.2E-11 64.4 6.0 90 236-345 7-99 (117)
120 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-05 6.6E-10 56.9 10.5 107 235-355 20-126 (131)
121 4gcn_A Protein STI-1; structur 98.2 7.5E-06 2.6E-10 63.7 8.6 89 146-298 24-119 (127)
122 1ouv_A Conserved hypothetical 98.2 0.00014 4.9E-09 60.9 17.0 27 148-176 60-86 (273)
123 1ouv_A Conserved hypothetical 98.2 0.00016 5.6E-09 60.6 17.2 35 146-182 22-60 (273)
124 3edt_B KLC 2, kinesin light ch 98.2 9.5E-05 3.2E-09 59.7 15.0 127 147-285 60-201 (283)
125 2kat_A Uncharacterized protein 98.1 1.8E-05 6.1E-10 58.8 9.9 97 237-353 3-101 (115)
126 2vyi_A SGTA protein; chaperone 98.1 6.6E-05 2.2E-09 53.8 11.9 101 146-309 28-128 (131)
127 2c2l_A CHIP, carboxy terminus 98.1 1.1E-05 3.8E-10 70.7 9.3 86 236-341 21-106 (281)
128 1ihg_A Cyclophilin 40; ppiase 98.1 3.6E-05 1.2E-09 71.5 13.2 126 114-310 215-356 (370)
129 2kat_A Uncharacterized protein 98.1 1.6E-05 5.6E-10 59.0 8.7 82 148-284 3-84 (115)
130 2if4_A ATFKBP42; FKBP-like, al 98.1 6.3E-06 2.1E-10 74.8 7.7 98 235-352 195-309 (338)
131 3q49_B STIP1 homology and U bo 98.1 5.1E-05 1.7E-09 56.6 11.1 84 146-284 25-108 (137)
132 1ihg_A Cyclophilin 40; ppiase 98.1 1.7E-05 5.7E-10 73.7 10.1 100 235-354 239-354 (370)
133 3sf4_A G-protein-signaling mod 98.1 0.00028 9.7E-09 60.5 16.8 94 230-330 158-257 (406)
134 3k9i_A BH0479 protein; putativ 98.0 7.8E-06 2.7E-10 61.6 6.0 81 147-282 7-90 (117)
135 3nf1_A KLC 1, kinesin light ch 98.0 0.00011 3.9E-09 60.5 13.3 178 160-353 23-207 (311)
136 4a1s_A PINS, partner of inscut 98.0 7.3E-05 2.5E-09 65.3 12.2 164 147-331 103-294 (411)
137 1wao_1 Serine/threonine protei 98.0 3.7E-05 1.3E-09 73.6 10.8 97 235-351 22-118 (477)
138 3mkr_A Coatomer subunit epsilo 98.0 0.00027 9.1E-09 62.6 15.4 163 147-355 82-248 (291)
139 1na0_A Designed protein CTPR3; 97.9 0.00021 7E-09 50.8 11.8 63 237-307 61-123 (125)
140 3ro2_A PINS homolog, G-protein 97.9 0.00021 7.3E-09 58.5 12.9 164 148-330 61-253 (338)
141 2kck_A TPR repeat; tetratricop 97.9 9.4E-05 3.2E-09 52.0 9.3 86 236-341 23-111 (112)
142 3ro2_A PINS homolog, G-protein 97.9 7.3E-05 2.5E-09 61.3 9.8 164 146-332 21-215 (338)
143 2yhc_A BAMD, UPF0169 lipoprote 97.8 8.7E-05 3E-09 61.9 9.7 104 235-347 20-136 (225)
144 3rjv_A Putative SEL1 repeat pr 97.8 0.00042 1.4E-08 57.9 13.9 163 146-348 34-207 (212)
145 2fo7_A Synthetic consensus TPR 97.8 0.00043 1.5E-08 49.2 11.5 100 235-354 17-116 (136)
146 2ooe_A Cleavage stimulation fa 97.8 0.0014 4.7E-08 61.4 18.2 162 141-342 297-460 (530)
147 2xev_A YBGF; tetratricopeptide 97.8 0.00012 4.1E-09 54.0 8.8 83 146-283 18-106 (129)
148 1elr_A TPR2A-domain of HOP; HO 97.8 0.00029 9.8E-09 50.7 10.6 101 146-310 20-127 (131)
149 1dce_A Protein (RAB geranylger 97.8 0.00032 1.1E-08 69.5 13.9 177 148-352 47-237 (567)
150 2e2e_A Formate-dependent nitri 97.7 0.00011 3.7E-09 57.9 8.3 102 235-354 26-128 (177)
151 2kck_A TPR repeat; tetratricop 97.7 0.00042 1.5E-08 48.6 10.4 87 248-354 1-89 (112)
152 2kc7_A BFR218_protein; tetratr 97.7 6.2E-05 2.1E-09 54.1 6.2 79 235-341 16-95 (99)
153 3e4b_A ALGK; tetratricopeptide 97.7 0.0021 7.1E-08 60.4 18.1 156 149-351 164-328 (452)
154 1qqe_A Vesicular transport pro 97.7 0.00054 1.9E-08 59.6 13.2 170 146-351 93-284 (292)
155 3sf4_A G-protein-signaling mod 97.7 0.00072 2.5E-08 57.9 13.3 188 140-353 157-359 (406)
156 3q7a_A Farnesyltransferase alp 97.7 0.0039 1.3E-07 59.8 19.9 173 148-348 72-249 (349)
157 1na3_A Designed protein CTPR2; 97.7 0.00031 1.1E-08 48.7 8.9 83 251-353 7-89 (91)
158 2dba_A Smooth muscle cell asso 97.7 0.00024 8.2E-09 52.7 8.6 96 146-304 44-142 (148)
159 2l6j_A TPR repeat-containing p 97.6 0.00059 2E-08 48.8 9.8 84 252-355 3-92 (111)
160 3ulq_A Response regulator aspa 97.6 0.0012 4.3E-08 58.3 13.8 161 146-330 119-294 (383)
161 2l6j_A TPR repeat-containing p 97.6 0.00025 8.5E-09 50.7 7.5 65 146-265 20-90 (111)
162 2xm6_A Protein corresponding t 97.5 0.0035 1.2E-07 58.1 15.8 98 233-350 345-449 (490)
163 1pc2_A Mitochondria fission pr 97.5 0.00056 1.9E-08 59.4 9.9 102 233-352 12-116 (152)
164 3e4b_A ALGK; tetratricopeptide 97.5 0.0034 1.2E-07 58.9 15.7 98 234-351 194-293 (452)
165 1hh8_A P67PHOX, NCF-2, neutrop 97.5 0.00057 2E-08 54.6 8.8 114 147-291 23-152 (213)
166 3dra_A Protein farnesyltransfe 97.4 0.0077 2.6E-07 55.9 17.6 178 148-353 51-232 (306)
167 3q15_A PSP28, response regulat 97.4 0.0052 1.8E-07 54.6 15.8 160 146-336 117-290 (378)
168 2kc7_A BFR218_protein; tetratr 97.4 0.00035 1.2E-08 50.1 6.2 34 146-179 16-50 (99)
169 3dss_A Geranylgeranyl transfer 97.4 0.011 3.7E-07 56.1 17.9 186 139-350 83-281 (331)
170 3dss_A Geranylgeranyl transfer 97.3 0.0069 2.3E-07 57.4 16.1 170 148-345 48-231 (331)
171 3ro3_A PINS homolog, G-protein 97.3 0.001 3.5E-08 48.8 7.8 70 253-329 89-158 (164)
172 3ulq_A Response regulator aspa 97.3 0.0085 2.9E-07 53.0 14.8 148 119-284 119-295 (383)
173 1na3_A Designed protein CTPR2; 97.3 0.0016 5.6E-08 45.0 8.1 65 235-307 25-89 (91)
174 3ma5_A Tetratricopeptide repea 97.2 0.00049 1.7E-08 51.1 5.8 74 248-341 2-75 (100)
175 3gw4_A Uncharacterized protein 97.2 0.022 7.5E-07 44.5 14.9 153 159-332 20-179 (203)
176 3ma5_A Tetratricopeptide repea 97.2 0.0012 4.1E-08 49.0 7.1 47 236-282 24-70 (100)
177 1xi4_A Clathrin heavy chain; a 97.1 0.01 3.5E-07 67.3 17.2 210 119-344 1058-1317(1630)
178 2qfc_A PLCR protein; TPR, HTH, 97.0 0.13 4.5E-06 44.2 22.7 201 122-358 75-290 (293)
179 3u3w_A Transcriptional activat 97.0 0.1 3.6E-06 44.8 18.3 227 71-331 31-268 (293)
180 3n71_A Histone lysine methyltr 96.9 0.012 4.1E-07 58.0 13.3 162 111-326 298-461 (490)
181 2xm6_A Protein corresponding t 96.8 0.073 2.5E-06 49.3 17.4 98 235-351 312-409 (490)
182 2ifu_A Gamma-SNAP; membrane fu 96.8 0.014 4.9E-07 51.0 11.7 88 235-330 92-185 (307)
183 3q15_A PSP28, response regulat 96.8 0.088 3E-06 46.7 16.7 146 119-282 117-290 (378)
184 1klx_A Cysteine rich protein B 96.7 0.026 8.9E-07 44.7 12.0 86 238-345 44-133 (138)
185 3ly7_A Transcriptional activat 96.7 0.037 1.3E-06 54.1 15.0 129 146-342 215-345 (372)
186 1hz4_A MALT regulatory protein 96.6 0.071 2.4E-06 46.5 14.9 123 148-283 32-165 (373)
187 3qwp_A SET and MYND domain-con 96.6 0.012 4E-07 56.7 10.5 114 235-355 303-427 (429)
188 1hz4_A MALT regulatory protein 96.5 0.2 6.9E-06 43.6 17.1 109 236-353 232-349 (373)
189 3bee_A Putative YFRE protein; 96.4 0.014 4.8E-07 44.9 8.2 82 249-351 2-86 (93)
190 3n71_A Histone lysine methyltr 96.3 0.03 1E-06 55.2 11.8 120 229-355 326-449 (490)
191 3u64_A Protein TP_0956; tetrat 96.1 0.5 1.7E-05 45.4 18.4 194 133-348 35-246 (301)
192 3qww_A SET and MYND domain-con 95.9 0.043 1.5E-06 53.3 10.3 113 229-348 315-428 (433)
193 1dce_A Protein (RAB geranylger 95.7 0.062 2.1E-06 53.3 11.1 100 235-345 45-147 (567)
194 3mv2_B Coatomer subunit epsilo 95.7 0.1 3.4E-06 49.5 11.8 169 147-345 117-291 (310)
195 3ro3_A PINS homolog, G-protein 95.5 0.04 1.4E-06 40.2 6.8 90 236-332 26-121 (164)
196 3u3w_A Transcriptional activat 95.2 0.05 1.7E-06 46.9 7.5 90 235-337 131-226 (293)
197 3dra_A Protein farnesyltransfe 95.2 0.59 2E-05 43.3 15.1 142 145-309 84-234 (306)
198 2qfc_A PLCR protein; TPR, HTH, 95.2 0.051 1.7E-06 46.8 7.4 88 235-330 131-226 (293)
199 2v5f_A Prolyl 4-hydroxylase su 95.1 0.063 2.2E-06 40.8 6.9 76 260-348 12-87 (104)
200 3gw4_A Uncharacterized protein 94.5 0.19 6.4E-06 39.2 8.4 94 229-331 43-138 (203)
201 3qwp_A SET and MYND domain-con 94.5 0.073 2.5E-06 51.2 7.2 80 229-308 346-426 (429)
202 3bee_A Putative YFRE protein; 94.5 0.078 2.7E-06 40.7 6.0 48 147-195 26-73 (93)
203 3qww_A SET and MYND domain-con 94.4 0.21 7.1E-06 48.5 10.1 60 229-288 357-417 (433)
204 4b4t_Q 26S proteasome regulato 93.8 2.9 0.0001 36.7 15.4 184 146-353 20-224 (434)
205 1klx_A Cysteine rich protein B 93.6 1.3 4.4E-05 34.9 11.6 95 233-351 9-103 (138)
206 2v5f_A Prolyl 4-hydroxylase su 92.0 0.35 1.2E-05 36.6 6.1 24 238-261 65-88 (104)
207 1nzn_A CGI-135 protein, fissio 91.8 0.33 1.1E-05 41.0 6.3 94 233-345 15-112 (126)
208 3q7a_A Farnesyltransferase alp 91.4 5.5 0.00019 38.1 15.0 145 146-307 105-254 (349)
209 4f3v_A ESX-1 secretion system 91.2 0.29 9.9E-06 45.7 5.9 115 147-281 119-236 (282)
210 1xi4_A Clathrin heavy chain; a 90.0 8.4 0.00029 44.4 17.0 85 230-339 1080-1166(1630)
211 3mv2_B Coatomer subunit epsilo 89.6 1.8 6.1E-05 40.9 9.8 169 149-350 85-264 (310)
212 3ly7_A Transcriptional activat 89.0 15 0.0005 35.9 16.0 99 233-344 213-313 (372)
213 3u64_A Protein TP_0956; tetrat 85.5 2.6 8.9E-05 40.5 8.3 62 280-342 137-198 (301)
214 1pc2_A Mitochondria fission pr 75.0 14 0.00047 31.9 8.5 34 142-175 10-43 (152)
215 4b4t_Q 26S proteasome regulato 72.5 49 0.0017 28.9 15.1 120 147-286 112-249 (434)
216 4e6h_A MRNA 3'-END-processing 58.6 1.3E+02 0.0045 30.8 13.3 33 148-180 327-359 (679)
217 1y8m_A FIS1; mitochondria, unk 52.5 26 0.0009 30.4 5.9 91 236-346 23-116 (144)
218 3mkq_A Coatomer beta'-subunit; 51.6 20 0.00067 34.5 5.5 31 153-183 668-700 (814)
219 1b89_A Protein (clathrin heavy 48.8 26 0.0009 34.9 6.1 23 164-186 32-54 (449)
220 4e6h_A MRNA 3'-END-processing 48.4 2.4E+02 0.0083 28.9 13.6 166 145-336 47-223 (679)
221 3o48_A Mitochondria fission 1 47.8 38 0.0013 29.1 6.1 87 239-345 27-116 (134)
222 1y4c_A Maltose binding protein 44.2 33 0.0011 33.5 5.9 51 109-159 413-464 (494)
223 4hb1_A DHP1; designed helical 38.6 55 0.0019 26.9 5.4 48 112-159 3-50 (108)
224 2l7a_A Talin-1; vinculin, bund 37.4 84 0.0029 26.8 6.7 61 115-175 46-115 (131)
225 4abx_A DNA repair protein RECN 34.8 2.1E+02 0.0071 24.2 10.6 66 124-195 52-117 (175)
226 2xze_A STAM-binding protein; h 30.3 54 0.0019 27.8 4.4 52 111-163 29-80 (146)
227 2cpt_A SKD1 protein, vacuolar 26.7 92 0.0031 25.6 5.0 36 317-352 35-70 (117)
228 1b89_A Protein (clathrin heavy 24.2 1.8E+02 0.0063 28.9 7.5 43 234-276 222-266 (449)
229 3pvs_A Replication-associated 21.6 5.5E+02 0.019 24.7 10.3 88 160-265 267-359 (447)
230 1wfd_A Hypothetical protein 15 21.3 2.9E+02 0.01 21.4 7.3 70 102-179 2-73 (93)
231 3o10_A Sacsin; all-helical dom 20.4 2.5E+02 0.0085 23.1 6.5 60 111-171 5-69 (141)
No 1
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.66 E-value=7.7e-16 Score=133.84 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 232 EELLVKAGRKYRLALSIDGNDVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 232 EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
...+.+|.+.|++|++++|++.++++|||.+|.. ...+.+|-.++++|+.+|++++.+ ++..++||||.|+|+..+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-dP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-DPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999998 456778889999999999999997 445799999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
.++.|+ ..+....+.+|+.+|++||.+||+++..+.+|..|.
T Consensus 94 g~l~P~-~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 94 AFLTPD-ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHCCC-HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccCcc-hhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999998 567788999999999999999999999999998775
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.42 E-value=2.5e-11 Score=101.69 Aligned_cols=175 Identities=15% Similarity=0.069 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|+..|.+|++++|.++.++.++|.+|...|+...-+. .++.++.-. |..... .+.++.........
T Consensus 21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~------ 92 (217)
T 2pl2_A 21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE-NGKTLVART-PRYLGGYMVLSEAYVALYRQAED------ 92 (217)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSS------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhh------
Confidence 4578899999999999999999999999999988775433 344444433 332211 12222111000000
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
......-+.+|..-|+.|++++|++..+++|.|.++...|.. .+|++-|+.++.+. ..|+++++.|
T Consensus 93 -----~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 93 -----RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGER-------DKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred -----hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhcc--cchHHHHHHH
Confidence 001114467888899999999999999999999999987774 45555566666654 5699999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
.++...- -+.+|+..|++||.++|+++.+...|..|-..+
T Consensus 159 ~~~~~~g------------~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 159 ELYLSMG------------RLDEALAQYAKALEQAPKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHT------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred HHHHHcC------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 9976654 367889999999999999999998887775543
No 3
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.37 E-value=5.7e-12 Score=99.00 Aligned_cols=122 Identities=22% Similarity=0.279 Sum_probs=99.7
Q ss_pred HHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHH
Q 036322 155 QAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEEL 234 (360)
Q Consensus 155 ~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeL 234 (360)
.+..++|...+++.|.||+|...|.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~------------------------------------------------------- 28 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD------------------------------------------------------- 28 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC-------------------------------------------------------
Confidence 4566899999999999999985322
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..|++++|+++.+++|-|.++...|. |.+|++-|+.++.+.+ ..+.+|++.|.++..+-
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~----- 95 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-------FQRALDDCDTCIRLDS-KFIKGYIRKAACLVAMR----- 95 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-------HHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCC-----
Confidence 2456668999999999999999999999988776 5666777777777644 45899999999987664
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-+.+|+..|++||.++|++++++..|..|.
T Consensus 96 -------~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 96 -------EWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 367899999999999999999999999995
No 4
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=5.3e-11 Score=94.15 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+|++++|.++.++.++|.+|...|.....+.. +..++... |...... .. ++.
T Consensus 21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~-~~~~~~~~-~~~~~~~--~~------------~~~--- 81 (184)
T 3vtx_A 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIES-LKKFVVLD-TTSAEAY--YI------------LGS--- 81 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHC-CCCHHHH--HH------------HHH---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHhcC-chhHHHH--HH------------HHH---
Confidence 46789999999999999999999999999998887654332 22233222 2211100 00 000
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
+.....-+..|...|..|+.++|++..++++.|.++...|. |.+|++-|++++.+.+ ..++++++.|.++
T Consensus 82 --~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 82 --ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-------HDKAIEAYEKTISIKP-GFIRAYQSIGLAY 151 (184)
T ss_dssp --HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred --HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-------chhHHHHHHHHHHhcc-hhhhHHHHHHHHH
Confidence 11111224567778889999999999999999999988666 5667777777777644 4699999999998
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQV 343 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa 343 (360)
...-. +.+|+..|++||.++|+++..
T Consensus 152 ~~~g~------------~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 152 EGKGL------------RDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp HHTTC------------HHHHHHHHHHHHHTTHHHHHH
T ss_pred HHCCC------------HHHHHHHHHHHHhCCccCHHH
Confidence 76542 567999999999999998653
No 5
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1.9e-11 Score=125.03 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 116 DRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 116 ~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
+.+.+-|+-+.++++ +.+|+++|.+||+++|.+..|++|+|++|...|+..
T Consensus 10 ~al~nLG~~~~~~G~---------------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~ 60 (723)
T 4gyw_A 10 DSLNNLANIKREQGN---------------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60 (723)
T ss_dssp HHHHHHHHHHHHTTC---------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 455555665555432 457889999999999999999999999998766554
No 6
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=1.1e-09 Score=89.75 Aligned_cols=179 Identities=7% Similarity=-0.004 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHcCc-CChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQH-MSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P-~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
+.+|...|.+|++++| .+..+.+++|.+|...|....-+.. +..++... |... .+.. .++.++
T Consensus 23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~-p~~~----~~~~----------~l~~~~ 86 (228)
T 4i17_A 23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADY-FDIAIKKN-YNLA----NAYI----------GKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHTT-CSHH----HHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhC-cchH----HHHH----------HHHHHH
Confidence 4678999999999999 9999999999999998887654332 33444332 3211 1111 122222
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCch-------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCC--hh
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDV-------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIY--AP 295 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~-------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~--ap 295 (360)
... .-+.+|...|..+++++|++. .++++-|..+...+. |.+|++-|+.++.+.+ . .+
T Consensus 87 ~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~ 153 (228)
T 4i17_A 87 RDM-----KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-------IEKAEENYKHATDVTS-KKWKT 153 (228)
T ss_dssp HHT-----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTTSSC-HHHHH
T ss_pred HHc-----ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-------HHHHHHHHHHHHhcCC-CcccH
Confidence 221 234677889999999999999 668888888766655 5667777777777633 5 58
Q ss_pred HHHhhHHHHHHHhhhc--------CC-------CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 296 DALFGWAVALQQRSRL--------RP-------RNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 296 ~AL~NWGlALqerA~l--------r~-------~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
.++++.|..+...+.. .+ .........+++|+..|++|+.++|+++.++..|.+....
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 154 DALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 9999999998777653 00 0013344566899999999999999999999998876543
No 7
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.23 E-value=1.2e-10 Score=101.20 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHH
Q 036322 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 144 ~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
..+.+|+++|.+|++++|.+++++.|||++|+..|+.+.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~----------------------------------------- 54 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS----------------------------------------- 54 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC-----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccch-----------------------------------------
Confidence 346789999999999999999999999999997665551
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc----cchhcHHHHHHHHHHHHHHHHhccC
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL----ETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~----~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
+.++.+++.+|...|.+||+++|+.++|+||.|+|+..- ....+|..-|.+|++-|++|+.+-+
T Consensus 55 ----g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 55 ----ISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----hhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 112235688999999999999999999999999999762 2335677889999999999999744
No 8
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.23 E-value=5.3e-10 Score=93.04 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=114.2
Q ss_pred hhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhh----------------hhhhHHHHHHHHHHHHHH
Q 036322 124 DLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQ----------------LGNTYLVREELKLHFSCK 187 (360)
Q Consensus 124 ~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn----------------~GNalL~~GeLKl~~s~~ 187 (360)
.++.+|...+..|+ +.+|+.+|.+|++++|.++.++++ +|++|...|+...-+..
T Consensus 6 ~~~~~g~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~- 76 (208)
T 3urz_A 6 EMLQKVSAAIEAGQ--------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF- 76 (208)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH-
T ss_pred HHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH-
Confidence 44555555544443 457889999999999999999999 99999988877654332
Q ss_pred HHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhccc
Q 036322 188 LRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLE 267 (360)
Q Consensus 188 Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~ 267 (360)
++.++.-. |..... . -.++.++... .-+.+|..-|..|++++|++..|++|-|.++...
T Consensus 77 ~~~al~~~-p~~~~~----~----------~~lg~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~- 135 (208)
T 3urz_A 77 YKELLQKA-PNNVDC----L----------EACAEMQVCR-----GQEKDALRMYEKILQLEADNLAANIFLGNYYYLT- 135 (208)
T ss_dssp HHHHHHHC-TTCHHH----H----------HHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHC-CCCHHH----H----------HHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-
Confidence 33334332 322111 0 0122222211 2246777889999999999999999999887542
Q ss_pred chhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 268 TAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 268 ~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
.+.-...+..-|..++. +.....++|+.|+++... .-..+|+..|++||+++|+.. +...|
T Consensus 136 ----~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~------------~~~~~A~~~~~~al~l~P~~~-~~~~l 196 (208)
T 3urz_A 136 ----AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFT------------TRYEKARNSLQKVILRFPSTE-AQKTL 196 (208)
T ss_dssp ----HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHH------------HTHHHHHHHHHHHTTTSCCHH-HHHHH
T ss_pred ----hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCHH-HHHHH
Confidence 23334566777766554 221234778888886543 246889999999999999854 55555
Q ss_pred Hhh
Q 036322 348 SSC 350 (360)
Q Consensus 348 ~~c 350 (360)
..+
T Consensus 197 ~~i 199 (208)
T 3urz_A 197 DKI 199 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 9
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=1.4e-09 Score=102.79 Aligned_cols=176 Identities=18% Similarity=0.185 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.++|.+|++++|.+..+++++|++|...|....-+. .++.++.-. |. . .+.. .++.++..
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~~~-p~-~----~~~~----------~lg~~~~~ 182 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT-CFSGALTHC-KN-K----VSLQ----------NLSMVLRQ 182 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHTTC-CC-H----HHHH----------HHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhC-CC-H----HHHH----------HHHHHHHH
Confidence 688999999999999999999999999999988775433 344444433 32 1 1111 11222221
Q ss_pred h----hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc----cchhcHHHHHHHHHHHHHHHHhccCC--ChhH
Q 036322 227 A----CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL----ETAFDADKIFSAAIDNFDAMMLKGNI--YAPD 296 (360)
Q Consensus 227 ~----~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~----~~a~eAe~L~~aA~dKY~AAl~~~n~--~ap~ 296 (360)
. ..+-..-+.+|.+.|+.|++++|++..+++|-|.++... +. ...-|.+|++-|++++.+.+. ..|.
T Consensus 183 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 183 LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ---NPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc---ccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 1 122224568899999999999999999999999999762 11 113477888888888886331 5699
Q ss_pred HHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 297 ALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 297 AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++++.|.++..+-. +.+|...|++|+.++|+++.+...+..|...+
T Consensus 260 ~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 260 LHLNRATLHKYEES------------YGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999877542 56799999999999999999998887776544
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.19 E-value=4.3e-10 Score=105.79 Aligned_cols=171 Identities=8% Similarity=0.071 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH-HHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE-LKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge-LKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~~ 221 (360)
+.+|+++|.+||+++|.+..++.++|++|...|+ ....+. .++.++.-. |... ..++.++..+
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~-~~~~al~l~-P~~~~a~~~~g~~~~~~----------- 179 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMN-YITAIIEEQ-PKNYQVWHHRRVLVEWL----------- 179 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHH-HHHHHHHHC-CCCHHHHHHHHHHHHHc-----------
Confidence 3468899999999999999999999999999886 664433 234444332 3221 1222332222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 222 SLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 222 ~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
.-+.+|..-|+.||+++|+++.|++|-|.++..-|. |.+|++-|++++.+ ++..+.|+++-
T Consensus 180 -----------g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~-------~~eAl~~~~~al~l-~P~~~~a~~~l 240 (382)
T 2h6f_A 180 -----------RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-------WDNELQYVDQLLKE-DVRNNSVWNQR 240 (382)
T ss_dssp -----------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------CTTHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred -----------cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 123567779999999999999999999999988665 35577777777776 44569999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
|.+|..+... ..+ .++..++..|++||.++|+++.+..-|..|...+
T Consensus 241 g~~l~~l~~~----~~e--A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 241 YFVISNTTGY----NDR--AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR 287 (382)
T ss_dssp HHHHHHTTCS----CSH--HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCc----chH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc
Confidence 9998874321 123 3678889999999999999999988887776654
No 11
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.15 E-value=1.1e-10 Score=96.63 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=99.9
Q ss_pred HHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHH
Q 036322 151 RLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEE 230 (360)
Q Consensus 151 ~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eE 230 (360)
..|.++++++|.++.+++++|.+|...|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~--------------------------------------------------- 51 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGR--------------------------------------------------- 51 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTC---------------------------------------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCC---------------------------------------------------
Confidence 45788899999999999999988875322
Q ss_pred HHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 231 CEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 231 aEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+.+|.+.|+.|++++|+++.+++|-|.++...+. |.+|++-|+.++.+.| ..|.+++|-|.++..+-+
T Consensus 52 ----~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-------~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 52 ----IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ-------FQQAADLYAVAFALGK-NDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp ----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-------HHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 2456668999999999999999999999988766 6778888888888644 569999999999887653
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
+..|+..|+.||.++|+.+....|
T Consensus 120 ------------~~eA~~~~~~al~l~~~~~~~~~A 143 (151)
T 3gyz_A 120 ------------PLKAKECFELVIQHSNDEKLKIKA 143 (151)
T ss_dssp ------------HHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhCCCHHHHHHH
Confidence 678999999999999999855444
No 12
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=6.7e-09 Score=87.33 Aligned_cols=183 Identities=18% Similarity=0.097 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCcCC---hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMS---LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s---~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|+..|.+++...|.+ ..|++++|.+|...|+...-+. .+..++... |.+. ....+.- .++.
T Consensus 31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~-~~~~~l~~~-p~~~-~~~~a~~----------~lg~ 97 (261)
T 3qky_A 31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAAS-EYERFIQIY-QIDP-RVPQAEY----------ERAM 97 (261)
T ss_dssp HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCT-THHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHC-CCCc-hhHHHHH----------HHHH
Confidence 457889999999999999 9999999999999888765433 234444332 2110 0001100 0111
Q ss_pred HHHHhh---HHHHHHHHHHHHHHHHHhhhCCCchhhH-----------------HhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 223 LLVDAC---EECEELLVKAGRKYRLALSIDGNDVRAL-----------------YNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 223 aL~~~~---eEaEeLL~eAgrKY~~Al~~dp~d~~AL-----------------YNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
++.... ..-..-+.+|...|..+++.+|++..+. |+-|..+...|.-.+|...|..+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 111000 0002346778889999999999987776 77788777777766666666665555
Q ss_pred HHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 283 FDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 283 Y~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
|- .+...|+++++.|.++..+...... ..+..-+.+|+..|+.++.+.|+++.+..|..
T Consensus 178 ~p-----~~~~~~~a~~~l~~~~~~~g~~~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 236 (261)
T 3qky_A 178 YP-----DTPWADDALVGAMRAYIAYAEQSVR--ARQPERYRRAVELYERLLQIFPDSPLLRTAEE 236 (261)
T ss_dssp CT-----TSTTHHHHHHHHHHHHHHHHHTSCG--GGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CC-----CCchHHHHHHHHHHHHHHhcccchh--hcccchHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 42 2234689999999999888643221 23456789999999999999999988877743
No 13
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=1.1e-09 Score=87.51 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.+|.+.|..|++++|++..|+++.|.++...+. +.+|+.-|+.++.+.+ ..|+++++.|..+...-...
T Consensus 48 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~--- 116 (150)
T 4ga2_A 48 DLAKKYICTYINVQERDPKAHRFLGLLYELEEN-------TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTD--- 116 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSS---
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-------hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChH---
Confidence 456668999999999999999999999988776 4566666777777644 56999999999987765422
Q ss_pred hHHHHHHHHHHHHH-HHHhhccCCCchHHHHHHHhh
Q 036322 316 SKEKVKLLQQARRL-YQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 316 skEk~~Ll~qA~~k-ye~ALrLdpd~~qa~~Al~~c 350 (360)
.|... ++.|+.++|+++.+..-....
T Consensus 117 ---------~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 117 ---------GRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp ---------SHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 23444 589999999999997765544
No 14
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.04 E-value=5.6e-09 Score=85.94 Aligned_cols=184 Identities=10% Similarity=0.070 Sum_probs=128.0
Q ss_pred hhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHH
Q 036322 125 LPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQK 204 (360)
Q Consensus 125 Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~ 204 (360)
+++.|.-....++ +.+|.+.|.++++++|.++.++.++|.+|...|....-+. .+..++...+.+.. ..
T Consensus 6 ~~~~a~~~~~~~~--------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~--~~ 74 (272)
T 3u4t_A 6 EFRYADFLFKNNN--------YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQK-DIETYFSKVNATKA--KS 74 (272)
T ss_dssp HHHHHHHHHTTTC--------HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHH-HHHHHHTTSCTTTC--CH
T ss_pred HHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhccCchhH--HH
Confidence 4455555544443 4578899999999999999999999999999888775433 23444442111110 00
Q ss_pred HHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 205 RILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 205 r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
.+. ..++..... ..-+.+|.+.|..+++++|++..++++-|.++...+. |.+|++-|+
T Consensus 75 ~~~----------~~lg~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~ 132 (272)
T 3u4t_A 75 ADF----------EYYGKILMK-----KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN-------FPLAIQYME 132 (272)
T ss_dssp HHH----------HHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-------HHHHHHHHG
T ss_pred HHH----------HHHHHHHHH-----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC-------HHHHHHHHH
Confidence 000 011111111 1235778889999999999999999999999988776 455666666
Q ss_pred HHHhccCCChhHHHhhHH-HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 285 AMMLKGNIYAPDALFGWA-VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 285 AAl~~~n~~ap~AL~NWG-lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
.++.+ ++..+.++++.| ..+... -+.+|+..|++++.++|+++.+...+..|...++
T Consensus 133 ~al~~-~~~~~~~~~~l~~~~~~~~-------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 133 KQIRP-TTTDPKVFYELGQAYYYNK-------------EYVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190 (272)
T ss_dssp GGCCS-SCCCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred HHhhc-CCCcHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 66665 445689999999 776544 5788999999999999999998888877766554
No 15
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.02 E-value=1.8e-08 Score=88.34 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH---------------------------HHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID---------------------------NFDAMML 288 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d---------------------------KY~AAl~ 288 (360)
.+|.+.|..+++++|+...++++.|.++...|...+|..+|.+|++ -|+.++.
T Consensus 254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666677777777777777777776665554444444443332 2222222
Q ss_pred ccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 289 KGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 289 ~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+.+ ..+.++++.|..+...- -+..|+..|++|+.++|+++.+...|..|..++
T Consensus 334 ~~p-~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 334 VFP-EFAAAHSNLASVLQQQG------------KLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp SCT-TCHHHHHHHHHHHHTTT------------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred cCC-CcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 211 22444555444443322 135677778888888888888887777766554
No 16
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.02 E-value=2.1e-09 Score=86.25 Aligned_cols=127 Identities=14% Similarity=0.082 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhH
Q 036322 150 ARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACE 229 (360)
Q Consensus 150 a~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~e 229 (360)
...|.+|++++|.+..+++++|.+|...|+
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~-------------------------------------------------- 36 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGX-------------------------------------------------- 36 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTC--------------------------------------------------
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCC--------------------------------------------------
Confidence 356889999999999999999988775322
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 230 ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
+.+|...|+.++.++|+++.++++=|.++...+. |.+|++-|+.++.+.+ ..|.++++-|.++..+-
T Consensus 37 -----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 37 -----YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-------YDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQXG 103 (148)
T ss_dssp -----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 1345567889999999999999999998887666 4566666777777644 46899999999987665
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
. +.+|+..|+.||.++|++|+.......|.
