Query 036323
Match_columns 583
No_of_seqs 435 out of 3097
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 11:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.2E-72 1.8E-76 619.8 38.6 535 4-578 3-556 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 4.1E-46 8.8E-51 374.5 10.8 278 185-470 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 1E-39 2.2E-44 381.8 28.9 361 177-577 181-568 (1153)
4 PRK04841 transcriptional regul 99.6 1.3E-14 2.8E-19 169.0 23.8 295 177-520 11-332 (903)
5 PRK00411 cdc6 cell division co 99.5 1.8E-12 4E-17 136.2 25.8 320 175-511 25-376 (394)
6 COG2909 MalT ATP-dependent tra 99.4 2.1E-11 4.5E-16 130.9 21.4 301 176-522 15-340 (894)
7 TIGR02928 orc1/cdc6 family rep 99.4 8.5E-11 1.8E-15 122.3 25.1 306 176-496 11-351 (365)
8 TIGR03015 pepcterm_ATPase puta 99.4 6.3E-11 1.4E-15 117.7 20.9 182 208-394 43-242 (269)
9 TIGR00635 ruvB Holliday juncti 99.4 3.9E-11 8.5E-16 121.5 19.0 268 180-494 4-288 (305)
10 PRK00080 ruvB Holliday junctio 99.3 2.6E-11 5.6E-16 123.8 16.1 279 178-495 23-310 (328)
11 PF01637 Arch_ATPase: Archaeal 99.3 4.9E-12 1.1E-16 122.6 9.6 195 182-389 1-233 (234)
12 COG3899 Predicted ATPase [Gene 99.2 1.5E-10 3.3E-15 130.9 17.3 314 181-519 1-385 (849)
13 PF05729 NACHT: NACHT domain 99.1 5.3E-10 1.1E-14 102.2 11.9 144 209-357 1-163 (166)
14 PTZ00112 origin recognition co 99.0 3.6E-08 7.8E-13 107.3 22.1 307 177-495 752-1086(1164)
15 PRK06893 DNA replication initi 98.9 1.2E-08 2.6E-13 98.5 13.6 156 208-394 39-207 (229)
16 PRK13342 recombination factor 98.9 2.3E-08 5E-13 105.3 13.5 179 179-392 11-198 (413)
17 COG2256 MGS1 ATPase related to 98.9 1.5E-08 3.3E-13 100.7 11.1 153 206-385 46-207 (436)
18 TIGR03420 DnaA_homol_Hda DnaA 98.8 4.7E-08 1E-12 94.4 13.3 171 185-393 22-204 (226)
19 PRK07003 DNA polymerase III su 98.8 1.9E-07 4.2E-12 101.2 18.7 196 179-391 15-222 (830)
20 PRK04195 replication factor C 98.8 6.1E-07 1.3E-11 96.4 21.4 248 179-469 13-271 (482)
21 PF13191 AAA_16: AAA ATPase do 98.8 9.6E-09 2.1E-13 95.8 6.5 48 181-232 1-48 (185)
22 PF13401 AAA_22: AAA domain; P 98.8 1.6E-08 3.4E-13 88.6 7.4 118 207-326 3-125 (131)
23 PRK14961 DNA polymerase III su 98.8 2.3E-07 5E-12 95.9 17.2 193 179-388 15-218 (363)
24 PRK12402 replication factor C 98.8 1.7E-07 3.8E-12 96.3 15.8 199 179-389 14-225 (337)
25 PRK05564 DNA polymerase III su 98.7 3.5E-07 7.7E-12 92.7 16.5 178 180-388 4-188 (313)
26 PRK14949 DNA polymerase III su 98.7 2.8E-07 6.2E-12 101.8 16.4 195 179-390 15-220 (944)
27 PRK14963 DNA polymerase III su 98.7 5E-08 1.1E-12 104.2 10.2 197 180-387 14-214 (504)
28 PRK12323 DNA polymerase III su 98.7 2.6E-07 5.5E-12 99.0 14.8 197 179-390 15-225 (700)
29 PRK14960 DNA polymerase III su 98.7 4.4E-07 9.5E-12 97.5 16.2 194 179-389 14-218 (702)
30 PRK14957 DNA polymerase III su 98.7 4.6E-07 1E-11 97.0 15.8 184 179-390 15-221 (546)
31 PF05496 RuvB_N: Holliday junc 98.7 2.8E-07 6E-12 85.9 12.2 182 179-394 23-225 (233)
32 COG3903 Predicted ATPase [Gene 98.7 4.4E-08 9.5E-13 98.1 7.2 270 206-494 12-291 (414)
33 PTZ00202 tuzin; Provisional 98.7 1.1E-06 2.4E-11 89.2 17.0 172 173-357 255-434 (550)
34 PRK06645 DNA polymerase III su 98.7 9E-07 2E-11 94.2 17.3 194 180-387 21-226 (507)
35 PRK00440 rfc replication facto 98.6 9.5E-07 2.1E-11 90.0 16.4 182 179-388 16-201 (319)
36 cd00009 AAA The AAA+ (ATPases 98.6 2.5E-07 5.5E-12 82.2 10.7 125 183-328 1-131 (151)
37 PLN03025 replication factor C 98.6 5.9E-07 1.3E-11 91.3 14.1 183 179-387 12-197 (319)
38 KOG2028 ATPase related to the 98.6 9.1E-07 2E-11 86.6 14.3 158 206-385 160-331 (554)
39 COG1474 CDC6 Cdc6-related prot 98.6 2.1E-06 4.6E-11 88.0 17.7 177 179-358 16-204 (366)
40 PRK14962 DNA polymerase III su 98.6 1.2E-06 2.6E-11 92.9 16.0 202 179-408 13-240 (472)
41 PRK08903 DnaA regulatory inact 98.6 9.5E-07 2E-11 85.3 14.0 153 207-394 41-203 (227)
42 PRK14956 DNA polymerase III su 98.6 4.4E-07 9.6E-12 94.7 12.3 193 179-388 17-220 (484)
43 TIGR02397 dnaX_nterm DNA polym 98.6 2.3E-06 5.1E-11 88.6 17.7 184 179-391 13-219 (355)
44 PRK07994 DNA polymerase III su 98.6 1.1E-06 2.5E-11 95.5 15.5 195 179-390 15-220 (647)
45 PRK14964 DNA polymerase III su 98.6 1.6E-06 3.5E-11 91.6 16.2 182 179-388 12-215 (491)
46 PF13173 AAA_14: AAA domain 98.6 2.8E-07 6E-12 80.4 8.7 119 208-348 2-126 (128)
47 PRK13341 recombination factor 98.6 5.8E-07 1.3E-11 99.7 13.1 172 180-385 28-212 (725)
48 TIGR02903 spore_lon_C ATP-depe 98.6 1.3E-06 2.7E-11 96.1 15.5 203 180-393 154-398 (615)
49 PRK08691 DNA polymerase III su 98.6 1.2E-06 2.7E-11 94.9 15.1 195 179-390 15-220 (709)
50 PRK09112 DNA polymerase III su 98.5 1.6E-06 3.6E-11 88.5 14.9 198 178-391 21-241 (351)
51 PF05621 TniB: Bacterial TniB 98.5 2.9E-06 6.3E-11 82.9 15.7 197 187-388 44-259 (302)
52 PRK14951 DNA polymerase III su 98.5 1.8E-06 3.9E-11 93.8 15.9 198 179-390 15-225 (618)
53 PRK08727 hypothetical protein; 98.5 2.7E-06 5.9E-11 82.2 15.6 149 208-387 41-201 (233)
54 PRK08084 DNA replication initi 98.5 2.2E-06 4.7E-11 83.0 14.9 155 208-393 45-212 (235)
55 TIGR00678 holB DNA polymerase 98.5 3.1E-06 6.7E-11 79.1 14.7 91 286-386 95-187 (188)
56 PRK07471 DNA polymerase III su 98.5 3.8E-06 8.3E-11 86.2 16.6 197 179-390 18-238 (365)
57 PRK14955 DNA polymerase III su 98.5 1.8E-06 3.9E-11 90.4 14.2 200 179-389 15-227 (397)
58 PRK07940 DNA polymerase III su 98.5 3.1E-06 6.7E-11 87.7 15.7 194 180-390 5-213 (394)
59 PRK05642 DNA replication initi 98.5 2.6E-06 5.6E-11 82.4 14.2 156 208-394 45-212 (234)
60 PRK09087 hypothetical protein; 98.5 2.9E-06 6.3E-11 81.4 14.4 143 208-391 44-196 (226)
61 PRK14958 DNA polymerase III su 98.5 2.3E-06 5.1E-11 91.7 15.1 183 179-389 15-219 (509)
62 PRK05896 DNA polymerase III su 98.5 1.4E-06 3E-11 93.5 13.2 197 179-392 15-223 (605)
63 PRK14969 DNA polymerase III su 98.5 2.7E-06 5.9E-11 91.8 14.8 184 179-390 15-221 (527)
64 PRK09111 DNA polymerase III su 98.5 4.7E-06 1E-10 90.7 16.5 199 179-391 23-234 (598)
65 PRK14950 DNA polymerase III su 98.4 2.6E-06 5.6E-11 93.5 14.4 196 179-390 15-221 (585)
66 PRK07764 DNA polymerase III su 98.4 4.7E-06 1E-10 93.8 16.3 191 180-387 15-218 (824)
67 cd01128 rho_factor Transcripti 98.4 5.7E-07 1.2E-11 87.2 7.6 90 207-297 15-113 (249)
68 PF00308 Bac_DnaA: Bacterial d 98.4 6.8E-06 1.5E-10 78.5 14.4 162 207-390 33-208 (219)
69 PRK14959 DNA polymerase III su 98.4 6.3E-06 1.4E-10 89.0 15.6 198 180-394 16-225 (624)
70 PRK14970 DNA polymerase III su 98.4 8.6E-06 1.9E-10 84.7 16.1 182 179-387 16-206 (367)
71 PRK14952 DNA polymerase III su 98.4 1E-05 2.2E-10 87.7 16.9 195 179-390 12-220 (584)
72 PRK14954 DNA polymerase III su 98.4 8.1E-06 1.8E-10 89.0 16.2 197 179-385 15-223 (620)
73 TIGR01242 26Sp45 26S proteasom 98.3 7E-06 1.5E-10 85.1 13.9 182 177-384 119-328 (364)
74 PRK14087 dnaA chromosomal repl 98.3 1.6E-05 3.4E-10 84.3 16.3 170 208-393 141-322 (450)
75 PRK07133 DNA polymerase III su 98.3 1.9E-05 4.1E-10 86.7 16.7 191 179-387 17-216 (725)
76 PRK14953 DNA polymerase III su 98.3 2.8E-05 6E-10 83.0 17.5 184 180-391 16-221 (486)
77 TIGR03345 VI_ClpV1 type VI sec 98.3 1.5E-05 3.2E-10 90.8 15.4 183 180-385 187-391 (852)
78 PRK08451 DNA polymerase III su 98.3 3.6E-05 7.9E-10 82.2 17.2 195 179-390 13-218 (535)
79 PRK14965 DNA polymerase III su 98.2 3.6E-05 7.9E-10 84.1 17.3 195 179-390 15-221 (576)
80 KOG2227 Pre-initiation complex 98.2 3.3E-05 7.2E-10 78.6 15.3 178 178-358 148-339 (529)
81 PRK14971 DNA polymerase III su 98.2 3.4E-05 7.4E-10 84.6 16.7 180 179-387 16-219 (614)
82 PRK06305 DNA polymerase III su 98.2 3.2E-05 7E-10 81.9 16.0 183 179-390 16-223 (451)
83 PF14516 AAA_35: AAA-like doma 98.2 0.00011 2.5E-09 74.9 19.0 203 177-397 8-246 (331)
84 TIGR02639 ClpA ATP-dependent C 98.2 1.6E-05 3.6E-10 89.7 14.0 155 180-357 182-358 (731)
85 PRK09376 rho transcription ter 98.2 2.8E-06 6E-11 86.0 6.8 90 207-297 168-266 (416)
