BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036323
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 46/207 (22%)
Query: 211 ISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK----ATIEELEGS 266
+++ GM G GK+ LA A D+ ++ C S ++ K + +L+
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 267 AIDLHELNSLLRRIGANIAGQK-------------FFMVLDNLWTDDYRKWEPFRNCLMN 313
+ L + S +R+ NI K ++LD++W D + F N
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAFDN---- 256
Query: 314 GLRGSKILITTRKETVA-RMMESTDIVYVQ-GLSE---LECWSLFRRFALSGRTPSECDQ 368
+IL+TTR ++V +M +V V+ GL LE SLF + +
Sbjct: 257 ---QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--------KKED 305
Query: 369 LEGIGRGIVRKCKGLPLAAKTIGSLLQ 395
L I+++CKG PL IG+LL+
Sbjct: 306 LPAEAHSIIKECKGSPLVVSLIGALLR 332
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 46/207 (22%)
Query: 211 ISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK----ATIEELEGS 266
+++ GM G GK+ LA A D+ ++ C S ++ K + +L+
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 267 AIDLHELNSLLRRIGANIAGQK-------------FFMVLDNLWTDDYRKWEPFRNCLMN 313
+ L + S +R+ NI K ++LD++W D + F N
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAFDN---- 263
Query: 314 GLRGSKILITTRKETVA-RMMESTDIVYVQ-GLSE---LECWSLFRRFALSGRTPSECDQ 368
+IL+TT ++V +M +V V+ GL LE SLF + +
Sbjct: 264 ---QCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--------KKED 312
Query: 369 LEGIGRGIVRKCKGLPLAAKTIGSLLQ 395
L I+++CKG PL IG+LL+
Sbjct: 313 LPAEAHSIIKECKGSPLVVSLIGALLR 339
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 80/207 (38%), Gaps = 46/207 (22%)
Query: 211 ISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK----ATIEELEGS 266
+++ GM G GK+ LA A D+ ++ C +V K + +L+
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEG-------CFPGGVHWVSVGKQDKSGLLMKLQNL 202
Query: 267 AIDLHELNSLLRRIGANIAGQK-------------FFMVLDNLWTDDYRKWEPFRNCLMN 313
L + S +R+ NI K ++LD++W W L
Sbjct: 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKA 253
Query: 314 GLRGSKILITTRKETVA-RMMESTDIVYVQGL----SELECWSLFRRFALSGRTPSECDQ 368
+IL+TTR ++V +M +V V+ LE SLF P +
Sbjct: 254 FDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQ--- 309
Query: 369 LEGIGRGIVRKCKGLPLAAKTIGSLLQ 395
I+++CKG PL IG+LL+
Sbjct: 310 ----AHSIIKECKGSPLVVSLIGALLR 332
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 46/207 (22%)
Query: 211 ISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK----ATIEELEGS 266
+++ GM G GK+ LA A D+ ++ C +V K + +L+
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEG-------CFPGGVHWVSVGKQDKSGLLMKLQNL 208
Query: 267 AIDLHELNSLLRRIGANIAGQK-------------FFMVLDNLWTDDYRKWEPFRNCLMN 313
L + S +R+ NI K ++LD++W D + F +
Sbjct: 209 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLKAFDS---- 262
Query: 314 GLRGSKILITTRKETVA-RMMESTDIVYVQGL----SELECWSLFRRFALSGRTPSECDQ 368
+IL+TTR ++V +M +V V+ LE SLF P +
Sbjct: 263 ---QCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQ--- 315
Query: 369 LEGIGRGIVRKCKGLPLAAKTIGSLLQ 395
I+++CKG PL IG+LL+
Sbjct: 316 ----AHSIIKECKGSPLVVSLIGALLR 338
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 8 AVLEQLISVAAKEANEGVRLAVGVGQEVEKLKRNFQAIQAVLHDAEH--RQVREEGVRLW 65
A + LI + E +L GV + +E L + ++ A L R+ + +LW
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLW 60
Query: 66 LDQLKDASYNMEDVLDEWITARLKRQTEGVDHDN 99
D++++ SY +EDV+D+++ Q +G+ D+
Sbjct: 61 ADEVRELSYVIEDVVDKFLV-----QVDGIKSDD 89
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 210 IISMVGMGGIGKTTL-AQLAYNDNDVINNFEIRVRVCVSDPFDEFNVA-KATIEELEGSA 267
+I ++G GG+GKTT+ A +A D+ F+ V + SDP ++ ++ L+ S
Sbjct: 329 LIMLMGKGGVGKTTMAAAIAVRLADM--GFD--VHLTTSDPAAHLSMTLNGSLNNLQVSR 384
Query: 268 IDLHE 272
ID HE
Sbjct: 385 IDPHE 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,995,055
Number of Sequences: 62578
Number of extensions: 638908
Number of successful extensions: 1789
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1780
Number of HSP's gapped (non-prelim): 15
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)