T Consensus 104 ~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 133 (148)
T 2vgx_A 104 E------------LAEAESGLFLAQELIANXPEFXELSTRVS 133 (148)
T ss_dssp C------------HHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred C------------HHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence 3 46788999999999999887655544443
No 17
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.01 E-value=3.9e-08 Score=86.20 Aligned_cols=36 Identities=6% Similarity=0.066 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
.+|.+.|.+|+.++|....++.++|.+|...|....
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHH
Confidence 456666777777777777777777777766665543
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.00 E-value=6.8e-08 Score=83.70 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhhhCCC--chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 234 LLVKAGRKYRLALSIDGN--DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~--d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
-+.+|.+.|..+++++|+ +..++++.|.++...+...+|..+|. .++.+.+ ..+.++++.|.++...-
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~al~~~p-~~~~~~~~l~~~~~~~g-- 261 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN-------AALTVRP-EDYSLWNRLGATLANGD-- 261 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH-------HHHHHCT-TCHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH-------HHHHhCC-CCHHHHHHHHHHHHHcC--
Confidence 467788889999999999 89999999999888776555555544 4444433 35899999999987643
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-+.+|+..|++|+.++|+++.+...|..|-..+
T Consensus 262 ----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 262 ----------RSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp ----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 356788899999999999999988887776544
No 19
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.99 E-value=9.9e-09 Score=84.45 Aligned_cols=173 Identities=12% Similarity=0.018 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHH-HHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIA-SLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~-~aL 224 (360)
+.+|.+.|.+|++++|.+..++.++|++|...|....-+. .++.++.- .|.....+ . .++ ...
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~-~~~~~~~~----~----------~l~~~~~ 153 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ-YMEKQIRP-TTTDPKVF----Y----------ELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHGGGCCS-SCCCHHHH----H----------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH-HHHHHhhc-CCCcHHHH----H----------HHHHHHH
Confidence 3588999999999999999999999999999887764333 23334433 23322111 1 111 111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc---hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLET---AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~---a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
.. .-+.+|.+-|..+++++|++..++++.|.++..-+. -.+|...|..|++.+...-...+....++|++.
T Consensus 154 ~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 154 YN------KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 10 146778889999999999999999999999887544 555777777777766421110000123688888
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
|..+.... -+++|+..|++|+.++|++++|+..|.....
T Consensus 228 ~~~~~~~~------------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 228 AYYYTINR------------DKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHcC------------CHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 88875532 3678999999999999999999999876544
No 20
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.98 E-value=6.6e-08 Score=91.39 Aligned_cols=214 Identities=12% Similarity=0.044 Sum_probs=149.0
Q ss_pred HHHHHHHHhhhhHHHHhhhhcCCchH------HHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH-HHHHHHH
Q 036322 115 FDRYLTEANDLPKHAKECMKSGWDEE------RAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL-KLHFSCK 187 (360)
Q Consensus 115 f~~~v~ea~~Llk~are~~~~~~De~------~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL-Kl~~s~~ 187 (360)
|+.+-.....|....+.......... ....-+.++.+.+.++....|.+..+++++|.+|...|+. ..-+ ..
T Consensus 47 ~~~l~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~-~~ 125 (474)
T 4abn_A 47 LQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAE-VL 125 (474)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHH-HH
Confidence 55555555555555554444333222 4466688888999999999999999999999999998887 5332 23
Q ss_pred HHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc-
Q 036322 188 LRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL- 266 (360)
Q Consensus 188 Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~- 266 (360)
++.++.-. |.... +.. .++.++.. ..-+.+|.+.|..|++++|+ +.+++|.|.++...
T Consensus 126 ~~~al~~~-p~~~~----a~~----------~lg~~~~~-----~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~ 184 (474)
T 4abn_A 126 LSKAVKLE-PELVE----AWN----------QLGEVYWK-----KGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQ 184 (474)
T ss_dssp HHHHHHHC-TTCHH----HHH----------HHHHHHHH-----HTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCC
T ss_pred HHHHHhhC-CCCHH----HHH----------HHHHHHHH-----cCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhc
Confidence 44444332 32211 111 11222221 12357788899999999999 79999999999883
Q ss_pred -cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCC---CchH
Q 036322 267 -ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNS---DNLQ 342 (360)
Q Consensus 267 -~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdp---d~~q 342 (360)
+...+...-|.+|++-|++++.+.+ ..+.++++.|.++..+.-.... ...-+.+|+..|++|+.++| +++.
T Consensus 185 ~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 185 TDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQ----NPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred cCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhcc----ccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 4444555678899999999998744 5689999999999877322222 22468899999999999999 9999
Q ss_pred HHHHHHhhhhhcc
Q 036322 343 VREALSSCMSELN 355 (360)
Q Consensus 343 a~~Al~~c~~el~ 355 (360)
+...|..|-..+.
T Consensus 260 ~~~~lg~~~~~~g 272 (474)
T 4abn_A 260 LHLNRATLHKYEE 272 (474)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9988887765543
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.96 E-value=1.2e-07 Score=79.33 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhhhCCCchh----hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 235 LVKAGRKYRLALSIDGNDVR----ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~----ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+.+|.+.|..+++.+|++.. ++++-|.++...+.-. +|++-|+.++.. ++..|.++++.|..+....
T Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-------~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g- 320 (359)
T 3ieg_A 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV-------EAIRICSEVLQM-EPDNVNALKDRAEAYLIEE- 320 (359)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHh-CcccHHHHHHHHHHHHHcC-
Confidence 56788889999999999874 4555566665566644 455555555554 3345899999999986543
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.|+.++|+++.+...|..|...+.
T Consensus 321 -----------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 321 -----------MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp -----------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 3678999999999999999999999998876553
No 22
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.96 E-value=1.9e-09 Score=84.12 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhH
Q 036322 150 ARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACE 229 (360)
Q Consensus 150 a~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~e 229 (360)
...|.+++.++|.+..+++++|.+|+..|.
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~-------------------------------------------------- 33 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGK-------------------------------------------------- 33 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTTC--------------------------------------------------
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHcc--------------------------------------------------
Confidence 357888999999999999999977764322
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 230 ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
+.+|.+.|..++..+|+++.++++-|.++...+. |.+|+.-|+.++.+.+ ..|.++++-|.++..+-
T Consensus 34 -----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 34 -----WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-------YEQALQSYSYGALMDI-NEPRFPFHAAECHLQLG 100 (142)
T ss_dssp -----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 2345567889999999999999999999887666 4566666666676644 56999999999987664
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
. +.+|+..|+.|+.++|++++.......|..-
T Consensus 101 ~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 101 D------------LDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp C------------HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred C------------HHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 3 5678999999999999999887776666543
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.95 E-value=7.9e-08 Score=77.30 Aligned_cols=185 Identities=16% Similarity=0.054 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHcCcCC-------hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch-HHHH---HHhhhhhhhh
Q 036322 146 LHKSARLLSQAIAMQHMS-------LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV-EEQK---RILKGLDYQF 214 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s-------~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~-~~~~---r~~~~ld~~~ 214 (360)
+.+|.+.|.+++++.|.. ..++.++|.+|...|....-+. -+..++.-.+.... ...+ .+..-++.-+
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE-YYQKSLTEHRTADILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH
Confidence 457888999999999987 7999999999999888765432 23333332211000 0000 0011111000
Q ss_pred cchhHHHHHHHHhhH--HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC
Q 036322 215 MNKDKIASLLVDACE--ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI 292 (360)
Q Consensus 215 ~~k~~~~~aL~~~~e--EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~ 292 (360)
........+....+. .-..-+.+|.+.|..+++++|++..++++.|.++...+.-.+|...|..| +...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-------l~~~~- 204 (258)
T 3uq3_A 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA-------IEKDP- 204 (258)
T ss_dssp HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------HHHCT-
T ss_pred HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH-------HHhCH-
Confidence 000001111111111 11123677888999999999999999999999998877755555555555 44433
Q ss_pred ChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccC------CCchHHHHHHHhhh
Q 036322 293 YAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMN------SDNLQVREALSSCM 351 (360)
Q Consensus 293 ~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLd------pd~~qa~~Al~~c~ 351 (360)
..+.++++.|.++..+- -+++|+..|+.|+.++ |+++.+...|..|.
T Consensus 205 ~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVK------------EYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 45899999999987663 2467888888888888 99999999999884
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.93 E-value=2.1e-07 Score=79.67 Aligned_cols=182 Identities=13% Similarity=0.052 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+|++++|.++.++.++|.+|...|....-+. .++.++.-. |......... ..+.. ......... .+.
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~~-~~~~~-~~~~~~~~~-~~~ 189 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE-ILRDWLRYT-PAYAHLVTPA-EEGAG-GAGLGPSKR-ILG 189 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTS-TTTGGGCC-----------------C-TTH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-cCcHHHHHHH-HHHhh-hhcccHHHH-HHH
Confidence 356666777777777777777777777666665543222 222223221 1111000000 00000 000000000 011
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCC--chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGN--DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~--d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
.+- ...-+.+|...|..+++++|+ +..++++-|.++...|.-.+|..+|..|+ .+.+ ..+.++++.|..
T Consensus 190 ~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~~-~~~~~~~~l~~~ 260 (368)
T 1fch_A 190 SLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL-------SVRP-NDYLLWNKLGAT 260 (368)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHH
T ss_pred HHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCc-CCHHHHHHHHHH
Confidence 111 234567888899999999999 89999999999888777555555555544 4333 458999999998
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 305 LQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 305 LqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+...- -+.+|+..|++++.++|+++.+...|..|-..+
T Consensus 261 ~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 261 LANGN------------QSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHcC------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 76543 267788899999999999999888887775543
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.92 E-value=6.6e-08 Score=80.60 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc-cCCChhHHHhhHHHHHHHhhh---
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK-GNIYAPDALFGWAVALQQRSR--- 310 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~-~n~~ap~AL~NWGlALqerA~--- 310 (360)
+.+|.+.|..+++++|++..++++-|.++...+.-.+|...|..|++.+...-.. .....+.++++.|..+...-.
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 5678888999999999999999999999998888777777777777654211110 001123455555544433322
Q ss_pred ----------cCCCChH---------HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 311 ----------LRPRNSK---------EKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 311 ----------lr~~ssk---------Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+.|.+.. .+..-+..|+..|++|+.++|+++.+...|..|.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 0111100 1112356788888888888888888888888876
No 26
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.90 E-value=8.1e-09 Score=105.71 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=119.5
Q ss_pred cCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHH
Q 036322 159 MQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKA 238 (360)
Q Consensus 159 ~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eA 238 (360)
-.|.+.+|+.|||++|...|++..-+.. ++.++.-. |..... --+++.++...+ -+.+|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~-~~kAl~l~-P~~~~a--------------~~nLg~~l~~~g-----~~~eA 62 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRL-YRKALEVF-PEFAAA--------------HSNLASVLQQQG-----KLQEA 62 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHC-SCCHHH--------------HHHHHHHHHHTT-----CHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhC-CCCHHH--------------HHHHHHHHHHcC-----CHHHH
Confidence 4699999999999999999998765432 34444332 322111 112344444332 25677
Q ss_pred HHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHH
Q 036322 239 GRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKE 318 (360)
Q Consensus 239 grKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskE 318 (360)
...|++|++++|++.+|++|.|.++...+. +.+|++-|++++++.+ ..++|++|.|.++.++-+
T Consensus 63 ~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~-------~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~-------- 126 (723)
T 4gyw_A 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQD-------VQGALQCYTRAIQINP-AFADAHSNLASIHKDSGN-------- 126 (723)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC--------
Confidence 889999999999999999999999998665 6789999999999744 569999999999987653
Q ss_pred HHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 319 KVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 319 k~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
+++|+..|++||.++|+++.+...|..|...+.
T Consensus 127 ----~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 127 ----IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp ----HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 678999999999999999999999998876654
No 27
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=2.2e-08 Score=78.53 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRR 190 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ 190 (360)
|.+.-+.+.+.|+.+.++++ +.+|+++|.+||+++|.++.++.++|.+|...|+.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---------- 63 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGD---------------YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF---------- 63 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------
T ss_pred CHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH----------
Confidence 44445566666666666432 56789999999999999999999999988854322
Q ss_pred HhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchh
Q 036322 191 LLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAF 270 (360)
Q Consensus 191 lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~ 270 (360)
.+|..-|..||+++|+..++++|.|.++..-+.
T Consensus 64 ---------------------------------------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-- 96 (126)
T 4gco_A 64 ---------------------------------------------QRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-- 96 (126)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred ---------------------------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC--
Confidence 334457888999999999999999999988766
Q ss_pred cHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 271 DADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 271 eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
|.+|++-|+.++.+-| ..++|+.+-|.+|
T Consensus 97 -----~~~A~~~~~~al~l~P-~~~~a~~~l~~~l 125 (126)
T 4gco_A 97 -----WSKAQRAYEDALQVDP-SNEEAREGVRNCL 125 (126)
T ss_dssp -----HHHHHHHHHHHHHHCT-TCHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHHCc-CCHHHHHHHHHhc
Confidence 5667777777777633 5689988887764
No 28
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.88 E-value=1.4e-07 Score=82.33 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+-|..|+..+|++..+++++|..+...|...+|..+|..|+.... +.+...+..+.+|+..+....
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~----l~p~~~~~l~~~~~~~~~~~g----- 255 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS----LPPEKSGEIWARFLAFESNIG----- 255 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS----SCGGGCHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHcC-----
Confidence 45677889999999999999999999999888887778777777665320 122235678899998876543
Q ss_pred ChHHHHHHHHHHHHHHHH---------------hhccCCCchHHHHHH
Q 036322 315 NSKEKVKLLQQARRLYQD---------------ALHMNSDNLQVREAL 347 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~---------------ALrLdpd~~qa~~Al 347 (360)
+..+...++++|...+-+ .+.++|++++++++|
T Consensus 256 ~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 256 DLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTTCBTTBCSSCHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcccccccchHHHHHHHHHhcccCCCCHHHHHhc
Confidence 245556666666666543 355777777777765
No 29
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.88 E-value=1e-07 Score=83.21 Aligned_cols=163 Identities=12% Similarity=-0.040 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCc------CChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHH
Q 036322 147 HKSARLLSQAIAMQH------MSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKI 220 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P------~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~ 220 (360)
.+|+.+|.+|+++.| .-..++.|+|++|...|+...-+.. ++.++.-. .. .......
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~-~~~Al~l~------------~~----~g~~~~~ 116 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS-LENAIQIF------------TH----RGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHH------------HH----TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHH------------HH----cCCHHHH
Confidence 456677778887743 2367999999999988877654322 11111100 00 0001112
Q ss_pred HHHHHHhhHHHHHH---HHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 221 ASLLVDACEECEEL---LVKAGRKYRLALSIDGND------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 221 ~~aL~~~~eEaEeL---L~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
+.++...+.-.+.. +.+|.+.|+.|+++.|++ ..+++|.|.++...|.- .+|++-|+.++.+.+
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY-------IEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHh
Confidence 22333333333332 677888999999988865 56789999999887774 455555665555432
Q ss_pred CC------hhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 292 IY------APDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 292 ~~------ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.. ...+|++.|+.+..+- -..+|+..|++++.++|+++.+.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAAT------------DAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTT------------CHHHHHHHHHGGGCC---------
T ss_pred cCCcccHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCCCcHH
Confidence 21 1247889998876543 257889999999999999887643
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1e-06 Score=70.88 Aligned_cols=203 Identities=9% Similarity=0.040 Sum_probs=126.5
Q ss_pred HHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCC
Q 036322 121 EANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDV 197 (360)
Q Consensus 121 ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p 197 (360)
.+..+...|..++..++ +.+|.+.|.+++.++ .++.++.++|.+|...|....-+.. ++.++ +...|
T Consensus 4 ~a~~~~~~g~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~-~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQ--------FDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAIST-LNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHH-HHHHHHhCccccc
Confidence 34455555555554443 457888999999999 9999999999999999877654322 22222 22211
Q ss_pred cchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHH------------HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 198 ISVEEQKRILKGLDYQFMNKDKIASLLVDACEECE------------ELLVKAGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 198 ~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaE------------eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
. ......+...+-.-.....+...|+. ....+- .-+.+|.+.|..++..+|++..++++-|.++..
T Consensus 74 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 74 D-YKVISKSFARIGNAYHKLGDLKKTIE-YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp C-HHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 1 11111111111100000011111111 111111 224556667888888999999999999999988
Q ss_pred ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 266 LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 266 ~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.+.-.+|...| +.++...+ ..+.++++.|..+...- -+..|+..|+.++.++|+++.+..
T Consensus 152 ~~~~~~A~~~~-------~~a~~~~~-~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~ 211 (258)
T 3uq3_A 152 KSDWPNAVKAY-------TEMIKRAP-EDARGYSNRAAALAKLM------------SFPEAIADCNKAIEKDPNFVRAYI 211 (258)
T ss_dssp TTCHHHHHHHH-------HHHHHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcCHHHHHHHH-------HHHHhcCc-ccHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHhCHHHHHHHH
Confidence 77755555544 44444433 35899999999976543 256789999999999999999998
Q ss_pred HHHhhhhhcc
Q 036322 346 ALSSCMSELN 355 (360)
Q Consensus 346 Al~~c~~el~ 355 (360)
.+..|-..++
T Consensus 212 ~l~~~~~~~g 221 (258)
T 3uq3_A 212 RKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8887765543
No 31
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.86 E-value=1.9e-07 Score=85.79 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh----
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR---- 310 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~---- 310 (360)
+.+|.+-|..+++++|++..++++.|.++...|...+|.++|.++++.+... ...+...+.++++.|.++...-.
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 5667777888888888888888888888888777777777777776654311 00010113455555555443322
Q ss_pred ---------cCCCChH---------HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 311 ---------LRPRNSK---------EKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 311 ---------lr~~ssk---------Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
+.|.+.. .+..-+++|+..|++++.++|+++.+...|..|-.
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 1111110 01112567788888888888888888888877754
No 32
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.85 E-value=2e-07 Score=82.29 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhhCCCch----hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 234 LLVKAGRKYRLALSIDGNDV----RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~----~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
-+.+|.+-|..+++++|++. .++++.|.++...|.-.+|..++. .++.+.+ ..+.++++.|.++...-
T Consensus 272 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~a~~~~p-~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS-------EVLQMEP-DNVNALKDRAEAYLIEE 343 (450)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------HHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH-------HHHHhCc-ccHHHHHHHHHHHHHhc
Confidence 35778889999999999984 488888988888777555555544 4444433 45899999999986543
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
-+++|+..|+.|+.++|+++.+...|..|...
T Consensus 344 ------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 344 ------------MYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp ------------CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 36789999999999999999999999876443
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.84 E-value=4.3e-08 Score=92.25 Aligned_cols=171 Identities=9% Similarity=-0.020 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|+++|.+||+++|.+..+++++|.+|...|+...-+. .++.++.-. |... ..++.++..+
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~-~~~kal~ld-P~~~~a~~~lg~~~~~~------------ 213 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE-FIADILNQD-AKNYHAWQHRQWVIQEF------------ 213 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhC-ccCHHHHHHHHHHHHHc------------
Confidence 6789999999999999999999999999999887765433 234444332 3221 1122222211
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF-LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
..+.+|...|..||+++|++..|++|-|.++.. .+... ++++..+++-|+.++.+.+ ..+.++++.
T Consensus 214 ----------g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~--eA~~~~el~~~~~Al~l~P-~~~~a~~~l 280 (382)
T 2h6f_A 214 ----------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND--RAVLEREVQYTLEMIKLVP-HNESAWNYL 280 (382)
T ss_dssp ----------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS--HHHHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred ----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 124567889999999999999999999999988 44322 3446677888999998744 458999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
|..|..+.. . -+..|+..++++ .++|+++.++..|..|..++
T Consensus 281 ~~ll~~~g~---~-------~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 281 KGILQDRGL---S-------KYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHTTTCG---G-------GCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHccCc---c-------chHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 999877331 0 123356667776 89999999999999888765
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.84 E-value=1.3e-07 Score=84.47 Aligned_cols=184 Identities=11% Similarity=-0.047 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH--HHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL--HFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl--~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
.+|..+|.+|++++|.++++..++|+++...|.... +....++.++.-. |..... .. .++-.+
T Consensus 155 ~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~--~~------------~l~~~~ 219 (472)
T 4g1t_A 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL--KV------------LLALKL 219 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH--HH------------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH--HH------------HHHHHH
Confidence 479999999999999999999999999887665431 1112233333222 221111 11 111111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
..+. ....-+.+|.+.|..|+.++|+...+++|-|.++...+.. .+|++-|+.++...| ..+.++++-|..
T Consensus 220 ~~~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~p-~~~~~~~~lg~~ 290 (472)
T 4g1t_A 220 HKMR-EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEP-------DKAIELLKKALEYIP-NNAYLHCQIGCC 290 (472)
T ss_dssp HHCC-------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred HHHH-hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCch-------HHHHHHHHHHHHhCC-ChHHHHHHHHHH
Confidence 1111 1122345677788999999999999999999998887764 455555566666533 568999999988
Q ss_pred HHHhhh-------cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 305 LQQRSR-------LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 305 LqerA~-------lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+..... ..............+|+..|++|+.++|+++.+...+..|-..+
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 754322 12223345566788899999999999998887777666655443
No 35
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.83 E-value=2.8e-07 Score=78.85 Aligned_cols=169 Identities=14% Similarity=0.066 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHcCcCChHHHh----------------hhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhh
Q 036322 147 HKSARLLSQAIAMQHMSLLAVD----------------QLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGL 210 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avg----------------n~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~l 210 (360)
.+|.+.|.+++.+.|.+..++. ++|..+ ..|....-+. -++.++... |... ...+..
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~-~~~~a~~~~-p~~~--~~~~~~-- 221 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKE-LFLAAVRLD-PTSI--DPDVQC-- 221 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHH-HHHHHHHHS-TTSC--CHHHHH--
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHH-HHHHHHHhC-cCcc--cHHHHH--
Confidence 5788999999999999998887 677665 6665543322 233333332 2200 001111
Q ss_pred hhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 211 DYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 211 d~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
.++..+... .-+.+|.+.|..++.++|++..++++-|.++...|...+|...|..| +.+.
T Consensus 222 --------~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------l~~~ 281 (368)
T 1fch_A 222 --------GLGVLFNLS-----GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA-------LELQ 281 (368)
T ss_dssp --------HHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------HHHC
T ss_pred --------HHHHHHHHc-----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhC
Confidence 112222211 22466777889999999999999999999998888755555555554 4443
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc-----------hHHHHHHHhhhhhcc
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN-----------LQVREALSSCMSELN 355 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~-----------~qa~~Al~~c~~el~ 355 (360)
+ ..+.++++.|.++..+- -+..|+..|+.|+.++|++ +.+...|..|-..+.
T Consensus 282 ~-~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 282 P-GYIRSRYNLGISCINLG------------AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp T-TCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred C-CcHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 3 45899999999986654 3667888899999999988 788888888776654
No 36
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.83 E-value=1.9e-07 Score=80.89 Aligned_cols=186 Identities=12% Similarity=0.037 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcc---h--------------------HH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVIS---V--------------------EE 202 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s---~--------------------~~ 202 (360)
+.+|.+.|.+|++++|.+..++.++|++|...|....-+. .++.++.-. |.. . ..
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE-ALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-HHHHCC-------------------CCHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHH-HHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhh
Confidence 4578889999999999999999999999999887764332 122222211 110 0 00
Q ss_pred HHHHhhhhhhh---hcchhHHHHHHHHhh--HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHH
Q 036322 203 QKRILKGLDYQ---FMNKDKIASLLVDAC--EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFS 277 (360)
Q Consensus 203 ~~r~~~~ld~~---~~~k~~~~~aL~~~~--eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~ 277 (360)
...+..-++.- .+... -..++...+ -.-..-+.+|.+.|..+++++|++..++++.|.++...|.-.+|...|.
T Consensus 193 ~~~A~~~~~~al~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 01111101000 00000 001111111 1111235778889999999999999999999999998777555555555
Q ss_pred HHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc------------hHHHH
Q 036322 278 AAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN------------LQVRE 345 (360)
Q Consensus 278 aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~------------~qa~~ 345 (360)
. ++.+.+ ..+.++++.|.++..+-. +.+|+..|+.|+.++|+. ..+..
T Consensus 272 ~-------al~~~p-~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 272 R-------ALEIQP-GFIRSRYNLGISCINLGA------------YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp H-------HHHHCT-TCHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred H-------HHhcCC-CchHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 4 444433 458999999999876643 456788888888888873 55666
Q ss_pred HHHhhhhhc
Q 036322 346 ALSSCMSEL 354 (360)
Q Consensus 346 Al~~c~~el 354 (360)
.|..|...+
T Consensus 332 ~l~~~~~~~ 340 (365)
T 4eqf_A 332 ALRIALSLM 340 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666665443
No 37
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=9.3e-09 Score=92.97 Aligned_cols=131 Identities=17% Similarity=0.202 Sum_probs=102.9
Q ss_pred HHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhh
Q 036322 149 SARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDAC 228 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~ 228 (360)
|...|.++++.+|....++.++|++|...|..
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~------------------------------------------------ 163 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKY------------------------------------------------ 163 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCH------------------------------------------------
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCH------------------------------------------------
Confidence 45566777888999999999999988864332
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCc---------------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCC
Q 036322 229 EECEELLVKAGRKYRLALSIDGND---------------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIY 293 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d---------------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ 293 (360)
.+|...|..|++++|++ ..+++|.|.++...+. |.+|++-|+.++.+.+ .
T Consensus 164 -------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-------~~~A~~~~~~al~~~p-~ 228 (336)
T 1p5q_A 164 -------KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-------FSAAIESCNKALELDS-N 228 (336)
T ss_dssp -------HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-T
T ss_pred -------HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-C
Confidence 34455777777777777 6999999999988776 4566666777777644 4
Q ss_pred hhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 294 APDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 294 ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
.+.+|++.|.++..+-. +.+|+..|++||.++|+++.+...|..|...+
T Consensus 229 ~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVND------------FELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp CHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 68999999999877643 67899999999999999999999988886554
No 38
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=5.1e-08 Score=92.29 Aligned_cols=165 Identities=13% Similarity=-0.052 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.++|.+|++++|.+..++.++|.+|...|+...-+. .++.++.-. |.... +. ..++.++.
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~-p~~~~----~~----------~~lg~~~~ 68 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEM-AVQRGLALH-PGHPE----AV----------ARLGRVRW 68 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHTTS-TTCHH----HH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCCHH----HH----------HHHHHHHH
Confidence 3568889999999999999999999999999887764332 344444432 32211 11 11222222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
.. .-+.+|.+.|..|++++|++..+++|-|.++...+... +|++-|++++.+.+ ..+.++++.|.++
T Consensus 69 ~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~p-~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 69 TQ-----QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAE-------AAAAAYTRAHQLLP-EEPYITAQLLNWR 135 (568)
T ss_dssp HT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HC-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 21 22577888999999999999999999999998877754 45555555555533 4589999999998
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
..+.... -..+|...|++++.++|++......|.
T Consensus 136 ~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 136 RRLCDWR---------ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTTCCT---------THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHhhccc---------cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 7652111 257899999999999999988766554
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.80 E-value=4.8e-07 Score=72.63 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+++.+.|.+..++.++|.+|...|....-+. -+..++... |.... +.. .++..+.
T Consensus 73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~----~~~----------~~a~~~~ 136 (243)
T 2q7f_A 73 LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD-MFEKALRAG-MENGD----LFY----------MLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHT-CCSHH----HHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHH-HHHHHHHhC-CCCHH----HHH----------HHHHHHH
Confidence 3567788888888899999999999999888877654322 223333222 21110 100 1111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
.. .-+.+|...|..+++++|++..++++.|.++...+.-.+|...|..+++ ..+ ..+.++++.|.++
T Consensus 137 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~-~~~~~~~~la~~~ 203 (243)
T 2q7f_A 137 KL-----EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTE-------QDP-GHADAFYNAGVTY 203 (243)
T ss_dssp HT-----SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------HCT-TCHHHHHHHHHHH
T ss_pred Hh-----ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCc-ccHHHHHHHHHHH
Confidence 11 2246677788889999999999999999998887776666666555544 323 4588999999887
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
...-. +.+|...|+.++.++|+++.+..++.....
T Consensus 204 ~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 204 AYKEN------------REKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHTTC------------TTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHccC------------HHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 65432 456788999999999999999988765543
No 40
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.80 E-value=4.9e-07 Score=75.36 Aligned_cols=80 Identities=14% Similarity=-0.044 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhhC---------CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 235 LVKAGRKYRLALSID---------GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 235 L~eAgrKY~~Al~~d---------p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
+.+|...|..++++. |....++++-|.++...+.-.+|...|..++ .+.+ ..+.++++.|..+
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-------~~~~-~~~~~~~~la~~~ 280 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL-------VLIP-QNASTYSAIGYIH 280 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHST-TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------hhCc-cchHHHHHHHHHH
Confidence 455666777777765 6777889988888877777555555554444 4323 3578888888888
Q ss_pred HHhhhcCCCChHHHHHHHHHHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQAR 327 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~ 327 (360)
..+.. ..++.+.+++|.
T Consensus 281 ~~~g~-----~~~A~~~~~~al 297 (330)
T 3hym_B 281 SLMGN-----FENAVDYFHTAL 297 (330)
T ss_dssp HHHTC-----HHHHHHHHHTTT
T ss_pred HHhcc-----HHHHHHHHHHHH
Confidence 76653 345666666554
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.79 E-value=7.8e-07 Score=72.56 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
+|.++|.++++++|.+..++.++|.+|...|....
T Consensus 55 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 89 (252)
T 2ho1_A 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKL 89 (252)
T ss_dssp GGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Confidence 45566666777777777777777777777665543
No 42
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.1e-07 Score=94.60 Aligned_cols=163 Identities=12% Similarity=-0.080 Sum_probs=117.0
Q ss_pred HHHHHHHHHHH--------HcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchh
Q 036322 147 HKSARLLSQAI--------AMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKD 218 (360)
Q Consensus 147 ~~Aa~~~s~Al--------~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~ 218 (360)
.+|.+.|.+|+ +.+|.+..++.++|.+|+..|+...-+. .++.++... |.... ...
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~-p~~~~--a~~------------ 471 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATR-KLDDLAERV-GWRWR--LVW------------ 471 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHH-CCCHH--HHH------------
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHH-HHHHHhccC-cchHH--HHH------------
Confidence 57888899999 9999999999999999999988765433 234444322 22110 000
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 219 KIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 219 ~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
.++.++.. ..-+.+|.+.|+.|++++|++..+++|-|.++...|.-.+ ++-|++++.+ +...+.++
T Consensus 472 ~lg~~~~~-----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~--------~~~~~~al~~-~P~~~~a~ 537 (681)
T 2pzi_A 472 YRAVAELL-----TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE--------HKFYQTVWST-NDGVISAA 537 (681)
T ss_dssp HHHHHHHH-----HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT--------TCHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH--------HHHHHHHHHh-CCchHHHH
Confidence 11111111 1235678889999999999999999999999988666443 4445555665 33458999
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+|-|.++..+-+ +++|+..|++|+.++|+++.+...+..|.
T Consensus 538 ~~lg~~~~~~g~------------~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 538 FGLARARSAEGD------------RVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC------------HHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 999999876543 56899999999999999999998877764
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.78 E-value=2.3e-07 Score=81.03 Aligned_cols=168 Identities=10% Similarity=-0.071 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHH-------HHHH------HHHHHHHHHHhccCCCcchHHHHHHhhhh
Q 036322 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVR-------EELK------LHFSCKLRRLLLEGDVISVEEQKRILKGL 210 (360)
Q Consensus 144 ~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~-------GeLK------l~~s~~Lr~lla~~~p~s~~~~~r~~~~l 210 (360)
.+..+|...|.+|+..+|.++.+..++|..+... |... .+....++.++..-.|.+..-|-.
T Consensus 30 ~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~----- 104 (308)
T 2ond_A 30 LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA----- 104 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHH-----
Confidence 3447889999999999999999999999998754 3321 111122333333212322211111
Q ss_pred hhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchh-hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc
Q 036322 211 DYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVR-ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 211 d~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~-ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
++..+.. ..-+.+|.+-|.+|++++|++.. +++++|..+...+...+|.++| +.++..
T Consensus 105 ---------~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~-------~~a~~~ 163 (308)
T 2ond_A 105 ---------YADYEES-----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF-------KKARED 163 (308)
T ss_dssp ---------HHHHHHH-----TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHTS
T ss_pred ---------HHHHHHh-----cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHH-------HHHHhc
Confidence 1111111 11245677788888888998887 8888988877655544444444 444443
Q ss_pred cCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 290 GNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 290 ~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
.+ ..++++..+|.. +... .+ -..+|+..|+.||.++|+++.+...+..
T Consensus 164 ~p-~~~~~~~~~a~~--~~~~--~~-------~~~~A~~~~~~al~~~p~~~~~~~~~~~ 211 (308)
T 2ond_A 164 AR-TRHHVYVTAALM--EYYC--SK-------DKSVAFKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp TT-CCTHHHHHHHHH--HHHT--SC-------CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHH--HHHH--cC-------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33 234555533332 1110 01 1334556666666666666665555443
No 44
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.77 E-value=8.6e-08 Score=72.06 Aligned_cols=100 Identities=18% Similarity=0.105 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|..|++++|++..+++|-|.++...+. |.+|++-|+.++.+.+ ..+.++++.|.++..+-.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~---- 87 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-------FPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKE---- 87 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhC----
Confidence 4677789999999999999999999999988666 5666777777777644 458999999999877643
Q ss_pred ChHHHHHHHHHHHHHHHHhhccC------CCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMN------SDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLd------pd~~qa~~Al~~c~~el 354 (360)
+.+|+..|++|+.++ |+++.+...|..|...+
T Consensus 88 --------~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 88 --------YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 578999999999999 99999999999998765
No 45
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.76 E-value=1.4e-06 Score=72.46 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
-+.+|.+.|..+++.+|++..++++-|.++...+...+|..+|..++ ...+ ..+.++++.|..+...-
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-------~~~~-~~~~~~~~l~~~~~~~~---- 220 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV-------ELRP-DDAQLWNKLGATLANGN---- 220 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHHHHTT----
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-------HhCC-CcHHHHHHHHHHHHHcC----
Confidence 35677788899999999999999999999888777555555555544 4333 45889999998876543
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-+.+|+..|++++.++|+++.+...+..|-..+
T Consensus 221 --------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 221 --------RPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 256788899999999999999888887776544
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.76 E-value=2.8e-07 Score=73.97 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|...|.+++...|.+..++.++|.+|...|....-+. .++.++... |... .+.. .++..+.