86 PRK14948 DNA polymerase III su 98.2 5.6E-05 1.2E-09 83.0 17.3 196 180-390 16-222 (620)
87 PRK06647 DNA polymerase III su 98.2 6.9E-05 1.5E-09 81.4 17.5 194 179-389 15-219 (563)
88 TIGR00362 DnaA chromosomal rep 98.2 7.5E-05 1.6E-09 78.7 17.5 160 208-389 136-309 (405)
89 PHA02544 44 clamp loader, smal 98.2 3.1E-05 6.8E-10 78.8 14.2 150 178-355 19-171 (316)
90 COG2255 RuvB Holliday junction 98.1 4.9E-05 1.1E-09 72.7 13.7 269 179-498 25-314 (332)
91 PRK06620 hypothetical protein; 98.1 2.8E-05 6.1E-10 73.9 12.3 135 209-388 45-187 (214)
92 PF05673 DUF815: Protein of un 98.1 3.3E-05 7.1E-10 73.2 12.1 130 173-330 20-154 (249)
93 PRK14088 dnaA chromosomal repl 98.1 0.0001 2.2E-09 78.1 16.9 161 208-389 130-304 (440)
94 PRK11331 5-methylcytosine-spec 98.1 1.5E-05 3.3E-10 82.5 10.3 120 179-311 174-297 (459)
95 CHL00181 cbbX CbbX; Provisiona 98.1 0.00019 4.2E-09 71.4 17.5 136 208-359 59-211 (287)
96 PRK03992 proteasome-activating 98.1 5.6E-05 1.2E-09 78.9 14.1 161 177-358 128-316 (389)
97 PRK00149 dnaA chromosomal repl 98.1 0.00012 2.7E-09 78.1 16.9 160 207-388 147-320 (450)
98 TIGR00767 rho transcription te 98.1 9.8E-06 2.1E-10 82.5 7.8 90 207-297 167-265 (415)
99 CHL00095 clpC Clp protease ATP 98.1 2.9E-05 6.4E-10 88.8 12.5 154 180-355 179-352 (821)
100 TIGR02881 spore_V_K stage V sp 98.1 5.4E-05 1.2E-09 74.7 12.8 162 181-358 7-192 (261)
101 TIGR02880 cbbX_cfxQ probable R 98.0 0.00013 2.8E-09 72.7 15.5 133 210-358 60-209 (284)
102 PRK12422 chromosomal replicati 98.0 0.00021 4.6E-09 75.5 17.7 154 208-383 141-306 (445)
103 KOG0989 Replication factor C, 98.0 3.9E-05 8.4E-10 74.1 10.9 183 179-383 35-223 (346)
104 PRK05563 DNA polymerase III su 98.0 0.00016 3.5E-09 78.8 17.2 193 179-388 15-218 (559)
105 KOG2543 Origin recognition com 98.0 8.6E-05 1.9E-09 73.8 13.4 167 179-356 5-192 (438)
106 PRK14086 dnaA chromosomal repl 98.0 0.00022 4.8E-09 76.9 17.6 161 208-388 314-486 (617)
107 PRK05707 DNA polymerase III su 98.0 0.00015 3.2E-09 73.6 15.2 97 286-390 105-203 (328)
108 PRK07399 DNA polymerase III su 98.0 0.00011 2.3E-09 74.2 14.0 197 180-390 4-221 (314)
109 COG3267 ExeA Type II secretory 98.0 0.00043 9.2E-09 65.6 15.9 182 206-392 49-247 (269)
110 PRK11034 clpA ATP-dependent Cl 97.9 0.00011 2.5E-09 82.2 14.1 156 180-356 186-361 (758)
111 PF00004 AAA: ATPase family as 97.9 2.9E-05 6.3E-10 67.7 7.4 21 211-231 1-21 (132)
112 TIGR03346 chaperone_ClpB ATP-d 97.9 0.00013 2.9E-09 83.7 14.8 155 180-356 173-348 (852)
113 PRK10865 protein disaggregatio 97.9 0.0002 4.3E-09 82.0 14.3 45 180-231 178-222 (857)
114 smart00382 AAA ATPases associa 97.8 0.00018 3.8E-09 63.0 9.5 87 209-299 3-90 (148)
115 PRK08116 hypothetical protein; 97.8 0.00014 3E-09 71.8 9.6 103 209-326 115-220 (268)
116 PRK06090 DNA polymerase III su 97.7 0.00095 2.1E-08 67.1 15.2 93 286-390 107-201 (319)
117 PRK10536 hypothetical protein; 97.7 0.00072 1.6E-08 65.0 13.6 137 178-327 53-213 (262)
118 COG0593 DnaA ATPase involved i 97.7 0.0006 1.3E-08 70.1 13.5 137 207-360 112-260 (408)
119 PRK08769 DNA polymerase III su 97.7 0.0011 2.3E-08 66.8 15.1 96 286-391 112-209 (319)
120 TIGR00602 rad24 checkpoint pro 97.7 0.00029 6.3E-09 77.0 11.9 53 177-231 81-133 (637)
121 PF13177 DNA_pol3_delta2: DNA 97.7 0.00062 1.3E-08 61.8 11.6 137 184-345 1-162 (162)
122 PRK06871 DNA polymerase III su 97.7 0.0015 3.3E-08 65.8 15.5 177 189-387 11-200 (325)
123 TIGR03689 pup_AAA proteasome A 97.6 0.00042 9E-09 73.9 11.9 170 178-357 180-378 (512)
124 PRK08058 DNA polymerase III su 97.6 0.00083 1.8E-08 68.5 13.8 163 181-356 6-181 (329)
125 TIGR02639 ClpA ATP-dependent C 97.6 0.00071 1.5E-08 76.6 13.8 136 180-326 454-603 (731)
126 PTZ00361 26 proteosome regulat 97.6 0.00046 1E-08 72.4 11.3 159 180-358 183-368 (438)
127 PTZ00454 26S protease regulato 97.6 0.001 2.2E-08 69.2 13.7 161 177-357 142-329 (398)
128 PRK10865 protein disaggregatio 97.6 0.00075 1.6E-08 77.4 13.8 139 180-326 568-720 (857)
129 PRK10787 DNA-binding ATP-depen 97.6 0.0025 5.5E-08 72.1 17.7 165 180-357 322-506 (784)
130 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00086 1.9E-08 77.2 14.1 137 180-326 565-717 (852)
131 PRK12377 putative replication 97.6 0.00022 4.8E-09 69.1 7.9 102 208-326 101-205 (248)
132 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0023 5E-08 63.0 15.3 41 210-255 23-63 (262)
133 PF10443 RNA12: RNA12 protein; 97.6 0.0022 4.9E-08 65.7 15.1 204 185-402 1-290 (431)
134 CHL00176 ftsH cell division pr 97.5 0.0012 2.5E-08 72.8 14.1 179 179-382 182-386 (638)
135 TIGR01241 FtsH_fam ATP-depende 97.5 0.0017 3.6E-08 70.3 15.1 209 177-410 52-295 (495)
136 COG0542 clpA ATP-binding subun 97.5 0.00026 5.6E-09 78.0 8.4 138 180-325 491-642 (786)
137 TIGR00763 lon ATP-dependent pr 97.5 0.014 3.1E-07 66.6 22.7 165 180-357 320-505 (775)
138 PRK07993 DNA polymerase III su 97.5 0.0027 5.8E-08 64.7 14.8 94 286-388 107-202 (334)
139 COG2812 DnaX DNA polymerase II 97.5 0.00025 5.3E-09 75.1 7.2 189 180-385 16-215 (515)
140 PF07693 KAP_NTPase: KAP famil 97.5 0.0054 1.2E-07 62.6 16.8 168 185-356 1-262 (325)
141 PRK08181 transposase; Validate 97.4 0.00038 8.3E-09 68.3 7.8 101 209-327 107-209 (269)
142 COG1373 Predicted ATPase (AAA+ 97.4 0.0024 5.1E-08 66.8 13.7 118 210-352 39-162 (398)
143 COG2607 Predicted ATPase (AAA+ 97.4 0.0025 5.3E-08 59.8 12.1 123 176-326 56-182 (287)
144 COG1222 RPT1 ATP-dependent 26S 97.4 0.0046 9.9E-08 61.5 14.6 182 177-384 148-357 (406)
145 PRK13531 regulatory ATPase Rav 97.4 0.00053 1.2E-08 71.9 8.6 155 181-356 21-193 (498)
146 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00055 1.2E-08 78.3 9.0 137 180-326 566-718 (852)
147 PRK07952 DNA replication prote 97.4 0.0011 2.4E-08 64.1 9.8 103 208-326 99-204 (244)
148 PRK06964 DNA polymerase III su 97.4 0.0028 6E-08 64.5 13.0 93 286-390 131-225 (342)
149 PF01695 IstB_IS21: IstB-like 97.4 0.0005 1.1E-08 63.4 7.0 100 208-326 47-149 (178)
150 PRK08939 primosomal protein Dn 97.3 0.0011 2.4E-08 66.6 9.8 121 184-325 135-259 (306)
151 KOG0744 AAA+-type ATPase [Post 97.3 0.0017 3.7E-08 63.3 10.5 81 208-298 177-261 (423)
152 PRK11034 clpA ATP-dependent Cl 97.3 0.0021 4.7E-08 72.1 12.8 135 180-325 458-606 (758)
153 PF02562 PhoH: PhoH-like prote 97.3 0.00035 7.5E-09 65.3 5.3 130 184-326 4-155 (205)
154 PF04665 Pox_A32: Poxvirus A32 97.3 0.00052 1.1E-08 65.6 6.3 37 208-246 13-49 (241)
155 PRK06526 transposase; Provisio 97.3 0.0007 1.5E-08 66.1 7.3 101 208-327 98-201 (254)
156 CHL00095 clpC Clp protease ATP 97.3 0.0013 2.8E-08 75.5 10.5 139 180-326 509-661 (821)
157 PRK06921 hypothetical protein; 97.3 0.0013 2.9E-08 64.7 9.1 99 208-326 117-224 (266)
158 PRK09183 transposase/IS protei 97.2 0.0014 3E-08 64.3 8.9 101 208-326 102-205 (259)
159 KOG1514 Origin recognition com 97.2 0.011 2.4E-07 63.6 15.9 205 179-390 395-621 (767)
160 PRK08118 topology modulation p 97.2 0.00014 3.1E-09 66.3 1.8 34 210-243 3-37 (167)
161 COG0470 HolB ATPase involved i 97.2 0.0021 4.6E-08 65.5 10.6 145 181-346 2-170 (325)
162 PRK04296 thymidine kinase; Pro 97.2 0.00079 1.7E-08 62.9 6.4 113 209-328 3-117 (190)
163 COG0466 Lon ATP-dependent Lon 97.2 0.0007 1.5E-08 72.8 6.6 166 179-357 322-508 (782)
164 PRK09361 radB DNA repair and r 97.2 0.0019 4.2E-08 62.1 9.2 87 206-296 21-116 (225)
165 KOG2004 Mitochondrial ATP-depe 97.2 0.018 3.8E-07 62.2 16.7 166 179-357 410-596 (906)
166 PRK04132 replication factor C 97.2 0.0074 1.6E-07 68.1 14.8 155 216-390 574-731 (846)
167 TIGR02237 recomb_radB DNA repa 97.1 0.0018 3.8E-08 61.6 8.5 87 206-296 10-106 (209)
168 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0027 5.9E-08 61.5 10.0 90 206-296 17-124 (235)
169 PRK07261 topology modulation p 97.1 0.0013 2.8E-08 60.4 7.2 22 210-231 2-23 (171)
170 KOG0741 AAA+-type ATPase [Post 97.1 0.0099 2.2E-07 61.8 14.0 150 205-380 535-704 (744)
171 COG0542 clpA ATP-binding subun 97.1 0.0016 3.4E-08 72.0 8.7 155 180-356 170-345 (786)