T Consensus 39 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~-~~~~----~~~~----------~la~~~~ 102 (243)
T 2q7f_A 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALA-FYDKALELD-SSAA----TAYY----------GAGNVYV 102 (243)
T ss_dssp ---CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCH----HHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcC-Ccch----HHHH----------HHHHHHH
Confidence 4567788999999999999999999999999887764432 233333322 2211 1110 1111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
. ..-+.+|.+.|..+++++|++..++++.|.++...+...+|..+|..+++ +.+ ..+.++++.|..+
T Consensus 103 ~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~~-~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 103 V-----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-------LNE-NDTEARFQFGMCL 169 (243)
T ss_dssp H-----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-------HCT-TCHHHHHHHHHHH
T ss_pred H-----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------hCC-ccHHHHHHHHHHH
Confidence 1 12356777788999999999999999999998888876666666555554 323 3588999999987
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
..... ++.|+..|+.++.++|+++.+...+..|-..++
T Consensus 170 ~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 170 ANEGM------------LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HHHTC------------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHcCC------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence 65542 456788889999999999999888887765543
No 47
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.75 E-value=1.9e-06 Score=76.00 Aligned_cols=94 Identities=12% Similarity=-0.075 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
-+.+|.+-|..+++++|++..++++-|.++...|...+|..+|..+++.. + ..+.++++.|..+...-
T Consensus 158 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~~~~~~l~~~~~~~g---- 225 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-------N-DNTEAFYKISTLYYQLG---- 225 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-------C-SCHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------C-CCHHHHHHHHHHHHHcC----
Confidence 35678888999999999999999999999998888877877777776653 2 34899999999887653
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
-+.+|+..|+.++.++|+++.+...+
T Consensus 226 --------~~~~A~~~~~~~~~~~p~~~~~~~~~ 251 (450)
T 2y4t_A 226 --------DHELSLSEVRECLKLDQDHKRCFAHY 251 (450)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 25778899999999999999987665
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.74 E-value=2.8e-07 Score=77.04 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=110.0
Q ss_pred cCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHH
Q 036322 161 HMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGR 240 (360)
Q Consensus 161 P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgr 240 (360)
|.++.++.++|++|+..|+...-+. .++.++... |..... .. .++.++...+ -+.+|..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~-p~~~~a----~~----------~lg~~~~~~g-----~~~~A~~ 60 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALT-LFERALKEN-PQDPEA----LY----------WLARTQLKLG-----LVNPALE 60 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTS-SSCHHH----HH----------HHHHHHHHTT-----CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCCHHH----HH----------HHHHHHHHcC-----CHHHHHH
Confidence 8899999999999999988765433 345555443 332211 11 1222222211 2467778
Q ss_pred HHHHHhhhCCCchhhHHhHHHhhhcc----cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 241 KYRLALSIDGNDVRALYNWGLALFFL----ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 241 KY~~Al~~dp~d~~ALYNWGlAL~~~----~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
.|..|++++|++..+++|-|.++... +....+..-+.+|+.-|++++.+.| ..+.++++.|.++...-+
T Consensus 61 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~------ 133 (217)
T 2pl2_A 61 NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGE------ 133 (217)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999998773 0111111457788888888888644 568999999999876543
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+.+|+..|++||.++ +++.+...|..|-..+
T Consensus 134 ------~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~ 164 (217)
T 2pl2_A 134 ------RDKAEASLKQALALE-DTPEIRSALAELYLSM 164 (217)
T ss_dssp ------HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc
Confidence 567899999999999 9999988877775443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.73 E-value=1.4e-06 Score=68.60 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
.+|.+.|.+++++.|.+..++.++|.+|...|...
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 59 (225)
T 2vq2_A 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVND 59 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChH
Confidence 34555556666666666666666666666555443
No 50
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=2.1e-07 Score=74.71 Aligned_cols=151 Identities=9% Similarity=0.024 Sum_probs=97.5
Q ss_pred hhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 036322 124 DLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ 203 (360)
Q Consensus 124 ~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~ 203 (360)
.++.+|...+..|+ +.+|...|.+|++++|.++.++.++|.+|+..|+...-+. .++.++... | .. ..
T Consensus 8 ~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~-~~~~a~~~~-p-~~-~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGE--------HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE-LLATIPLEY-Q-DN-SY 75 (176)
T ss_dssp THHHHHHHHHHTTC--------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHH-HHTTCCGGG-C-CH-HH
T ss_pred HHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHhhhcc-C-Ch-HH
Confidence 34455555544443 4568889999999999999999999999999888764332 234433332 2 11 11
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 204 KRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 204 ~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
......+ ......+ ...|...|+.|++++|++..++++.|.++...|... +|++-|
T Consensus 76 ~~~~~~~---------------~~~~~~~--~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~-------~A~~~~ 131 (176)
T 2r5s_A 76 KSLIAKL---------------ELHQQAA--ESPELKRLEQELAANPDNFELACELAVQYNQVGRDE-------EALELL 131 (176)
T ss_dssp HHHHHHH---------------HHHHHHT--SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH-------HHHHHH
T ss_pred HHHHHHH---------------HHHhhcc--cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH-------HHHHHH
Confidence 1100000 0000000 012567899999999999999999999999877754 455555
Q ss_pred HHHHhccCC-ChhHHHhhHHHHHHHhhh
Q 036322 284 DAMMLKGNI-YAPDALFGWAVALQQRSR 310 (360)
Q Consensus 284 ~AAl~~~n~-~ap~AL~NWGlALqerA~ 310 (360)
+.++.+.+. ..+.++++.|..+..+..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 556665332 236799999999887754
No 51
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.73 E-value=5e-07 Score=81.39 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-------ccchhcHHHHHHHH----------------------
Q 036322 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF-------LETAFDADKIFSAA---------------------- 279 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-------~~~a~eAe~L~~aA---------------------- 279 (360)
.++..-+.+|...|..+++.+|++..+.++-+.++.. .+...+|...|..+
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence 4455678899999999999999998765555544433 44444444443333
Q ss_pred ----HHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 280 ----IDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 280 ----~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++-|+.++...+ ..|.++++.|..+...- -+.+|+..|++++.++|+++.+...+..|-..+
T Consensus 292 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQ------------DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357 (537)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 333333333322 23455555555543322 245667777777777777777766666655443
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.73 E-value=5.2e-07 Score=80.69 Aligned_cols=115 Identities=15% Similarity=0.072 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC--ChhHHHhhHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI--YAPDALFGWAVALQ 306 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~--~ap~AL~NWGlALq 306 (360)
......+..|...|..|++++|+...++++-|.+....+.-.+|...|..| +.+.+. ....++++.|..+.
T Consensus 310 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka-------L~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE-------FSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH-------HHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH-------HhcCCCChHHHHHHHHHHHHHH
Confidence 445567888999999999999999999999999988877755555555544 443221 11234555554321
Q ss_pred -H-------------hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 307 -Q-------------RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 307 -e-------------rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+ --++.|. ..++...+..+...++.+|.++|+++.+..-|-.|-
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~-~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQK-SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCC-CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 1123443 345555666666666777777777777766665543
No 53
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.71 E-value=1.7e-07 Score=74.02 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|...|.++++.+|.++.++.++|.+|...|.
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---------------------------------------------- 59 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQND---------------------------------------------- 59 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------------------------------------------
Confidence 3457788999999999999999999988875322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhh-cccch--hcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF-FLETA--FDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~-~~~~a--~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
+.+|...|..+++++|++..++++.|.+|. ..+.. .+|...| +.++.+.+ ..+.++++.|
T Consensus 60 ---------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~-------~~al~~~p-~~~~~~~~la 122 (177)
T 2e2e_A 60 ---------YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI-------DKALALDS-NEITALMLLA 122 (177)
T ss_dssp ---------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH-------HHHHHHCT-TCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH-------HHHHHhCC-CcHHHHHHHH
Confidence 134556788899999999999999999954 34543 4455544 44445433 4589999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
..+...- -+.+|+..|+.++.++|+++....
T Consensus 123 ~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 123 SDAFMQA------------NYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHTT------------CHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHcc------------cHHHHHHHHHHHHhhCCCCccHHH
Confidence 9877653 356799999999999999876543
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.70 E-value=1.3e-06 Score=77.35 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
-+.+|..-|..+++.+|++..+++|=|.++...|.-.+|...|.+|++ + ++..|++++|.|..+..+-+
T Consensus 181 ~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-------~-~p~~~~~l~~l~~~~~~~g~--- 249 (291)
T 3mkr_A 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD-------K-DSGHPETLINLVVLSQHLGK--- 249 (291)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------H-CTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------h-CCCCHHHHHHHHHHHHHcCC---
Confidence 357788899999999999999999999999988886666666665554 3 23469999999999877442
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
. -+.+..+|++++.++|++|.+++-
T Consensus 250 --~------~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 250 --P------PEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp --C------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --C------HHHHHHHHHHHHHhCCCChHHHHH
Confidence 1 123567889999999999998864
No 55
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=3.6e-07 Score=80.18 Aligned_cols=151 Identities=10% Similarity=0.007 Sum_probs=99.2
Q ss_pred hhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 036322 124 DLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ 203 (360)
Q Consensus 124 ~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~ 203 (360)
.++.+|...+..|+ +..|...|.+|++++|.++.|++++|.+|+..|+...-+. .|+.++... |.. ..
T Consensus 119 ~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~-~l~~~~~~~-p~~--~~ 186 (287)
T 3qou_A 119 LXAQQAMQLMQESN--------YTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEA-VLXTIPLQD-QDT--RY 186 (287)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHH-HHTTSCGGG-CSH--HH
T ss_pred hHHHHHHHHHhCCC--------HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHH-HHHhCchhh-cch--HH
Confidence 45555555554443 3457789999999999999999999999999988774332 344443332 311 11
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 204 KRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 204 ~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
.....++ .+.... -..+|.+.|+.++..+|++++++||-|.++...|...+|.. -|
T Consensus 187 ~~~~~~~------------~l~~~~-----~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~-------~l 242 (287)
T 3qou_A 187 QGLVAQI------------ELLXQA-----ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE-------LL 242 (287)
T ss_dssp HHHHHHH------------HHHHHH-----TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-------HH
T ss_pred HHHHHHH------------HHHhhc-----ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH-------HH
Confidence 1111111 111111 12346678999999999999999999999998887555554 45
Q ss_pred HHHHhcc-CCChhHHHhhHHHHHHHhhh
Q 036322 284 DAMMLKG-NIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 284 ~AAl~~~-n~~ap~AL~NWGlALqerA~ 310 (360)
..++.+. +...++|+.+.|..+..+-+
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCC
Confidence 5555542 22337899999999887654
No 56
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.67 E-value=1.4e-07 Score=74.46 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|..|++++|++..+++|.|.++...+. |.+|++-|+.++.+.+ ..+.++++.|.++..+-.
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~---- 94 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-------HEKAAEDAELATVVDP-KYSKAWSRLGLARFDMAD---- 94 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccC----
Confidence 4678889999999999999999999999988776 4566666666666544 458999999999877642
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchH--HHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQ--VREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~q--a~~Al~~c~~el 354 (360)
+.+|+..|++||.++|+++. ...+|..|...+
T Consensus 95 --------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 128 (164)
T 3sz7_A 95 --------YKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128 (164)
T ss_dssp --------HHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 67899999999999999998 677777776544
No 57
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.67 E-value=2.7e-06 Score=71.24 Aligned_cols=181 Identities=14% Similarity=0.078 Sum_probs=112.1
Q ss_pred hhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 036322 124 DLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ 203 (360)
Q Consensus 124 ~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~ 203 (360)
.++..|...+..|+ +.+|..+|.+++..+|.++.++.++|.+|...|....-+. .++.++.-. |...
T Consensus 5 ~~~~~~~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~-~~~~--- 71 (359)
T 3ieg_A 5 KHLELGKKLLAAGQ--------LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP-DLTKVIALK-MDFT--- 71 (359)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHC-TTCH---
T ss_pred HHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhC-CCcc---
Confidence 34455555544433 4578888999999999999999999999999988764332 233333322 2211
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCC---CchhhHHhHH------------Hhhhcccc
Q 036322 204 KRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDG---NDVRALYNWG------------LALFFLET 268 (360)
Q Consensus 204 ~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp---~d~~ALYNWG------------lAL~~~~~ 268 (360)
.+. ..++..+... .-+.+|.+.|..+++++| ++..++++.| ..+...+.
T Consensus 72 -~~~----------~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 72 -AAR----------LQRGHLLLKQ-----GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp -HHH----------HHHHHHHHHH-----TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -hHH----------HHHHHHHHHc-----CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 111 0112222211 225678889999999999 9999998885 33333555
Q ss_pred hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 269 AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 269 a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
..+ |++-|+.++...+ ..+.++++.|..+..... +.+|+..|++++.++|+++.+...+.
T Consensus 136 ~~~-------A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~la 195 (359)
T 3ieg_A 136 YTA-------AITFLDKILEVCV-WDAELRELRAECFIKEGE------------PRKAISDLKAASKLKSDNTEAFYKIS 195 (359)
T ss_dssp HHH-------HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHTTCSCCHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHhCC-CchHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 444 4444444444433 347788887777655432 44566677777777777777666665
Q ss_pred hhhhh
Q 036322 349 SCMSE 353 (360)
Q Consensus 349 ~c~~e 353 (360)
.|-..
T Consensus 196 ~~~~~ 200 (359)
T 3ieg_A 196 TLYYQ 200 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 58
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.65 E-value=3.1e-08 Score=93.62 Aligned_cols=132 Identities=16% Similarity=0.200 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
+|...|..+++.+|....++.++||+|...|..
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~----------------------------------------------- 284 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKY----------------------------------------------- 284 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCH-----------------------------------------------
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCH-----------------------------------------------
Confidence 455566777788888888888888888764332
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCc---------------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC
Q 036322 228 CEECEELLVKAGRKYRLALSIDGND---------------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI 292 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d---------------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~ 292 (360)
.+|.+.|..|++++|++ ..+++|.|.++...+. |.+|++-|+.++.+.+
T Consensus 285 --------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-------~~~A~~~~~~al~~~p- 348 (457)
T 1kt0_A 285 --------MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-------YTKAVECCDKALGLDS- 348 (457)
T ss_dssp --------HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHST-
T ss_pred --------HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhcCC-
Confidence 34555677777777776 6899999999888666 5667777777777644
Q ss_pred ChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 293 YAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 293 ~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
..+.|||+.|.++..+- -+.+|+..|++||.++|+++.+...|..|...+
T Consensus 349 ~~~~a~~~~g~a~~~~g------------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMN------------EFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45899999999987764 366799999999999999999999988887654
No 59
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.65 E-value=4e-06 Score=69.75 Aligned_cols=187 Identities=13% Similarity=0.054 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH-----------------------
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ----------------------- 203 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~----------------------- 203 (360)
.+|.+.|.+++++.|.+..++.++|.+|...|....-+. .++.++... |......
T Consensus 72 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA-SLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTS-TTTTTC--------------------CCTT
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 568889999999999999999999999998887764332 233333221 1111000
Q ss_pred -----HHHhhhhhhhhcchhHHHHHHHHhhHHH--HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHH
Q 036322 204 -----KRILKGLDYQFMNKDKIASLLVDACEEC--EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIF 276 (360)
Q Consensus 204 -----~r~~~~ld~~~~~k~~~~~aL~~~~eEa--EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~ 276 (360)
..+..-++.-+........++...+.-. ..-+.+|.+.|..+++.+|++..++++-|.++...+...+|...|
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111101000000000001111111111 122577888999999999999999999999998877755555555
Q ss_pred HHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCC------------chHHH
Q 036322 277 SAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD------------NLQVR 344 (360)
Q Consensus 277 ~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd------------~~qa~ 344 (360)
..+ +...+ ..+.++++.|..+...- -++.|+..|++++.++|+ ++.+.
T Consensus 230 ~~a-------~~~~~-~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 230 NRA-------LDINP-GYVRVMYNMAVSYSNMS------------QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp HHH-------HHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred HHH-------HHcCC-CCHHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 544 44433 35889999998876543 367788999999999999 78888
Q ss_pred HHHHhhhhhcc
Q 036322 345 EALSSCMSELN 355 (360)
Q Consensus 345 ~Al~~c~~el~ 355 (360)
..+..|-..+.
T Consensus 290 ~~l~~~~~~~g 300 (327)
T 3cv0_A 290 DFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 88887766554
No 60
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=2.9e-08 Score=82.01 Aligned_cols=99 Identities=18% Similarity=0.298 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
.+|..|+.+++++|++..++|+-|.++...|. |.+|++-|+.++.+ ++..|.++++.|.++..+-+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~-------~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~------ 85 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGR-------IEEAEVFFRFLCIY-DFYNVDYIMGLAAIYQIKEQ------ 85 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC------
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcc------
Confidence 36778999999999999999999999988777 45566666666665 34569999999999877653
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
+.+|+..|++|+.++|+++.+.--+..|-..+.
T Consensus 86 ------~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg 118 (151)
T 3gyz_A 86 ------FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK 118 (151)
T ss_dssp ------HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 778999999999999999999999888876654
No 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.63 E-value=7.5e-07 Score=67.56 Aligned_cols=158 Identities=15% Similarity=0.056 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+++...|.+..++.++|.+|...|....-+. -+..++... |.... +. ..++..+.
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~----~~----------~~~a~~~~ 87 (186)
T 3as5_A 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE-LLERSLADA-PDNVK----VA----------TVLGLTYV 87 (186)
T ss_dssp HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHH----HH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcC-CCCHH----HH----------HHHHHHHH
Confidence 3567888999999999999999999999999887764322 233333322 22111 10 01111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
. ..-+.+|.+.|..+++.+|++..++++.|.++...+...+|...|..++ ...+ ..+.++++.|..+
T Consensus 88 ~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~-~~~~~~~~la~~~ 154 (186)
T 3as5_A 88 Q-----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL-------GLRP-NEGKVHRAIAFSY 154 (186)
T ss_dssp H-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHH
T ss_pred H-----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH-------hcCc-cchHHHHHHHHHH
Confidence 1 1235677889999999999999999999999988777655555555554 4333 3589999999987
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
...- -+.+|...|+.++.++|+++...
T Consensus 155 ~~~~------------~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 155 EQMG------------RHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHTT------------CHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHcC------------CHHHHHHHHHHHHHcCCCchhhH
Confidence 6543 36789999999999999987543
No 62
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.58 E-value=1.9e-06 Score=69.74 Aligned_cols=178 Identities=13% Similarity=0.051 Sum_probs=118.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHcC-cCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc------CCCcchHHHHHHhh
Q 036322 136 GWDEERAEMILHKSARLLSQAIAMQ-HMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE------GDVISVEEQKRILK 208 (360)
Q Consensus 136 ~~De~~Ad~lL~~Aa~~~s~Al~~~-P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~------~~p~s~~~~~r~~~ 208 (360)
..+...|..++.+|.+++.+.+..+ |....++.++|++|...|....-+.- ++.++.- .++ +....+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~---~~~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL-LNDALAIREKTLGKDH---PAVAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHTCTTC---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHHHcCCcc---hHHHHHHH
Confidence 3456677888889999998888765 88999999999999999887654322 2222211 111 11111211
Q ss_pred hhhhhhcchhHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHH
Q 036322 209 GLDYQFMNKDKIASLLVDA--CEECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDA 285 (360)
Q Consensus 209 ~ld~~~~~k~~~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~A 285 (360)
.++..+... -++|.+++..|.+.+...... +|....+++|.|.++...+.-.+|..+|.+|++.++.
T Consensus 90 ----------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 90 ----------NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp ----------HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223333322 356666666666655555444 4888999999999999999999999999999998876
Q ss_pred HHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q 036322 286 MMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQD 332 (360)
Q Consensus 286 Al~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ 332 (360)
.....++..+.++++.|..+...-. ..++.++++++...+..
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGK-----YQDAETLYKEILTRAHE 201 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHH
Confidence 5442233446889999988876643 45666666666665433
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.58 E-value=5e-06 Score=65.56 Aligned_cols=154 Identities=14% Similarity=0.197 Sum_probs=105.5
Q ss_pred cCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHH
Q 036322 161 HMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGR 240 (360)
Q Consensus 161 P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgr 240 (360)
.++..++.++|++|...|....-+.. ++.++.-. |.... +.. .++.++... .-+..|..
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~-~~~al~~~-p~~~~----~~~----------~la~~~~~~-----~~~~~a~~ 60 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRA-YKKVLKAD-PNNVE----TLL----------KLGKTYMDI-----GLPNDAIE 60 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHC-TTCHH----HHH----------HHHHHHHHT-----TCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhC-CCCHH----HHH----------HHHHHHHHC-----CCHHHHHH
Confidence 35778999999999999988765432 33334332 32211 111 112222211 12456777
Q ss_pred HHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHH
Q 036322 241 KYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKV 320 (360)
Q Consensus 241 KY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~ 320 (360)
.|..++..+|+...++++.|......+.... |.+-|..++.+.+ ..++++++.|.++...-
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g----------- 121 (184)
T 3vtx_A 61 SLKKFVVLDTTSAEAYYILGSANFMIDEKQA-------AIDALQRAIALNT-VYADAYYKLGLVYDSMG----------- 121 (184)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH-------HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCc-cchHHHHHHHHHHHHhC-----------
Confidence 8899999999999999999998887666444 4444555555433 45899999999987654
Q ss_pred HHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 321 KLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 321 ~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|++++.++|+++.+...|..|-..++
T Consensus 122 -~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 122 -EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp -CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 3678999999999999999999988888765543
No 64
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.57 E-value=1e-07 Score=82.85 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhhCCC-------chh-----hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH----
Q 036322 235 LVKAGRKYRLALSIDGN-------DVR-----ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL---- 298 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~-------d~~-----ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL---- 298 (360)
+.+|..+|+.||+++|+ ++. +++|=|.+|..-|.-.+|-.-|..|++-|..++.+.+ ..+.||
T Consensus 27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~ 105 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAV 105 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHH
Confidence 67889999999999999 676 9999999999999988888888888888888888644 568999
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
||-|.||..+-+ +..|+..|++||.++|++.-+..-|..
T Consensus 106 ~~rG~aL~~lgr------------~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 106 YSRALALDGLGR------------GAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred HhHHHHHHHCCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999987763 668899999999999999866544443
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.57 E-value=1.5e-06 Score=71.04 Aligned_cols=153 Identities=12% Similarity=0.005 Sum_probs=102.0
Q ss_pred CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHH
Q 036322 160 QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAG 239 (360)
Q Consensus 160 ~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAg 239 (360)
.|.++.++.+.|++|...|....-+. .+..++.-.++..... .- .++.+.. ...-+.+|.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~----~~----------~~~~~~~-----~~~~~~~A~ 62 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFE-KYSEYLKLTNNQDSVT----AY----------NCGVCAD-----NIKKYKEAA 62 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTTTCCHHH----HH----------HHHHHHH-----HTTCHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHH-HHHHHHhccCCCCcHH----HH----------HHHHHHH-----HhhcHHHHH
Confidence 36778999999999999888775433 2334443332122110 00 0111111 112356778
Q ss_pred HHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh-------HHHhhHHHHHHHhhhcC
Q 036322 240 RKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP-------DALFGWAVALQQRSRLR 312 (360)
Q Consensus 240 rKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap-------~AL~NWGlALqerA~lr 312 (360)
+.|..|++++|++..++++-|.++...+...+|.. -|+.++.+.+ ..| .++++-|..+...
T Consensus 63 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~---- 130 (228)
T 4i17_A 63 DYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIA-------TLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQA---- 130 (228)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHH-------HHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHh----
Confidence 88999999999999999999999988777555544 4454455433 346 5577777765432
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCC--chHHHHHHHhhhh
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSD--NLQVREALSSCMS 352 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd--~~qa~~Al~~c~~ 352 (360)
.-+.+|+..|++||.++|+ ++.+...|..|-.
T Consensus 131 --------~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 131 --------GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp --------TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 3478899999999999999 9999888877753
No 66
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.56 E-value=1.3e-06 Score=71.47 Aligned_cols=163 Identities=13% Similarity=0.014 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHc----CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHH
Q 036322 146 LHKSARLLSQAIAM----QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 146 L~~Aa~~~s~Al~~----~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~ 221 (360)
+.+|.+.|.++++. +|.+..++.++|.+|...|....-+. -++.++.-. |.... +.. .++
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~-~~~~~----~~~----------~la 84 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN-DFSQALAIR-PDMPE----VFN----------YLG 84 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-CCCHH----HHH----------HHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHH-HHHHHHHcC-CCcHH----HHH----------HHH
Confidence 56677788888876 46777888888888888777664322 223333222 22111 100 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 222 SLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 222 ~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
..+.. ..-+.+|.+-|..|++++|++..++++.|.++...|...+|...| +.++.+.+. .+.++..-
T Consensus 85 ~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~a~~~~~~-~~~~~~~~ 151 (275)
T 1xnf_A 85 IYLTQ-----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL-------LAFYQDDPN-DPFRSLWL 151 (275)
T ss_dssp HHHHH-----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH-------HHHHHHCTT-CHHHHHHH
T ss_pred HHHHH-----ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHH-------HHHHHhCCC-ChHHHHHH
Confidence 11111 123567788999999999999999999999998877755555444 444444332 34444333
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
++.+ ...-+..|+..|+.++...|+++....-+..+
T Consensus 152 ~~~~-------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 1xnf_A 152 YLAE-------------QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187 (275)
T ss_dssp HHHH-------------HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHH
T ss_pred HHHH-------------HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3321 12346788899999999999987766544433
No 67
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.56 E-value=3.4e-07 Score=72.06 Aligned_cols=100 Identities=17% Similarity=0.112 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhh------------------CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhH
Q 036322 235 LVKAGRKYRLALSI------------------DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPD 296 (360)
Q Consensus 235 L~eAgrKY~~Al~~------------------dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~ 296 (360)
+.+|.+.|..|+++ +|....+++|-|.++...+. |.+|++-|+.++.+.+ ..+.
T Consensus 27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~ 98 (162)
T 3rkv_A 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-------LHEAEETSSEVLKREE-TNEK 98 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHST-TCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcCC-cchH
Confidence 56788899999998 88888999999999887665 5677777777777644 4589
Q ss_pred HHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch-HHHHHHHhhhhhc
Q 036322 297 ALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL-QVREALSSCMSEL 354 (360)
Q Consensus 297 AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~-qa~~Al~~c~~el 354 (360)
+|++-|.++..+- -+..|+..|+.||.++|+++ .+...|..|...+
T Consensus 99 a~~~~g~~~~~~g------------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 99 ALFRRAKARIAAW------------KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999987765 36789999999999999999 7788888887654
No 68
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1.8e-06 Score=75.76 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+..|.+|++++|.++.+++|+|.+|...|+.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--------------------------------------------- 54 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP--------------------------------------------- 54 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH---------------------------------------------
Confidence 45688899999999999999999999888754322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
.+|.+.|..|++++|++..++|+-|.++...|.-.+|.+.|..|++..-. .|.++..+...+
T Consensus 55 ----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------~~~~~~~~~~~~ 116 (281)
T 2c2l_A 55 ----------EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE--------QRLNFGDDIPSA 116 (281)
T ss_dssp ----------HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTCCCCSHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------chhhHHHHHHHH
Confidence 33445788888889999999999998888888777777777666654321 011111111111
Q ss_pred HHhh----------hcCCCChHH-------HHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 306 QQRS----------RLRPRNSKE-------KVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 306 qerA----------~lr~~sskE-------k~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
..++ ...+....- ...-..+|+..|+.|+.++|++...+..|....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 117 LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179 (281)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHHHHHH
Confidence 1000 011110100 123457888999999999999988877765443
No 69
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=4.5e-06 Score=63.35 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=83.5
Q ss_pred HHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCC
Q 036322 118 YLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDV 197 (360)
Q Consensus 118 ~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p 197 (360)
.+..+..+...|...+..++ +..|...|.+++++.|.++.++.++|.+|...|.
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~------------------ 62 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKD--------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC------------------ 62 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC------------------
Confidence 34455566666666655443 5677889999999999999999999977764321
Q ss_pred cchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHH
Q 036322 198 ISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFS 277 (360)
Q Consensus 198 ~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~ 277 (360)
+.+|.+.|..+++++|++..++++.|.++...+...+|...
T Consensus 63 -------------------------------------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-- 103 (166)
T 1a17_A 63 -------------------------------------YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD-- 103 (166)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH--
T ss_pred -------------------------------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHH--
Confidence 13445578888899999999999999998887775555444
Q ss_pred HHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 278 AAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 278 aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
|+.++.+.+ ..+.++.+++.+..
T Consensus 104 -----~~~a~~~~p-~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 104 -----YETVVKVKP-HDKDAKMKYQECNK 126 (166)
T ss_dssp -----HHHHHHHST-TCHHHHHHHHHHHH
T ss_pred -----HHHHHHhCC-CCHHHHHHHHHHHH
Confidence 444455433 34788877777643
No 70
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.55 E-value=3.3e-06 Score=63.35 Aligned_cols=120 Identities=15% Similarity=-0.015 Sum_probs=83.3
Q ss_pred HhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH
Q 036322 122 ANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE 201 (360)
Q Consensus 122 a~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~ 201 (360)
+..+...|..++..++ +.+|+..|.+|++++|.++.++.++|.+|...|+.
T Consensus 4 a~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--------------------- 54 (126)
T 3upv_A 4 AEEARLEGKEYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF--------------------- 54 (126)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH---------------------
Confidence 3344455555544443 45788999999999999999999999888753221
Q ss_pred HHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH
Q 036322 202 EQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID 281 (360)
Q Consensus 202 ~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d 281 (360)
.+|.+-|..|++++|++..++++.|.++...+.-.+|...|..|++
T Consensus 55 ----------------------------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 55 ----------------------------------PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp ----------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3455688899999999999999999999998886666666655555
Q ss_pred HHHHHHhccCCChhHHHhhHHHHHH
Q 036322 282 NFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 282 KY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
..-.-.. .+..++++...+.+.+
T Consensus 101 ~~p~~~~--~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 101 KDAEVNN--GSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHT--TTTHHHHHHHHHHHHH
T ss_pred hCcccCC--chhHHHHHHHHHHHHH
Confidence 4421111 1244666666665544
No 71
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=8.4e-07 Score=66.31 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.+|...|..+++++|++..+++|-|.++...+.-. .|++-|+.++.+.+ ..+.++++.|.++..+..
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~-------~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~----- 92 (137)
T 3q49_B 26 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE-------QALADCRRALELDG-QSVKAHFFLGQCQLEMES----- 92 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHhCc-hhHHHHHHHHHHHHHHhh-----
Confidence 45666899999999999999999999998877644 45555555555433 468999999999877642
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCC-----chHHHHHHHhhhhh
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSD-----NLQVREALSSCMSE 353 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd-----~~qa~~Al~~c~~e 353 (360)
+.+|+..|+.|+.++|+ ++.+...|..|...
T Consensus 93 -------~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 93 -------YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999 88999988888653
No 72
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.55 E-value=3.9e-06 Score=68.41 Aligned_cols=163 Identities=9% Similarity=0.054 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE-GDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~-~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
+.+|.+.|.+++++.|.+..++.++|.+|...|....-+. -++.++.. ..|.. ..+.. .++..+
T Consensus 87 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~----~~~~~----------~la~~~ 151 (252)
T 2ho1_A 87 PKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ-RLLEASQDTLYPER----SRVFE----------NLGLVS 151 (252)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTCTTCTTH----HHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhCccCccc----HHHHH----------HHHHHH
Confidence 3578889999999999999999999999999887764322 23444441 11211 11111 112222
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
... .-+.+|.+.|..+++.+|++..++++.|.++...+...+|..+|.. ++...+ ..+.+++..|..
T Consensus 152 ~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------~~~~~~-~~~~~~~~~~~~ 218 (252)
T 2ho1_A 152 LQM-----KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL-------FAQGGG-QNARSLLLGIRL 218 (252)
T ss_dssp HHT-----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHTTSC-CCHHHHHHHHHH
T ss_pred HHc-----CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHhCc-CcHHHHHHHHHH
Confidence 211 1245677788889999999999999999998887775555555554 444433 457888877777
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 305 LQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 305 LqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
+.... -.++|...|+.++.++|+++.+...+.
T Consensus 219 ~~~~g------------~~~~A~~~~~~~~~~~p~~~~~~~~l~ 250 (252)
T 2ho1_A 219 AKVFE------------DRDTAASYGLQLKRLYPGSLEYQEFQA 250 (252)
T ss_dssp HHHTT------------CHHHHHHHHHHHHHHCTTSHHHHHHHT
T ss_pred HHHcc------------CHHHHHHHHHHHHHHCCCCHHHHHHHh
Confidence 65432 345788899999999999999887653
No 73
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.55 E-value=5.8e-06 Score=74.47 Aligned_cols=182 Identities=13% Similarity=0.034 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.|.+.|.+++.+.|.++.++.++|++|...|....-+. .++.++.-. |..... . -.++..+...
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~-~~~~~~----~----------~~la~~~~~~ 357 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE-DFQKAQSLN-PENVYP----Y----------IQLACLLYKQ 357 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCSHH----H----------HHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhC-CCCHHH----H----------HHHHHHHHHc
Confidence 45566666666666666666666666666655443221 122222211 111000 0 0111111111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
.-+.+|...|..+++.+|++..++++.|.++...+.-.+|...|..|++....-.. ....-..+++.|..+..
T Consensus 358 -----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 358 -----GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILAR 430 (537)
T ss_dssp -----TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHH
Confidence 22456777888888899999999999999998888877788888777776532111 11122335555555544
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
.....+. --...-+.+|+..|++++.++|+++.+...|..|-..+
T Consensus 431 ~~~~~~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 431 QSSQDPT--QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHTC------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred Hhhccch--hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 3110000 00013567777778888888888877777776665443
No 74
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.54 E-value=9.5e-07 Score=83.64 Aligned_cols=128 Identities=13% Similarity=-0.049 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+|++++|.+..++.++|.+|...|+...-+. .++.++.-. |.... +. ..++.++.
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~-p~~~~----~~----------~~la~~~~ 102 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV-LLQQASDAA-PEHPG----IA----------LWLGHALE 102 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHH----HH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcC-CCCHH----HH----------HHHHHHHH
Confidence 4578899999999999999999999999999888765432 233344332 22211 11 11222222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc---cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL---ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~---~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
.. .-+.+|.+.|..|++++|++..+++|.|.++... +... +|.+-|++++...+ ...++++..+
T Consensus 103 ~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~-------~A~~~~~~al~~~p-~~~~~~~~l~ 169 (568)
T 2vsy_A 103 DA-----GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD-------VLSAQVRAAVAQGV-GAVEPFAFLS 169 (568)
T ss_dssp HT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHH-------HHHHHHHHHHHHTC-CCSCHHHHTT
T ss_pred Hc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHH-------HHHHHHHHHHhcCC-cccChHHHhC
Confidence 21 2256778899999999999999999999999886 6644 45555555555433 3355665444
No 75
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=3e-07 Score=71.65 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|..||+++|++..+++|-|.++..-+.-.+|...|..|++-...... .......+|++.|.++..+
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~------ 96 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA-DYKLIAKAMSRAGNAFQKQ------ 96 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHHc------
Confidence 467888999999999999999999999999888755555555554443221000 0001125777777775543
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
.-+.+|+..|++||.++|| |+.+..|..|
T Consensus 97 ------~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 97 ------NDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp ------TCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 3478899999999999985 7788777765
No 76
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=1.9e-06 Score=61.13 Aligned_cols=97 Identities=19% Similarity=0.113 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..++..+|++..++++.|.++...+.- .+|++-|+.++...+ ..+.++++.|.++....
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~----- 86 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-------QKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLN----- 86 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH-------HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHh-----
Confidence 46677789999999999999999999998876664 445555555555433 45899999999987654
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-+.+|+..|+.++.++|+++.+...+..|.
T Consensus 87 -------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 87 -------RFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp -------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 267789999999999999999998887764
No 77
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.52 E-value=4.5e-06 Score=68.22 Aligned_cols=164 Identities=14% Similarity=-0.012 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+|+++.|.++.++.++|.+|...|....-+. -++.++.-. |.....+. .++.++..
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~-~~~~~~~~--------------~la~~~~~ 123 (275)
T 1xnf_A 60 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE-AFDSVLELD-PTYNYAHL--------------NRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCTHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH-HHHHHHhcC-ccccHHHH--------------HHHHHHHH
Confidence 467788888888888888888888888888777664332 233333322 21110000 11111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHH--------------------------HHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIF--------------------------SAAI 280 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~--------------------------~aA~ 280 (360)
. .-+.+|.+.|..+++++|++..++..-++.+ ..+...+|...| .+|+
T Consensus 124 ~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 124 G-----GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE-QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 197 (275)
T ss_dssp T-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHH
T ss_pred h-----ccHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHH
Confidence 1 1133444455555555555553333222221 123333344444 3345
Q ss_pred HHHHHHHhccCC---ChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 281 DNFDAMMLKGNI---YAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 281 dKY~AAl~~~n~---~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
+.|..++...+. ..+.++++.|..+...- -++.|+..|++|+.++|++....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLG------------DLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhCCchhHHHH
Confidence 555555443221 11578888888865543 36678999999999999876543
No 78
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.52 E-value=4.3e-06 Score=66.94 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHH-----hc---cCCChhHHHhhHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMM-----LK---GNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl-----~~---~n~~ap~AL~NWGlALqe 307 (360)
.+|.+.|..|++++|++..+++|-|.++...+.-.+|...|..|++.+..-. .. .....+.++++.|.++..
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 4566688899999999999999999999888876555555555554321000 00 011235999999999876
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhh
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN--LQVREALSSC 350 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c 350 (360)
+- -+..|+..|+.|+.++|++ .....|+...
T Consensus 134 ~g------------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 134 KE------------EWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp TT------------CHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred cc------------CHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 54 3577899999999999966 4455555544
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.52 E-value=1e-06 Score=87.59 Aligned_cols=169 Identities=15% Similarity=0.033 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+|++++|.+..+++++|++|+..|+...-+. .++.++.-. |.....+ ..++.++.
T Consensus 449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~-P~~~~~~--------------~~lg~~~~ 512 (681)
T 2pzi_A 449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATK-HFTEVLDTF-PGELAPK--------------LALAATAE 512 (681)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHS-TTCSHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCChHHH--------------HHHHHHHH
Confidence 3578999999999999999999999999999988775433 234444332 2211110 11122221
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
..+ -+.+ .+.|+.|++++|++..|++|-|.++...|. +.+|++-|++++.+.+ ..++|++|.|.++
T Consensus 513 ~~g-----~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~P-~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 513 LAG-----NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD-------RVGAVRTLDEVPPTSR-HFTTARLTSAVTL 578 (681)
T ss_dssp HHT-----CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHTSCTTST-THHHHHHHHHHHT
T ss_pred HcC-----ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC-------HHHHHHHHHhhcccCc-ccHHHHHHHHHHH
Confidence 111 1223 447999999999999999999999988776 4677777887777644 5689999999997
Q ss_pred HHhhhcCCCChHHH-HHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 306 QQRSRLRPRNSKEK-VKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 306 qerA~lr~~sskEk-~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
.. .+...+. ..-+.+|.+.++.....+|+..+.+..|..
T Consensus 579 ~~-----~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~ 618 (681)
T 2pzi_A 579 LS-----GRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLG 618 (681)
T ss_dssp C------------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred Hc-----cCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 32 1211122 457888888888776666666665555443
No 80
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=2.6e-06 Score=67.11 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+++|.+|++++|.++.++.++|.+|+..|+.
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--------------------------------------------- 61 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH--------------------------------------------- 61 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH---------------------------------------------
Confidence 45788999999999999999999999888753222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
.+|...|..|++++|++..++++.|.++...+.-. +|++-|+.++.+.+ ..+.++++-|++
T Consensus 62 ----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~p-~~~~~~~~~~l~ 122 (164)
T 3sz7_A 62 ----------EKAAEDAELATVVDPKYSKAWSRLGLARFDMADYK-------GAKEAYEKGIEAEG-NGGSDAMKRGLE 122 (164)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 34555788899999999999999999998877744 44555555555433 346788887776
No 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.6e-06 Score=74.86 Aligned_cols=181 Identities=10% Similarity=0.051 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHH----
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKI---- 220 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~---- 220 (360)
.|.+.|.+++.+.|.+..++.++|.+|...|....-+. .++.++.-. |... ...+.+...... .....++
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~ 364 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK-DFDKAKELD-PENIFPYIQLACLAYRENK-FDDCETLFSEA 364 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH-HHHHHHHTC-SSCSHHHHHHHHHTTTTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhC-hhhHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 67777777777777777777777777777766543322 222222221 2111 111222111100 0000000
Q ss_pred -------HHHHHHhh--HHHHHHHHHHHHHHHHHhhhCCCchh------hHHhHHHhhhc---ccchhcHHHHHHHHHHH
Q 036322 221 -------ASLLVDAC--EECEELLVKAGRKYRLALSIDGNDVR------ALYNWGLALFF---LETAFDADKIFSAAIDN 282 (360)
Q Consensus 221 -------~~aL~~~~--eEaEeLL~eAgrKY~~Al~~dp~d~~------ALYNWGlAL~~---~~~a~eAe~L~~aA~dK 282 (360)
..++...+ -....-+.+|.+.|..+++++|++.. ++++-|.++.. .|...+| ++-
T Consensus 365 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A-------~~~ 437 (514)
T 2gw1_A 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA-------TNL 437 (514)
T ss_dssp HHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH-------HHH
T ss_pred HHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH-------HHH
Confidence 00010000 00112346677788888888888865 88888888877 6665444 444
Q ss_pred HHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 283 FDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 283 Y~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
|+.++...+ ..+.++++.|..+...- -+..|+..|++|+.++|+++++..++.-+.
T Consensus 438 ~~~a~~~~~-~~~~~~~~la~~~~~~g------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 438 LEKASKLDP-RSEQAKIGLAQMKLQQE------------DIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHhCc-ccHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 555555433 45899999998876543 356789999999999999999999876543
No 82
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.48 E-value=1.1e-06 Score=68.10 Aligned_cols=88 Identities=15% Similarity=-0.006 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|+.|++++|++..++++-|.++...|. +.+|+.-|+.++.+.+ ..++++++.|.++...-
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g----- 99 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-------DGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH----- 99 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC-----
Confidence 4677889999999999999999999999998776 4566666777777644 45899999999976544
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
-+.+|+..|+++|+++|+++.
T Consensus 100 -------~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 100 -------NANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp -------HHHHHHHHHHHHHC-------
T ss_pred -------CHHHHHHHHHHHHHhCcCCCC
Confidence 467899999999999999865
No 83
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.47 E-value=8.6e-06 Score=64.07 Aligned_cols=165 Identities=12% Similarity=-0.031 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHH-HHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVR-EELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~-GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
+.+|.+.|.+++.+.|.+..++.++|.+|... |....-+. .+..++.....+. ...+.. .++..+
T Consensus 58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~-~~~~~~~~~~~~~---~~~~~~----------~l~~~~ 123 (225)
T 2vq2_A 58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA-YFDKALADPTYPT---PYIANL----------NKGICS 123 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHH-HHHHHHTSTTCSC---HHHHHH----------HHHHHH
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHH-HHHHHHcCcCCcc---hHHHHH----------HHHHHH
Confidence 35688899999999999999999999999988 77664322 2344444111111 011111 111122
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
... .-+.+|-+.|..+++.+|++..++++.|.++...+...+|..+|..+++ ..+...+.+++..+..
T Consensus 124 ~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~ 191 (225)
T 2vq2_A 124 AKQ-----GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS-------RVEVLQADDLLLGWKI 191 (225)
T ss_dssp HHT-----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HHCSCCHHHHHHHHHH
T ss_pred HHc-----CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHH
Confidence 111 2245677788888999999999999999999887776666666665554 3231346776544444
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 305 LQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 305 LqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
+... + -.+.|...++.++.++|+++.+...|.
T Consensus 192 ~~~~-----~-------~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 192 AKAL-----G-------NAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHT-----T-------CHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHhc-----C-------cHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 3222 1 235577788888889999999988764
No 84
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.46 E-value=3e-07 Score=73.65 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
.+|..|+.+++++|++..++|+-|.++...|. |.+|+.-|+.++.+.+ ..|.++++-|.++...-
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g------- 69 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-------YEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMG------- 69 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-------
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHh-------
Confidence 34667999999999999999999999998777 4555666666666544 46999999999987654
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+..|+..|+.||.++|+++.+.--+..|-..+.
T Consensus 70 -----~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 70 -----QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp -----CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 3678999999999999999999988888765543
No 85
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=3.2e-06 Score=60.74 Aligned_cols=101 Identities=18% Similarity=0.096 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+..|...|..++..+|++..++++.|.++...+.-.+|...|.. ++...+ ..+.++++.|..+...-
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~----- 94 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER-------AICIDP-AYSKAYGRMGLALSSLN----- 94 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHH-------HHhcCc-cCHHHHHHHHHHHHHhC-----
Confidence 45677788999999999999999999999887775555555444 444433 45899999999877653
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+..|+..|++++.++|+++.+...+..|...+.
T Consensus 95 -------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 95 -------KHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp -------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 3678899999999999999999999888876654
No 86
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.46 E-value=4.2e-07 Score=82.42 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 036322 112 DVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRL 191 (360)
Q Consensus 112 ~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~l 191 (360)
+..++..+..+..+...|..+.+.++ +.+|+.+|.+|+.+.|.+.. ...+ |..+... ..++
T Consensus 169 ~~~~~~~~~~a~~~~~~g~~~~~~g~--------~~~A~~~y~~Al~~~p~~~~-~~~~-------~~~~~~~-~~l~-- 229 (338)
T 2if4_A 169 DMTVEERIGAADRRKMDGNSLFKEEK--------LEEAMQQYEMAIAYMGDDFM-FQLY-------GKYQDMA-LAVK-- 229 (338)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTCSSSC--------CHHHHHHHHHHHHHSCHHHH-HTCC-------HHHHHHH-HHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHhccchh-hhhc-------ccHHHHH-HHHH--
Confidence 34456677778888888888876665 35678899999999998762 1111 1111110 0000
Q ss_pred hccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhc
Q 036322 192 LLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFD 271 (360)
Q Consensus 192 la~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~e 271 (360)
. + ... +++.++... .-+.+|...|..|++++|++.+||||.|.++...+.
T Consensus 230 -~---~-~~~-----------------nla~~~~~~-----g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~--- 279 (338)
T 2if4_A 230 -N---P-CHL-----------------NIAACLIKL-----KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ--- 279 (338)
T ss_dssp -T---H-HHH-----------------HHHHHHHTT-----TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---
T ss_pred -H---H-HHH-----------------HHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---
Confidence 0 0 000 111111111 113567778999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 272 ADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 272 Ae~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
|.+|++-|++++.+.+ ..+.++++.+..... .....+.+...|+.+|.++|+++..+
T Consensus 280 ----~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~-----------~~~~~~~a~~~~~~~l~~~p~~~~~~ 336 (338)
T 2if4_A 280 ----MDSARDDFRKAQKYAP-DDKAIRRELRALAEQ-----------EKALYQKQKEMYKGIFKGKDEGGAKS 336 (338)
T ss_dssp ----HHHHHHHHHHTTC--------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 4556666666666533 457787776644221 22345677889999999999988643
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.45 E-value=2.1e-06 Score=65.05 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|...|.+++++.|.+..++.++|.+|...|....-+. -+..++... |... .+. ..++..+.
T Consensus 58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~-~~~~----~~~----------~~~a~~~~ 121 (186)
T 3as5_A 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP-LLIKVAEAN-PINF----NVR----------FRLGVALD 121 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHC-TTCH----HHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhcC-cHhH----HHH----------HHHHHHHH
Confidence 3567888999999999999999999999999887764322 233333322 2211 111 01122222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
.. .-+.+|.+.|..+++.+|++..++++.|.++...+...+|...|..+++..
T Consensus 122 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 122 NL-----GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hc-----CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 11 225678889999999999999999999999988888777777777776654
No 88
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=4.9e-06 Score=67.48 Aligned_cols=128 Identities=18% Similarity=0.193 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCCh----------------HHHhhhhhhHHHH
Q 036322 114 MFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSL----------------LAVDQLGNTYLVR 177 (360)
Q Consensus 114 ~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~----------------~Avgn~GNalL~~ 177 (360)
..+..+..+..+...|..++..++ +.+|.++|.+|+++.|.++ .++.++|.+|+..
T Consensus 30 ~~~~~~~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 30 TDEEKVQSAFDIKEEGNEFFKKNE--------INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777888877766554 4578889999999999887 5555555554432
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHH
Q 036322 178 EELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALY 257 (360)
Q Consensus 178 GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALY 257 (360)
|. +.+|...|..|++++|++..++|
T Consensus 102 ~~-------------------------------------------------------~~~A~~~~~~al~~~p~~~~~~~ 126 (198)
T 2fbn_A 102 KD-------------------------------------------------------YPKAIDHASKVLKIDKNNVKALY 126 (198)
T ss_dssp TC-------------------------------------------------------HHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cC-------------------------------------------------------HHHHHHHHHHHHHhCcccHHHHH
Confidence 11 24566678889999999999999
Q ss_pred hHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 258 NWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 258 NWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
+.|.++...+. |.+|++-|+.++.+.+ ..+.++.+.|..+..+.+..
T Consensus 127 ~lg~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 127 KLGVANMYFGF-------LEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHHHHHTC-------HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccc-------HHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHH
Confidence 99999987666 4556666666666544 45899999999988776543
No 89
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.45 E-value=2.1e-06 Score=62.60 Aligned_cols=100 Identities=20% Similarity=0.120 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..+++.+|++..++++-|.++...+.-.+|...|..|+ .+.+ ..+.++++.|.++....
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-------~~~~-~~~~~~~~la~~~~~~~----- 98 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI-------QLEP-TFIKGYTRKAAALEAMK----- 98 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-------HhCC-CchHHHHHHHHHHHHHh-----
Confidence 3567778999999999999999999999988777555555555444 4333 45899999999986653
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-+.+|+..|++++.++|+++.+...|..|...+
T Consensus 99 -------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 99 -------DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -------CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 367899999999999999999999988886543
No 90
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=8.4e-06 Score=73.69 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCcCC---------------hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhh
Q 036322 146 LHKSARLLSQAIAMQHMS---------------LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGL 210 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s---------------~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~l 210 (360)
+.+|+++|.+|++++|.+ ..++.|+|.+|+..|+
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~------------------------------- 211 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA------------------------------- 211 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-------------------------------
Confidence 567899999999999999 5777888877664321
Q ss_pred hhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 211 DYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 211 d~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
+.+|...|..|++++|++..++||.|.++...+. |.+|++-|++++.+.
T Consensus 212 ------------------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 212 ------------------------FSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-------FELARADFQKVLQLY 260 (336)
T ss_dssp ------------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC
T ss_pred ------------------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHC
Confidence 2456668999999999999999999999988776 455666666666654
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
+ ..+.++++.|.++..+.... +...++++....++.
T Consensus 261 P-~~~~a~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 261 P-NNKAAKTQLAVCQQRIRRQL----AREKKLYANMFERLA 296 (336)
T ss_dssp S-SCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 4 45899999999988776532 111335555544443
No 91
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=5.7e-07 Score=70.02 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChH
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSK 317 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ssk 317 (360)
+|.-|..++.++|++..++|+-|.++...+.- .+|++-|+.++.+.+ ..|.++++-|.++...-
T Consensus 3 ~~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~-------~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g-------- 66 (142)
T 2xcb_A 3 DGGTLAMLRGLSEDTLEQLYALGFNQYQAGKW-------DDAQKIFQALCMLDH-YDARYFLGLGACRQSLG-------- 66 (142)
T ss_dssp ------CCTTCCHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT--------
T ss_pred cchhHHHHHcCCHHHHHHHHHHHHHHHHHccH-------HHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHh--------
Confidence 56789999999999999999999999887774 455555566666534 46899999999987654
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 318 EKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 318 Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.|+.++|+++.+.--+..|-..+.
T Consensus 67 ----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 67 ----LYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100 (142)
T ss_dssp ----CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3678999999999999999999988888876554
No 92
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=2.7e-06 Score=69.05 Aligned_cols=101 Identities=22% Similarity=0.220 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhhhCCCch----------------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 234 LLVKAGRKYRLALSIDGNDV----------------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~----------------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
-+.+|.+.|..|++++|++. .+++|.|.++...+.- .+|++-|+.++.+.+ ..+.+
T Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p-~~~~~ 124 (198)
T 2fbn_A 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY-------PKAIDHASKVLKIDK-NNVKA 124 (198)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHST-TCHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHhCc-ccHHH
Confidence 35788889999999999988 8999999998877764 555555555555533 45899
Q ss_pred HhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 298 LFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 298 L~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+++.|.++..+- -+..|+..|++|+.++|+++.+...|..|...+
T Consensus 125 ~~~lg~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 125 LYKLGVANMYFG------------FLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHT------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc------------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 999999987654 367899999999999999999999999998665
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.42 E-value=1.2e-05 Score=57.37 Aligned_cols=119 Identities=22% Similarity=0.275 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+++...|.+..++.++|.++...|+
T Consensus 18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------------------------------------------- 50 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD----------------------------------------------- 50 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-----------------------------------------------
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC-----------------------------------------------
Confidence 456667777777778777777777765553221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
+.+|.+.|..++..+|++..++++.|..+...+...+|.++|.+++ ...+ ..+.++++.|..+.
T Consensus 51 --------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~-~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 51 --------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-------ELDP-RSAEAWYNLGNAYY 114 (136)
T ss_dssp --------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-------HhCC-CChHHHHHHHHHHH
Confidence 1334445667777889999999999988888777655555555544 3323 34788888888765
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
..- -+.+|...|++++.++|++
T Consensus 115 ~~~------------~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 115 KQG------------DYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTT------------CHHHHHHHHHHHHHHSTTC
T ss_pred HHc------------cHHHHHHHHHHHHccCCCC
Confidence 432 2567888888999888874
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.42 E-value=1.7e-06 Score=71.93 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHh----------------HHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYN----------------WGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYN----------------WGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
+.+|...|..+++++|++..++|+ -|.++...|. +.+|++-|+.++.+.| ..++++
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~~~ 91 (208)
T 3urz_A 20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN-------YDKAYLFYKELLQKAP-NNVDCL 91 (208)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHCC-CCHHHH
Confidence 467788899999999999999999 7777666665 4566666666666534 569999
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
++.|.++...- -+..|+..|++||.++|+++.+...|..|-
T Consensus 92 ~~lg~~~~~~g------------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 92 EACAEMQVCRG------------QEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999987654 367899999999999999999998877663
No 95
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=2.2e-06 Score=74.40 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=77.8
Q ss_pred HHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcC-------ChH-----HHhhhhhhHHHHHHHHHHHHH
Q 036322 119 LTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHM-------SLL-----AVDQLGNTYLVREELKLHFSC 186 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~-------s~~-----Avgn~GNalL~~GeLKl~~s~ 186 (360)
|.+|..++..|-...+.|+ +..|+.+|.+||+++|+ ++. ++.|+|.+|...|+..
T Consensus 8 ~~~a~~~~~~G~~l~~~g~--------~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~----- 74 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGE--------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD----- 74 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHH-----
T ss_pred HHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHH-----
Confidence 5567777777776655554 56799999999999999 555 8888887777544333
Q ss_pred HHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhH----HhHHHh
Q 036322 187 KLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRAL----YNWGLA 262 (360)
Q Consensus 187 ~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~AL----YNWGlA 262 (360)
||.+.+..|-+.|..+++++|++++|+ ||-|.|
T Consensus 75 -------------------------------------------eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~a 111 (159)
T 2hr2_A 75 -------------------------------------------EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALA 111 (159)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHH
Confidence 222223333334777777799999999 999999
Q ss_pred hhcccchhcHHHHHHHHHHHHHHHHhc
Q 036322 263 LFFLETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 263 L~~~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
|...+. |.+|++-|+.++.+
T Consensus 112 L~~lgr-------~eEAl~~y~kAlel 131 (159)
T 2hr2_A 112 LDGLGR-------GAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHTTC-------HHHHHHHHHHHHHH
T ss_pred HHHCCC-------HHHHHHHHHHHHhc
Confidence 998777 46667777777765
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.40 E-value=8.6e-06 Score=71.50 Aligned_cols=194 Identities=12% Similarity=0.033 Sum_probs=117.5
Q ss_pred HHHHHhhhhHHHHhhhhc-----CCchHHHHHHH-------------HHHHHHHHHHHHcCcCC------hHHHhhhhhh
Q 036322 118 YLTEANDLPKHAKECMKS-----GWDEERAEMIL-------------HKSARLLSQAIAMQHMS------LLAVDQLGNT 173 (360)
Q Consensus 118 ~v~ea~~Llk~are~~~~-----~~De~~Ad~lL-------------~~Aa~~~s~Al~~~P~s------~~Avgn~GNa 173 (360)
.+.+|.+++++|...+++ +.|...|-.++ .+|+.+|.+|+++.|.. ..++.|+|++
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 85 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMM 85 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456888888888876652 23444443332 35666778888886543 5688999999
Q ss_pred HHHHHHHHHHHHH---HHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCC
Q 036322 174 YLVREELKLHFSC---KLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDG 250 (360)
Q Consensus 174 lL~~GeLKl~~s~---~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp 250 (360)
|...|+...-+.. .|.. ....+.+ .....++. +++.+... .-+.+|..-|..|+++.|
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l-~~~~g~~--~~~a~~~~----------~lg~~~~~------g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVM-YVENGTP--DTAAMALD----------RAGKLMEP------LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHH-HHTTTCH--HHHHHHHH----------HHHHHHTT------TCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHH-HHHcCCH--HHHHHHHH----------HHHHHHHc------CCHHHHHHHHHHHHHHHH
Confidence 9987776544322 2211 1111100 00011111 12222211 225667778888888776
Q ss_pred Cc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHH
Q 036322 251 ND------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQ 324 (360)
Q Consensus 251 ~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~ 324 (360)
.. ..+++|.|.++...|.-.+|...|.+|++.+...-. ......++++.|+.+..+- -+.
T Consensus 147 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g------------~~~ 212 (307)
T 2ifu_A 147 NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRA------------DYV 212 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT------------CHH
T ss_pred hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcC------------CHH
Confidence 54 578999999999888888888888888877653211 0011346777777654332 257
Q ss_pred HHHHHHHHhhccCCCchHHHH
Q 036322 325 QARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 325 qA~~kye~ALrLdpd~~qa~~ 345 (360)
+|+..|++++ ++|+.+...+
T Consensus 213 ~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 213 AAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHT-TSTTSTTSHH
T ss_pred HHHHHHHHHh-CCCCCCCCHH
Confidence 8899999999 9998776543
No 97
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=4.8e-06 Score=62.02 Aligned_cols=98 Identities=22% Similarity=0.127 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|.+.|..+++++|++ ..++++.|.++...+.-. +|++-|+.++.+.+ ..+.++++.|.++..+-
T Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~-- 113 (148)
T 2dba_A 44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD-------KAETEASKAIEKDG-GDVKALYRRSQALEKLG-- 113 (148)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHH-------HHHHHHHHHHhhCc-cCHHHHHHHHHHHHHcC--
Confidence 467788999999999998 999999999988777644 44555555555433 34899999999987654
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
-+.+|+..|++++.++|+++.+...+..+..
T Consensus 114 ----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 114 ----------RLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp ----------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred ----------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 3677899999999999999999999887754
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.38 E-value=3.1e-06 Score=74.30 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHH---------------------------HHHHHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSA---------------------------AIDNFDAMML 288 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~a---------------------------A~dKY~AAl~ 288 (360)
.+|...|+.+++.+|++.+|+++-|.++...|...+|..+|.. |++.|++++.
T Consensus 134 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~ 213 (287)
T 3qou_A 134 TDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA 213 (287)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh
Confidence 4566688899999999999999999988876666666555544 5777888888
Q ss_pred ccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhhhhhcc
Q 036322 289 KGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN--LQVREALSSCMSELN 355 (360)
Q Consensus 289 ~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c~~el~ 355 (360)
. ++..++++++-|.+|...- -+.+|...|+++|+++|++ ++++..|..+-..+.
T Consensus 214 ~-~P~~~~~~~~la~~l~~~g------------~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 214 E-NPEDAALATQLALQLHQVG------------RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp H-CTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred c-CCccHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 6 4466999999999987654 3567899999999999999 889998888876654
No 99
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.38 E-value=2.2e-06 Score=65.10 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..+++++|++..++++.|.++...+.- .+|++-|+.++.+.+ ..+.+++++|.++...-
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~----- 95 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY-------GYALGDATRAIELDK-KYIKGYYRRAASNMALG----- 95 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhc-----
Confidence 56788899999999999999999999998887664 455555555555433 45899999999987654
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
-+.+|+..|++++.++|+++.+..-+..|..
T Consensus 96 -------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 96 -------KFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp -------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2667899999999999999998866666643
No 100
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.1e-05 Score=71.78 Aligned_cols=194 Identities=11% Similarity=-0.027 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcc---hHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVIS---VEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s---~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|.+.|.+++...|. ..++.++|.+|...|....-+. .++.++... |.. ....+.+...... .....+.-.
T Consensus 253 ~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~ 328 (514)
T 2gw1_A 253 PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYN-YFDKALKLD-SNNSSVYYHRGQMNFILQN-YDQAGKDFD 328 (514)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGG-HHHHHHTTC-TTCTHHHHHHHHHHHHTTC-TTHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHH-HHHHHhhcC-cCCHHHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 46899999999999999 9999999999999887654322 233333322 222 1122333222111 111111100
Q ss_pred HHHHh--------hHHHH-----HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc
Q 036322 223 LLVDA--------CEECE-----ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 223 aL~~~--------~eEaE-----eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
.++.. ...+. .-+.+|.+.|..+++.+|++..++++.|.++...|...+|...|..+++....-..
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 407 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG- 407 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS-
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch-
Confidence 00000 00000 22466777888888999999999999999988888777777777776655421000
Q ss_pred cCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 290 GNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 290 ~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
....+.++++.|..+..... ..-+.+|+..|+.++.++|+++.+...|..|-..+
T Consensus 408 -~~~~~~~~~~l~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 408 -IYVGIAPLVGKATLLTRNPT---------VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp -CSSCSHHHHHHHHHHHTSCC---------TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHhhhhh---------cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 00013488999988765210 12467899999999999999999998888876554
No 101
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.37 E-value=2.9e-05 Score=64.10 Aligned_cols=192 Identities=13% Similarity=0.022 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHH-cCcCChHHHhhhhhhHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIA-MQHMSLLAVDQLGNTYLVREELKLHFSCKLR 189 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~-~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr 189 (360)
+....+.+..-|.-+.++ .+...|..++.++.+++.+... -.|....++.++|++|...|+...-+.- ++
T Consensus 23 ~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~ 93 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQ--------GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL-LN 93 (311)
T ss_dssp SCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH-HH
T ss_pred chHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH-HH
Confidence 334456666666555542 2444555555555555544431 3688889999999999999887754321 12
Q ss_pred HHhcc------CCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHH
Q 036322 190 RLLLE------GDVISVEEQKRILKGLDYQFMNKDKIASLLVDA--CEECEELLVKAGRKYRLALSI-DGNDVRALYNWG 260 (360)
Q Consensus 190 ~lla~------~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWG 260 (360)
.++.- .+++ ....+.. .++..+... -++|.+.+..|.+.+...... .|....++++.|
T Consensus 94 ~al~~~~~~~~~~~~---~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 94 DALAIREKTLGKDHP---AVAATLN----------NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp HHHHHHHHHHCTTCH---HHHHHHH----------HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCh---HHHHHHH----------HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 22211 1111 1111111 122222222 355556555555555443222 367788999999
Q ss_pred HhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 036322 261 LALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRL 329 (360)
Q Consensus 261 lAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~k 329 (360)
.++...+.-.+|..+|..|++.++......+...+.++++.|..+...-. ..++.+.++++...
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-----FKQAETLYKEILTR 224 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHH
Confidence 99999999889999999999888754332233456788999988876643 45777777777764
No 102
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.37 E-value=5.3e-06 Score=65.21 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=83.9
Q ss_pred HHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc------------------CcCChHHHhhhhhhHHHHHHH
Q 036322 119 LTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM------------------QHMSLLAVDQLGNTYLVREEL 180 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~------------------~P~s~~Avgn~GNalL~~GeL 180 (360)
+..+..+..+|....+.++ +..|+..|.+|+.+ +|....++.|+|.+|+..|.
T Consensus 8 ~~~a~~~~~~G~~~~~~~~--------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~- 78 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKD--------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD- 78 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 4556666666666665554 45677888888888 77778888888887775322
Q ss_pred HHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHH
Q 036322 181 KLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWG 260 (360)
Q Consensus 181 Kl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWG 260 (360)
+.+|..-|..||+++|+..+|+|+-|
T Consensus 79 ------------------------------------------------------~~~A~~~~~~al~~~p~~~~a~~~~g 104 (162)
T 3rkv_A 79 ------------------------------------------------------LHEAEETSSEVLKREETNEKALFRRA 104 (162)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 23455578889999999999999999
Q ss_pred HhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh-HHHhhHHHHHHHhh
Q 036322 261 LALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP-DALFGWAVALQQRS 309 (360)
Q Consensus 261 lAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap-~AL~NWGlALqerA 309 (360)
.++...|. |.+|++-|+.++.+.|. .+ .+....+.....+.
T Consensus 105 ~~~~~~g~-------~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 105 KARIAAWK-------LDEAEEDLKLLLRNHPA-AASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHTTC-------HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-------HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH
Confidence 99988776 45667777777776443 34 44555555544433
No 103
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.36 E-value=1.3e-05 Score=73.66 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+-|..+++++|++..++++.|.++...|...+|.++|.++ +...+ ..+.++++-|.++...-
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~~~l~~~~~~~g----- 455 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA-------ARLFQ-GTHLPYLFLGMQHMQLG----- 455 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-------HHTTT-TCSHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCc-cchHHHHHHHHHHHHcC-----
Confidence 466777888888899999999999998888877755555555544 44333 34788888888875543
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
.+..|...|+.++.++|+++.+...+..|-..
T Consensus 456 -------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 456 -------NILLANEYLQSSYALFQYDPLLLNELGVVAFN 487 (597)
T ss_dssp -------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 46678888888888999999888777666544
No 104
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=6e-06 Score=61.03 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhhCCCch---hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDV---RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~---~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|.+.|..+++.+|++. .++|+-|.++...+.-.+|...|..+++.+- .+...|+++++.|.++....
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~la~~~~~~g-- 90 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-----THDKAAGGLLKLGLSQYGEG-- 90 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TSTTHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHcC--
Confidence 4667778889999999998 8999999988887775555555555544331 12233899999999987654
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-+.+|+..|+.++.+.|+++.+..|+..+.
T Consensus 91 ----------~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 91 ----------KNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp ----------CHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 267899999999999999999999877654
No 105
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.33 E-value=5.6e-06 Score=72.40 Aligned_cols=184 Identities=14% Similarity=0.057 Sum_probs=105.7
Q ss_pred HHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCCh----HHHhhhhhhHHHHHHHHHHHHHHHHHHhc--
Q 036322 120 TEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSL----LAVDQLGNTYLVREELKLHFSCKLRRLLL-- 193 (360)
Q Consensus 120 ~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~----~Avgn~GNalL~~GeLKl~~s~~Lr~lla-- 193 (360)
..+..|+..|...+..++ +..|..+|.+|+++.|.++ .++.++|.+|...|....-+.. ++.++.
T Consensus 46 ~~~~~l~~~g~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~ 116 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGD--------CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQY-HKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHH
Confidence 344455555555544443 4467888999999999998 5899999999998887654322 111111
Q ss_pred -cCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc--
Q 036322 194 -EGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA--CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLET-- 268 (360)
Q Consensus 194 -~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~-- 268 (360)
.... ......+.. .++..+... -++|.+.+..|.+.+... .-.|....++++.|..+...+.