172 PRK08699 DNA polymerase III su 97.1 0.0038 8.3E-08 63.3 11.1 71 286-356 112-184 (325)
173 KOG0991 Replication factor C, 97.1 0.0025 5.3E-08 59.4 8.5 45 179-230 26-70 (333)
174 cd01394 radB RadB. The archaea 97.1 0.0029 6.4E-08 60.5 9.4 43 206-250 17-59 (218)
175 PLN00020 ribulose bisphosphate 97.1 0.011 2.5E-07 59.6 13.6 26 206-231 146-171 (413)
176 KOG2228 Origin recognition com 97.1 0.0071 1.5E-07 59.6 11.8 173 179-357 23-219 (408)
177 TIGR02902 spore_lonB ATP-depen 97.1 0.0021 4.6E-08 69.8 9.1 44 180-230 65-108 (531)
178 PF14532 Sigma54_activ_2: Sigm 97.0 0.00051 1.1E-08 60.5 3.6 108 183-327 1-110 (138)
179 cd01393 recA_like RecA is a b 97.0 0.0037 8E-08 60.1 9.9 91 206-297 17-124 (226)
180 PF07728 AAA_5: AAA domain (dy 97.0 0.00033 7.2E-09 61.8 2.4 88 211-311 2-89 (139)
181 PF08423 Rad51: Rad51; InterP 97.0 0.0023 5.1E-08 62.6 8.4 90 206-296 36-142 (256)
182 PRK06835 DNA replication prote 97.0 0.0019 4E-08 65.5 7.7 102 209-326 184-288 (329)
183 TIGR01243 CDC48 AAA family ATP 97.0 0.0058 1.3E-07 69.5 12.6 182 178-384 176-381 (733)
184 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00062 1.3E-08 68.8 4.1 50 181-231 52-101 (361)
185 TIGR01243 CDC48 AAA family ATP 97.0 0.01 2.3E-07 67.4 14.5 180 179-383 452-656 (733)
186 COG1875 NYN ribonuclease and A 97.0 0.0015 3.2E-08 64.9 6.4 136 182-327 226-388 (436)
187 PHA00729 NTP-binding motif con 97.0 0.0053 1.2E-07 58.2 9.9 25 207-231 16-40 (226)
188 PTZ00494 tuzin-like protein; P 97.0 0.046 9.9E-07 56.2 16.8 171 174-357 365-544 (664)
189 COG1223 Predicted ATPase (AAA+ 96.9 0.0086 1.9E-07 56.8 10.6 178 179-383 120-318 (368)
190 PRK05541 adenylylsulfate kinas 96.9 0.004 8.6E-08 57.4 8.6 37 206-244 5-41 (176)
191 PRK11889 flhF flagellar biosyn 96.9 0.0071 1.5E-07 61.8 10.7 114 207-322 240-357 (436)
192 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0092 2E-07 53.4 10.3 117 209-328 3-139 (159)
193 COG1484 DnaC DNA replication p 96.9 0.0016 3.5E-08 63.6 5.9 82 207-305 104-185 (254)
194 PRK12608 transcription termina 96.9 0.0042 9.2E-08 63.2 8.9 102 188-296 119-229 (380)
195 PF00158 Sigma54_activat: Sigm 96.9 0.0028 6.1E-08 57.7 6.9 127 182-326 1-143 (168)
196 KOG2035 Replication factor C, 96.9 0.0062 1.3E-07 58.3 9.1 208 181-411 14-259 (351)
197 KOG1969 DNA replication checkp 96.9 0.0037 8E-08 67.4 8.5 89 205-311 323-411 (877)
198 KOG0733 Nuclear AAA ATPase (VC 96.9 0.023 5E-07 60.3 14.1 160 178-357 188-374 (802)
199 PF13207 AAA_17: AAA domain; P 96.9 0.0008 1.7E-08 57.7 3.0 22 210-231 1-22 (121)
200 CHL00195 ycf46 Ycf46; Provisio 96.8 0.0085 1.8E-07 64.0 11.2 160 180-359 228-407 (489)
201 cd03214 ABC_Iron-Siderophores_ 96.8 0.012 2.6E-07 54.4 11.0 120 208-330 25-161 (180)
202 PRK06067 flagellar accessory p 96.8 0.0078 1.7E-07 58.3 10.1 87 206-297 23-130 (234)
203 cd01120 RecA-like_NTPases RecA 96.8 0.0042 9.2E-08 55.9 7.8 39 210-250 1-39 (165)
204 cd03228 ABCC_MRP_Like The MRP 96.8 0.0084 1.8E-07 54.9 9.6 117 208-331 28-159 (171)
205 PHA02244 ATPase-like protein 96.8 0.0067 1.4E-07 61.6 9.4 22 210-231 121-142 (383)
206 PRK13695 putative NTPase; Prov 96.8 0.0021 4.5E-08 59.1 5.5 22 210-231 2-23 (174)
207 COG2884 FtsE Predicted ATPase 96.8 0.015 3.2E-07 52.8 10.4 61 273-334 141-204 (223)
208 PRK06696 uridine kinase; Valid 96.8 0.0017 3.6E-08 62.5 4.8 44 184-231 2-45 (223)
209 PF07724 AAA_2: AAA domain (Cd 96.8 0.0015 3.1E-08 59.8 4.1 40 208-249 3-43 (171)
210 TIGR02238 recomb_DMC1 meiotic 96.8 0.0074 1.6E-07 60.8 9.5 59 206-265 94-156 (313)
211 cd00983 recA RecA is a bacter 96.8 0.0033 7.2E-08 63.1 6.9 84 206-296 53-142 (325)
212 KOG0733 Nuclear AAA ATPase (VC 96.7 0.022 4.7E-07 60.4 12.8 155 208-384 545-718 (802)
213 TIGR02012 tigrfam_recA protein 96.7 0.0036 7.9E-08 62.8 7.0 85 206-297 53-143 (321)
214 COG4608 AppF ABC-type oligopep 96.7 0.011 2.3E-07 57.1 9.8 126 207-335 38-178 (268)
215 PRK05800 cobU adenosylcobinami 96.7 0.0035 7.5E-08 57.3 6.2 153 210-388 3-170 (170)
216 cd03247 ABCC_cytochrome_bd The 96.7 0.0046 1E-07 57.1 7.0 118 208-331 28-161 (178)
217 PRK09354 recA recombinase A; P 96.7 0.0062 1.4E-07 61.7 8.3 84 206-296 58-147 (349)
218 TIGR01817 nifA Nif-specific re 96.7 0.0098 2.1E-07 65.1 10.6 134 178-326 194-340 (534)
219 TIGR01650 PD_CobS cobaltochela 96.7 0.036 7.8E-07 55.6 13.5 42 181-231 46-87 (327)
220 KOG0731 AAA+-type ATPase conta 96.7 0.025 5.5E-07 62.3 13.3 185 179-387 310-521 (774)
221 KOG1051 Chaperone HSP104 and r 96.7 0.0085 1.8E-07 67.3 9.9 122 180-312 562-685 (898)
222 TIGR02974 phageshock_pspF psp 96.7 0.0098 2.1E-07 60.6 9.7 45 182-231 1-45 (329)
223 PF00448 SRP54: SRP54-type pro 96.6 0.0057 1.2E-07 57.3 7.3 87 208-296 1-92 (196)
224 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.016 3.4E-07 51.4 9.7 105 208-331 26-131 (144)
225 PLN03187 meiotic recombination 96.6 0.011 2.3E-07 60.3 9.5 59 206-265 124-186 (344)
226 cd03216 ABC_Carb_Monos_I This 96.6 0.01 2.2E-07 53.9 8.6 117 208-331 26-146 (163)
227 KOG0735 AAA+-type ATPase [Post 96.6 0.04 8.7E-07 59.5 13.8 162 207-390 430-616 (952)
228 PRK12724 flagellar biosynthesi 96.6 0.008 1.7E-07 62.2 8.5 24 207-230 222-245 (432)
229 TIGR03499 FlhF flagellar biosy 96.6 0.0072 1.6E-07 60.2 8.0 88 207-296 193-281 (282)
230 cd00544 CobU Adenosylcobinamid 96.6 0.0091 2E-07 54.4 7.8 150 211-386 2-168 (169)
231 PRK11608 pspF phage shock prot 96.5 0.0074 1.6E-07 61.5 7.8 134 180-326 6-150 (326)
232 PLN03186 DNA repair protein RA 96.5 0.014 2.9E-07 59.5 9.5 58 206-264 121-182 (342)
233 TIGR02239 recomb_RAD51 DNA rep 96.5 0.012 2.6E-07 59.5 9.1 58 206-264 94-155 (316)
234 PF13604 AAA_30: AAA domain; P 96.5 0.02 4.4E-07 53.6 10.1 107 208-326 18-130 (196)
235 cd01133 F1-ATPase_beta F1 ATP 96.5 0.01 2.3E-07 58.0 8.1 88 207-296 68-172 (274)
236 cd03238 ABC_UvrA The excision 96.5 0.016 3.5E-07 53.2 9.0 115 207-331 20-153 (176)
237 COG1136 SalX ABC-type antimicr 96.5 0.027 5.9E-07 53.4 10.6 60 274-333 147-209 (226)
238 COG4618 ArpD ABC-type protease 96.5 0.022 4.8E-07 59.3 10.6 23 208-230 362-384 (580)
239 cd03223 ABCD_peroxisomal_ALDP 96.4 0.032 6.9E-07 50.8 10.8 115 208-330 27-151 (166)
240 PRK12723 flagellar biosynthesi 96.4 0.035 7.6E-07 57.5 12.1 90 207-298 173-265 (388)
241 cd03222 ABC_RNaseL_inhibitor T 96.4 0.023 5E-07 52.2 9.7 103 208-331 25-136 (177)
242 KOG0734 AAA+-type ATPase conta 96.4 0.023 5E-07 59.3 10.4 55 180-234 304-363 (752)
243 cd01131 PilT Pilus retraction 96.4 0.0064 1.4E-07 57.2 6.1 111 209-330 2-112 (198)
244 PRK08233 hypothetical protein; 96.4 0.0092 2E-07 55.1 7.0 24 208-231 3-26 (182)
245 PTZ00035 Rad51 protein; Provis 96.4 0.024 5.2E-07 57.8 10.5 58 206-264 116-177 (337)
246 PRK15429 formate hydrogenlyase 96.4 0.013 2.9E-07 66.1 9.4 132 180-326 376-520 (686)
247 COG1126 GlnQ ABC-type polar am 96.4 0.039 8.5E-07 51.3 10.5 58 276-333 143-202 (240)
248 COG1419 FlhF Flagellar GTP-bin 96.3 0.025 5.5E-07 57.8 10.2 105 207-314 202-310 (407)
249 cd03230 ABC_DR_subfamily_A Thi 96.3 0.013 2.8E-07 53.8 7.6 118 208-331 26-159 (173)
250 PRK14722 flhF flagellar biosyn 96.3 0.012 2.5E-07 60.5 7.7 88 208-297 137-225 (374)
251 TIGR02236 recomb_radA DNA repa 96.3 0.029 6.2E-07 56.8 10.7 57 206-263 93-153 (310)
252 cd03246 ABCC_Protease_Secretio 96.3 0.017 3.6E-07 53.1 8.2 117 208-331 28-160 (173)
253 COG0714 MoxR-like ATPases [Gen 96.3 0.014 3E-07 59.7 8.1 109 181-311 25-136 (329)
254 PF10236 DAP3: Mitochondrial r 96.3 0.092 2E-06 53.0 13.9 49 338-387 258-306 (309)
255 PRK07667 uridine kinase; Provi 96.3 0.0054 1.2E-07 57.4 4.7 38 189-231 3-40 (193)
256 PRK15455 PrkA family serine pr 96.3 0.0042 9.1E-08 66.2 4.3 49 181-230 77-125 (644)
257 PF03215 Rad17: Rad17 cell cyc 96.3 0.022 4.8E-07 61.3 9.8 60 180-245 19-78 (519)
258 PRK07132 DNA polymerase III su 96.3 0.14 2.9E-06 51.3 14.8 134 207-356 17-161 (299)
259 PRK00771 signal recognition pa 96.2 0.023 5.1E-07 59.7 9.7 87 207-296 94-184 (437)
260 COG0468 RecA RecA/RadA recombi 96.2 0.022 4.8E-07 55.9 8.8 89 205-296 57-150 (279)
261 PRK05703 flhF flagellar biosyn 96.2 0.031 6.7E-07 58.9 10.5 87 208-296 221-308 (424)
262 cd01124 KaiC KaiC is a circadi 96.2 0.019 4.2E-07 53.2 8.2 37 210-248 1-37 (187)
263 PRK05439 pantothenate kinase; 96.2 0.021 4.6E-07 57.1 8.8 26 205-230 83-108 (311)
264 PRK05022 anaerobic nitric oxid 96.1 0.017 3.8E-07 62.6 8.6 133 179-326 186-331 (509)
265 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.037 8E-07 53.6 10.0 49 206-258 19-67 (237)
266 PRK04301 radA DNA repair and r 96.1 0.042 9E-07 55.8 10.7 57 206-263 100-160 (317)
267 PRK14974 cell division protein 96.1 0.04 8.7E-07 55.9 10.4 89 207-298 139-233 (336)
268 COG1124 DppF ABC-type dipeptid 96.1 0.063 1.4E-06 50.9 10.7 56 279-334 151-209 (252)
269 TIGR00554 panK_bact pantothena 96.1 0.024 5.1E-07 56.3 8.5 25 206-230 60-84 (290)
270 PRK08533 flagellar accessory p 96.1 0.042 9E-07 53.0 10.0 50 206-259 22-71 (230)
271 cd02025 PanK Pantothenate kina 96.1 0.019 4.1E-07 54.9 7.3 22 210-231 1-22 (220)
272 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.058 1.3E-06 51.9 10.9 41 206-248 18-58 (229)
273 cd01125 repA Hexameric Replica 96.0 0.048 1E-06 52.9 10.2 21 210-230 3-23 (239)
274 cd03215 ABC_Carb_Monos_II This 96.0 0.068 1.5E-06 49.4 10.8 24 208-231 26-49 (182)
275 PF13238 AAA_18: AAA domain; P 96.0 0.0047 1E-07 53.3 2.8 21 211-231 1-21 (129)
276 PRK10733 hflB ATP-dependent me 96.0 0.067 1.5E-06 59.7 12.3 159 180-358 152-336 (644)
277 COG0572 Udk Uridine kinase [Nu 96.0 0.013 2.7E-07 55.0 5.5 78 206-288 6-85 (218)
278 cd01122 GP4d_helicase GP4d_hel 96.0 0.07 1.5E-06 52.9 11.3 55 207-264 29-83 (271)
279 COG1618 Predicted nucleotide k 96.0 0.0057 1.2E-07 53.9 3.0 24 208-231 5-28 (179)
280 cd03229 ABC_Class3 This class 95.9 0.022 4.8E-07 52.5 7.1 24 208-231 26-49 (178)
281 PRK12726 flagellar biosynthesi 95.9 0.061 1.3E-06 55.0 10.6 91 206-298 204-296 (407)
282 PF00154 RecA: recA bacterial 95.9 0.014 3E-07 58.6 5.8 84 206-296 51-140 (322)
283 cd03369 ABCC_NFT1 Domain 2 of 95.9 0.093 2E-06 49.6 11.4 24 207-230 33-56 (207)
284 KOG0730 AAA+-type ATPase [Post 95.9 0.052 1.1E-06 58.3 10.2 52 180-231 434-491 (693)
285 PF13671 AAA_33: AAA domain; P 95.9 0.0066 1.4E-07 53.6 3.2 21 210-230 1-21 (143)
286 cd03115 SRP The signal recogni 95.9 0.05 1.1E-06 49.8 9.2 22 210-231 2-23 (173)
287 PRK10867 signal recognition pa 95.9 0.029 6.3E-07 58.9 8.3 24 207-230 99-122 (433)
288 TIGR00959 ffh signal recogniti 95.9 0.029 6.3E-07 58.9 8.3 25 207-231 98-122 (428)
289 COG0464 SpoVK ATPases of the A 95.9 0.051 1.1E-06 58.9 10.6 132 206-358 274-424 (494)
290 PRK12727 flagellar biosynthesi 95.8 0.037 8E-07 58.9 8.9 89 207-297 349-438 (559)
291 TIGR00708 cobA cob(I)alamin ad 95.8 0.087 1.9E-06 47.8 10.2 119 208-327 5-140 (173)
292 PF00485 PRK: Phosphoribulokin 95.8 0.0065 1.4E-07 57.0 3.0 22 210-231 1-22 (194)
293 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.047 1E-06 52.6 8.8 52 278-331 148-203 (254)
294 PRK05917 DNA polymerase III su 95.8 0.17 3.6E-06 50.1 12.9 59 286-344 94-154 (290)
295 cd03244 ABCC_MRP_domain2 Domai 95.8 0.09 2E-06 50.3 11.0 24 208-231 30-53 (221)
296 PRK13539 cytochrome c biogenes 95.8 0.055 1.2E-06 51.3 9.3 61 281-344 139-201 (207)
297 cd03263 ABC_subfamily_A The AB 95.8 0.071 1.5E-06 51.0 10.1 24 208-231 28-51 (220)
298 TIGR00235 udk uridine kinase. 95.8 0.0079 1.7E-07 57.0 3.4 26 206-231 4-29 (207)
299 cd03217 ABC_FeS_Assembly ABC-t 95.8 0.067 1.4E-06 50.3 9.7 25 207-231 25-49 (200)
300 PTZ00301 uridine kinase; Provi 95.8 0.015 3.1E-07 55.1 5.1 23 208-230 3-25 (210)
301 PF12775 AAA_7: P-loop contain 95.7 0.0099 2.2E-07 58.7 4.0 34 190-231 23-56 (272)
302 PRK05480 uridine/cytidine kina 95.7 0.008 1.7E-07 57.1 3.3 26 206-231 4-29 (209)
303 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.043 9.4E-07 53.9 8.4 41 206-248 34-74 (259)
304 cd03254 ABCC_Glucan_exporter_l 95.7 0.12 2.5E-06 49.8 11.3 24 208-231 29-52 (229)
305 cd03233 ABC_PDR_domain1 The pl 95.7 0.13 2.7E-06 48.6 11.2 25 207-231 32-56 (202)
306 TIGR02858 spore_III_AA stage I 95.7 0.13 2.7E-06 50.8 11.4 114 207-330 110-232 (270)
307 COG0563 Adk Adenylate kinase a 95.7 0.017 3.7E-07 53.1 5.1 22 210-231 2-23 (178)
308 cd02019 NK Nucleoside/nucleoti 95.7 0.0075 1.6E-07 45.9 2.3 22 210-231 1-22 (69)
309 KOG0924 mRNA splicing factor A 95.7 0.092 2E-06 56.3 10.9 127 208-340 371-526 (1042)
310 cd03213 ABCG_EPDR ABCG transpo 95.7 0.13 2.8E-06 48.1 11.2 25 207-231 34-58 (194)
311 PRK06762 hypothetical protein; 95.7 0.0082 1.8E-07 54.6 2.9 24 208-231 2-25 (166)
312 COG1703 ArgK Putative periplas 95.7 0.011 2.4E-07 57.5 3.9 67 190-261 38-104 (323)
313 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.038 8.3E-07 49.7 7.3 119 208-332 25-145 (157)
314 PRK09270 nucleoside triphospha 95.6 0.043 9.4E-07 52.9 8.0 26 206-231 31-56 (229)
315 cd03253 ABCC_ATM1_transporter 95.6 0.13 2.8E-06 49.7 11.4 53 280-332 148-201 (236)
316 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.018 3.8E-07 54.8 5.1 23 208-230 29-51 (213)
317 PRK00889 adenylylsulfate kinas 95.6 0.084 1.8E-06 48.5 9.5 25 207-231 3-27 (175)
318 cd03245 ABCC_bacteriocin_expor 95.6 0.12 2.5E-06 49.5 10.8 25 207-231 29-53 (220)
319 TIGR00150 HI0065_YjeE ATPase, 95.6 0.016 3.5E-07 50.2 4.3 41 187-232 6-46 (133)
320 PF03308 ArgK: ArgK protein; 95.6 0.017 3.7E-07 55.4 4.8 64 188-256 14-77 (266)
321 cd03226 ABC_cobalt_CbiO_domain 95.6 0.11 2.4E-06 49.0 10.5 24 208-231 26-49 (205)
322 PRK05986 cob(I)alamin adenolsy 95.6 0.093 2E-06 48.4 9.4 118 208-327 22-158 (191)
323 PRK04328 hypothetical protein; 95.6 0.05 1.1E-06 53.1 8.2 42 206-249 21-62 (249)
324 PRK06547 hypothetical protein; 95.5 0.017 3.6E-07 52.9 4.5 26 206-231 13-38 (172)
325 cd03251 ABCC_MsbA MsbA is an e 95.5 0.17 3.6E-06 48.9 11.8 25 207-231 27-51 (234)
326 PF01583 APS_kinase: Adenylyls 95.5 0.015 3.2E-07 52.0 4.0 36 208-245 2-37 (156)
327 TIGR00064 ftsY signal recognit 95.5 0.063 1.4E-06 53.1 8.8 89 206-297 70-164 (272)
328 PRK06731 flhF flagellar biosyn 95.5 0.08 1.7E-06 52.0 9.4 89 208-298 75-165 (270)
329 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.11 2.3E-06 49.9 10.1 24 208-231 48-71 (224)
330 cd03282 ABC_MSH4_euk MutS4 hom 95.5 0.028 6.2E-07 53.0 5.9 118 208-334 29-158 (204)
331 cd02027 APSK Adenosine 5'-phos 95.5 0.036 7.9E-07 49.4 6.3 22 210-231 1-22 (149)
332 cd03252 ABCC_Hemolysin The ABC 95.5 0.18 4E-06 48.7 11.8 24 207-230 27-50 (237)
333 PRK09519 recA DNA recombinatio 95.5 0.051 1.1E-06 60.8 8.7 85 206-297 58-148 (790)
334 cd01121 Sms Sms (bacterial rad 95.5 0.067 1.5E-06 55.3 9.0 84 206-297 80-168 (372)
335 PRK10820 DNA-binding transcrip 95.4 0.034 7.3E-07 60.5 7.2 135 179-327 203-349 (520)
336 TIGR03740 galliderm_ABC gallid 95.4 0.18 3.9E-06 48.3 11.5 24 208-231 26-49 (223)
337 PTZ00088 adenylate kinase 1; P 95.4 0.016 3.4E-07 55.7 3.9 22 210-231 8-29 (229)
338 COG2274 SunT ABC-type bacterio 95.4 0.11 2.3E-06 58.3 11.0 24 207-230 498-521 (709)
339 cd03231 ABC_CcmA_heme_exporter 95.4 0.13 2.9E-06 48.3 10.3 25 207-231 25-49 (201)
340 cd03268 ABC_BcrA_bacitracin_re 95.4 0.081 1.8E-06 50.1 8.8 24 207-230 25-48 (208)
341 cd03264 ABC_drug_resistance_li 95.4 0.13 2.9E-06 48.7 10.4 21 210-230 27-47 (211)
342 TIGR03880 KaiC_arch_3 KaiC dom 95.4 0.1 2.2E-06 50.0 9.6 42 206-249 14-55 (224)
343 COG1102 Cmk Cytidylate kinase 95.4 0.036 7.9E-07 48.9 5.7 44 210-266 2-45 (179)
344 COG1643 HrpA HrpA-like helicas 95.3 0.13 2.8E-06 58.2 11.4 130 186-327 52-205 (845)
345 PRK06002 fliI flagellum-specif 95.3 0.061 1.3E-06 56.4 8.3 87 207-296 164-263 (450)
346 cd03237 ABC_RNaseL_inhibitor_d 95.3 0.13 2.9E-06 50.0 10.3 25 207-231 24-48 (246)
347 COG1066 Sms Predicted ATP-depe 95.3 0.055 1.2E-06 55.1 7.5 95 189-297 79-178 (456)