T Consensus 117 ~~~~~--~~~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 117 KSMND--RLGEAKSSG----------NLGNTLKVMGRFDEAAICCERHLTLARQL-GDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHTTC--HHHHHHHHH----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccC--chHHHHHHH----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHcCccc
Confidence 1100 011111111 122222222 234444444443333321 1156778899999999988776
Q ss_pred --------hhcHHHHHHHHHHHHHHHHhcc-----CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 269 --------AFDADKIFSAAIDNFDAMMLKG-----NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 269 --------a~eAe~L~~aA~dKY~AAl~~~-----n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
..+|...|.+|++-|+.++.+. +...+.++++.|..+...-. -.++.+.+++|...+
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD-----FQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHH
Confidence 7778888888888888877642 11224688888887765432 344444444444443
No 106
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=1.3e-05 Score=58.31 Aligned_cols=119 Identities=9% Similarity=0.044 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRR 190 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ 190 (360)
.......+...|..+.++++ +..|.++|.++++++|.+..++.++|.+|...|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----------- 65 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGD---------------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE----------- 65 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTC---------------SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC-----------
T ss_pred CcccHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc-----------
Confidence 44446666666666555222 3467888999999999999999999977764221
Q ss_pred HhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchh
Q 036322 191 LLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAF 270 (360)
Q Consensus 191 lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~ 270 (360)
+.+|.+.|..++.++|++..++++.|.++...+.-.
T Consensus 66 --------------------------------------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 101 (133)
T 2lni_A 66 --------------------------------------------FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 101 (133)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred --------------------------------------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHH
Confidence 133445677888889999999999999988877654
Q ss_pred cHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 271 DADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 271 eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+|...|. .++...+ ..++++++.|..+..
T Consensus 102 ~A~~~~~-------~~~~~~p-~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 102 KAMDVYQ-------KALDLDS-SCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHH-------HHHHHCG-GGTHHHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHhCC-CchHHHHHHHHHHHH
Confidence 4444444 4444322 347888888887654
No 107
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.29 E-value=1.5e-05 Score=56.71 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
..|.+-|..++..+|++..++++.|.++...+...+|..+|..+++ +.+ ..+.++++.|..+....
T Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~-~~~~~~~~la~~~~~~~------ 91 (125)
T 1na0_A 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-------LDP-NNAEAWYNLGNAYYKQG------ 91 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCT-TCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCC-ccHHHHHHHHHHHHHhc------
Confidence 4556677888888999999999999998887776666666655554 323 35889999998876543
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
-+..|+..|+.++.++|+++.+...|..|..+
T Consensus 92 ------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 92 ------DYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp ------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 25778999999999999999999998877544
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.29 E-value=3.8e-06 Score=66.93 Aligned_cols=101 Identities=6% Similarity=0.010 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+..|...|..++..+|+...++|+-|......+. |.+|++-|+.++.+ ++..|+++++.|..+...-
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~-------~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~----- 79 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE-------YDLAKKYICTYINV-QERDPKAHRFLGLLYELEE----- 79 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC-------HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-----
Confidence 3567779999999999999999999888777666 56677777777776 4456999999999987654
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.||.++|+++.+..-|..|-.+++
T Consensus 80 -------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 80 -------NTDKAVECYRRSVELNPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred -------chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999888766554
No 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.29 E-value=1.4e-05 Score=75.48 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=90.3
Q ss_pred HHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCC---------------hHHHhhhhhhHHHHHHHHHHH
Q 036322 120 TEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMS---------------LLAVDQLGNTYLVREELKLHF 184 (360)
Q Consensus 120 ~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s---------------~~Avgn~GNalL~~GeLKl~~ 184 (360)
..+..+...|..+.+.++ +..|+++|.+|++++|.+ ..+++|+|.+|+..|+
T Consensus 266 ~~a~~~~~~G~~~~~~g~--------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----- 332 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGK--------YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE----- 332 (457)
T ss_dssp HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 334444455555444333 567899999999999998 5777777766664221
Q ss_pred HHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhh
Q 036322 185 SCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF 264 (360)
Q Consensus 185 s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~ 264 (360)
+.+|...|..|++++|+..+||||-|.++.
T Consensus 333 --------------------------------------------------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 333 --------------------------------------------------YTKAVECCDKALGLDSANEKGLYRRGEAQL 362 (457)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 245666889999999999999999999998
Q ss_pred cccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 265 FLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 265 ~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
..+. |.+|+.-|++++.+.+ ..+.++++.|.++..+.... ++.+ +...++|.++..+++.
T Consensus 363 ~~g~-------~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~-----~a~~--~~~~~~f~k~~~~d~~ 422 (457)
T 1kt0_A 363 LMNE-------FESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHN-----ERDR--RIYANMFKKFAEQDAK 422 (457)
T ss_dssp HTTC-------HHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH-----HHHH--HHHHHC----------
T ss_pred HccC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH-----HHHH--HHHHHHHhhhhhcccc
Confidence 8665 5667777777777644 55899999999988776532 2221 2333455555555543
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.27 E-value=6.5e-06 Score=76.97 Aligned_cols=179 Identities=15% Similarity=0.042 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHcCcCChHHHhhh-------hhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHh-hh----hhhhhc
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQL-------GNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRIL-KG----LDYQFM 215 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~-------GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~-~~----ld~~~~ 215 (360)
.|.+.|.+|++++|+..+|..++ |++|...++...-+-. ++..+.=. |... ..++. -| +.-++.
T Consensus 24 ~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~-~~~~l~l~-p~~l--~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 24 RSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQ-LSGSVQIS-MSTL--NARIAIGGLYGDITYPVT 99 (282)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTH-HHHTTTCC-GGGG--CCEEECCTTTCCCEEECS
T ss_pred HHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHH-HHHHhcCC-hhhh--hhhhccCCcccccccccC
Confidence 46679999999999999999999 8998876665433332 22222211 1100 01111 12 333334
Q ss_pred chhHH----HHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHH------------------
Q 036322 216 NKDKI----ASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDAD------------------ 273 (360)
Q Consensus 216 ~k~~~----~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe------------------ 273 (360)
+++.+ +.+|+..+ =+.+|-+-|..++..+|++. +.|+.|+.....++-.+|.
T Consensus 100 ~r~dl~LayA~~L~~~g-----~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQG-----NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp SHHHHHHHHHHHHHHHT-----CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 44443 44444333 12333344555555566665 6666665444322211111
Q ss_pred -----------HHHHHHHHHHHHHHhcc--CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 274 -----------KIFSAAIDNFDAMMLKG--NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 274 -----------~L~~aA~dKY~AAl~~~--n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
..|.+|++-|++++.-. +...++|+++-|++|..+-+ ...|+..|++++.++|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr------------~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN------------ESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCc-
Confidence 12455555666555422 22257788888888877763 35688899999999999
Q ss_pred hHHHHHHHh
Q 036322 341 LQVREALSS 349 (360)
Q Consensus 341 ~qa~~Al~~ 349 (360)
+++..||..
T Consensus 241 ~~~~~aL~~ 249 (282)
T 4f3v_A 241 PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999999864
No 111
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=3e-06 Score=81.14 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=96.4
Q ss_pred HHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch
Q 036322 121 EANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV 200 (360)
Q Consensus 121 ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~ 200 (360)
.+..+...|......++ +.+|.+.|.+|++++|.+..++.++|.+|...|+
T Consensus 5 ~a~~~~~lg~~~~~~g~--------~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------------------- 55 (477)
T 1wao_1 5 RAEELKTQANDYFKAKD--------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------------- 55 (477)
T ss_dssp HHTTSSSSSSSTTTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC---------------------
Confidence 34444444544444333 4578899999999999999999999988875322
Q ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 201 EEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 201 ~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
+.+|.+.|..|++++|++..+++|-|.++...+.-.+|.+.
T Consensus 56 ----------------------------------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~----- 96 (477)
T 1wao_1 56 ----------------------------------YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD----- 96 (477)
T ss_dssp ----------------------------------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH-----
T ss_pred ----------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-----
Confidence 13455578899999999999999999999887775555554
Q ss_pred HHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH-----------HhhccCCCch
Q 036322 281 DNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ-----------DALHMNSDNL 341 (360)
Q Consensus 281 dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye-----------~ALrLdpd~~ 341 (360)
|++++.+.+ ..++++++.|.+..... ..-+++|+..|+ +++.++|++.
T Consensus 97 --~~~al~~~p-~~~~~~~~l~~~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 97 --YETVVKVKP-HDKDAKMKYQECNKIVK----------QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp --HHHHHHHST-TCTTHHHHHHHHHHHHH----------HHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred --HHHHHHhCC-CCHHHHHHHHHHHHHHH----------HHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 444555433 45789999888743322 345778888899 9999998864
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.27 E-value=1.8e-05 Score=66.20 Aligned_cols=165 Identities=9% Similarity=-0.043 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
+|.+.|.+|++. .++.|.++||..|...|..+.-+. -++.++....|.....-+.+... . .+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~-~~~~a~~~g~~~a~~~lg~~y~~-~-g~------------- 65 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEY-WAQKAAAQGDGDALALLAQLKIR-N-PQ------------- 65 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHTTCHHHHHHHHHHTTS-S-TT-------------
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHc-C-CC-------------
Confidence 356777888775 788999999999888665553322 22333333222222222222221 0 01
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCC-ChhHHHhhHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNI-YAPDALFGWA 302 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~-~ap~AL~NWG 302 (360)
+.-+.+|.+-|..| .++++..|+||.|..+.. +++...|..+ |+.++..++. ..|.|+++.|
T Consensus 66 ----~~~~~~A~~~~~~A--~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~-------~~~A~~~~~~~~~~~a~~~Lg 132 (212)
T 3rjv_A 66 ----QADYPQARQLAEKA--VEAGSKSGEIVLARVLVNRQAGATDVAHAITL-------LQDAARDSESDAAVDAQMLLG 132 (212)
T ss_dssp ----SCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHH-------HHHHTSSTTSHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHcCCCCccCHHHHHHH-------HHHHHHcCCCcchHHHHHHHH
Confidence 11234555566666 347899999999999887 5554444444 4444454441 2379999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
..+..--.+.. =..+|+..|+.|+.+ |+++.+...|..|-.
T Consensus 133 ~~y~~g~g~~~--------d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 133 LIYASGVHGPE--------DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHTSSSSC--------CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHHHcCCCCCC--------CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 99876433222 245678888888888 777777777766643
No 113
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=4.6e-05 Score=53.90 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=76.2
Q ss_pred hhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH
Q 036322 123 NDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE 202 (360)
Q Consensus 123 ~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~ 202 (360)
..+...|..++..++ +..|.++|.+++.+.|.++.++.++|.+|...|..
T Consensus 5 ~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------- 54 (118)
T 1elw_A 5 NELKEKGNKALSVGN--------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY---------------------- 54 (118)
T ss_dssp HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------------------
T ss_pred HHHHHHHHHHHHccc--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH----------------------
Confidence 344445555544333 45678889999999999999999999887753221
Q ss_pred HHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 203 QKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 203 ~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
.+|...|..+++++|++..++++.|.++...+.. .+|++-
T Consensus 55 ---------------------------------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~ 94 (118)
T 1elw_A 55 ---------------------------------QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF-------EEAKRT 94 (118)
T ss_dssp ---------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-------HHHHHH
Confidence 2344467778888899899999998888776664 445555
Q ss_pred HHHHHhccCCChhHHHhhHHHHH
Q 036322 283 FDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 283 Y~AAl~~~n~~ap~AL~NWGlAL 305 (360)
|+.++...+ ..|.++++.|...
T Consensus 95 ~~~~~~~~~-~~~~~~~~l~~~~ 116 (118)
T 1elw_A 95 YEEGLKHEA-NNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHHhh
Confidence 555555433 4477777776653
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.24 E-value=4.4e-06 Score=67.00 Aligned_cols=107 Identities=12% Similarity=0.021 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHH---------------------------HHHHHHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFS---------------------------AAIDNFDAMML 288 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~---------------------------aA~dKY~AAl~ 288 (360)
.+|...|+.+++++|++..++++-|.++...|...+|...|. .|++-|++++.
T Consensus 23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 102 (176)
T 2r5s_A 23 AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELA 102 (176)
T ss_dssp HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 445556666666677777777766666655332222222111 24666777777
Q ss_pred ccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhhhhhcc
Q 036322 289 KGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN--LQVREALSSCMSELN 355 (360)
Q Consensus 289 ~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c~~el~ 355 (360)
+.| ..|+++++.|.++...- -+.+|+..|+++|+++|+. +.+...|..|...+.
T Consensus 103 ~~P-~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 103 ANP-DNFELACELAVQYNQVG------------RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HST-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hCC-CCHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 533 56899999999976544 3677899999999999986 668888877766553
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.24 E-value=3.6e-05 Score=64.21 Aligned_cols=169 Identities=12% Similarity=-0.031 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCcCCh---HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch------HHHHHHhhhhhhhhcc
Q 036322 146 LHKSARLLSQAIAMQHMSL---LAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV------EEQKRILKGLDYQFMN 216 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~---~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~------~~~~r~~~~ld~~~~~ 216 (360)
+.+|+..|.+++...|.++ .|++++|.+|...|....-+. .++.++... |.+. ...+.+...+....
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~-~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~-- 95 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQA-AIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSA-- 95 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhh--
Confidence 4578899999999999875 799999999999888765433 334444332 2211 11111111110000
Q ss_pred hhHHHHHHHHhhH--HHHHHHHHHHHHHHHHhhhCCCchhhHH-----------------hHHHhhhcccchhcHHHHHH
Q 036322 217 KDKIASLLVDACE--ECEELLVKAGRKYRLALSIDGNDVRALY-----------------NWGLALFFLETAFDADKIFS 277 (360)
Q Consensus 217 k~~~~~aL~~~~e--EaEeLL~eAgrKY~~Al~~dp~d~~ALY-----------------NWGlAL~~~~~a~eAe~L~~ 277 (360)
...+...+. .-..-+.+|...|+.+++.+|++..+.. +-|..+...+. |.
T Consensus 96 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~-------~~ 164 (225)
T 2yhc_A 96 ----LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA-------WV 164 (225)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------HH
T ss_pred ----hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------HH
Confidence 000000000 0013467888999999999999987652 22322222333 45
Q ss_pred HHHHHHHHHHhccC--CChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 278 AAIDNFDAMMLKGN--IYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 278 aA~dKY~AAl~~~n--~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
+|+.-|+.++..-| ...|+|+++-|.++..+- -..+|+..|+.++...|++.
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g------------~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ------------MNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC------------CcHHHHHHHHHHHhhCCCch
Confidence 66666666665422 234689999999987765 35567788888888888763
No 116
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.23 E-value=2.1e-05 Score=73.59 Aligned_cols=114 Identities=10% Similarity=-0.095 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHH-------HHHHHH------HHHHHHHHHhccCCCcchHHHHHHhhhhhhh
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLV-------REELKL------HFSCKLRRLLLEGDVISVEEQKRILKGLDYQ 213 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~-------~GeLKl------~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~ 213 (360)
..+..+|.+|+..+|.++++..++|..+.. .|.+.. +...-++.++..-.|.+..-|-....
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~----- 329 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD----- 329 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH-----
Confidence 356789999999999999999999998876 455431 22223344443222333222211111
Q ss_pred hcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCch-hhHHhHHHhhhcccchhcHHHHHHHH
Q 036322 214 FMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDV-RALYNWGLALFFLETAFDADKIFSAA 279 (360)
Q Consensus 214 ~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~-~ALYNWGlAL~~~~~a~eAe~L~~aA 279 (360)
.+... .-+.+|-.-|..|++++|+++ .++.+||..+...+...+|.++|..|
T Consensus 330 ---------~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 330 ---------YEESR-----MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp ---------HHHHT-----TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHhc-----CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11000 123455566777777777774 57777777665544434444444433
No 117
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.22 E-value=5e-05 Score=63.72 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=100.4
Q ss_pred HHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHH
Q 036322 154 SQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEE 233 (360)
Q Consensus 154 s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEe 233 (360)
+...+++|.++.+++++|.+++..|....-+. .++.++... |.+. ....+.- .++.++.. ..
T Consensus 5 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~-~~~~~l~~~-p~~~-~~~~a~~----------~lg~~~~~-----~~ 66 (261)
T 3qky_A 5 AGSGRLRHSSPQEAFERAMEFYNQGKYDRAIE-YFKAVFTYG-RTHE-WAADAQF----------YLARAYYQ-----NK 66 (261)
T ss_dssp ------CCSSHHHHHHHHHHHHHTTCHHHHHH-HHHHHGGGC-SCST-THHHHHH----------HHHHHHHH-----TT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhC-CCCc-chHHHHH----------HHHHHHHH-----hC
Confidence 34567899999999999999999888765433 345555443 3221 0011111 11111111 12
Q ss_pred HHHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhc--------ccchhcHHHHHHHHHHHHHHHHhccCCChhHHH----
Q 036322 234 LLVKAGRKYRLALSIDGND---VRALYNWGLALFF--------LETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL---- 298 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~--------~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL---- 298 (360)
-+.+|...|..++++.|++ ..|+|+=|.++.. .+...+|...|..+++.|- .+.+.+.++
T Consensus 67 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~~~ 141 (261)
T 3qky_A 67 EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-----NHELVDDATQKIR 141 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-----TCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-----CchhHHHHHHHHH
Confidence 3677888999999998854 6789999998876 5555555555555555442 223445555
Q ss_pred ----------hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH---HHHHHHhhhhh
Q 036322 299 ----------FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ---VREALSSCMSE 353 (360)
Q Consensus 299 ----------~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q---a~~Al~~c~~e 353 (360)
++.|..+..+- -+.+|+..|+.+|.++|+++. +.--|..|-..
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 197 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRE------------LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIA 197 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 77777765543 367899999999999999654 44445555443
No 118
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=4.7e-06 Score=64.55 Aligned_cols=82 Identities=20% Similarity=0.061 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+..|.+|++++|.+..+++++|.+|...|+.
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~--------------------------------------------- 67 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD--------------------------------------------- 67 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH---------------------------------------------
Confidence 34688899999999999999999999887753321
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
.+|...|++|++++|++..++++-|.++...|.. .+|++-|+.++.+
T Consensus 68 ----------~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 114 (121)
T 1hxi_A 68 ----------GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-------NAALASLRAWLLS 114 (121)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC-
T ss_pred ----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Confidence 3455678999999999999999999998875554 4555555555554
No 119
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.19 E-value=2.4e-06 Score=64.41 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhh---CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 236 VKAGRKYRLALSI---DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 236 ~eAgrKY~~Al~~---dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
.+|...|..|+++ +|++..+++|-|.++...+. |.+|++-|++++.+.+ ..|+++++.|.++..+-+
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~-- 76 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE-------YRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGR-- 76 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCC--
Confidence 4567789999999 79999999999999988777 4556666666666534 459999999999877653
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
+.+|+..|++||.++|+++.+..
T Consensus 77 ----------~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 77 ----------YEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp ----------HHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ----------HHHHHHHHHHHHHhCCCcHHHHH
Confidence 56788899999999999998764
No 120
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=1.9e-05 Score=56.87 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+..|...|..++..+|++..++++-|.++...+.-.+|...|..+++.+..-.. .....+.++++.|.++...-
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~----- 93 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-DYRQIAKAYARIGNSYFKEE----- 93 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-hHHHHHHHHHHHHHHHHHhc-----
Confidence 466777889999999999999999999998888877777777777766531100 00011789999999876543
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+..|+..|+.++.++| ++.+...+..|...+.
T Consensus 94 -------~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 94 -------KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -------CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 36778999999999999 5999999998877654
No 121
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=7.5e-06 Score=63.72 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+..|.+||+++|.++.++.|+|.+|+..|+.
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~--------------------------------------------- 58 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF--------------------------------------------- 58 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH---------------------------------------------
Confidence 56789999999999999999999999998864332
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchh-------hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVR-------ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~-------ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
.+|.+-|..|++++|+... +|+|-|.++...+. |.+|++-|+.++...+ .|+.+
T Consensus 59 ----------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~-------~~~A~~~~~kal~~~~--~~~~~ 119 (127)
T 4gcn_A 59 ----------AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND-------LSLAVQWFHRSLSEFR--DPELV 119 (127)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHSC--CHHHH
T ss_pred ----------HHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCc--CHHHH
Confidence 2344467777888777654 56666665544443 6777777877777544 26654
No 122
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.17 E-value=0.00014 Score=60.90 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLV 176 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~ 176 (360)
+|.+.|.+|++++ ++.+.+++|.+|..
T Consensus 60 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 60 KAASFYAKACDLN--YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHhC
Confidence 4555666666553 56666666666665
No 123
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=0.00016 Score=60.56 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHH----HHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLV----REELKL 182 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~----~GeLKl 182 (360)
+.+|.++|.+|++ |.++.|.+++|..|.. .|....
T Consensus 22 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~ 60 (273)
T 1ouv_A 22 FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKK 60 (273)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHH
Confidence 3467777888877 8889999999999997 666553
No 124
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.15 E-value=9.5e-05 Score=59.71 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHc--------CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc----CCCcchHHHHHHhhhhhhhh
Q 036322 147 HKSARLLSQAIAM--------QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE----GDVISVEEQKRILKGLDYQF 214 (360)
Q Consensus 147 ~~Aa~~~s~Al~~--------~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~----~~p~s~~~~~r~~~~ld~~~ 214 (360)
.+|...|.+|+++ .|....++.++|++|...|....-+.- ++.++.- .++. .+....+.
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~-~~~~~~~~------- 130 (283)
T 3edt_B 60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL-CKRALEIREKVLGKF-HPDVAKQL------- 130 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHHHHHCTT-CHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHcCCC-ChHHHHHH-------
Confidence 4677788888877 488889999999999999887654322 2222211 0000 01111111
Q ss_pred cchhHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHH
Q 036322 215 MNKDKIASLLVDA--CEECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDA 285 (360)
Q Consensus 215 ~~k~~~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~A 285 (360)
..++..+... -++|.+.+..|.+.+...... +|....++++.|.++...|...+|..+|.++++.+..
T Consensus 131 ---~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 131 ---NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp ---HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223333222 245555555554444333221 6778899999999999999999999999999987543
No 125
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=1.8e-05 Score=58.84 Aligned_cols=97 Identities=14% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
.|...|..+++.+|++..++++.|.++...+...+|... |+.++.+.+ ..+.++++.|.++.....
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p-~~~~~~~~la~~~~~~g~------ 68 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPH-------LRAALDFDP-TYSVAWKWLGKTLQGQGD------ 68 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCT-TCHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHHCC-CcHHHHHHHHHHHHHcCC------
Confidence 356789999999999999999999999887775555444 555555433 458999999999876542
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhhhhh
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDN--LQVREALSSCMSE 353 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c~~e 353 (360)
+.+|+..|+.|+.++|+. ..+...+......
T Consensus 69 ------~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 69 ------RAGARQAWESGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 456788888888888854 4555555444433
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.11 E-value=6.6e-05 Score=53.82 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|...|.+++.+.|.++.++.++|.+|...|..
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------------------------------------- 62 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY--------------------------------------------- 62 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch---------------------------------------------
Confidence 35677888899999999999999998777643211
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
.+|.+.|..+++++|++..++++.|.++...+... +|++-|+.++.+.+ ..+.++++.|.++
T Consensus 63 ----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~~~~~~p-~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 63 ----------AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHV-------EAVAYYKKALELDP-DNETYKSNLKIAE 124 (131)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHhcCc-cchHHHHHHHHHH
Confidence 33445677788889999999999999888877644 44555555555433 4588899888887
Q ss_pred HHhh
Q 036322 306 QQRS 309 (360)
Q Consensus 306 qerA 309 (360)
..+.
T Consensus 125 ~~~~ 128 (131)
T 2vyi_A 125 LKLR 128 (131)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6654
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.10 E-value=1.1e-05 Score=70.71 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.+|...|..|+.++|++..+++|-|.++...+. |.+|++-|+.++.+.+ ..+.++++.|.++..+-.
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~----- 87 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-------PEQALADCRRALELDG-QSVKAHFFLGQCQLEMES----- 87 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC-----
Confidence 456668999999999999999999999887666 4566666777777533 568999999999886653
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
+.+|+..|++|+.++|+++
T Consensus 88 -------~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 88 -------YDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp -------HHHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHhCccch
Confidence 5678888888888888774
No 128
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=3.6e-05 Score=71.52 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHH----------------cCcCChHHHhhhhhhHHHH
Q 036322 114 MFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIA----------------MQHMSLLAVDQLGNTYLVR 177 (360)
Q Consensus 114 ~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~----------------~~P~s~~Avgn~GNalL~~ 177 (360)
.++..+..+..+...|..+.+.++ +.+|+++|.+|++ ++|.+..++.|+|.+|+..
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~--------~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQN--------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367778888888888888776654 3445666666666 6777788888888776643
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHH
Q 036322 178 EELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALY 257 (360)
Q Consensus 178 GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALY 257 (360)
|+ +.+|.+.|..|++++|++.+|+|
T Consensus 287 g~-------------------------------------------------------~~~A~~~~~~al~~~p~~~~a~~ 311 (370)
T 1ihg_A 287 SD-------------------------------------------------------WQGAVDSCLEALEIDPSNTKALY 311 (370)
T ss_dssp TC-------------------------------------------------------HHHHHHHHHHHHTTCTTCHHHHH
T ss_pred cC-------------------------------------------------------HHHHHHHHHHHHHhCchhHHHHH
Confidence 21 24456678899999999999999
Q ss_pred hHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 258 NWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 258 NWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+.|.++...+. |.+|++-|++++.+.+ ..+.++.+.+.+++.+..
T Consensus 312 ~lg~~~~~~g~-------~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 312 RRAQGWQGLKE-------YDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Confidence 99999988666 4566677777777644 458888888888766543
No 129
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.09 E-value=1.6e-05 Score=59.02 Aligned_cols=82 Identities=21% Similarity=0.125 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.+...|.++++++|.++.+++++|.+|...|..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------------------------------------------- 35 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF----------------------------------------------- 35 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH-----------------------------------------------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH-----------------------------------------------
Confidence 467899999999999999999999888753221
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
.+|.+.|..|++++|+...++++.|.++...|...+|...|..|++...
T Consensus 36 --------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 36 --------DAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp --------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3345578889999999999999999999998888778888777776553
No 130
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=6.3e-06 Score=74.77 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhhCCCch-----------------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 235 LVKAGRKYRLALSIDGNDV-----------------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~-----------------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
+.+|.+.|..|+.++|++. .+++|.|.++...+.- .+|++-|+.++.+.+ ..+.+
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~-------~~A~~~~~~al~~~p-~~~~a 266 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY-------DEAIGHCNIVLTEEE-KNPKA 266 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC-CCHHH
Confidence 4678889999999999887 4999999998886664 455666666666533 45899
Q ss_pred HhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 298 LFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 298 L~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
|++.|.++..+-. +..|+..|++|+.++|+++.+...|..|..
T Consensus 267 ~~~lg~a~~~~g~------------~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 267 LFRRGKAKAELGQ------------MDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHTTTC------------HHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHcCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999876542 678999999999999999999999888743
No 131
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.07 E-value=5.1e-05 Score=56.55 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|..+|.+|+.++|.++.++.++|.+|...|..
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~--------------------------------------------- 59 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP--------------------------------------------- 59 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH---------------------------------------------
Confidence 45778888888999999999999999777743221
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
.+|..-|..|++++|++..++++-|.++...+...+|...|..|++...
T Consensus 60 ----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 60 ----------EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 3345578889999999999999999999988887777777777766553
No 132
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.06 E-value=1.7e-05 Score=73.72 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhh----------------hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 235 LVKAGRKYRLALS----------------IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 235 L~eAgrKY~~Al~----------------~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
+.+|.+.|..|++ ++|.+..+++|-|.++...+. |.+|++-|+.++.+.+ ..+.+|
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~a~ 310 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD-------WQGAVDSCLEALEIDP-SNTKAL 310 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCT-TCHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC-------HHHHHHHHHHHHHhCc-hhHHHH
Confidence 5667778888887 889999999999999887666 5666777777777533 568999
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++.|.++..+-. +++|+..|++|+.++|+++.+...|..|...+
T Consensus 311 ~~lg~~~~~~g~------------~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 311 YRRAQGWQGLKE------------YDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999876542 56789999999999999999999998887654
No 133
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.05 E-value=0.00028 Score=60.47 Aligned_cols=94 Identities=17% Similarity=0.035 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhhh------CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 230 ECEELLVKAGRKYRLALSI------DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~------dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
++...+.+|.+.|..++.+ .|....+++|-|.++...+.-.+|...|.+|++-+...-. +.....++++.|.
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~ 235 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--KAAERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHH
Confidence 5556688888888888877 5556678889998888888888888888888877653111 1112358888888
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
.+...-. ..++.+.+++|...+
T Consensus 236 ~~~~~g~-----~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 236 AYIFLGE-----FETASEYYKKTLLLA 257 (406)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHcCC-----hHHHHHHHHHHHHHH
Confidence 8765432 334444444444433
No 134
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=7.8e-06 Score=61.59 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHc---CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAM---QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~---~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
.+|+..|.+|+++ +|.+..++.++|.+|...|+
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~-------------------------------------------- 42 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE-------------------------------------------- 42 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------------------------------------------
Confidence 4578899999999 69999999999988875432
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
+.+|.+.|..|++++|+++.++++-|.++...|...+|...|..|++.
T Consensus 43 -----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 43 -----------YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp -----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 134556788999999999999999999999988866666666666554
No 135
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.02 E-value=0.00011 Score=60.55 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=102.6
Q ss_pred CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhc---cCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh--hHHHHHH
Q 036322 160 QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLL---EGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA--CEECEEL 234 (360)
Q Consensus 160 ~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla---~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~--~eEaEeL 234 (360)
.|....++.++|++|...|....-+. -++.++. ....+..+....+.. .++..+... -++|.+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~----------~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVP-LCKQALEDLEKTSGHDHPDVATMLN----------ILALVYRDQNKYKDAANL 91 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHCSSSHHHHHHHH----------HHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHH----------HHHHHHHHCCCHHHHHHH
Confidence 57778888899999988887654322 1222221 100000011111111 122233222 3556666
Q ss_pred HHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 235 LVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 235 L~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
+..|.+.+...... +|....++++.|..+...+.-.+|..+|..|++.++......+...+.++++.|..+...-.
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--- 168 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK--- 168 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC---
Confidence 65555555444322 46778899999999999999999999999999998766443334456888888888765432
Q ss_pred CChHHHHHHHHHHHHHHHHhhcc-CCCchHHHHHHHhhhhh
Q 036322 314 RNSKEKVKLLQQARRLYQDALHM-NSDNLQVREALSSCMSE 353 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrL-dpd~~qa~~Al~~c~~e 353 (360)
..++.+.+++|...++....- +|+.+.+...|..|-..
T Consensus 169 --~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 207 (311)
T 3nf1_A 169 --YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 207 (311)
T ss_dssp --HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 344444555554444432211 55566666666655443
No 136
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.99 E-value=7.3e-05 Score=65.35 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc----CCCcchHHHHHHhhhhhhhhcc
Q 036322 147 HKSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE----GDVISVEEQKRILKGLDYQFMN 216 (360)
Q Consensus 147 ~~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~----~~p~s~~~~~r~~~~ld~~~~~ 216 (360)
.+|...|.+|+++ .|....++.++|.+|...|....-+.. ++.++.- .++ .....+..
T Consensus 103 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~---~~~~~~~~-------- 170 (411)
T 4a1s_A 103 NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC-CERHLTLARQLGDR---LSEGRALY-------- 170 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHTCH---HHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHhhch---HHHHHHHH--------
Confidence 4678888888888 788999999999999999887654321 1111111 111 11111111
Q ss_pred hhHHHHHHHHh------------hHHHHHHHHHHHHHHHHHhhhC------CCchhhHHhHHHhhhcccchhcHHHHHHH
Q 036322 217 KDKIASLLVDA------------CEECEELLVKAGRKYRLALSID------GNDVRALYNWGLALFFLETAFDADKIFSA 278 (360)
Q Consensus 217 k~~~~~aL~~~------------~eEaEeLL~eAgrKY~~Al~~d------p~d~~ALYNWGlAL~~~~~a~eAe~L~~a 278 (360)
.++..+... ..++...+.+|.+.|..++++. +....++++-|.++...+.-.+|...|.+
T Consensus 171 --~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 171 --NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp --HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 122222222 3466677888888888888764 44556889999888888888888888888
Q ss_pred HHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 279 A~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
|++.+...-. ......++++.|..+...-. ..++.+.+++|...+.
T Consensus 249 al~~~~~~~~--~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 249 RLRIAREFGD--RAAERRANSNLGNSHIFLGQ-----FEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHHHHHHHTC--HHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--cHHHHHHHHHHHHHHHHCcC-----HHHHHHHHHHHHHHHH
Confidence 8887764211 11123578888887765432 3455555555554444
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.97 E-value=3.7e-05 Score=73.59 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..|++++|++..+++|.|.++...+. |.+|++-|++++.+.+ ..+.++++.|.++..+-
T Consensus 22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g----- 88 (477)
T 1wao_1 22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-------YGYALGDATRAIELDK-KYIKGYYRRAASNMALG----- 88 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC-----
Confidence 4667779999999999999999999999988776 4556666666666533 56899999999987654
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-+++|+..|++|+.++|+++.+...+..|.
T Consensus 89 -------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 89 -------KFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477)
T ss_dssp -------CHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 367789999999999999999998888873
No 138
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.96 E-value=0.00027 Score=62.62 Aligned_cols=163 Identities=16% Similarity=0.059 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHc--CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 147 HKSARLLSQAIAM--QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 147 ~~Aa~~~s~Al~~--~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
.+|++.|.++++. +|+++.++..+|.+|+..|+...-+ +.+ .. |....-+ ..++..+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al----~~l-~~--~~~~~~~--------------~~l~~~~ 140 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL----RTL-HQ--GDSLECM--------------AMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHH----HHH-TT--CCSHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHH----HHH-hC--CCCHHHH--------------HHHHHHH
Confidence 4577888888876 5999999999999999988776433 221 11 2221110 0111122
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHH--hHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALY--NWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALY--NWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
...+ -+.+|.+.|+.+++.+|++....+ .|...+...+.- .+|++-|+.++...+ ..|.++++-|
T Consensus 141 ~~~g-----~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~-------~eA~~~~~~~l~~~p-~~~~~~~~la 207 (291)
T 3mkr_A 141 LKLD-----RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKL-------QDAYYIFQEMADKCS-PTLLLLNGQA 207 (291)
T ss_dssp HHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHH-------HHHHHHHHHHHHHSC-CCHHHHHHHH
T ss_pred HHCC-----CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHH-------HHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 2111 135566678888888998753322 233333223444 445555555555433 4589999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
.++..+- -+..|...|++||.++|++++++..+..|...+.