348 PRK03839 putative kinase; Prov 95.3 0.012 2.7E-07 54.3 2.8 22 210-231 2-23 (180)
349 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.3 0.29 6.3E-06 47.3 12.5 25 207-231 28-52 (238)
350 PRK06217 hypothetical protein; 95.3 0.06 1.3E-06 49.9 7.3 23 210-232 3-25 (183)
351 PF06309 Torsin: Torsin; Inte 95.3 0.025 5.4E-07 48.2 4.2 47 181-231 26-76 (127)
352 TIGR03575 selen_PSTK_euk L-ser 95.2 0.055 1.2E-06 54.9 7.4 21 211-231 2-22 (340)
353 TIGR01069 mutS2 MutS2 family p 95.2 0.013 2.9E-07 66.3 3.3 23 208-230 322-344 (771)
354 PRK04040 adenylate kinase; Pro 95.2 0.015 3.2E-07 54.1 3.1 24 208-231 2-25 (188)
355 KOG3928 Mitochondrial ribosome 95.2 0.43 9.3E-06 48.7 13.3 60 334-394 401-460 (461)
356 TIGR01360 aden_kin_iso1 adenyl 95.2 0.015 3.1E-07 54.1 2.9 23 208-230 3-25 (188)
357 PF13481 AAA_25: AAA domain; P 95.2 0.081 1.8E-06 49.3 8.0 41 209-249 33-81 (193)
358 PRK13543 cytochrome c biogenes 95.2 0.19 4.1E-06 47.8 10.6 25 207-231 36-60 (214)
359 KOG0736 Peroxisome assembly fa 95.1 0.42 9.2E-06 52.5 13.9 173 184-380 676-875 (953)
360 PRK09544 znuC high-affinity zi 95.1 0.17 3.6E-06 49.5 10.4 25 207-231 29-53 (251)
361 PF08433 KTI12: Chromatin asso 95.1 0.025 5.4E-07 55.7 4.5 23 209-231 2-24 (270)
362 PF06745 KaiC: KaiC; InterPro 95.1 0.027 5.9E-07 54.1 4.7 86 206-296 17-124 (226)
363 TIGR02329 propionate_PrpR prop 95.1 0.056 1.2E-06 58.5 7.5 47 180-231 212-258 (526)
364 PRK10463 hydrogenase nickel in 95.1 0.082 1.8E-06 52.2 7.9 26 206-231 102-127 (290)
365 cd03232 ABC_PDR_domain2 The pl 95.1 0.11 2.4E-06 48.5 8.7 23 208-230 33-55 (192)
366 KOG0743 AAA+-type ATPase [Post 95.0 0.47 1E-05 49.1 13.4 154 209-397 236-416 (457)
367 TIGR02655 circ_KaiC circadian 95.0 0.11 2.3E-06 56.2 9.4 98 189-296 249-362 (484)
368 PF00910 RNA_helicase: RNA hel 95.0 0.012 2.5E-07 49.3 1.6 21 211-231 1-21 (107)
369 PRK13647 cbiO cobalt transport 95.0 0.18 3.9E-06 50.1 10.4 24 208-231 31-54 (274)
370 PF07726 AAA_3: ATPase family 95.0 0.014 2.9E-07 49.9 2.0 27 211-239 2-28 (131)
371 TIGR03522 GldA_ABC_ATP gliding 95.0 0.17 3.7E-06 51.0 10.3 25 207-231 27-51 (301)
372 PRK14721 flhF flagellar biosyn 95.0 0.19 4E-06 52.6 10.7 88 207-296 190-278 (420)
373 PRK00131 aroK shikimate kinase 95.0 0.017 3.7E-07 52.9 2.8 24 208-231 4-27 (175)
374 COG2401 ABC-type ATPase fused 95.0 0.039 8.4E-07 56.0 5.3 63 276-338 514-579 (593)
375 TIGR02868 CydC thiol reductant 95.0 0.099 2.1E-06 57.3 9.1 25 206-230 359-383 (529)
376 PRK15177 Vi polysaccharide exp 95.0 0.15 3.2E-06 48.6 9.2 24 208-231 13-36 (213)
377 PF13479 AAA_24: AAA domain 94.9 0.081 1.8E-06 50.3 7.3 20 209-228 4-23 (213)
378 PF05659 RPW8: Arabidopsis bro 94.9 0.68 1.5E-05 40.9 12.5 83 2-84 3-86 (147)
379 cd03289 ABCC_CFTR2 The CFTR su 94.9 0.31 6.6E-06 48.4 11.7 24 208-231 30-53 (275)
380 PRK15453 phosphoribulokinase; 94.9 0.11 2.3E-06 51.0 8.1 25 206-230 3-27 (290)
381 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.029 6.2E-07 56.4 4.3 51 179-230 60-110 (358)
382 TIGR02322 phosphon_PhnN phosph 94.9 0.019 4E-07 53.0 2.8 23 209-231 2-24 (179)
383 TIGR01359 UMP_CMP_kin_fam UMP- 94.9 0.015 3.3E-07 53.8 2.2 21 210-230 1-21 (183)
384 cd03283 ABC_MutS-like MutS-lik 94.9 0.19 4.1E-06 47.2 9.6 22 209-230 26-47 (199)
385 PRK00625 shikimate kinase; Pro 94.9 0.017 3.8E-07 52.8 2.6 22 210-231 2-23 (173)
386 TIGR03498 FliI_clade3 flagella 94.9 0.081 1.8E-06 55.3 7.7 87 207-296 139-239 (418)
387 PRK11388 DNA-binding transcrip 94.9 0.075 1.6E-06 59.6 8.1 131 180-326 325-466 (638)
388 cd02023 UMPK Uridine monophosp 94.9 0.016 3.4E-07 54.6 2.3 21 210-230 1-21 (198)
389 KOG1532 GTPase XAB1, interacts 94.9 0.022 4.7E-07 54.5 3.1 29 205-233 16-44 (366)
390 TIGR00390 hslU ATP-dependent p 94.9 0.06 1.3E-06 55.7 6.5 52 180-231 12-70 (441)
391 PF00006 ATP-synt_ab: ATP synt 94.8 0.084 1.8E-06 50.1 7.0 48 208-259 15-63 (215)
392 PRK05973 replicative DNA helic 94.8 0.13 2.9E-06 49.4 8.4 49 206-258 62-110 (237)
393 cd01136 ATPase_flagellum-secre 94.8 0.13 2.9E-06 51.8 8.7 86 207-296 68-168 (326)
394 PRK10751 molybdopterin-guanine 94.8 0.028 6.1E-07 51.2 3.6 25 207-231 5-29 (173)
395 cd00227 CPT Chloramphenicol (C 94.8 0.02 4.4E-07 52.6 2.7 23 209-231 3-25 (175)
396 PRK11823 DNA repair protein Ra 94.8 0.13 2.8E-06 54.8 9.1 84 206-297 78-166 (446)
397 PF03193 DUF258: Protein of un 94.8 0.04 8.7E-07 49.4 4.4 35 187-231 24-58 (161)
398 cd02021 GntK Gluconate kinase 94.8 0.019 4.1E-07 51.3 2.4 22 210-231 1-22 (150)
399 cd04159 Arl10_like Arl10-like 94.7 0.13 2.8E-06 45.6 7.9 21 211-231 2-22 (159)
400 COG1131 CcmA ABC-type multidru 94.7 0.41 8.9E-06 47.9 12.1 25 207-231 30-54 (293)
401 cd03240 ABC_Rad50 The catalyti 94.7 0.14 3.1E-06 48.3 8.4 52 280-331 132-187 (204)
402 TIGR02314 ABC_MetN D-methionin 94.7 0.15 3.4E-06 52.1 9.2 24 208-231 31-54 (343)
403 cd02024 NRK1 Nicotinamide ribo 94.7 0.018 4E-07 53.3 2.2 22 210-231 1-22 (187)
404 TIGR03411 urea_trans_UrtD urea 94.7 0.3 6.5E-06 47.4 10.9 24 208-231 28-51 (242)
405 cd03248 ABCC_TAP TAP, the Tran 94.7 0.36 7.9E-06 46.2 11.4 25 207-231 39-63 (226)
406 PRK13537 nodulation ABC transp 94.7 0.26 5.6E-06 49.8 10.7 24 208-231 33-56 (306)
407 TIGR00416 sms DNA repair prote 94.7 0.18 3.9E-06 53.7 10.0 96 189-297 80-180 (454)
408 PRK14269 phosphate ABC transpo 94.7 0.32 7E-06 47.3 11.1 23 208-230 28-50 (246)
409 cd03250 ABCC_MRP_domain1 Domai 94.7 0.55 1.2E-05 44.2 12.4 25 207-231 30-54 (204)
410 COG2019 AdkA Archaeal adenylat 94.7 0.027 5.8E-07 50.0 3.0 23 208-230 4-26 (189)
411 PRK13545 tagH teichoic acids e 94.7 0.33 7.1E-06 52.1 11.7 24 208-231 50-73 (549)
412 TIGR01188 drrA daunorubicin re 94.7 0.23 4.9E-06 50.1 10.2 24 208-231 19-42 (302)
413 COG0396 sufC Cysteine desulfur 94.7 0.46 1E-05 44.8 11.2 25 208-232 30-54 (251)
414 COG1120 FepC ABC-type cobalami 94.7 0.22 4.7E-06 48.3 9.5 60 275-334 144-206 (258)
415 COG1428 Deoxynucleoside kinase 94.7 0.022 4.7E-07 52.8 2.5 24 208-231 4-27 (216)
416 PRK14723 flhF flagellar biosyn 94.7 0.11 2.4E-06 58.0 8.5 24 208-231 185-208 (767)
417 TIGR01420 pilT_fam pilus retra 94.7 0.07 1.5E-06 54.8 6.6 111 208-329 122-232 (343)
418 PRK05922 type III secretion sy 94.6 0.15 3.3E-06 53.3 9.0 86 207-296 156-256 (434)
419 TIGR03263 guanyl_kin guanylate 94.6 0.025 5.4E-07 52.2 2.8 23 209-231 2-24 (180)
420 PF03969 AFG1_ATPase: AFG1-lik 94.6 0.033 7.2E-07 57.2 4.0 77 206-300 60-140 (362)
421 cd03300 ABC_PotA_N PotA is an 94.6 0.2 4.3E-06 48.4 9.3 24 208-231 26-49 (232)
422 TIGR00041 DTMP_kinase thymidyl 94.6 0.13 2.9E-06 48.0 7.8 23 209-231 4-26 (195)
423 COG4181 Predicted ABC-type tra 94.6 0.49 1.1E-05 42.5 10.5 83 251-334 122-214 (228)
424 PF00625 Guanylate_kin: Guanyl 94.6 0.032 7E-07 51.7 3.5 37 208-246 2-38 (183)
425 cd02028 UMPK_like Uridine mono 94.6 0.022 4.8E-07 52.6 2.3 22 210-231 1-22 (179)
426 COG4133 CcmA ABC-type transpor 94.6 0.52 1.1E-05 43.0 10.8 22 209-230 29-50 (209)
427 PRK12597 F0F1 ATP synthase sub 94.6 0.084 1.8E-06 55.7 6.9 90 206-296 141-246 (461)
428 PRK10923 glnG nitrogen regulat 94.5 0.1 2.2E-06 56.3 7.7 47 180-231 138-184 (469)
429 PRK07276 DNA polymerase III su 94.5 0.82 1.8E-05 45.4 13.4 69 286-355 103-173 (290)
430 PF08477 Miro: Miro-like prote 94.5 0.028 6.1E-07 47.7 2.8 22 211-232 2-23 (119)
431 PRK06995 flhF flagellar biosyn 94.5 0.11 2.5E-06 55.1 7.8 88 208-297 256-344 (484)
432 PRK15424 propionate catabolism 94.5 0.089 1.9E-06 57.0 7.1 47 180-231 219-265 (538)
433 TIGR01425 SRP54_euk signal rec 94.5 0.12 2.6E-06 54.1 7.8 25 206-230 98-122 (429)
434 cd03236 ABC_RNaseL_inhibitor_d 94.5 0.25 5.5E-06 48.4 9.8 25 207-231 25-49 (255)
435 TIGR01818 ntrC nitrogen regula 94.5 0.21 4.5E-06 53.7 10.0 135 180-327 134-279 (463)
436 PRK11160 cysteine/glutathione 94.5 0.29 6.3E-06 54.2 11.3 24 207-230 365-388 (574)
437 PRK00409 recombination and DNA 94.5 0.023 4.9E-07 64.6 2.6 23 207-229 326-348 (782)