T Consensus 208 ~~~~~~g------------~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 208 ACHMAQG------------RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 9976654 4678899999999999999999988877765543
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.94 E-value=0.00021 Score=50.80 Aligned_cols=63 Identities=24% Similarity=0.211 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+|..-|..+++++|++..++++.|.++...+...+|.. -|+.++...+ ..+.++.+.|.++..
T Consensus 61 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-------~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-------YYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-------HHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 34445666777788888888888888777666444444 4444444333 447888887777654
No 140
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.91 E-value=0.00021 Score=58.54 Aligned_cols=164 Identities=17% Similarity=0.082 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHH--HHHHHhccCCCcchHHHHHHhhhhhhhhcchhH
Q 036322 148 KSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSC--KLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK 219 (360)
Q Consensus 148 ~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~--~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~ 219 (360)
+|.+.|.+|+++ .|....++.++|.+|...|....-+.. ....+....+.+ .....+.. .
T Consensus 61 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~----------~ 128 (338)
T 3ro2_A 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--VGEARALY----------N 128 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHH----------H
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc--hHHHHHHH----------H
Confidence 455556666555 667788999999999999887654322 111112221111 11111111 1
Q ss_pred HHHHHHH---------------hhHHHHHHHHHHHHHHHHHhhh------CCCchhhHHhHHHhhhcccchhcHHHHHHH
Q 036322 220 IASLLVD---------------ACEECEELLVKAGRKYRLALSI------DGNDVRALYNWGLALFFLETAFDADKIFSA 278 (360)
Q Consensus 220 ~~~aL~~---------------~~eEaEeLL~eAgrKY~~Al~~------dp~d~~ALYNWGlAL~~~~~a~eAe~L~~a 278 (360)
++..... ..+++...+.+|-+.|..++.+ .|....++++.|..+...+.-.+|...|.+
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1222221 1345556677777777777766 445566888888888888888888888888
Q ss_pred HHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 279 A~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
|++.+...-. +.....++++.|..+...-. ..++.+.+++|...+
T Consensus 209 a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 209 RLLIAKEFGD--KAAERRAYSNLGNAYIFLGE-----FETASEYYKKTLLLA 253 (338)
T ss_dssp HHHHHHHHTC--HHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--hHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHH
Confidence 8877754211 11123578888888765542 344444554444443
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.90 E-value=9.4e-05 Score=52.00 Aligned_cols=86 Identities=17% Similarity=0.114 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCC--hhHHHhhHHHHHHHh-hhcC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIY--APDALFGWAVALQQR-SRLR 312 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~--ap~AL~NWGlALqer-A~lr 312 (360)
.+|...|..+++++|++..++++.|.++...+. |.+|++-|+.++.+.+ . .+.++++.|..+..+ .
T Consensus 23 ~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~~~~~--- 91 (112)
T 2kck_A 23 TESIDLFEKAIQLDPEESKYWLMKGKALYNLER-------YEEAVDCYNYVINVIE-DEYNKDVWAAKADALRYIEG--- 91 (112)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHTTCSS---
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHhC---
Confidence 456678899999999999999999999888666 4556666666666533 3 589999999887544 3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
-+++|+..|+.++...|+++
T Consensus 92 ---------~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 92 ---------KEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp ---------CSHHHHHHHHHHGGGCCCCC
T ss_pred ---------CHHHHHHHHHHHhhcccCCC
Confidence 24578899999999999875
No 142
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.89 E-value=7.3e-05 Score=61.29 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCcCCh----HHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhcchh
Q 036322 146 LHKSARLLSQAIAMQHMSL----LAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFMNKD 218 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~----~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~~k~ 218 (360)
+.+|..+|.+|+++.|.++ .++.++|.+|...|....-+.- ++.++ ...+. ......+..
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~--~~~~~~~~~---------- 87 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY-HHHDLTLARTIGD--QLGEAKASG---------- 87 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHTC--HHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhhcccc--cHHHHHHHH----------
Confidence 4568888999999999995 6788999999988876643221 11111 11100 011111111
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccc-------------hhcHHHHHHHH
Q 036322 219 KIASLLVDACEECEELLVKAGRKYRLALSIDGND------VRALYNWGLALFFLET-------------AFDADKIFSAA 279 (360)
Q Consensus 219 ~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~-------------a~eAe~L~~aA 279 (360)
.++...... .-+.+|...|..|+++.|.. ..++++-|..+...+. ..+|...|.+|
T Consensus 88 ~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 88 NLGNTLKVL-----GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 112222211 12344555566666554433 3488888888877555 56677778888
Q ss_pred HHHHHHHHhcc-----CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q 036322 280 IDNFDAMMLKG-----NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQD 332 (360)
Q Consensus 280 ~dKY~AAl~~~-----n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ 332 (360)
.+-|+.++... +...+.++++.|..+..... ..++.+.+++|...+..
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-----FRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHh
Confidence 88887766531 11224678888887766543 34555555555544433
No 143
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.84 E-value=8.7e-05 Score=61.88 Aligned_cols=104 Identities=7% Similarity=-0.056 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhhCCCch---hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc--CCChhHHHhhHHHHHHHhh
Q 036322 235 LVKAGRKYRLALSIDGNDV---RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG--NIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~---~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~--n~~ap~AL~NWGlALqerA 309 (360)
+.+|...|..+++..|++. +|+|+-|.++...+. |.+|++-|+.++..- +...|.|+++.|.++..+.
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~-------~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-------LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 4667778999999988764 799999988887777 455555555555542 2345679999999987643
Q ss_pred h--------cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 310 R--------LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 310 ~--------lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
. +.. ......-+.+|+..|+++|..+|+++.+..|+
T Consensus 93 ~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 93 DSALQGFFGVDR--SDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT 136 (225)
T ss_dssp C----------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred hhhhhhhhccch--hhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 1 100 01112357899999999999999999877664
No 144
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.84 E-value=0.00042 Score=57.94 Aligned_cols=163 Identities=15% Similarity=0.022 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH---HHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL---RRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L---r~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|.+.|.+|++. .++.|.++||..|.. |-+...+..++ +.++....|.....-+.+...
T Consensus 34 ~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~------------- 97 (212)
T 3rjv_A 34 YQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN------------- 97 (212)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-------------
Confidence 34677888888765 689999999999987 52222222222 233322222222122222110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCC--CchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDG--NDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPD 296 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp--~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~ 296 (360)
+.-...-+.+|.+-|..|++..| +...|+||-|..+.. +++...|...|..|+ .+++ .|.
T Consensus 98 -----g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-------~~~~--~~~ 163 (212)
T 3rjv_A 98 -----RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS-------SLSR--TGY 163 (212)
T ss_dssp -----GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-------HTSC--TTH
T ss_pred -----CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-------HcCC--CHH
Confidence 00012235778888999999988 459999999999988 556555555555554 4422 378
Q ss_pred HHhhHHHHHHHhhh--cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 297 ALFGWAVALQQRSR--LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 297 AL~NWGlALqerA~--lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
|+++-|..+..--. +... ...|+..|+.|+.+ +++.+...|.
T Consensus 164 a~~~Lg~~y~~g~gg~~~~d--------~~~A~~~~~~A~~~--g~~~A~~~l~ 207 (212)
T 3rjv_A 164 AEYWAGMMFQQGEKGFIEPN--------KQKALHWLNVSCLE--GFDTGCEEFD 207 (212)
T ss_dssp HHHHHHHHHHHCBTTTBCCC--------HHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCC--------HHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 99999999865432 2222 34566666766665 4556555544
No 145
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.81 E-value=0.00043 Score=49.24 Aligned_cols=100 Identities=20% Similarity=0.223 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..+++.+|++..++++.|..+...+...+|.++|..++ ...+ ..+.++++.|..+...-
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~-~~~~~~~~l~~~~~~~~----- 83 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-------ELDP-RSAEAWYNLGNAYYKQG----- 83 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHH-------HHCC-CchHHHHHHHHHHHHhc-----
Confidence 3566667888888999999999999988887776655666655554 4333 34788888888765432
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-+.+|+..|+.++.++|+++.+...+..|-...
T Consensus 84 -------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 84 -------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred -------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 256788888899999999998887777665443
No 146
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.80 E-value=0.0014 Score=61.37 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHH-cCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhH
Q 036322 141 RAEMILHKSARLLSQAIA-MQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK 219 (360)
Q Consensus 141 ~Ad~lL~~Aa~~~s~Al~-~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~ 219 (360)
.|..+...|.+.|..|++ +.|.+..+..++|+.+...|+...- ..-++.++.- .|.... .+.. .
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A-~~~~~~al~~-~p~~~~---~~~~----------~ 361 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV-HSIYNRLLAI-EDIDPT---LVYI----------Q 361 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHS-SSSCHH---HHHH----------H
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH-HHHHHHHhCc-cccCch---HHHH----------H
Confidence 334444588999999997 7999999999999999988866532 1123444433 232110 0110 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhh-cccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 220 IASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF-FLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 220 ~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~-~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
++..+.. ..-+.+|-+-|..|++..|..+..++.++.... ..|...+|.++|+.|++++ + ..|+++
T Consensus 362 ~~~~~~~-----~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-------p-~~~~~~ 428 (530)
T 2ooe_A 362 YMKFARR-----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------G-DIPEYV 428 (530)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-------T-TCHHHH
T ss_pred HHHHHHH-----hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-------C-CCHHHH
Confidence 1111111 122456777888888888888777776654421 2566667777777777654 2 348899
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
.++|..+... + -...|...|+.|+...|.+|.
T Consensus 429 ~~~~~~~~~~-----g-------~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 429 LAYIDYLSHL-----N-------EDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHTTT-----T-------CHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHHHHHhC-----C-------CHhhHHHHHHHHHhccCCCHH
Confidence 8888875432 2 134567777777777776664
No 147
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.80 E-value=0.00012 Score=53.99 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCcCCh---HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSL---LAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~---~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|...|.+++...|.++ .+++++|.+|...|.
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~------------------------------------------- 54 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN------------------------------------------- 54 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc-------------------------------------------
Confidence 4567788899999999998 799999988774322
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
+.+|..-|..++..+|++ ..++|+-|.++...|...+|...|..+++.|
T Consensus 55 ------------~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 55 ------------FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp ------------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ------------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 134555788889999999 8899999999988888666666666666554
No 148
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.80 E-value=0.00029 Score=50.66 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|...|.+++.+.|.++.++.++|.+|...|..
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~--------------------------------------------- 54 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY--------------------------------------------- 54 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccH---------------------------------------------
Confidence 45677888999999999999999999888754322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCc-------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGND-------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d-------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
.+|..-|..++.++|++ ..++++.|.++...+...+| .+-|+.++...+ .|++.
T Consensus 55 ----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-------~~~~~~~~~~~~--~~~~~ 115 (131)
T 1elr_A 55 ----------NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDA-------IHFYNKSLAEHR--TPDVL 115 (131)
T ss_dssp ----------HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHCC--CHHHH
T ss_pred ----------HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHH-------HHHHHHHHHhCC--CHHHH
Confidence 22333556666666665 88999999998887775444 444555555444 37888
Q ss_pred hhHHHHHHHhhh
Q 036322 299 FGWAVALQQRSR 310 (360)
Q Consensus 299 ~NWGlALqerA~ 310 (360)
...+..+..+..
T Consensus 116 ~~l~~~~~~~~~ 127 (131)
T 1elr_A 116 KKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877666554
No 149
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.00032 Score=69.54 Aligned_cols=177 Identities=11% Similarity=-0.028 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH------HHHHHHHH---HHHhccCCCcchH---HHHHHhhhhhhhhc
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL------KLHFSCKL---RRLLLEGDVISVE---EQKRILKGLDYQFM 215 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL------Kl~~s~~L---r~lla~~~p~s~~---~~~r~~~~ld~~~~ 215 (360)
+|.+++.++++++|+...|.+.=|.++...|.- +..+..+| ..++... |-+.. .++-++..+..
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~--- 122 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE--- 122 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS---
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc---
Confidence 468899999999999999999999999887751 11122333 3333332 32211 13333433210
Q ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh
Q 036322 216 NKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP 295 (360)
Q Consensus 216 ~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap 295 (360)
..+.+|-.-|..++++||.++.|.++=|.++..-+. .++++++-|+.++.+ ++...
T Consensus 123 -----------------~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~------~~~~el~~~~~~I~~-~p~n~ 178 (567)
T 1dce_A 123 -----------------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------APAEELAFTDSLITR-NFSNY 178 (567)
T ss_dssp -----------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC------CHHHHHHHHHTTTTT-TCCCH
T ss_pred -----------------ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC------ChHHHHHHHHHHHHH-CCCCc
Confidence 124566778999999999999999999999987542 357788888888885 55668
Q ss_pred HHHhhHHHHHHHhhhcCCCCh--HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 296 DALFGWAVALQQRSRLRPRNS--KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 296 ~AL~NWGlALqerA~lr~~ss--kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
.|+++=|.+|..+-.-...+. .-....++.|+..|..||.++|++..+-.=+.-...
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 999999999988633211100 012357999999999999999999988776554443
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.74 E-value=0.00011 Score=57.94 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH-HHHhhhcCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA-LQQRSRLRP 313 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA-LqerA~lr~ 313 (360)
+.+|...|..++..+|++..++++.|.++...+.-.+| ++-|+.++.+.+ ..+.++++.|.+ +...-..
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A-------~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~-- 95 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS-------LLAYRQALQLRG-ENAELYAALATVLYYQASQH-- 95 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCc--
Confidence 45566688999999999999999999999887775444 444555555433 358999999988 3333211
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
....|+..|+.++.++|+++.+...|..|--.+
T Consensus 96 --------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 96 --------MTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128 (177)
T ss_dssp --------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred --------chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 025788889999999999999988887775544
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.73 E-value=0.00042 Score=48.61 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=68.5
Q ss_pred hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 036322 248 IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQAR 327 (360)
Q Consensus 248 ~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~ 327 (360)
++|++..++++-|..+...+.- .+|+.-|+.++.+.+ ..+.++++.|..+...- -+.+|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~------------~~~~A~ 60 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNY-------TESIDLFEKAIQLDP-EESKYWLMKGKALYNLE------------RYEEAV 60 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCH-------HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTT------------CHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcc------------CHHHHH
Confidence 4799999999999999887764 455555555555433 35899999999876653 367889
Q ss_pred HHHHHhhccCCC--chHHHHHHHhhhhhc
Q 036322 328 RLYQDALHMNSD--NLQVREALSSCMSEL 354 (360)
Q Consensus 328 ~kye~ALrLdpd--~~qa~~Al~~c~~el 354 (360)
..|++++.++|+ ++.+..-+..|-..+
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 999999999999 999998888887665
No 152
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.73 E-value=6.2e-05 Score=54.08 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhhCCCchh-hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 235 LVKAGRKYRLALSIDGNDVR-ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~-ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
+.+|.+.|..+++.+|++.. ++++.|.++...+. |.+|++-|+.++.+.+ ..+.++++
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~------------- 74 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-------WQKALNNYQSAIELNP-DSPALQAR------------- 74 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHCT-TSTHHHHH-------------
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCC-CcHHHHHH-------------
Confidence 56788899999999999999 99999999987666 4555555666666533 44677654
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
..+.++..+|++++.++|+++
T Consensus 75 -------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 -------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp -------HHHHHHHHHHCCTTHHHHCCS
T ss_pred -------HHHHHHHHHHHHHhccCcccc
Confidence 478889999999999999875
No 153
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.72 E-value=0.0021 Score=60.39 Aligned_cols=156 Identities=10% Similarity=0.032 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH---HHHHHHHHHHHhccCCCcchH---HHHHHhhhhhhhhcchhHHHH
Q 036322 149 SARLLSQAIAMQHMSLLAVDQLGNTYLVREEL---KLHFSCKLRRLLLEGDVISVE---EQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL---Kl~~s~~Lr~lla~~~p~s~~---~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+..++..|...+|. |.++||+.|...|.- +.-+ .-++.++... |+... .-+.+...-.
T Consensus 164 a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~-~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~----------- 227 (452)
T 3e4b_A 164 VERICKAALNTTDI---CYVELATVYQKKQQPEQQAELL-KQMEAGVSRG-TVTAQRVDSVARVLGDAT----------- 227 (452)
T ss_dssp HHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHTT-CSCHHHHHHHHHHHTCGG-----------
T ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHH-HHHHHHHHCC-CHHHHHHHHHHHHHhCCC-----------
Confidence 34455556555555 889999998887733 2211 1233333333 33221 1222221110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHh-h--hcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHh
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLA-L--FFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALF 299 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlA-L--~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~ 299 (360)
-.+.-+.+|.+-|+.|+ |++..|+||-|.. + ...++..+|..+|..|+ ..+ .|.|++
T Consensus 228 -------~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-------~~g---~~~A~~ 287 (452)
T 3e4b_A 228 -------LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-------AAD---QPRAEL 287 (452)
T ss_dssp -------GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-------HTT---CHHHHH
T ss_pred -------CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------HCC---CHHHHH
Confidence 00112356667777776 8888888888887 3 22555555555555544 333 267888
Q ss_pred hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 300 GWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 300 NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+.|..+..-- -.+. -...|+..|++|+ |+++.+..-|..|-
T Consensus 288 ~Lg~~y~~G~-g~~~-------d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 288 LLGKLYYEGK-WVPA-------DAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHHCS-SSCC-------CHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCC-------CHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 8887776321 1111 1345666666666 66666666665543
No 154
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.72 E-value=0.00054 Score=59.64 Aligned_cols=170 Identities=11% Similarity=0.080 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCcCC------hHHHhhhhhhHHHH-HHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhc
Q 036322 146 LHKSARLLSQAIAMQHMS------LLAVDQLGNTYLVR-EELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFM 215 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s------~~Avgn~GNalL~~-GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~ 215 (360)
+.+|+.+|.+|+++.|.. ..++.++|++|... |+...-+.. ++.++ +..+.. .....+
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~-~~~Al~~~~~~~~~--~~~~~~--------- 160 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC-YELAGEWYAQDQSV--ALSNKC--------- 160 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHTTCH--HHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHhCCCh--HHHHHH---------
Confidence 346888999999998764 56899999999885 776643221 22222 111110 000011
Q ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchh-------hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHh
Q 036322 216 NKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVR-------ALYNWGLALFFLETAFDADKIFSAAIDNFDAMML 288 (360)
Q Consensus 216 ~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~-------ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~ 288 (360)
-.+++.++.... -+.+|...|..+++++|+... +++|.|+++...|...+| +.-|+.++.
T Consensus 161 -~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A-------~~~~~~al~ 227 (292)
T 1qqe_A 161 -FIKCADLKALDG-----QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA-------ARTLQEGQS 227 (292)
T ss_dssp -HHHHHHHHHHTT-----CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH-------HHHHHGGGC
T ss_pred -HHHHHHHHHHhC-----CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHh
Confidence 112333333332 256777899999999987654 678889888777775444 444555555
Q ss_pred ccCCChhH-----HHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 289 KGNIYAPD-----ALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 289 ~~n~~ap~-----AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+.+.. +. .+.+.+.++... . ..-+..|+..|+.++.++|++..++-=+...+
T Consensus 228 l~p~~-~~~~~~~~l~~l~~~~~~~-----~-----~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 228 EDPNF-ADSRESNFLKSLIDAVNEG-----D-----SEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp C----------HHHHHHHHHHHHTT-----C-----TTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred hCCCC-CCcHHHHHHHHHHHHHHcC-----C-----HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 42211 22 233333333211 1 12378899999999999999987776655554
No 155
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.70 E-value=0.00072 Score=57.94 Aligned_cols=188 Identities=13% Similarity=0.103 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhh
Q 036322 140 ERAEMILHKSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDVISVEEQKRILKGL 210 (360)
Q Consensus 140 ~~Ad~lL~~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~l 210 (360)
+.|...+.+|.+.|.+|+.+ .|....++.++|.+|...|....-+.. ++.++ +..+.+ .....+.
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~--~~~~~~~--- 230 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA-HEQRLLIAKEFGDK--AAERRAY--- 230 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH-HHHHHHHHHHTTCH--HHHHHHH---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHhcCCc--HHHHHHH---
Confidence 34555588888889998887 566678999999999998877643221 11111 221110 0001111
Q ss_pred hhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 211 DYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGND------VRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 211 d~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
..++.++...+ -+.+|.+.|..++++.|.. ..++++-|.++...|.-.+|...|..|++.+.
T Consensus 231 -------~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 231 -------SNLGNAYIFLG-----EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp -------HHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHcC-----ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 12222222221 2345555666666665544 77889999988888888888888888887765
Q ss_pred HHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 285 AMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 285 AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
..-. +...+.++++.|..+..+-. ..++.+.+++|...++.. ...|....+...|..|...
T Consensus 299 ~~~~--~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 299 ELND--RIGEGRACWSLGNAYTALGN-----HDQAMHFAEKHLEISREV-GDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp HTTC--HHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hcCC--cHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHH
Confidence 3211 11235788888888766542 345555555555555432 1234445555555555433
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.70 E-value=0.0039 Score=59.76 Aligned_cols=173 Identities=10% Similarity=-0.014 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH-HHHHHHHHHHHHhccCCCcc---hHHHHHHhhhhhhhhcchhHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREE-LKLHFSCKLRRLLLEGDVIS---VEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge-LKl~~s~~Lr~lla~~~p~s---~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
+|.+++.++|.++|+...|...=|.++...|. ++. ...-+..+|... |-. =+.|+.++..+-. .
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~e-EL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~---~------- 139 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLED-ELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP---Q------- 139 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC---S-------
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC---C-------
Confidence 57889999999999999999999999987764 332 222223444332 332 2234555554410 0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc-hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLET-AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~-a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
.+.++-.-+..++++||..+.|.++=|.+|..-+. ......+|.++++-++.++.+ ++....|.++=|
T Consensus 140 ----------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-dp~N~SAW~~R~ 208 (349)
T 3q7a_A 140 ----------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-DGRNNSAWGWRW 208 (349)
T ss_dssp ----------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred ----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 01355567889999999999999999988877221 112367889999999999996 555689999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
..|..+-+... ...+++.++.++.++|.++|+|..+-.=+.
T Consensus 209 ~lL~~l~~~~~-----~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr 249 (349)
T 3q7a_A 209 YLRVSRPGAET-----SSRSLQDELIYILKSIHLIPHNVSAWNYLR 249 (349)
T ss_dssp HHHTTSTTCCC-----CHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhcccccc-----chHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99887654321 245899999999999999999998865433
No 157
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00031 Score=48.69 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=62.7
Q ss_pred CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 251 NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 251 ~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
++..++++.|.++...+.-.+|...|. .++...+ ..+.++++.|.++...- -+.+|+..|
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~-------~a~~~~~-~~~~~~~~l~~~~~~~~------------~~~~A~~~~ 66 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQ-------KALELDP-NNAEAWYNLGNAYYKQG------------DYDEAIEYY 66 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH-------HHHHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHH-------HHHhcCC-CCHHHHHHHHHHHHHHh------------hHHHHHHHH
Confidence 567899999998887776555555544 4444433 45899999999976543 367889999
Q ss_pred HHhhccCCCchHHHHHHHhhhhh
Q 036322 331 QDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 331 e~ALrLdpd~~qa~~Al~~c~~e 353 (360)
++|+.++|+++.+...|..|...
T Consensus 67 ~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 67 QKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHh
Confidence 99999999999999888877543
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=0.00024 Score=52.75 Aligned_cols=96 Identities=19% Similarity=0.087 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCcCC---hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMS---LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s---~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+..|.++|.+++++.|.+ ..++.++|.+|...|.
T Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~------------------------------------------- 80 (148)
T 2dba_A 44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED------------------------------------------- 80 (148)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-------------------------------------------
Confidence 456888999999999988 8888888877764321
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
+.+|.+.|..+++++|++..++++.|.++...+...+| ++-|+.++.+.+ ..+++....+
T Consensus 81 ------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A-------~~~~~~al~~~p-~~~~~~~~l~ 140 (148)
T 2dba_A 81 ------------YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQA-------VLDLQRCVSLEP-KNKVFQEALR 140 (148)
T ss_dssp ------------HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHH-------HHHHHHHHHHCS-SCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHHcCC-CcHHHHHHHH
Confidence 13445567778888999999999999988876664444 444444444433 3466665544
Q ss_pred HH
Q 036322 303 VA 304 (360)
Q Consensus 303 lA 304 (360)
..
T Consensus 141 ~~ 142 (148)
T 2dba_A 141 NI 142 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00059 Score=48.77 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=64.6
Q ss_pred chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 252 DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 252 d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
+..++++-|.++...+. |.+|++-|+.++.+.+ ..|.++++.|.++..+-. +.+|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~------------~~~A~~~~~ 62 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL-------YREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGE------------YTQAIQMCQ 62 (111)
T ss_dssp HHHHHHHHHHHHHTTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcC------------HHHHHHHHH
Confidence 45788888888877666 4566666666666544 458999999999876542 678999999
Q ss_pred HhhccCCCc------hHHHHHHHhhhhhcc
Q 036322 332 DALHMNSDN------LQVREALSSCMSELN 355 (360)
Q Consensus 332 ~ALrLdpd~------~qa~~Al~~c~~el~ 355 (360)
.||.++|++ +.+.-.+..|...+.
T Consensus 63 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 63 QGLRYTSTAEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHTSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 777777777766554
No 160
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.60 E-value=0.0012 Score=58.34 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHH---HHHHHhccCCCcchHHHHHHhhhhhhhhcc
Q 036322 146 LHKSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSC---KLRRLLLEGDVISVEEQKRILKGLDYQFMN 216 (360)
Q Consensus 146 L~~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~---~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~ 216 (360)
+.+|...|.+|+.+ .|....+++++|++|...|....-+.- +|. +.... +........+.
T Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~-~~~~~~~~~~~--------- 187 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE-IYKEH-EAYNIRLLQCH--------- 187 (383)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHTC-STTHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhC-ccchHHHHHHH---------
Confidence 34677888888887 444668999999999998877654332 121 11111 10001111111
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 217 KDKIASLLVDACEECEELLVKAGRKYRLALSIDGND------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 217 k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
..++.+.... .-+.+|-+.|..|+++.|.. ..+++|-|.+....|.-.+|...|.+|++-++..-..
T Consensus 188 -~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~- 260 (383)
T 3ulq_A 188 -SLFATNFLDL-----KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL- 260 (383)
T ss_dssp -HHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-
T ss_pred -HHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-
Confidence 1122222222 12445555666666664433 3599999999988888888888888888776532211
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
+..+.++++.|..+..+-. ..++.+.+++|....
T Consensus 261 -~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 261 -PSLPQAYFLITQIHYKLGK-----IDKAHEYHSKGMAYS 294 (383)
T ss_dssp -GGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHH
Confidence 3458999999999876542 345555555554443
No 161
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00025 Score=50.73 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|++.|.+|++++|.++.+++++|.+|...|+.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------------------------------- 54 (111)
T 2l6j_A 20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY--------------------------------------------- 54 (111)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH---------------------------------------------
Confidence 45788999999999999999999999888754322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhc
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGND------VRALYNWGLALFF 265 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~ 265 (360)
.+|.+-|..|++++|++ ..++++.|.++..
T Consensus 55 ----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 55 ----------TQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA 90 (111)
T ss_dssp ----------HHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 34555788889999998 8888888887655
No 162
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.49 E-value=0.0035 Score=58.08 Aligned_cols=98 Identities=18% Similarity=0.052 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
.-+.+|.+-|+.|++. ++..|+||-|..+.. +++..+|-..|..|+ ..++ |+|+++-|..+..-
T Consensus 345 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~-------~~~~---~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA-------EQGL---SAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-------HTTC---HHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-------hCCC---HHHHHHHHHHHHcC
Confidence 3567788888888876 689999999999887 566555555555544 4433 89999999998753
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCC---chHHHHHHHhh
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSD---NLQVREALSSC 350 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd---~~qa~~Al~~c 350 (360)
-... . -..+|+..|+.|+.++|+ ++.+...|..+
T Consensus 413 ~g~~-~-------d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 413 LGVE-R-------DYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp SSSC-C-------CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred CCCC-C-------CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 2222 2 245788899999999955 88887776554
No 163
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.49 E-value=0.00056 Score=59.40 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhccc---chhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLE---TAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~---~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
+.+..+-+.|..++..+|.+.++.+|.|.+|.-.+ .-.++-.++++.+++- .+....++||+-|++. .
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~------~p~~~rd~lY~LAv~~---~ 82 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG------SKEEQRDYVFYLAVGN---Y 82 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------CccchHHHHHHHHHHH---H
Confidence 45566667999999999999999999999998844 3335555555555431 1224579999999997 3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
+++ =...|.++++.+|+++|++.||+.....+..
T Consensus 83 kl~---------~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 83 RLK---------EYEKALKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HTS---------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred Hcc---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333 3467899999999999999999998776654
No 164
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.47 E-value=0.0034 Score=58.91 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH-Hhhhc
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFF-LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ-QRSRL 311 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq-erA~l 311 (360)
-+.+|.+-|+.|++..|.+..++||-|..+.. .+.. .=+.+|++-|+.+. . ..|.|+++.|..+- ...
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~----~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~-- 263 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT----PDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPE-- 263 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS----CCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGG--
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC----CCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCC--
Confidence 44555555666666555555555666655543 1111 12456666666554 2 22566666666522 111
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
.. -..+|+..|++|+. ++++.+...|-.|-
T Consensus 264 -~~-------d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 264 -LG-------DVEQMMKYLDNGRA--ADQPRAELLLGKLY 293 (452)
T ss_dssp -GC-------CHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred -CC-------CHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence 11 23456666666663 34566665555544
No 165
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.45 E-value=0.00057 Score=54.57 Aligned_cols=114 Identities=12% Similarity=-0.001 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+++ +| ++.++.++|++|...|....-+.. ++.++.-. |..... . -.++.++..
T Consensus 23 ~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~-~~~~~~----~----------~~lg~~~~~ 83 (213)
T 1hh8_A 23 KGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKA-FTRSINRD-KHLAVA----Y----------FQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHC-TTCHHH----H----------HHHHHHHHH
T ss_pred HHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhC-ccchHH----H----------HHHHHHHHH
Confidence 45666666664 44 778999999999888876644322 23333222 221100 0 011222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCch----------------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDV----------------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~----------------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
. .-+.+|.+.|..++++.|++. .+++|.|.++...|.-.+ |++-|+.++.+.
T Consensus 84 ~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 T-----EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK-------AEEQLALATSMK 151 (213)
T ss_dssp T-----TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH-------HHHHHHHHHTTC
T ss_pred c-----ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH-------HHHHHHHHHHcC
Confidence 1 224667778888898887766 999999999988777544 444555555543
Q ss_pred C
Q 036322 291 N 291 (360)
Q Consensus 291 n 291 (360)
+
T Consensus 152 p 152 (213)
T 1hh8_A 152 S 152 (213)
T ss_dssp C
T ss_pred c
Confidence 3
No 166
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.45 E-value=0.0077 Score=55.93 Aligned_cols=178 Identities=9% Similarity=-0.074 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHH--HHHHHHHHHHHHHhccC-CCc-chHHHHHHhhhhhhhhcchhHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVRE--ELKLHFSCKLRRLLLEG-DVI-SVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~G--eLKl~~s~~Lr~lla~~-~p~-s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
+|.+++.++|.++|+...|.+.=|.++...| .+...+ .-+..+|... .-+ .=+.|+.++..+-......
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL-~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~------ 123 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDEL-DWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND------ 123 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHH-HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC------
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHH-HHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc------
Confidence 5789999999999999999999999998777 333221 1122333222 111 1344666663321111000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
.-+.++-.-+..+++++|..+.|.++=|.+|..-+.-. ..++++-++.++.. ++....|.++=|.
T Consensus 124 ---------~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~-----~~~EL~~~~~~i~~-d~~N~sAW~~R~~ 188 (306)
T 3dra_A 124 ---------FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHN-----DAKELSFVDKVIDT-DLKNNSAWSHRFF 188 (306)
T ss_dssp ---------CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC-----hHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 01355667889999999999999999999998744311 12677777888875 4445789999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
.|..+-+.. ...+++.++.++..+|.++|+|..+-.=+.-+...
T Consensus 189 ll~~l~~~~------~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 189 LLFSKKHLA------TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHSSGGGC------CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHhccccc------hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 988764321 24579999999999999999999987665555443
No 167
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.45 E-value=0.0052 Score=54.58 Aligned_cols=160 Identities=15% Similarity=0.009 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHHHHHH--HhccCCCcchHHHHHHhhhhhhhhcch
Q 036322 146 LHKSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSCKLRR--LLLEGDVISVEEQKRILKGLDYQFMNK 217 (360)
Q Consensus 146 L~~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~--lla~~~p~s~~~~~r~~~~ld~~~~~k 217 (360)
+.+|...|.+|+.+ .|....+++++|.+|...|....-+.--.++ +....+.. ......+.
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~---------- 185 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-SIRTIQSL---------- 185 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC-HHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc-hhhHHHHH----------
Confidence 34677888888877 3445679999999999988776543321111 11111100 00001111
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCC------CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 218 DKIASLLVDACEECEELLVKAGRKYRLALSIDG------NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 218 ~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp------~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
-.++.+....+ -+.+|.+.|..|+++.+ ....+++|-|.+....+.-.+|...|.+|++-++.. .+
T Consensus 186 ~~lg~~y~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~ 257 (378)
T 3q15_A 186 FVIAGNYDDFK-----HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VP 257 (378)
T ss_dssp HHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CG
T ss_pred HHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CC
Confidence 12233332222 13344445555554422 345689999999888888888888888888876543 22
Q ss_pred CChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 036322 292 IYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHM 336 (360)
Q Consensus 292 ~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrL 336 (360)
+..+.++++.|..+..+-. ..+|...|++|+.+
T Consensus 258 ~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~ 290 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQ------------TQKAFQFIEEGLDH 290 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHH
Confidence 3348999999999865542 34566666666666
No 168
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.39 E-value=0.00035 Score=50.07 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCcCChH-HHhhhhhhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLL-AVDQLGNTYLVREE 179 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~-Avgn~GNalL~~Ge 179 (360)
+.+|++.|.++++++|.++. ++.++|.+|...|+
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~ 50 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD 50 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999 99999988885443
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.37 E-value=0.011 Score=56.11 Aligned_cols=186 Identities=10% Similarity=-0.028 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH--HHHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhh
Q 036322 139 EERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE--LKLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQ 213 (360)
Q Consensus 139 e~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge--LKl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~ 213 (360)
++....++..+..++..++.++|.++.|...=|.++-..|. .. +...-+..++.. +|-.-.. ++-++..+.