438 PF03266 NTPase_1: NTPase; In 94.5 0.026 5.7E-07 51.4 2.5 21 211-231 2-22 (168)
439 PRK13657 cyclic beta-1,2-gluca 94.5 0.3 6.6E-06 54.2 11.5 24 207-230 360-383 (588)
440 PRK08972 fliI flagellum-specif 94.5 0.11 2.4E-06 54.2 7.4 86 207-296 161-261 (444)
441 COG0467 RAD55 RecA-superfamily 94.4 0.042 9.1E-07 54.1 4.2 42 206-249 21-62 (260)
442 KOG2170 ATPase of the AAA+ sup 94.4 0.1 2.3E-06 50.9 6.6 51 181-231 83-133 (344)
443 PRK11650 ugpC glycerol-3-phosp 94.4 0.2 4.4E-06 51.6 9.3 23 208-230 30-52 (356)
444 cd00984 DnaB_C DnaB helicase C 94.4 0.22 4.8E-06 48.3 9.2 53 207-262 12-64 (242)
445 PRK00300 gmk guanylate kinase; 94.4 0.029 6.2E-07 53.0 2.9 25 207-231 4-28 (205)
446 PF06414 Zeta_toxin: Zeta toxi 94.4 0.093 2E-06 49.3 6.3 103 205-313 12-117 (199)
447 PRK10416 signal recognition pa 94.4 0.17 3.7E-06 51.2 8.5 26 206-231 112-137 (318)
448 cd02020 CMPK Cytidine monophos 94.4 0.024 5.3E-07 50.1 2.2 22 210-231 1-22 (147)
449 PF03205 MobB: Molybdopterin g 94.4 0.033 7.2E-07 49.0 3.0 39 209-248 1-39 (140)
450 PRK08149 ATP synthase SpaL; Va 94.4 0.17 3.6E-06 53.0 8.6 86 207-296 150-250 (428)
451 PRK03846 adenylylsulfate kinas 94.4 0.034 7.4E-07 52.2 3.3 25 206-230 22-46 (198)
452 PRK15115 response regulator Gl 94.3 0.11 2.3E-06 55.6 7.3 46 181-231 135-180 (444)
453 PRK12339 2-phosphoglycerate ki 94.3 0.034 7.4E-07 52.0 3.1 24 208-231 3-26 (197)
454 COG1936 Predicted nucleotide k 94.3 0.031 6.7E-07 50.1 2.6 20 210-229 2-21 (180)
455 PRK08927 fliI flagellum-specif 94.3 0.17 3.8E-06 53.0 8.5 86 207-296 157-257 (442)
456 PRK06793 fliI flagellum-specif 94.3 0.16 3.5E-06 53.2 8.2 88 207-297 155-256 (432)
457 PRK14738 gmk guanylate kinase; 94.3 0.041 8.9E-07 52.1 3.6 25 206-230 11-35 (206)
458 COG3840 ThiQ ABC-type thiamine 94.3 0.53 1.2E-05 42.7 10.2 36 207-245 24-59 (231)
459 PRK11432 fbpC ferric transport 94.3 0.25 5.3E-06 50.9 9.5 23 208-230 32-54 (351)
460 cd01129 PulE-GspE PulE/GspE Th 94.3 0.17 3.8E-06 49.7 8.1 81 208-298 80-160 (264)
461 PRK14737 gmk guanylate kinase; 94.3 0.037 7.9E-07 51.4 3.1 25 207-231 3-27 (186)
462 cd01135 V_A-ATPase_B V/A-type 94.3 0.22 4.8E-06 48.8 8.5 90 207-296 68-175 (276)
463 TIGR03496 FliI_clade1 flagella 94.3 0.13 2.9E-06 53.7 7.5 86 207-296 136-236 (411)
464 TIGR00455 apsK adenylylsulfate 94.2 0.27 5.9E-06 45.5 8.9 25 207-231 17-41 (184)
465 TIGR00764 lon_rel lon-related 94.2 0.12 2.5E-06 57.3 7.4 74 179-264 17-91 (608)
466 COG0541 Ffh Signal recognition 94.2 0.35 7.6E-06 49.9 10.2 75 189-265 79-156 (451)
467 COG0194 Gmk Guanylate kinase [ 94.2 0.065 1.4E-06 48.7 4.4 24 208-231 4-27 (191)
468 PRK12678 transcription termina 94.2 0.095 2.1E-06 56.1 6.3 86 207-296 415-512 (672)
469 PRK13947 shikimate kinase; Pro 94.2 0.031 6.8E-07 51.0 2.5 22 210-231 3-24 (171)
470 KOG0738 AAA+-type ATPase [Post 94.2 0.33 7.2E-06 49.1 9.7 34 21-54 12-45 (491)
471 COG2842 Uncharacterized ATPase 94.2 0.37 8.1E-06 47.1 9.9 121 179-313 71-191 (297)
472 PF04548 AIG1: AIG1 family; I 94.2 0.36 7.9E-06 45.8 9.9 22 210-231 2-23 (212)
473 PF03796 DnaB_C: DnaB-like hel 94.2 0.27 5.8E-06 48.3 9.2 56 208-266 19-74 (259)
474 PRK15064 ABC transporter ATP-b 94.1 0.38 8.3E-06 52.7 11.3 24 208-231 27-50 (530)
475 COG5635 Predicted NTPase (NACH 94.1 0.052 1.1E-06 62.5 4.7 138 208-350 222-371 (824)
476 CHL00206 ycf2 Ycf2; Provisiona 94.1 0.56 1.2E-05 57.0 12.9 26 207-232 1629-1654(2281)
477 smart00534 MUTSac ATPase domai 94.1 0.034 7.4E-07 51.6 2.7 21 210-230 1-21 (185)
478 TIGR02857 CydD thiol reductant 94.1 0.48 1E-05 51.9 12.1 24 207-230 347-370 (529)
479 KOG0729 26S proteasome regulat 94.1 0.22 4.8E-06 47.6 7.9 52 179-230 176-233 (435)
480 PRK11174 cysteine/glutathione 94.1 0.46 9.9E-06 52.8 12.0 25 207-231 375-399 (588)
481 cd02029 PRK_like Phosphoribulo 94.1 0.14 3E-06 49.8 6.8 77 210-288 1-85 (277)
482 cd01132 F1_ATPase_alpha F1 ATP 94.1 0.11 2.4E-06 50.8 6.2 86 207-296 68-170 (274)
483 PRK10078 ribose 1,5-bisphospho 94.1 0.038 8.2E-07 51.4 2.9 23 209-231 3-25 (186)
484 cd00820 PEPCK_HprK Phosphoenol 94.1 0.047 1E-06 45.3 3.1 22 208-229 15-36 (107)
485 cd00071 GMPK Guanosine monopho 94.1 0.034 7.3E-07 48.9 2.4 22 210-231 1-22 (137)
486 PRK13949 shikimate kinase; Pro 94.1 0.035 7.5E-07 50.7 2.5 22 210-231 3-24 (169)
487 COG0488 Uup ATPase components 94.1 0.13 2.8E-06 55.6 7.2 130 211-343 351-511 (530)
488 PRK07594 type III secretion sy 94.1 0.17 3.7E-06 53.0 7.9 86 207-296 154-254 (433)
489 PRK07721 fliI flagellum-specif 94.1 0.2 4.3E-06 52.9 8.4 26 206-231 156-181 (438)
490 KOG1970 Checkpoint RAD17-RFC c 94.0 0.24 5.2E-06 52.3 8.8 46 186-231 88-133 (634)
491 PRK05201 hslU ATP-dependent pr 94.0 0.13 2.9E-06 53.3 6.8 52 180-231 15-73 (443)
492 TIGR03258 PhnT 2-aminoethylpho 94.0 0.3 6.6E-06 50.4 9.6 24 208-231 31-54 (362)
493 PRK14530 adenylate kinase; Pro 94.0 0.036 7.8E-07 52.9 2.6 21 210-230 5-25 (215)
494 KOG0735 AAA+-type ATPase [Post 94.0 0.84 1.8E-05 49.8 12.8 180 180-384 667-870 (952)
495 PF01078 Mg_chelatase: Magnesi 94.0 0.083 1.8E-06 49.3 4.9 42 180-230 3-44 (206)
496 TIGR03375 type_I_sec_LssB type 94.0 0.34 7.3E-06 55.1 10.8 24 207-230 490-513 (694)
497 TIGR01313 therm_gnt_kin carboh 94.0 0.031 6.8E-07 50.6 2.0 21 211-231 1-21 (163)
498 COG0465 HflB ATP-dependent Zn 94.0 0.44 9.5E-06 51.7 10.9 58 177-234 147-209 (596)
499 PF00005 ABC_tran: ABC transpo 94.0 0.066 1.4E-06 46.8 4.0 24 208-231 11-34 (137)
500 cd00464 SK Shikimate kinase (S 94.0 0.038 8.3E-07 49.4 2.6 21 211-231 2-22 (154)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-72 Score=619.76 Aligned_cols=535 Identities=25% Similarity=0.414 Sum_probs=435.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhchHhHHHHH
Q 036323 4 AIVSAVLEQLISVAAKEANEGVRLAVGVGQEVEKLKRNFQAIQAVLHDAEHRQVREEGVRLWLDQLKDASYNMEDVLDEW 83 (583)
Q Consensus 4 ~~~~~~~~~l~~~l~~~~~~e~~~~~~v~~~i~~L~~~l~~i~~~l~~ae~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~ 83 (583)
+.++..++++.+. +.+++..+.++++.+..|+++|..++.++++++.++.....+..|...+++++|++||.++.|
T Consensus 3 ~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~ 78 (889)
T KOG4658|consen 3 ACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLF 78 (889)
T ss_pred eEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554 778899999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhhhhhhhhhhhccccccCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCccccc
Q 036323 84 ITARLKRQTEGVDHDNALVRDKKKKKKKKKKVCSFFPASSCFGFKQVFLHRDIALKIKAINQTLDDIAEQKDMFSFNVIN 163 (583)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~ 163 (583)
..+....+..+.-.. + ....+.. |++ .++++.+..+..+..++..+.+..+.++....-
T Consensus 79 ~v~~~~~~~~~~l~~----~-----~~~~~~~--------c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~ 137 (889)
T KOG4658|consen 79 LVEEIERKANDLLST----R-----SVERQRL--------CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVF 137 (889)
T ss_pred HHHHHHHHHhHHhhh----h-----HHHHHHH--------hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccce
Confidence 877665432211100 0 0001111 111 466777788888888888888887777654422
Q ss_pred ---CC--CCCCCCCccccccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc-cccc
Q 036323 164 ---SR--GKSEGMQSTSLIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND-VINN 237 (583)
Q Consensus 164 ---~~--~~~~~~~~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~ 237 (583)
.. .+.......+..+... ||.+..++++.+.|...+ ..+++|+||||+||||||+.++|+.. +..+
T Consensus 138 ~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~-------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~ 209 (889)
T KOG4658|consen 138 EVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD-------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNH 209 (889)
T ss_pred ecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC-------CCEEEEECCCcccHHHHHHHHhcccchhccc
Confidence 11 1111233444444455 999999999999998765 38999999999999999999999987 9999