T Consensus 83 ~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~-~EL~~~~k~l~~-dprNy~AW~~R~~vl~~l~-- 158 (331)
T 3dss_A 83 PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA-RELELCARFLEA-DERNFHCWDYRRFVAAQAA-- 158 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH-HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT--
T ss_pred chhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH-HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhC--
Confidence 34456779999999999999999999999999987776553 11 111112333332 2332212 223333221
Q ss_pred hcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhccc--c-----hhcHHHHHHHHHHHHHHH
Q 036322 214 FMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLE--T-----AFDADKIFSAAIDNFDAM 286 (360)
Q Consensus 214 ~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~--~-----a~eAe~L~~aA~dKY~AA 286 (360)
..+.++...|..+|+.+|.++.|.++=|.+|.... . .......+.++++-|+.+
T Consensus 159 -------------------~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a 219 (331)
T 3dss_A 159 -------------------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 219 (331)
T ss_dssp -------------------CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH
T ss_pred -------------------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH
Confidence 11355667899999999999999999999987621 1 111247899999999999
Q ss_pred HhccCCChhHHHh-hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 287 MLKGNIYAPDALF-GWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 287 l~~~n~~ap~AL~-NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
+...| ..+.|.+ .-|+..+... ++..+.++...++.++..|.++|.++||+.=+..++..+
T Consensus 220 i~~~P-~d~SaW~Y~r~ll~~~~~--~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 220 FFTDP-NDQSAWFYHRWLLGAGSG--RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp HHHST-TCHHHHHHHHHHHHSSSC--GGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHhccC--ccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 98755 4466664 4455443322 122347899999999999999999999997776665544
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.34 E-value=0.0069 Score=57.44 Aligned_cols=170 Identities=11% Similarity=-0.015 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH------HHHHHHHH---HHHhccCCCcch---HHHHHHhhhhhhhhc
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL------KLHFSCKL---RRLLLEGDVISV---EEQKRILKGLDYQFM 215 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL------Kl~~s~~L---r~lla~~~p~s~---~~~~r~~~~ld~~~~ 215 (360)
+|.+++.++|.++|++.-|...=|.++...|.- +..+..+| ..+|... |-+. +.++-++..+..
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~--- 123 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE--- 123 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS---
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc---
Confidence 478899999999999999999999888766541 11133344 2333322 3221 223344443321
Q ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh
Q 036322 216 NKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP 295 (360)
Q Consensus 216 ~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap 295 (360)
..+.++-.-|..++++||..+.|.++=|.+|...+. .+.++++-|+.++.. ++...
T Consensus 124 -----------------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~------~~~eel~~~~~~I~~-~p~N~ 179 (331)
T 3dss_A 124 -----------------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------APAEELAFTDSLITR-NFSNY 179 (331)
T ss_dssp -----------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHH-CSCCH
T ss_pred -----------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc------CHHHHHHHHHHHHHH-CCCCH
Confidence 024566668999999999999999999999988553 257788888888885 55668
Q ss_pred HHHhhHHHHHHHhhhcCCCC--hHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 296 DALFGWAVALQQRSRLRPRN--SKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 296 ~AL~NWGlALqerA~lr~~s--skEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.|.++=|..|..+-.-.+.+ .+.....+..++.++..||.++|++..+-.
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~ 231 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 231 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999998773222110 011235799999999999999999998864
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.29 E-value=0.001 Score=48.80 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=45.9
Q ss_pred hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 036322 253 VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRL 329 (360)
Q Consensus 253 ~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~k 329 (360)
..+++|.|.++...+.-.+|...+..|++.+...-. +...+.++++.|..+..+-. ..++.+.+++|...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGN-----HDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--hHhHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHH
Confidence 678899999988888888899999888887753211 11235778888877655532 33444444444443
No 172
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.26 E-value=0.0085 Score=52.99 Aligned_cols=148 Identities=14% Similarity=0.003 Sum_probs=91.3
Q ss_pred HHHHhhhhHHHHhhhhcC-CchHHHHHHH------------HHHHHHHHHHHHcC-------cCChHHHhhhhhhHHHHH
Q 036322 119 LTEANDLPKHAKECMKSG-WDEERAEMIL------------HKSARLLSQAIAMQ-------HMSLLAVDQLGNTYLVRE 178 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~-~De~~Ad~lL------------~~Aa~~~s~Al~~~-------P~s~~Avgn~GNalL~~G 178 (360)
.++|...+++|-+..+.. ++.+.++... .+|...|.+|+++. |....++.++|.+|...|
T Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 198 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK 198 (383)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc
Confidence 467777788877765553 3444554432 45788899999984 444569999999999988
Q ss_pred HHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhh-----hC-
Q 036322 179 ELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALS-----ID- 249 (360)
Q Consensus 179 eLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~-----~d- 249 (360)
+...-+.. +..++ ...+. ......+. -+++...... .-+.+|.+.|..|++ .+
T Consensus 199 ~~~~A~~~-~~~al~~~~~~~~--~~~~~~~~----------~~lg~~y~~~-----g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 199 QYEDAISH-FQKAYSMAEAEKQ--PQLMGRTL----------YNIGLCKNSQ-----SQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp CHHHHHHH-HHHHHHHHHHTTC--HHHHHHHH----------HHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCG
T ss_pred CHHHHHHH-HHHHHHHHHHcCC--hHHHHHHH----------HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhccc
Confidence 87654322 11122 11100 00011111 1122222222 224556666677776 46
Q ss_pred CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 250 GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 250 p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
|....+++|-|.++...|...+|...|.+|++-..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88899999999999988888888888888887654
No 173
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.25 E-value=0.0016 Score=44.97 Aligned_cols=65 Identities=23% Similarity=0.197 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+.+|.+.|..|++++|++..++++.|.++...+...+|. +-|+.++.+.+ ..+.++++.|.++..
T Consensus 25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-------~~~~~a~~~~p-~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI-------EYYQKALELDP-NNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHhcCC-CCHHHHHHHHHHHHh
Confidence 456777899999999999999999999998877754444 44555555433 458999999998764
No 174
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.25 E-value=0.00049 Score=51.12 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=54.2
Q ss_pred hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 036322 248 IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQAR 327 (360)
Q Consensus 248 ~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~ 327 (360)
.+|++..++|+-|.++...+. |.+|++-|+.++.+.+ ..+.++++.|.++..+-. +.+|+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~------------~~~A~ 61 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDN-------ASRALALFEELVETDP-DYVGTYYHLGKLYERLDR------------TDDAI 61 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTC------------HHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCC------------HHHHH
Confidence 479999999999999988776 4566666666666534 458999999999876653 56778
Q ss_pred HHHHHhhccCCCch
Q 036322 328 RLYQDALHMNSDNL 341 (360)
Q Consensus 328 ~kye~ALrLdpd~~ 341 (360)
..|++||.+.|+.+
T Consensus 62 ~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 62 DTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhcCC
Confidence 88888888876543
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.18 E-value=0.022 Score=44.49 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=85.2
Q ss_pred cCc-CChHHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh--hHHHH
Q 036322 159 MQH-MSLLAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA--CEECE 232 (360)
Q Consensus 159 ~~P-~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~--~eEaE 232 (360)
.+| ....++.++|++|...|+...-+.. ++.++ ...+.+ .....+.. .++...... -++|.
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~--~~~~~~~~----------~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 20 AHPATASGARFMLGYVYAFMDRFDEARAS-FQALQQQAQKSGDH--TAEHRALH----------QVGMVERMAGNWDAAR 86 (203)
T ss_dssp TSTTTHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHTTCCH--HHHHHHHH----------HHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHHHHcCCc--HHHHHHHH----------HHHHHHHHcCCHHHHH
Confidence 355 6788999999999999887643221 12222 111110 11111111 122222222 24455
Q ss_pred HHHHHHHHHHHHHhhhCC-CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 233 ELLVKAGRKYRLALSIDG-NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp-~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+.+|.+.+... .-+| ....+++|-|.++...|...+|...+.+|++-+...-. +.....++++.|..+..+-
T Consensus 87 ~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g-- 161 (203)
T 3gw4_A 87 RCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACAFRGLGDLAQQEK-- 161 (203)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHCc--
Confidence 5555544444321 0022 34567889998888888888899999999887642111 1112356677777766543
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQD 332 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ 332 (360)
...++.+.+++|...+++
T Consensus 162 ---~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 162 ---NLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHH
Confidence 255777777777776664
No 176
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.16 E-value=0.0012 Score=48.98 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
.+|.+.|..|++++|++..++++-|.++...+...+|...|..|++-
T Consensus 24 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 24 SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556889999999999999999999998888877777776666654
No 177
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.14 E-value=0.01 Score=67.32 Aligned_cols=210 Identities=12% Similarity=0.054 Sum_probs=126.7
Q ss_pred HHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc--CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 036322 119 LTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM--QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGD 196 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~--~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~ 196 (360)
+-+.+.+..+|-++.+.......|-..|.+++.-|.+|++. ++.++.+.+++|.|++..|+.+.-+..=.+ ..+
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiK----AdD 1133 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK----ADD 1133 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHh----cCC
Confidence 33445556667677666677777767778889999999887 699999999999999999998865554323 233
Q ss_pred CcchHHHHHHhhhhhhhhcchhHHHHHHHHh-------------hHHHHHHHH----HHHHHHHHHhhhCCCchhhHHhH
Q 036322 197 VISVEEQKRILKGLDYQFMNKDKIASLLVDA-------------CEECEELLV----KAGRKYRLALSIDGNDVRALYNW 259 (360)
Q Consensus 197 p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~-------------~eEaEeLL~----eAgrKY~~Al~~dp~d~~ALYNW 259 (360)
|.....-+..+..+. +...++... .+++..+-. ++...| +++.....+++|
T Consensus 1134 ~say~eVa~~~~~lG-------kyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f-----I~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSG-------NWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF-----INGPNNAHIQQV 1201 (1630)
T ss_pred hHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH-----HhCCCHHHHHHH
Confidence 332222222222211 111111110 001110000 112222 244556789999
Q ss_pred HHhhhcccchhcHHHHHHHHH------------HHHHHHHhc-cCCChhHHHhhHHHHH-----HHhhhcCC----CCh-
Q 036322 260 GLALFFLETAFDADKIFSAAI------------DNFDAMMLK-GNIYAPDALFGWAVAL-----QQRSRLRP----RNS- 316 (360)
Q Consensus 260 GlAL~~~~~a~eAe~L~~aA~------------dKY~AAl~~-~n~~ap~AL~NWGlAL-----qerA~lr~----~ss- 316 (360)
|..+-..|.-.+|-.+|..|- .+|++|++. .....++++.+|+.|. -.+|+.-. ..+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~d 1281 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD 1281 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHH
Confidence 999999887777777777763 234544442 1124579999999997 34444322 011
Q ss_pred --------HHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 317 --------KEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 317 --------kEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
-|+.-.++.|+++|+.||.++|.....-
T Consensus 1282 eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1282 ELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 2334457789999999999998776554
No 178
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.03 E-value=0.13 Score=44.17 Aligned_cols=201 Identities=13% Similarity=0.081 Sum_probs=111.6
Q ss_pred HhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChH------HHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 036322 122 ANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLL------AVDQLGNTYLVREELKLHFSCKLRRLLLEG 195 (360)
Q Consensus 122 a~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~------Avgn~GNalL~~GeLKl~~s~~Lr~lla~~ 195 (360)
...+..++...+.-++ ..+|.+.|.+++...|.... ..+++|..+...|....-+. .+..++.-.
T Consensus 75 ~~~l~~~~~~~~~~~~--------y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~ 145 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKR--------YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL-ELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHH-HHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhh--------HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHH
Confidence 3445555555544333 33567788888888776543 35566666665544432221 223333211
Q ss_pred CCc-chHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHh---hhCCCc----hhhHHhHHHhhhccc
Q 036322 196 DVI-SVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLAL---SIDGND----VRALYNWGLALFFLE 267 (360)
Q Consensus 196 ~p~-s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al---~~dp~d----~~ALYNWGlAL~~~~ 267 (360)
... .......+.. .++.+....+ -+.+|-..|..|+ +..|++ ..+++|-|.++..-+
T Consensus 146 ~~~~~~~~~~~~~~----------~lg~~y~~~~-----~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 146 LTGIDVYQNLYIEN----------AIANIYAENG-----YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp CCSSCTTHHHHHHH----------HHHHHHHHTT-----CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCchHHHHHHHH----------HHHHHHHHcC-----CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 000 0000011111 1223332222 2334445555555 334553 279999999999988
Q ss_pred chhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHH-HHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 268 TAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEK-VKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 268 ~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk-~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
.-.+|...|.+|++-... .. .....+.+|++.|..+..+-. ..++ ...+++|...++. -+++...+.
T Consensus 211 ~y~~Al~~~~kal~~~~~-~~-~~~~~~~~~~~lg~~y~~~g~-----~~~Ai~~~~~~Al~~~~~-----~~~~~~~~~ 278 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCR-IN-SMALIGQLYYQRGECLRKLEY-----EEAEIEDAYKKASFFFDI-----LEMHAYKEA 278 (293)
T ss_dssp CHHHHHHHHHHHHHHHHH-TT-BCSSHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh-cC-cHHHHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHHHH-----hCcHhhHHH
Confidence 888888888888876532 11 222347899999999876653 3455 5667777776653 356666777
Q ss_pred HHhhhhhcccCC
Q 036322 347 LSSCMSELNHGD 358 (360)
Q Consensus 347 l~~c~~el~~~~ 358 (360)
+..=++-|.|++
T Consensus 279 ~~~~~~~~~~~~ 290 (293)
T 2qfc_A 279 LVNKISRLEHHH 290 (293)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHhhcc
Confidence 888888887765
No 179
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.95 E-value=0.1 Score=44.82 Aligned_cols=227 Identities=13% Similarity=0.068 Sum_probs=119.1
Q ss_pred chhhhhhcccCCCCCCC--CccccccccccccccCCCCCcccchHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHH
Q 036322 71 QIYSSMLREEKVNPEDD--SHLTDHLRARESEISSSSSSKFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHK 148 (360)
Q Consensus 71 ~~~~s~~~~~~~~~~~~--~~l~~~~~~~~~e~~~~~s~~~~d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~ 148 (360)
.++=|++..+...|..+ ..|.+.+.++-.++-...... +...+..+.+.+..+++ .++ +.+
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~i~~~~~-------~~~--------y~~ 93 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYS--DIERKKQFKDQVIMLCK-------QKR--------YKE 93 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSS--CHHHHHHHHHHHHHHHH-------TTC--------HHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCC--cchhHHHHHHHHHHHHH-------Hhh--------HHH
Confidence 44556666665544332 234555556655554333221 12223333333333333 222 356
Q ss_pred HHHHHHHHHHcCcCChHH------HhhhhhhHHHHHHHHHHHHHHHHHHhccC-CCcchHHHHHHhhhhhhhhcchhHHH
Q 036322 149 SARLLSQAIAMQHMSLLA------VDQLGNTYLVREELKLHFSCKLRRLLLEG-DVISVEEQKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~A------vgn~GNalL~~GeLKl~~s~~Lr~lla~~-~p~s~~~~~r~~~~ld~~~~~k~~~~ 221 (360)
|.++|.+++...|..+.- +..+|..+...|....-+. .+..++.-. ..........++. .++
T Consensus 94 a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~-~~~~al~~~~~~~~~~~~~~~~~----------~lg 162 (293)
T 3u3w_A 94 IYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL-ELKKLLNQQLTGIDVYQNLYIEN----------AIA 162 (293)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHH-HHHHHHHTCCCCSCTTHHHHHHH----------HHH
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHH-HHHHHHHHhcccccHHHHHHHHH----------HHH
Confidence 677788888877776652 2347777665543332211 223333211 0110001111111 223
Q ss_pred HHHHHh--hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHh
Q 036322 222 SLLVDA--CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALF 299 (360)
Q Consensus 222 ~aL~~~--~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~ 299 (360)
.+.... -++|.+.+..|-+.+...-...+....+|+|-|.++..-+.-.+|...+.+|++-....- .....+.+|+
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--~~~~~~~~~~ 240 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--SMALIGQLYY 240 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--BCTTHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHH
Confidence 333222 255556665555544433234455667999999999998887788888888877654211 1223478999
Q ss_pred hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 300 GWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 300 NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
+-|.++..+-. .-.++.+.+++|...++
T Consensus 241 ~lg~~~~~~g~----~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 241 QRGECLRKLEY----EEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----cHHHHHHHHHHHHHHHH
Confidence 99999876542 12566667777776665
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.87 E-value=0.012 Score=58.01 Aligned_cols=162 Identities=7% Similarity=-0.039 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc-CcCChHHHhhhhhhHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM-QHMSLLAVDQLGNTYLVREELKLHFSCKLR 189 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~-~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr 189 (360)
+.+.....++.+..++.++......| +.+.|..++.++.+...+.+-- .|.-...+.|||.+|...|+
T Consensus 298 s~e~v~~~l~~a~~~le~a~~~~~qg-~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~---------- 366 (490)
T 3n71_A 298 SQEVVKEMIQFSKDTLEKIDKARSEG-LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA---------- 366 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC----------
Confidence 34566777777888887776653322 3344555555555444444332 34455666777766654322
Q ss_pred HHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccc
Q 036322 190 RLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLET 268 (360)
Q Consensus 190 ~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~ 268 (360)
-++|+.++..|-.-|..++=. .|+-..+|+|-|.++..-|.
T Consensus 367 --------------------------------------~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~ 408 (490)
T 3n71_A 367 --------------------------------------YEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH 408 (490)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC
Confidence 245667777777777777633 45667889999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHH
Q 036322 269 AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQA 326 (360)
Q Consensus 269 a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA 326 (360)
-.+|+.+|.+|.+=++.++..--++-.+.+.+-+.+..++-+. ++++.+...|
T Consensus 409 ~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~-----~~ae~~~~~~ 461 (490)
T 3n71_A 409 IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF-----RQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 9999999999999998877632222235666666665444332 3444455444
No 181
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.83 E-value=0.073 Score=49.28 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+-|..|++. ++..|+|+-|..+...+. .+=+.+|++-|+.++..+ .|+|+++.|..+..--.+. .
T Consensus 312 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~----~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~ 381 (490)
T 2xm6_A 312 REQAISWYTKSAEQ--GDATAQANLGAIYFRLGS----EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVK-K 381 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-C
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC----cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-C
Confidence 45677777777765 567899998888765321 123456666666666653 3899999999987643222 2
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+ .++|+..|+.|+.. +++.+..-|-.|-
T Consensus 382 ~-------~~~A~~~~~~A~~~--~~~~a~~~Lg~~y 409 (490)
T 2xm6_A 382 D-------EQQAAIWMRKAAEQ--GLSAAQVQLGEIY 409 (490)
T ss_dssp C-------HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 2 34566666666654 3566665555543
No 182
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.78 E-value=0.014 Score=51.02 Aligned_cols=88 Identities=16% Similarity=0.047 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhhCC--C----chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 235 LVKAGRKYRLALSIDG--N----DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp--~----d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
+.+|...|..|+++.+ + ...++.|.|.++.. +...+|...|.+|++-|... . .+.....+|+|.|..+..+
T Consensus 92 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~ 168 (307)
T 2ifu_A 92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLLVRQ 168 (307)
T ss_dssp GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHHHHc
Confidence 3445555566655522 2 24789999999988 88888888888888777531 0 0112368899999998765
Q ss_pred hhcCCCChHHHHHHHHHHHHHH
Q 036322 309 SRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~ky 330 (360)
-+ -.++...+++|+..+
T Consensus 169 g~-----~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 169 QK-----FDEAAASLQKEKSMY 185 (307)
T ss_dssp TC-----HHHHHHHHHHHHHHH
T ss_pred CC-----HHHHHHHHHHHHHHH
Confidence 43 334444444444433
No 183
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.75 E-value=0.088 Score=46.72 Aligned_cols=146 Identities=15% Similarity=0.039 Sum_probs=88.3
Q ss_pred HHHHhhhhHHHHhhhhc-CCchHHHHHH------------HHHHHHHHHHHHHcCcC-------ChHHHhhhhhhHHHHH
Q 036322 119 LTEANDLPKHAKECMKS-GWDEERAEMI------------LHKSARLLSQAIAMQHM-------SLLAVDQLGNTYLVRE 178 (360)
Q Consensus 119 v~ea~~Llk~are~~~~-~~De~~Ad~l------------L~~Aa~~~s~Al~~~P~-------s~~Avgn~GNalL~~G 178 (360)
.++|...+++|.+..+. +++.+.++.. +..|...|.+|+++.|. ...++.++|++|...|
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~ 196 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK 196 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC
Confidence 46778888888776655 3444444433 24678889999987443 3567889999999988
Q ss_pred HHHHHHHHHHHHHhc---cCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhh-----hCC
Q 036322 179 ELKLHFSCKLRRLLL---EGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALS-----IDG 250 (360)
Q Consensus 179 eLKl~~s~~Lr~lla---~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~-----~dp 250 (360)
+...-+.. +..++. ..+.+ .....+ ..+++.+.... .-+.+|.+-|..|++ .+|
T Consensus 197 ~~~~A~~~-~~~al~~~~~~~~~--~~~~~~----------~~~lg~~y~~~-----~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 197 HYDKALPH-LEAALELAMDIQND--RFIAIS----------LLNIANSYDRS-----GDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp CHHHHHHH-HHHHHHHHHHTTCH--HHHHHH----------HHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHH-HHHHHHHHHHcCCH--HHHHHH----------HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhCCh
Confidence 77644321 111121 11000 000111 11222222222 224555556666666 678
Q ss_pred CchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 251 NDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 251 ~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
....+++|.|.+....|...+|...|.+|++-
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999998888877788777777764
No 184
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.75 E-value=0.026 Score=44.74 Aligned_cols=86 Identities=13% Similarity=-0.009 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
|.+-|..|.+. ++..|.||-|..+.. +.+...|..+|..|++ .++ |+|.++.|..+..=-- .+
T Consensus 44 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-------~g~---~~a~~~Lg~~y~~G~g-~~ 110 (138)
T 1klx_A 44 LFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG-------LND---QDGCLILGYKQYAGKG-VV 110 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHTSS-SC
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc-------CCC---HHHHHHHHHHHHCCCC-CC
Confidence 45556666554 789999999999987 6676667777766654 333 8999999999876422 22
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.+ ++.|+..|+.|..+ +++.+..
T Consensus 111 ~d-------~~~A~~~~~~Aa~~--g~~~A~~ 133 (138)
T 1klx_A 111 KN-------EKQAVKTFEKACRL--GSEDACG 133 (138)
T ss_dssp CC-------HHHHHHHHHHHHHT--TCHHHHH
T ss_pred cC-------HHHHHHHHHHHHHC--CCHHHHH
Confidence 32 44567777777766 4454443
No 185
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.69 E-value=0.037 Score=54.11 Aligned_cols=129 Identities=11% Similarity=-0.021 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|..+|++|++++|+...|+.-++-+|..+ .. .. |... . .
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~------~~--------~~-~~~~-~--~-------------------- 256 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVR------HS--------QH-PLDE-K--Q-------------------- 256 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------HH--------HS-CCCH-H--H--------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------hc--------cC-CCch-h--h--------------------
Confidence 57899999999999999999999888777721 11 11 1110 0 0
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc--ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF--LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~--~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
. +-+..|.++ ..++..+|.+.. ..|++++.. .|. +.+|+.-+++|+.+.+ +..+|.--|.
T Consensus 257 -----~-~~l~~a~~a-~~a~~~~~~~a~--~~~alal~~l~~gd-------~d~A~~~l~rAl~Ln~--s~~a~~llG~ 318 (372)
T 3ly7_A 257 -----L-AALNTEIDN-IVTLPELNNLSI--IYQIKAVSALVKGK-------TDESYQAINTGIDLEM--SWLNYVLLGK 318 (372)
T ss_dssp -----H-HHHHHHHHH-HHTCGGGTTCHH--HHHHHHHHHHHHTC-------HHHHHHHHHHHHHHCC--CHHHHHHHHH
T ss_pred -----H-HHHHHHHHH-HHhcccCCcCHH--HHHHHHHHHHhCCC-------HHHHHHHHHHHHhcCC--CHHHHHHHHH
Confidence 0 011222221 134455666555 455555544 555 3556666667777632 2233322222
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
. ..+.+. +.+|+..|+.|++|+|..+.
T Consensus 319 ~----~~~~G~--------~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 319 V----YEMKGM--------NREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp H----HHHTTC--------HHHHHHHHHHHHHHSCSHHH
T ss_pred H----HHHCCC--------HHHHHHHHHHHHhcCCCcCh
Confidence 2 223443 66789999999999998863
No 186
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.63 E-value=0.071 Score=46.49 Aligned_cols=123 Identities=14% Similarity=0.003 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCcCCh-----HHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhcchhH
Q 036322 148 KSARLLSQAIAMQHMSL-----LAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFMNKDK 219 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~-----~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~~k~~ 219 (360)
.|...|.+|++..|.+. .++.++|++|...|+...-.. .++.++ +..+.+. ....+ ...
T Consensus 32 ~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~--~~~~~----------~~~ 98 (373)
T 1hz4_A 32 EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLA-LMQQTEQMARQHDVWH--YALWS----------LIQ 98 (373)
T ss_dssp HHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHTTCHH--HHHHH----------HHH
T ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHHhcCcHH--HHHHH----------HHH
Confidence 45667777787766553 278899999998888764321 122222 2221110 00000 011
Q ss_pred HHHHHHHh--hHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 220 IASLLVDA--CEECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 220 ~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
++.++... -++|.+++.+|-+.+...-.. .|....+++|.|.++...|...+|..++.+|++-.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 22222222 244455444444443322111 13445667777777777777777777777766543
No 187
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.57 E-value=0.012 Score=56.70 Aligned_cols=114 Identities=9% Similarity=-0.009 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhh--------CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 235 LVKAGRKYRLALSI--------DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 235 L~eAgrKY~~Al~~--------dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
+.+|...|..++++ .|.-...|.|-|.+....|.-.+|..++.+|.+-|++.+.-..+.--..|+|.|..+.
T Consensus 303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~ 382 (429)
T 3qwp_A 303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL 382 (429)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence 35666777788765 3444578899999998889999999999999999987765322222367999999998
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH---HHhhhhhcc
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA---LSSCMSELN 355 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A---l~~c~~el~ 355 (360)
...+ -.|++.++++|...++.++ -||.|.+++. |.+|..||+
T Consensus 383 ~~g~-----~~eA~~~~~~Al~i~~~~l--G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 383 HQGM-----FPQAMKNLRLAFDIMRVTH--GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HTTC-----HHHHHHHHHHHHHHHHHHT--CTTSHHHHHHHHHHHHHHHHHH
T ss_pred hcCC-----HHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHh
Confidence 8665 5688999999999999874 6888887766 889999886
No 188
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.52 E-value=0.2 Score=43.62 Aligned_cols=109 Identities=12% Similarity=0.027 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhCCCc----hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC-ChhHHHhhHHHHHHHhhh
Q 036322 236 VKAGRKYRLALSIDGND----VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI-YAPDALFGWAVALQQRSR 310 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d----~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~-~ap~AL~NWGlALqerA~ 310 (360)
.+|.+.|+.++...|.. ..++.+.|.++...|...+|..++.++++-... .+.. ...+++...|.++...-
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g- 307 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSDLNRNLLLLNQLYWQAG- 307 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CcchhhHHHHHHHHHHHHHHhC-
Confidence 45556677777776643 225677777777788888888888888877653 1211 22368888888876654
Q ss_pred cCCCChHHHHHHHHHHHHHHHHh----hccCCCchHHHHHHHhhhhh
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDA----LHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~A----LrLdpd~~qa~~Al~~c~~e 353 (360)
...++.+.+++|...++.. +-++ ..+.+...|..|...
T Consensus 308 ----~~~~A~~~l~~al~~~~~~g~~~~~~~-~g~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 308 ----RKSDAQRVLLDALKLANRTGFISHFVI-EGEAMAQQLRQLIQL 349 (373)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHCCCHHHHT-THHHHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHHHHHhccccHHHHHHH-ccHHHHHHHHHHHhC
Confidence 2567888888888777641 1111 225566666776543
No 189
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.43 E-value=0.014 Score=44.94 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCchhhHHhHHHhhhcccc---hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHH
Q 036322 249 DGNDVRALYNWGLALFFLET---AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQ 325 (360)
Q Consensus 249 dp~d~~ALYNWGlAL~~~~~---a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~q 325 (360)
+|++.++++.+|.+|...+. ..+|..++. +++.+ ++..+.|++..|....+.. -.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~-------~AL~~-dp~~~rA~~~lg~~~~~~g------------~y~~ 61 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLE-------QALQL-EPYNEAALSLIANDHFISF------------RFQE 61 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHHHHHTT------------CHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH-------HHHHH-CcCCHHHHHHHHHHHHHcC------------CHHH
Confidence 69999999999999987333 455555554 55554 4456999999999966543 4678
Q ss_pred HHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 326 ARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 326 A~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
|+..|+.+|..+|+++. +.+|..-+
T Consensus 62 Ai~~w~~~l~~~p~~~~-~~~i~~~I 86 (93)
T 3bee_A 62 AIDTWVLLLDSNDPNLD-RVTIIESI 86 (93)
T ss_dssp HHHHHHHHHTCCCTTCC-HHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcc-HHHHHHHH
Confidence 99999999999999543 44554444
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.31 E-value=0.03 Score=55.22 Aligned_cols=120 Identities=12% Similarity=0.019 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
++|+.++..|-..+..++-. .|+-..+|.|-|.++..-|.-.+|..++..|.+=|++.+.-..+.--..|+|.|..+..
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45555555555555444422 45666889999999999999999999999999999877663222233789999999988
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH---HHhhhhhcc
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA---LSSCMSELN 355 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A---l~~c~~el~ 355 (360)
..+ -.|++.++++|...++.++ -||.|.+.+. |.+|..|+.
T Consensus 406 ~G~-----~~eA~~~~~~Al~i~~~~l--G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 406 AGH-----IEVGHGMICKAYAILLVTH--GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp TTC-----HHHHHHHHHHHHHHHHHHT--CTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCC-----HHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHH
Confidence 754 5789999999999999875 6788777764 777877653
No 191
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.06 E-value=0.5 Score=45.38 Aligned_cols=194 Identities=13% Similarity=0.026 Sum_probs=114.0
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH-HHHHHHHHHHHHhccCCCcchHHHH-----HH
Q 036322 133 MKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE-LKLHFSCKLRRLLLEGDVISVEEQK-----RI 206 (360)
Q Consensus 133 ~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge-LKl~~s~~Lr~lla~~~p~s~~~~~-----r~ 206 (360)
+.+-+|.+.+..-+-...++++..++.+|.+..-+--.|.-|...+- +...-+ .+++.. ..+.. |+
T Consensus 35 ~~~~~D~elv~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a----~~~~~~----~~~~~~~~~~RA 106 (301)
T 3u64_A 35 FTEEDDLDLVAQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPA----QYLPED----EFEAQNEAYSRA 106 (301)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHH----HTSCGG----GHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCch----hhcchh----hHhhhhhhHHHH
Confidence 45568999998899999999999999999998766555544443322 111101 011111 00000 00
Q ss_pred ----hhhhhhhhcchhHHHHHHHH-hhHHHHHHHHHHHHHHHHHh-hhCCCchhhHHhHHHhhhc----ccchhcHHHHH
Q 036322 207 ----LKGLDYQFMNKDKIASLLVD-ACEECEELLVKAGRKYRLAL-SIDGNDVRALYNWGLALFF----LETAFDADKIF 276 (360)
Q Consensus 207 ----~~~ld~~~~~k~~~~~aL~~-~~eEaEeLL~eAgrKY~~Al-~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~ 276 (360)
.|+.+. ...+|-. .-.-|+.+-.-=.+++..++ .++|+++.+||==|++++. ......|-.+.
T Consensus 107 ~~Ly~ra~~y-------~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l 179 (301)
T 3u64_A 107 RKLYLRGARY-------ALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTV 179 (301)
T ss_dssp HHHHHHHHHH-------HHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhH
Confidence 111110 0111110 01112222111123344444 6799999999977887776 23456788888
Q ss_pred HHHHHHHHHHHhccCCC-hhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc-hHHHHHHH
Q 036322 277 SAAIDNFDAMMLKGNIY-APDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN-LQVREALS 348 (360)
Q Consensus 277 ~aA~dKY~AAl~~~n~~-ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~-~qa~~Al~ 348 (360)
..|..-.++++.+-+.+ ...|+.-.|..+..+--+-.+ .. +.|...|++||+|+|+. ..+.-...
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG-d~------ekA~~~ferAL~LnP~~~id~~v~YA 246 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG-GM------EKAHTAFEHLTRYCSAHDPDHHITYA 246 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC-CH------HHHHHHHHHHHHHCCTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC-CH------HHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 88888888888874432 345888888887766544444 23 34788999999999975 66655443
No 192
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.86 E-value=0.043 Score=53.29 Aligned_cols=113 Identities=12% Similarity=0.009 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+||+.++..|-..+..++-. .|.-..+|.|-|.+...-|.-.+|..++..|.+-|++.+.-..+.--..|+|.|..+..
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 34444444444444333321 34556889999999999999999999999999999877663222223679999999988
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
..+ -.|++.++++|...++.+ +-||.|.+.+...
T Consensus 395 qg~-----~~eA~~~~~~Al~i~~~~--lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 395 LEN-----KAAGEKALKKAIAIMEVA--HGKDHPYISEIKQ 428 (433)
T ss_dssp TTC-----HHHHHHHHHHHHHHHHHH--TCTTCHHHHHHHH
T ss_pred ccC-----HHHHHHHHHHHHHHHHHH--cCCCChHHHHHHH
Confidence 775 478999999999999986 5789999887543
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.72 E-value=0.062 Score=53.31 Aligned_cols=100 Identities=11% Similarity=-0.004 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc---hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLET---AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~---a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
-.+|-+.|..||+++|+.+.|.++=|.+|..-+. ......++.+|++=|+.++.. ++..++|+++=|.+|..+..-
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccc
Confidence 3577889999999999999999999999987322 234567899999999999886 445689999989998876421
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.|+.+...|+++|.+||.+..|-.
T Consensus 124 ----------~~~~el~~~~k~l~~d~~N~~aW~ 147 (567)
T 1dce_A 124 ----------NWARELELCARFLEADERNFHCWD 147 (567)
T ss_dssp ----------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ----------cHHHHHHHHHHHHhhccccccHHH
Confidence 256667777777777777766543
No 194
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.67 E-value=0.1 Score=49.48 Aligned_cols=169 Identities=10% Similarity=0.034 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCc--CChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 147 HKSARLLSQAIAMQH--MSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P--~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
.+|.+.|.+.|...| .+++++.-....||..|++.+-. ..|+.+.... |........++ ..++.+-
T Consensus 117 eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~-k~l~~~~~~~-~d~~~~~d~~l----------~~Laea~ 184 (310)
T 3mv2_B 117 DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS-TIFDNYTNAI-EDTVSGDNEMI----------LNLAESY 184 (310)
T ss_dssp HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHS-CHHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcC-ccccccchHHH----------HHHHHHH
Confidence 467788888888887 89999999999999988876532 2344333222 20000000111 1122232
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCC--chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc--cCCChhHHHhh
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGN--DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK--GNIYAPDALFG 300 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~--d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~--~n~~ap~AL~N 300 (360)
+.....++ -+..|..-|..+.+..|+ ....||| +....|.-.+|++.+.+..++|-..-++ .+.+.|++|.|
T Consensus 185 v~l~~g~~-~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 185 IKFATNKE-TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHTCS-TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHhCCc-cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 22222112 256677788888888887 6778999 3333688889999999777666211011 12356999977
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 301 WAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 301 WGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
-...-..+.+ .|.++++++.+++|++|-+++
T Consensus 261 ~i~l~~~lgk--------------~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 261 QITLALMQGL--------------DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHHTTC--------------TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHhCh--------------HHHHHHHHHHHhCCCChHHHH
Confidence 6544333332 345677888899999998765
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.54 E-value=0.04 Score=40.16 Aligned_cols=90 Identities=12% Similarity=0.013 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhhCCCch------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 236 VKAGRKYRLALSIDGNDV------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
.+|.+.|..|+++.+... .++++.|.++...+.-.+|...|..|++.+...-. +...+.++++.|..+..+-
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 103 (164)
T 3ro3_A 26 RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQ 103 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHh
Confidence 344445555555444322 48889999888889888899999988887763211 1123578889998877654
Q ss_pred hcCCCChHHHHHHHHHHHHHHHH
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQD 332 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ 332 (360)
. ..++.+.+++|...++.
T Consensus 104 ~-----~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 104 D-----YEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp C-----HHHHHHHHHHHHHHHHH
T ss_pred h-----HHHHHHHHHHHHHHHHH
Confidence 3 45666666666655543
No 196
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.25 E-value=0.05 Score=46.85 Aligned_cols=90 Identities=10% Similarity=0.021 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhCCCchh------hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 235 LVKAGRKYRLALSIDGNDVR------ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~------ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
+.+|...|..|+.+.+...+ +++|-|.+....|.-..|...|.+|++.++..-. .+...+.+|+|-|..+..+
T Consensus 131 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHH
Confidence 46677788888886554333 7899999988888888899999999887764211 1112357999999998776
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccC
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMN 337 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLd 337 (360)
-. ..+|+..|++||.+.
T Consensus 210 ~~------------y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 210 SR------------YEESLYQVNKAIEIS 226 (293)
T ss_dssp TC------------HHHHHHHHHHHHHHH
T ss_pred hH------------HHHHHHHHHHHHHHH
Confidence 53 344555555555544
No 197
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.22 E-value=0.59 Score=43.32 Aligned_cols=142 Identities=10% Similarity=-0.043 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH-HH--HHHHHHH---HHHhccCCCcchH---HHHHHhhhhhhhhc
Q 036322 145 ILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE-LK--LHFSCKL---RRLLLEGDVISVE---EQKRILKGLDYQFM 215 (360)
Q Consensus 145 lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge-LK--l~~s~~L---r~lla~~~p~s~~---~~~r~~~~ld~~~~ 215 (360)
.+.++.+++.++|.++|.+..|.+.-|.++..... +. .....+| ..+|.. +|-.-. .++-++..+.. .
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~-~- 160 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDL-H- 160 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-T-
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcc-c-
Confidence 46788999999999999999999999988822111 10 1122222 333333 233221 12333333321 0
Q ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh
Q 036322 216 NKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP 295 (360)
Q Consensus 216 ~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap 295 (360)
+ +.++...+..+|++||.++.|.++=|.+|...+... -..++.++++-++.++.+ ++...
T Consensus 161 -------------~-----~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~-~~~~~~eEl~~~~~aI~~-~p~n~ 220 (306)
T 3dra_A 161 -------------N-----DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA-TDNTIDEELNYVKDKIVK-CPQNP 220 (306)
T ss_dssp -------------T-----CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC-CHHHHHHHHHHHHHHHHH-CSSCH
T ss_pred -------------C-----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-hhhhHHHHHHHHHHHHHh-CCCCc
Confidence 0 124556788899999999999999999888743311 245789999999988886 44567
Q ss_pred HHHhhHHHHHHHhh
Q 036322 296 DALFGWAVALQQRS 309 (360)
Q Consensus 296 ~AL~NWGlALqerA 309 (360)
.|.++-|..|...-
T Consensus 221 SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 221 STWNYLLGIHERFD 234 (306)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhcC
Confidence 88888888876654
No 198
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.20 E-value=0.051 Score=46.77 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC--ChhHHHhhHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGND------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI--YAPDALFGWAVALQ 306 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~--~ap~AL~NWGlALq 306 (360)
+.+|-..|..|+.+.+.. ..+++|-|.+....+.-.+|...|.+|++.++.. ++. ..+.+|+|-|..+.
T Consensus 131 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~---~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---CccccchHHHHHhHHHHHH
Confidence 457777888888775543 5689999999998888888888888888777621 111 12379999999987
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHH
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~ky 330 (360)
..-. -.++...+++|+...
T Consensus 208 ~~~~-----y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 208 LDSR-----YEESLYQVNKAIEIS 226 (293)
T ss_dssp HTTC-----HHHHHHHHHHHHHHH
T ss_pred HHhh-----HHHHHHHHHHHHHHH
Confidence 6543 334444444444443
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.10 E-value=0.063 Score=40.76 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 260 GLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 260 GlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
|..+-.-+.-..|..-|.+|++.++.--. .....+++|++.|.++..+.. ++.|+..|++|+.++|+
T Consensus 12 G~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~------------~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 12 GKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGD------------LDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCC
Confidence 33333344444444455555544431000 134568999999999876553 56799999999999999
Q ss_pred chHHHHHHH
Q 036322 340 NLQVREALS 348 (360)
Q Consensus 340 ~~qa~~Al~ 348 (360)
++.++.-+.
T Consensus 79 ~~~~~~n~~ 87 (104)
T 2v5f_A 79 HQRANGNLK 87 (104)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHhhHH
Confidence 999977654
No 200
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.53 E-value=0.19 Score=39.17 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc-CC-ChhHHHhhHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG-NI-YAPDALFGWAVALQ 306 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~-n~-~ap~AL~NWGlALq 306 (360)
++|.+.+.+|-+-++. +...|....+++|-|.++...|.-.+|...|.+|++-++. .+ ++ ....++++.|..+.
T Consensus 43 ~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 43 DEARASFQALQQQAQK-SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS---LPEDPLAASANAYEVATVAL 118 (203)
T ss_dssp HHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cCccHHHHHHHHHHHHHHHH
Confidence 3444444444433322 1245677888999999988899988999999999988862 22 11 33578888888877
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye 331 (360)
.+-. ..++.+.+++|...++
T Consensus 119 ~~g~-----~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 119 HFGD-----LAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHTC-----HHHHHHHHHHHHHHHH
T ss_pred HhCC-----HHHHHHHHHHHHHHHH
Confidence 6543 3466666666665543
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.49 E-value=0.073 Score=51.20 Aligned_cols=80 Identities=13% Similarity=-0.029 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHh-hhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 229 EECEELLVKAGRKYRLAL-SIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al-~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
++|+.++..|-.-|..++ .-.|+-...|+|-|.++..-|.-.+|..+|.+|.+=++.++..--+.--++++|.+-++.+
T Consensus 346 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 346 EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 567777777777777776 3356667789999999999999999999999999999877663222234777888877665
Q ss_pred h
Q 036322 308 R 308 (360)
Q Consensus 308 r 308 (360)
+
T Consensus 426 ~ 426 (429)
T 3qwp_A 426 I 426 (429)
T ss_dssp H
T ss_pred H
Confidence 4
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.47 E-value=0.078 Score=40.71 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEG 195 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~ 195 (360)
.++.++|.+|++++|.+..|+..+|+.+...|+-+.-+.. ++.++...
T Consensus 26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~-w~~~l~~~ 73 (93)
T 3bee_A 26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDT-WVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHTCC
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhC
Confidence 3677888999999999999999999999999988865543 45566554
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.36 E-value=0.21 Score=48.48 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHh
Q 036322 229 EECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMML 288 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~ 288 (360)
++|+.++..|-.-|..++=. .|+-...|+|-|.++..-|.-.+|+.+|.+|.+=++.++.
T Consensus 357 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 45667777777777776633 4566678999999999999999999999999999987665
No 204
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.76 E-value=2.9 Score=36.73 Aligned_cols=184 Identities=8% Similarity=-0.054 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCcCChH-----------------HHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhh
Q 036322 146 LHKSARLLSQAIAMQHMSLL-----------------AVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILK 208 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~-----------------Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~ 208 (360)
..+|.+.|.+++...|.... |+.++|++|...|....-+. -+..++.-......+....+..
T Consensus 20 y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~ 98 (434)
T 4b4t_Q 20 YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLRE-FIPHSTEYMMQFAKSKTVKVLK 98 (434)
T ss_dssp HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHTHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHccchHHHHHHH
Confidence 45677888899998887654 68899999998887754221 1222221110000111111111
Q ss_pred -hhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHH
Q 036322 209 -GLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMM 287 (360)
Q Consensus 209 -~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl 287 (360)
-++. +.. ..+.-+++..++..+...+.. ....+...+++.+=|..+...|.-.+|..++.++........
T Consensus 99 ~~l~~-~~~-------~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 99 TLIEK-FEQ-------VPDSLDDQIFVCEKSIEFAKR-EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHH-HCS-------CCSCHHHHHHHHHHHHHHHHH-SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHH-HHh-------CCCCHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1100 000 001124444444444433322 223445567788888887777776677777776665443211
Q ss_pred hccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccC---CCchHHHHHHHhhhhh
Q 036322 288 LKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMN---SDNLQVREALSSCMSE 353 (360)
Q Consensus 288 ~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLd---pd~~qa~~Al~~c~~e 353 (360)
. +....+++++=|..+...- -+.+|...|++|+.+. |+.+.....+..|...
T Consensus 170 ~--~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 170 D--KPSLVDVHLLESKVYHKLR------------NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp C--STHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred c--chhHHHHHHHHHHHHHHhC------------cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 1 1223456666555543322 2445556666665553 3334444445555443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.57 E-value=1.3 Score=34.89 Aligned_cols=95 Identities=11% Similarity=-0.013 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
.-+.+|.+-|..|.+.. +..|. -|.....-..... |++=|+.+...++ |.|.++.|..+..---+
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~-------A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~- 73 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQK-------LFQYLSKACELNS---GNGCRFLGDFYENGKYV- 73 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHH-------HHHHHHHHHHTTC---HHHHHHHHHHHHHCSSS-
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHH-------HHHHHHHHHcCCC---HHHHHHHHHHHHcCCCC-
Confidence 44567777888887765 66666 4444433322222 5555555555444 89999999998753322
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+.+. ++|+..|++|... +++.+..-|..|-
T Consensus 74 ~~d~-------~~A~~~~~~Aa~~--g~~~a~~~Lg~~y 103 (138)
T 1klx_A 74 KKDL-------RKAAQYYSKACGL--NDQDGCLILGYKQ 103 (138)
T ss_dssp CCCH-------HHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CccH-------HHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 2333 4455666666554 5666666665554
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.03 E-value=0.35 Score=36.59 Aligned_cols=24 Identities=25% Similarity=0.047 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHH
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGL 261 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGl 261 (360)
|-.-|..|+.++|++..++.|.+.
T Consensus 65 A~~~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 65 ALLLTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHhhHHH
Confidence 444677888889999999888873
No 207
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.78 E-value=0.33 Score=41.01 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc---hhcHHHHHHHHHHHHHHHHhcc-CCChhHHHhhHHHHHHHh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLET---AFDADKIFSAAIDNFDAMMLKG-NIYAPDALFGWAVALQQR 308 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~---a~eAe~L~~aA~dKY~AAl~~~-n~~ap~AL~NWGlALqer 308 (360)
+.|..+-+.|..++..++...++-||.+.+|.-... -..+-.|+++-+.+ . +....+.+|.-|++.--+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHh
Confidence 455666678888888888888888887777776333 33355555554433 2 213468999999985332
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.=...|.++.+..|+++|+|.||..
T Consensus 88 ------------g~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 88 ------------KEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp ------------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------------hhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2466789999999999999999975
No 208
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=91.40 E-value=5.5 Score=38.09 Aligned_cols=145 Identities=10% Similarity=-0.121 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHH-H-HHHHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhhhcchhHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVR-E-ELKLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQFMNKDKI 220 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~-G-eLKl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~~~~k~~~ 220 (360)
+.++.+++.+++.++|.+..|...-|.++... | ... +...-+..+|.. +|-.-.. ++-++..+.. ..
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~-~EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l~~-~~----- 176 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV-SEIEYIHGSLLP-DPKNYHTWAYLHWLYSHFST-LG----- 176 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH-HHHHHHHHHTSS-CTTCHHHHHHHHHHHHHHHH-TT-----
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcc-cc-----
Confidence 67899999999999999999999999877755 3 221 111222344433 3433222 3334443321 10
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhh
Q 036322 221 ASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFG 300 (360)
Q Consensus 221 ~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~N 300 (360)
....+++.++...+..+|+.+|.++.|.++=|.+|...+....-..++.++++-++.++.+-+ ....|.++
T Consensus 177 --------~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Y 247 (349)
T 3q7a_A 177 --------RISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNY 247 (349)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred --------ccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 011467788899999999999999999999999998844322346789999999999998644 45777766
Q ss_pred HHHHHHH
Q 036322 301 WAVALQQ 307 (360)
Q Consensus 301 WGlALqe 307 (360)
-+-.|..
T Consensus 248 lr~Ll~~ 254 (349)
T 3q7a_A 248 LRGFLKH 254 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444444
No 209
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.22 E-value=0.29 Score=45.69 Aligned_cols=115 Identities=10% Similarity=-0.067 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.++|..++...|... +.+.+|..++..|+...-+. .|+.+....+|. ... + -.-.++.++..
T Consensus 119 ~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~-~l~~a~~~~d~~----~~~-----~----a~~~LG~al~~ 183 (282)
T 4f3v_A 119 ADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVID-QVKSAGKWPDKF----LAG-----A----AGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHH-HHTTGGGCSCHH----HHH-----H----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHH-HHHHhhccCCcc----cHH-----H----HHHHHHHHHHH
Confidence 456777888888899999 99999988777655543222 122211111110 000 0 00122233332
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhC--CC-chhhHHhHHHhhhcccchhcHHHHHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSID--GN-DVRALYNWGLALFFLETAFDADKIFSAAID 281 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~d--p~-d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d 281 (360)
. ..+.+|-+.|.+|++-. |. ..+|+|+=|++|..-|...+|..+|.++..
T Consensus 184 L-----G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 184 L-----ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp T-----TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-----CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 33466667888887544 66 778999999999998886666666655544
No 210
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.03 E-value=8.4 Score=44.38 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhhhC--CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 230 ECEELLVKAGRKYRLALSID--GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~d--p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+|-..|.++...|.+|++.- .+++.++|+-|.|+...|. |++|++-|.++ ..|++|++-|.++.+
T Consensus 1080 ~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~-------~kEAIdsYiKA------dD~say~eVa~~~~~ 1146 (1630)
T 1xi4_A 1080 SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGM-------VKEAIDSYIKA------DDPSSYMEVVQAANT 1146 (1630)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------HHHHHHHHHhc------CChHHHHHHHHHHHH
Confidence 33344556666777777654 6888888888888776554 77888888643 348999998888766
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
+- -++.|++.|..|...+++
T Consensus 1147 lG------------kyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1147 SG------------NWEELVKYLQMARKKARE 1166 (1630)
T ss_pred cC------------CHHHHHHHHHHHHhhccc
Confidence 54 356666777777766644
No 211
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=89.57 E-value=1.8 Score=40.95 Aligned_cols=169 Identities=11% Similarity=-0.011 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhh
Q 036322 149 SARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDAC 228 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~ 228 (360)
+...|.+.++..|.+..++..+|.+|...|....-+ +-|...+... |...+- +.-..++.+.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL-~~l~~~i~~~-~~~~~l----------------ea~~l~vqi~ 146 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSL-ETCVEGIDND-EAEGTT----------------ELLLLAIEVA 146 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTSS-CSTTHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHhccC-CCcCcH----------------HHHHHHHHHH
Confidence 456677777776777888889999998877665221 1222233322 200011 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCC----chhhHHhHHHh----hhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhh
Q 036322 229 EECEELLVKAGRKYRLALSIDGN----DVRALYNWGLA----LFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFG 300 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~----d~~ALYNWGlA----L~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~N 300 (360)
-.- -=+..|-+.++...+.+|+ +...+++=.-+ +...+...+|-.+|.+++++| +++..+..|+|
T Consensus 147 L~~-~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------p~~~~~~lLln 219 (310)
T 3mv2_B 147 LLN-NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------PTWKTQLGLLN 219 (310)
T ss_dssp HHT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS------CSHHHHHHHHH
T ss_pred HHC-CCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC------CCcccHHHHHH
Confidence 000 0023444455666777884 34455543323 222345666777777766665 22334677777
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhcc---CCCchHHHHHHHhh
Q 036322 301 WAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHM---NSDNLQVREALSSC 350 (360)
Q Consensus 301 WGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrL---dpd~~qa~~Al~~c 350 (360)
+.++-+.-.|++++|++....|=+.=+. +|++++++.-+.-|
T Consensus 220 --------~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 220 --------LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp --------HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred --------HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 2233333456666766555554332222 69999999444333
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=89.03 E-value=15 Score=35.93 Aligned_cols=99 Identities=8% Similarity=-0.009 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc--ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFF--LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~--~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+-+.+|-.-|.+|+++||+...|+-.=+++-.. .........+ .+....++++... .....++...+++++.....
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~-~~l~~a~~a~~a~-~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQL-AALNTEIDNIVTL-PELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHTC-GGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhH-HHHHHHHHHHHhc-ccCCcCHHHHHHHHHHHHhC
Confidence 346788889999999999999888742222221 1111112222 2233444443332 11124677777777766543
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
+ -+.+|+..+++||.|||+ ..+.
T Consensus 291 --g--------d~d~A~~~l~rAl~Ln~s-~~a~ 313 (372)
T 3ly7_A 291 --G--------KTDESYQAINTGIDLEMS-WLNY 313 (372)
T ss_dssp --T--------CHHHHHHHHHHHHHHCCC-HHHH
T ss_pred --C--------CHHHHHHHHHHHHhcCCC-HHHH
Confidence 2 256778888888999975 4443
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=85.45 E-value=2.6 Score=40.46 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=51.6
Q ss_pred HHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 280 IDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 280 ~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
.++|++++..++...+++||=-|+++...+.+.++ .=.+..++++|+..+++||.|||+..+
T Consensus 137 ~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~g-g~~Al~~l~~A~a~lerAleLDP~~~~ 198 (301)
T 3u64_A 137 EQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPL-GSALPDTVHAAVMMLERACDLWPSYQE 198 (301)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred hhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCC-ChHHHHhHHHHHHHHHHHHHhCCCccc
Confidence 46788888888888899999999999998887433 245778999999999999999999443
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=74.99 E-value=14 Score=31.91 Aligned_cols=34 Identities=12% Similarity=-0.081 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHH
Q 036322 142 AEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYL 175 (360)
Q Consensus 142 Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL 175 (360)
+...|..+-+.|..+++.+|.+.++..|+|.+|.
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv 43 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV 43 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence 3456778888999999999999999999998876
No 215
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.46 E-value=49 Score=28.91 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCc------CChHHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhcch
Q 036322 147 HKSARLLSQAIAMQH------MSLLAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFMNK 217 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P------~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~~k 217 (360)
..+.++|.+++...+ ....+..++|+.|...|+...-+. -|..++ ...+. +
T Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~l~~~~~~~~~~~~-------------------~ 171 (434)
T 4b4t_Q 112 DDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA-LINDLLREFKKLDD-------------------K 171 (434)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSSC-------------------S
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH-HHHHHHHHHHhccc-------------------c
Confidence 456666777766533 335688899999999887654321 122222 11111 1
Q ss_pred hHHHHHHHHhhHHH--HHHHHHHHHHHHHHhhhCCCchh-------hHHhHHHhhhcccchhcHHHHHHHHHHHHHHH
Q 036322 218 DKIASLLVDACEEC--EELLVKAGRKYRLALSIDGNDVR-------ALYNWGLALFFLETAFDADKIFSAAIDNFDAM 286 (360)
Q Consensus 218 ~~~~~aL~~~~eEa--EeLL~eAgrKY~~Al~~dp~d~~-------ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AA 286 (360)
.....++...+.-+ -.-+..|-.-|..|+.+.+.... .+.+=|.....-+.-.+|...|.+|++.|...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~ 249 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL 249 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 11111222111111 12345566666777666443222 22233333333677788888999998888743
No 216
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=58.63 E-value=1.3e+02 Score=30.83 Aligned_cols=33 Identities=9% Similarity=-0.122 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL 180 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL 180 (360)
.....|++||...|..++....++.-+..+|.+
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH
Confidence 455789999999999999999999877777765
No 217
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.48 E-value=26 Score=30.39 Aligned_cols=91 Identities=11% Similarity=0.100 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
...-++|..=+. +.-..++-||.+.+|.- +.+-..+-.|+++-+. ..+....+-||.-+++.--+-
T Consensus 23 ~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~--- 91 (144)
T 1y8m_A 23 EILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLG--- 91 (144)
T ss_dssp HHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhh---
Confidence 334446655422 34455565555555544 4444445556655443 244456799999988853222
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
=...|.++-+..|+++|+|.||+.=
T Consensus 92 ---------~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 92 ---------EYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp ---------CHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred ---------hHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3566788889999999999999753
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=51.61 E-value=20 Score=34.49 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=21.8
Q ss_pred HHHHHHc--CcCChHHHhhhhhhHHHHHHHHHH
Q 036322 153 LSQAIAM--QHMSLLAVDQLGNTYLVREELKLH 183 (360)
Q Consensus 153 ~s~Al~~--~P~s~~Avgn~GNalL~~GeLKl~ 183 (360)
|..|+++ ...+....-+||..++..|++...
T Consensus 668 ~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A 700 (814)
T 3mkq_A 668 LTLARDLLTDESAEMKWRALGDASLQRFNFKLA 700 (814)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHH
Confidence 4444443 556777788899999988887754
No 219
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=48.77 E-value=26 Score=34.93 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHH
Q 036322 164 LLAVDQLGNTYLVREELKLHFSC 186 (360)
Q Consensus 164 ~~Avgn~GNalL~~GeLKl~~s~ 186 (360)
+++..++|.+++..|+++.-+..
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIds 54 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDS 54 (449)
T ss_dssp -----------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHH
Confidence 45888889888888887755443
No 220
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=48.42 E-value=2.4e+02 Score=28.89 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH-HHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHH
Q 036322 145 ILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL-RRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 145 lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L-r~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
+-..-+..|+.+|..+|.|..+...+.+.+...|.+.. .+.+ ..+|.. -|.+..-|-.-+.- +.+..+ .
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~--aR~vyEraL~~-fP~~~~lW~~Yi~~-E~~~~~------~ 116 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQ--VYETFDKLHDR-FPLMANIWCMRLSL-EFDKME------E 116 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHH-CTTCHHHHHHHHHH-HHTC--------C
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHH-CCCCHHHHHHHHHH-HHhhCC------c
Confidence 33445678999999999999999999888776654432 2222 222322 35555555544321 111000 0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCC--CchhhHHhHHHhhhc---ccc----hhcHHHHHHHHHHHHHHHHh-ccCCC
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDG--NDVRALYNWGLALFF---LET----AFDADKIFSAAIDNFDAMML-KGNIY 293 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp--~d~~ALYNWGlAL~~---~~~----a~eAe~L~~aA~dKY~AAl~-~~n~~ 293 (360)
.-...+-.-|.+|+...| .+++ -|-.-|.+ ... ..++.....+ -|+.|+. ++.+.
T Consensus 117 ---------~~~~~v~~lfeRal~~~~~~~sv~---LW~~Yl~f~~~~~~~~~~~~~~r~~vr~---~FErAl~~vG~~d 181 (679)
T 4e6h_A 117 ---------LDAAVIEPVLARCLSKELGNNDLS---LWLSYITYVRKKNDIITGGEEARNIVIQ---AFQVVVDKCAIFE 181 (679)
T ss_dssp ---------CCHHHHHHHHHHHTCSSSCCCCHH---HHHHHHHHHHHHSCSTTTHHHHHHHHHH---HHHHHHHHTTTTC
T ss_pred ---------chHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHHhcccccccchhHHHHHH---HHHHHHHHhCccc
Confidence 003445557888888885 4555 36666655 111 1334433333 3444444 23211
Q ss_pred hhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 036322 294 APDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHM 336 (360)
Q Consensus 294 ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrL 336 (360)
|+.---|-..+.-.-+..+.+.-|...-+..+...|+.||.+
T Consensus 182 -~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 182 -PKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp -SSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred -ccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 233335666665544444554445555588899999999986
No 221
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=47.77 E-value=38 Score=29.06 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=54.3
Q ss_pred HHHHHHHhhhCCCchhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 239 GRKYRLALSIDGNDVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 239 grKY~~Al~~dp~d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
-++|..=+ ...=.+++-+|.+.+|.- +.+-..+-.|++.-+. ..+....+-||.-+++.--
T Consensus 27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yk-------- 90 (134)
T 3o48_A 27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYK-------- 90 (134)
T ss_dssp HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHH--------
Confidence 34665543 222245666665555544 3344445566654442 2333457889999888543
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
..=...|.++-+..|+++|+|.||+.
T Consensus 91 ----lgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 91 ----LGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp ----HTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ----hhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 33466788899999999999999975
No 222
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=44.21 E-value=33 Score=33.48 Aligned_cols=51 Identities=27% Similarity=0.212 Sum_probs=26.9
Q ss_pred ccchHHHHHHHHHHhhhhHHHHhhh-hcCCchHHHHHHHHHHHHHHHHHHHc
Q 036322 109 FIDDVMFDRYLTEANDLPKHAKECM-KSGWDEERAEMILHKSARLLSQAIAM 159 (360)
Q Consensus 109 ~~d~~~f~~~v~ea~~Llk~are~~-~~~~De~~Ad~lL~~Aa~~~s~Al~~ 159 (360)
..+.+++.|-+..|..-|=-|.|.. +||-.++.-...|+.+-+++.+|-++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (494)
T 1y4c_A 413 GGGEEQLKRALKRADRNLWAAQELAKKGGGGEELLKQALQQAQQLLRQAQEL 464 (494)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhhhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666665555554444443 23444444455555566666555554
No 223
>4hb1_A DHP1; designed helical bundle; 2.90A {Synthetic construct} SCOP: k.8.1.1
Probab=38.63 E-value=55 Score=26.87 Aligned_cols=48 Identities=29% Similarity=0.399 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc
Q 036322 112 DVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM 159 (360)
Q Consensus 112 ~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~ 159 (360)
.+.+..-+..|..||++|.|..+.|-.++.-...|..+-+++.+|-++
T Consensus 3 eellkqalqqaqqllqqaqelakkgggeellkqalqqaqqllqqaqel 50 (108)
T 4hb1_A 3 EELLKQALQQAQQLLQQAQELAKKGGGEELLKQALQQAQQLLQQAQEL 50 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 355777888999999999999999999998888999999999999887
No 224
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=37.35 E-value=84 Score=26.78 Aligned_cols=61 Identities=16% Similarity=0.050 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHH---------HHHHcCcCChHHHhhhhhhHH
Q 036322 115 FDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLS---------QAIAMQHMSLLAVDQLGNTYL 175 (360)
Q Consensus 115 f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s---------~Al~~~P~s~~Avgn~GNalL 175 (360)
...+..-++.|+..+|.-.....|++.-++||..|-.+.. +.++.+|.|+.+..+|-.|--
T Consensus 46 ak~iAr~a~~Li~~~K~eAd~seDp~~~~rLl~AAk~La~At~~MVeaAK~~A~NP~d~~~q~~Lr~Aae 115 (131)
T 2l7a_A 46 ARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAE 115 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4555667888888888877888999998998876555543 456679999998888875543
No 225
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=34.82 E-value=2.1e+02 Score=24.21 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=45.2
Q ss_pred hhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 036322 124 DLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEG 195 (360)
Q Consensus 124 ~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~ 195 (360)
..+.+|...+.+.+ ..+-.+|..+.+.++.+...+|.--...-.+.+++....++ +.+|+..+..-
T Consensus 52 ~~~~~a~~~L~~~e--~~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~----~~~L~~y~~~l 117 (175)
T 4abx_A 52 QAAAGGVELLSDGD--LNAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAI----AGELRDVAEGS 117 (175)
T ss_dssp HHHHHHHHHHTTSS--SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCc--chHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH----HHHHHHHHHcC
Confidence 33445555555532 25777899999999999999987667777788887765444 45666655554
No 226
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=30.34 E-value=54 Score=27.81 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCC
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMS 163 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s 163 (360)
++.-+..++.-|..|+++|+.+..-|+. +.|=.++-+.+.++...|--.|+=
T Consensus 29 ~~i~l~~ylrta~~llr~A~~y~~egd~-e~AYily~R~~~L~~e~IpkHpdy 80 (146)
T 2xze_A 29 EDIPPRRYFRSGVEIIRMASIYSEEGNI-EHAFILYNKYITLFIEKLPKHRDY 80 (146)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHTTGGGSTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHcccCccc
Confidence 4445899999999999999999888765 778888888888887777665543
No 227
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.67 E-value=92 Score=25.56 Aligned_cols=36 Identities=11% Similarity=0.294 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
.|+..+-.+|+.+|-.+++..+.++..+..|..-+.
T Consensus 35 ~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~ 70 (117)
T 2cpt_A 35 EEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCT 70 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 566677777777777777777666666666655433
No 228
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=24.19 E-value=1.8e+02 Score=28.94 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc--ccchhcHHHHH
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFF--LETAFDADKIF 276 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~--~~~a~eAe~L~ 276 (360)
-+.+|..-+..++.++|--+.+++.-|++.+. |+-..+.-++|
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 36778889999999999999999999999998 66555554444
No 229
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.63 E-value=5.5e+02 Score=24.72 Aligned_cols=88 Identities=14% Similarity=-0.080 Sum_probs=57.7
Q ss_pred CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhh-----HHHHHH
Q 036322 160 QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDAC-----EECEEL 234 (360)
Q Consensus 160 ~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~-----eEaEeL 234 (360)
+-++++|...|=.-++..|+=-..+.+.|-.+++... |+.. ++...++-+..+.+ -||+=.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edi------------g~a~--p~a~~~~~~~~~~~~~~g~pe~~~~ 332 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDV------------GNAD--PRAMQVAIAAWDCFTRVGPAEGERA 332 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT------------GGGC--THHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------------cCCC--hhHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3456666666666777777766667776654444432 2222 34444555555555 478888
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
|.+|.=.-..| |-+..+|-.|.-|+.+
T Consensus 333 l~~~~~~la~~----pksn~~~~a~~~a~~~ 359 (447)
T 3pvs_A 333 IAQAIVYLACA----PKSNAVYTAFKAALAD 359 (447)
T ss_dssp HHHHHHHHHHS----CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CcchHHHHHHHHHHHH
Confidence 88888765555 8899999999999988
No 230
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.32 E-value=2.9e+02 Score=21.44 Aligned_cols=70 Identities=21% Similarity=0.094 Sum_probs=0.0
Q ss_pred cCCCCCcccchHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc--CcCChHHHhhhhhhHHHHHH
Q 036322 102 SSSSSSKFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM--QHMSLLAVDQLGNTYLVREE 179 (360)
Q Consensus 102 ~~~~s~~~~d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~--~P~s~~Avgn~GNalL~~Ge 179 (360)
++++|+.. .+++.|..|+++|-++=+. -+.+.|=.+-..|++.|-.++.. +|..-..+-.=-+-|+.|.|
T Consensus 2 ~~~~~~~~-------~~l~~Ai~lv~~Ave~D~~-g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE 73 (93)
T 1wfd_A 2 SSGSSGQD-------SDSTAAVAVLKRAVELDAE-SRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAE 73 (93)
T ss_dssp CSCSSCCC-------CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccch-------HHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
No 231
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=20.38 E-value=2.5e+02 Score=23.14 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc-----CcCChHHHhhhh
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM-----QHMSLLAVDQLG 171 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~-----~P~s~~Avgn~G 171 (360)
+-+.++..+..|..-|+.|+..+..| +...|=-..++|++++-+|+=+ -|-.|.....+.
T Consensus 5 ~~ee~~~wl~~A~~dl~~A~~~~~~g-~y~~a~F~aqQA~Ek~lKa~L~~~~g~~p~~H~l~~L~~ 69 (141)
T 3o10_A 5 NPVEARRWLRQARANFSAARNDLHKN-ANEWVCFKCYLSTKLALIAADYAVRGKSDKDVKPTALAQ 69 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGTTTT-CHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTSCHHHHHH
T ss_pred ChHHHHHHHHHHHhhhhHHhhHHhhC-ccceEeeehhHHHHHHHHHHHHHhcCCCcccCCcHHHHH
Confidence 56779999999999999999998876 4666777788899888888632 355555444333
Done!