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHhhcCccccc--cHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC
Q 036323 238 FEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLH--ELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL 315 (583)
Q Consensus 238 f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~--~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 315 (583)
|+.++||.||+.++...++.+|+..++....... ..+.+...|.+.|++|||||||||||+.. .|+.+..++|...
T Consensus 210 Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~ 287 (889)
T KOG4658|consen 210 FDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRE 287 (889)
T ss_pred CceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCcc
Confidence 9999999999999999999999999987544322 34688999999999999999999999864 6999999999998
Q ss_pred CCceEEEecCchHHHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhh
Q 036323 316 RGSKILITTRKETVARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL 394 (583)
Q Consensus 316 ~gs~IlvTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 394 (583)
+||+|++|||+..|+.. ++....++++.|+++|||+||++.+|.... ...+.++++|++|+++|+|+|||++++|+.|
T Consensus 288 ~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~m 366 (889)
T KOG4658|consen 288 NGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLL 366 (889)
T ss_pred CCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHh
Confidence 99999999999999998 777899999999999999999999986543 3445589999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhhhccc----cccccCCCcchhhccccCChHHhHHHHhhhccCCCCcccChHHHHHHHHHhccccc-
Q 036323 395 QFKRTKEEWQSALDSEMWQ----LEEFEGGLSAPLFLSYNDLPFEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVL- 469 (583)
Q Consensus 395 ~~~~~~~~w~~~l~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~- 469 (583)
+.+.+..+|+++++...+. .++..+.+.++|.+||+.||+++|.||+|||+||++|.|+++.|+.+|+||||+.+
T Consensus 367 a~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~ 446 (889)
T KOG4658|consen 367 ACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPL 446 (889)
T ss_pred cCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcc
Confidence 9999999999999876544 23345678999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHhhcccccceecCCCCcEEEEEEchhHHHHHHHhhc-----cceEEEeeCCCCCccccccCCCC
Q 036323 470 KGNNEMKVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQSLTN-----NECVALEVHGDEEPLSLINNSQD 544 (583)
Q Consensus 470 ~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~ 544 (583)
..+.+.++.|+.|+.+|++++|++..... ++..+|+|||+|||+|.++|+ .|+.++..+..... .+....+.
T Consensus 447 ~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~ 523 (889)
T KOG4658|consen 447 DGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWN 523 (889)
T ss_pred ccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchh
Confidence 56788999999999999999999875543 566789999999999999999 67665554311110 12234578
Q ss_pred CeeEEEEEcccccCccccccCCCCceEEEecCCc
Q 036323 545 KLRHSISVLDKVASFPVSIFNAKKLRSLLIRSPL 578 (583)
Q Consensus 545 ~~r~ls~~~~~~~~~~~~~~~~~~lrtl~~~~~~ 578 (583)
.+||++++++.....+... ++++||||+++++.
T Consensus 524 ~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNS 556 (889)
T ss_pred heeEEEEeccchhhccCCC-CCCccceEEEeecc
Confidence 9999999988766555553 67789999988863
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.1e-46 Score=374.52 Aligned_cols=278 Identities=34% Similarity=0.586 Sum_probs=224.8
Q ss_pred chhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhh
Q 036323 185 RDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELE 264 (583)
Q Consensus 185 R~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (583)
||.++++|.+.|.... .+.++|+|+|+||+||||||..++++..++.+|+.++|++++...+...++..|+..+.
T Consensus 1 re~~~~~l~~~L~~~~-----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT-----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC-----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 67999999999999999999999997668999999999999999999999999999998
Q ss_pred cCcc---ccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHHhhhcC-CCeEE
Q 036323 265 GSAI---DLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVARMMES-TDIVY 340 (583)
Q Consensus 265 ~~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~~-~~~~~ 340 (583)
.... ...+.+.....+.+.|.++++||||||||+.. .|+.+...++....|++||||||+..++..+.. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 8743 45677789999999999999999999998654 788888777777789999999999988876655 67899
Q ss_pred cCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccCCCHHHHHHHHhhhcccccc---c
Q 036323 341 VQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSALDSEMWQLEE---F 417 (583)
Q Consensus 341 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~---~ 417 (583)
+++|+.++|++||.+.++... ....+.+++.+++|+++|+|+||||+++|++|+.+.+..+|..++++......+ .
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999987554 223345577899999999999999999999997666778899988765544322 2
Q ss_pred cCCCcchhhccccCChHHhHHHHhhhccCCCCcccChHHHHHHHHHhcccccc
Q 036323 418 EGGLSAPLFLSYNDLPFEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLK 470 (583)
Q Consensus 418 ~~~i~~~l~~sy~~L~~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~ 470 (583)
...+..++.+||+.||+++|+||+|||+||+++.|+++.|+++|++|||+...
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 45588899999999999999999999999999999999999999999999764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-39 Score=381.80 Aligned_cols=361 Identities=18% Similarity=0.251 Sum_probs=268.7
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEe---CCCC---
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCV---SDPF--- 250 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~--- 250 (583)
.+...+|||+..+++|..+|... ...+++|+|+||||+||||||+.+|+ ++..+|++.+|+.. +...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~-----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE-----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc-----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhc
Confidence 45677999999999999988543 35689999999999999999999998 57788988888742 1110
Q ss_pred --------C-hHHHHHHHHHHhhcCcc-ccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceE
Q 036323 251 --------D-EFNVAKATIEELEGSAI-DLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKI 320 (583)
Q Consensus 251 --------~-~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 320 (583)
. ...+..+++..+..... .... ...+++.+.++|+||||||||+. .+|+.+.......++|++|
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrI 327 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRI 327 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEE
Confidence 0 12234444554433211 1111 14567778999999999999754 4788877665666789999
Q ss_pred EEecCchHHHhhhcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccCCCH
Q 036323 321 LITTRKETVARMMESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKRTK 400 (583)
Q Consensus 321 lvTtR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~ 400 (583)
|||||+..++..++..++|+++.|+.++||+||+++||+... .++.+.+++++|+++|+|+||||+++|++|+.+ +.
T Consensus 328 IiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~ 404 (1153)
T PLN03210 328 IVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DK 404 (1153)
T ss_pred EEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CH
Confidence 999999999987777789999999999999999999997543 345688999999999999999999999999876 68
Q ss_pred HHHHHHHhhhccccccccCCCcchhhccccCChH-HhHHHHhhhccCCCCcccChHHHHHHHHHhccccccCCchHHHHH
Q 036323 401 EEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPF-EIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLKGNNEMKVIG 479 (583)
Q Consensus 401 ~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~ 479 (583)
.+|..++.+.... ....|..+|++||+.|++ ..|.||+++|+|+.+..++ .+..|++.+....
T Consensus 405 ~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~---------- 468 (1153)
T PLN03210 405 EDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV---------- 468 (1153)
T ss_pred HHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------
Confidence 9999999886543 245789999999999987 5999999999999886543 4777888765432
Q ss_pred HHHHHHHhhcccccceecCCCCcEEEEEEchhHHHHHHHhhccce-------EEEeeCCCCCccccccCCCCCeeEEEEE
Q 036323 480 LEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQSLTNNEC-------VALEVHGDEEPLSLINNSQDKLRHSISV 552 (583)
Q Consensus 480 ~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~~r~ls~~ 552 (583)
+..++.|+++|||+... + .|.|||++|++|+.++.++. +.....+-...+ .......+++++++.
T Consensus 469 ~~~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl-~~~~g~~~v~~i~l~ 540 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL-EDNTGTKKVLGITLD 540 (1153)
T ss_pred hhChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH-HhCcccceeeEEEec
Confidence 22389999999998532 1 58999999999999987653 111110000000 012345788999887
Q ss_pred cccccCc---cccccCCCCceEEEecCC
Q 036323 553 LDKVASF---PVSIFNAKKLRSLLIRSP 577 (583)
Q Consensus 553 ~~~~~~~---~~~~~~~~~lrtl~~~~~ 577 (583)
.+...++ +..+.+|++||.|.++.+
T Consensus 541 ~~~~~~~~i~~~aF~~m~~L~~L~~~~~ 568 (1153)
T PLN03210 541 IDEIDELHIHENAFKGMRNLLFLKFYTK 568 (1153)
T ss_pred cCccceeeecHHHHhcCccccEEEEecc
Confidence 6544322 234677888888877543
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.64 E-value=1.3e-14 Score=168.98 Aligned_cols=295 Identities=14% Similarity=0.164 Sum_probs=184.0
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHH
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNV 255 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~ 255 (583)
.....++-|+.-.+.|.. ....+++.|+|++|.||||++..+... +..++|+++.. +.+...+
T Consensus 11 ~~~~~~~~R~rl~~~l~~----------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f 74 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG----------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERF 74 (903)
T ss_pred CCccccCcchHHHHHHhc----------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHH
Confidence 344567777755554432 135789999999999999999998852 22589999964 4466667
Q ss_pred HHHHHHHhhcCccc-------------cccHHHHHHHHHHHhc--CCceeEEEcCCCcccccchHh-hHHhhccCCCCce
Q 036323 256 AKATIEELEGSAID-------------LHELNSLLRRIGANIA--GQKFFMVLDNLWTDDYRKWEP-FRNCLMNGLRGSK 319 (583)
Q Consensus 256 ~~~il~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~ 319 (583)
+..++..+...... ..+...+...+...+. +.+++|||||++..+...... +...+.....+.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 77777777422111 0122333333433332 679999999997755444443 3333444566778
Q ss_pred EEEecCchHHHh--hh-cCCCeEEcC----CCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhh
Q 036323 320 ILITTRKETVAR--MM-ESTDIVYVQ----GLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGS 392 (583)
Q Consensus 320 IlvTtR~~~v~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 392 (583)
+|||||...... .+ ......++. +|+.+|+.+||....... - ..+....|.+.|+|+|+++..++.
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~----~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---I----EAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---C----CHHHHHHHHHHhCChHHHHHHHHH
Confidence 889999742111 11 112345555 999999999998765321 1 144567899999999999999887
Q ss_pred hhccCCC-HHHHHHHHhhhcccccc-ccCCCcchh-hccccCChHHhHHHHhhhccCCCCcccChHHHHHHHHHhccccc
Q 036323 393 LLQFKRT-KEEWQSALDSEMWQLEE-FEGGLSAPL-FLSYNDLPFEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVL 469 (583)
Q Consensus 393 ~L~~~~~-~~~w~~~l~~~~~~~~~-~~~~i~~~l-~~sy~~L~~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~ 469 (583)
.+..... ..... +.+.. ....+...+ .-.++.||++.+..+..+|+++ . ++.+.+-.+. |
T Consensus 228 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l~~~l~---~---- 290 (903)
T PRK04841 228 SARQNNSSLHDSA-------RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDALIVRVT---G---- 290 (903)
T ss_pred HHhhCCCchhhhh-------HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHHHHHHc---C----
Confidence 7754432 11111 11111 112234433 3347899999999999999997 3 4433222211 1
Q ss_pred cCCchHHHHHHHHHHHHhhcccccceecCCCCcEEEEEEchhHHHHHHHhh
Q 036323 470 KGNNEMKVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQSLT 520 (583)
Q Consensus 470 ~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 520 (583)
.+.+...+++|.+.+++.....+ ++ ..|+.|++++++++...
T Consensus 291 ------~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ------EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ------CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 11246789999999997532221 11 25889999999998764
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=1.8e-12 Score=136.17 Aligned_cols=320 Identities=12% Similarity=0.079 Sum_probs=186.4
Q ss_pred ccccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHH
Q 036323 175 SLIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFN 254 (583)
Q Consensus 175 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (583)
+...+..|+||++++++|...|...- .......+.|+|++|+|||++++.++++.......-..+++++....+...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~---~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPAL---RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHh---CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 33456789999999999999985432 123445678999999999999999998543322223466777777777888
Q ss_pred HHHHHHHHhhcCc-c-ccccHHHHHHHHHHHhc--CCceeEEEcCCCccc----ccchHhhHHhhccCCCC--ceEEEec
Q 036323 255 VAKATIEELEGSA-I-DLHELNSLLRRIGANIA--GQKFFMVLDNLWTDD----YRKWEPFRNCLMNGLRG--SKILITT 324 (583)
Q Consensus 255 ~~~~il~~l~~~~-~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~g--s~IlvTt 324 (583)
++..++.++.... + ...+..++...+.+.+. +++.+||||+++.-. .+.+..+...+.. ..+ ..+|.++
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~ 180 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEE
Confidence 8999999987522 1 22345666677777665 456899999996532 1122223222221 223 2355555
Q ss_pred CchHHHhhhc-------CCCeEEcCCCChHHHHHHHHHHhccCC--CCCCCchHHHHHHHHhhhCCCCccchhhhhhhh-
Q 036323 325 RKETVARMME-------STDIVYVQGLSELECWSLFRRFALSGR--TPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL- 394 (583)
Q Consensus 325 R~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L- 394 (583)
....+...+. ....+.+.+++.++..+++...+.... ....+..++.+++......|..+.|+..+-...
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5443322111 135688999999999999988763221 112222333333333333455777776654321
Q ss_pred -c--c-C--CCHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhccC-CC-CcccChHHHHHHH--HHh
Q 036323 395 -Q--F-K--RTKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCAIF-PK-SSYLKKDELVKLW--MAQ 464 (583)
Q Consensus 395 -~--~-~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~lsif-p~-~~~i~~~~Li~~W--~ae 464 (583)
. . . -+.+....+++... .....-.+..||.+.|..+..++.. .. ...+....+.... +++
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 1 1 1 14566665555431 1223456789999988877665533 21 1235555554332 222
Q ss_pred ccccccCCchHHHHHHHHHHHHhhcccccceec--CCCCcEEEEEEchh
Q 036323 465 GYIVLKGNNEMKVIGLEYFDCLASRSFYQQFVK--DDDNMVIGCTMHDV 511 (583)
Q Consensus 465 g~i~~~~~~~~e~~~~~~l~~L~~rsll~~~~~--~~~~~~~~~~mHdl 511 (583)
.+-. ...+ ......|++.|...|+|..... +..|+.+.++++.-
T Consensus 331 ~~~~--~~~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~ 376 (394)
T PRK00411 331 ELGY--EPRT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYD 376 (394)
T ss_pred HcCC--CcCc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCC
Confidence 1100 0011 1234569999999999986543 33466666666533
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.41 E-value=2.1e-11 Score=130.91 Aligned_cols=301 Identities=16% Similarity=0.165 Sum_probs=195.2
Q ss_pred cccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHH
Q 036323 176 LIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFN 254 (583)
Q Consensus 176 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ 254 (583)
+..+.+.+-|..- .+.|... ...+.+.|..++|.|||||+...+. ....-..+.|.++.+ +.+...
T Consensus 15 P~~~~~~v~R~rL----~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 15 PVRPDNYVVRPRL----LDRLRRA------NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred CCCcccccccHHH----HHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHH
Confidence 3345566667644 4444322 4689999999999999999999875 122334689999865 556788
Q ss_pred HHHHHHHHhhcCccc-------------cccHHHHHHHHHHHhc--CCceeEEEcCCCcccccchHh-hHHhhccCCCCc
Q 036323 255 VAKATIEELEGSAID-------------LHELNSLLRRIGANIA--GQKFFMVLDNLWTDDYRKWEP-FRNCLMNGLRGS 318 (583)
Q Consensus 255 ~~~~il~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs 318 (583)
++..++..+..-.+. ..+...+...+...+. .++.+|||||.+-........ +...+...+++-
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l 161 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENL 161 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCe
Confidence 888888888743221 2334455555555443 468999999986533333333 555556677889
Q ss_pred eEEEecCchHHHhh---hcCCCeEEcC----CCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 319 KILITTRKETVARM---MESTDIVYVQ----GLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 319 ~IlvTtR~~~v~~~---~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
.+|+|||+..-... --....++++ .|+.+|+.++|....... -+ ..-.+.|.+..+|-+-|+..++
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---Ld----~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---LD----AADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---CC----hHHHHHHHhhcccHHHHHHHHH
Confidence 99999998643221 1112333433 588999999998865211 11 3446789999999999999999
Q ss_pred hhhccCCCHHHHHHHHhhhccccccccCCCcc-hhhccccCChHHhHHHHhhhccCCCCcccChHHHHHHHHHhcccccc
Q 036323 392 SLLQFKRTKEEWQSALDSEMWQLEEFEGGLSA-PLFLSYNDLPFEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLK 470 (583)
Q Consensus 392 ~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~ 470 (583)
=.++.+.+.+.-...+... .+.+.. ...--++.||+++|..++-||+++.= . ..|+..-
T Consensus 235 La~~~~~~~~q~~~~LsG~-------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L--------- 294 (894)
T COG2909 235 LALRNNTSAEQSLRGLSGA-------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL--------- 294 (894)
T ss_pred HHccCCCcHHHHhhhccch-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH---------
Confidence 8887444444333322211 111111 13345788999999999999999752 1 2333321
Q ss_pred CCchHHHHHHHHHHHHhhcccccceecCCCCcEEEEEEchhHHHHHHHhhcc
Q 036323 471 GNNEMKVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQSLTNN 522 (583)
Q Consensus 471 ~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 522 (583)
+-++-+...+++|.+++|+-..-.+. + ..|+.|.++.||.+.--..
T Consensus 295 ---tg~~ng~amLe~L~~~gLFl~~Ldd~-~--~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 ---TGEENGQAMLEELERRGLFLQRLDDE-G--QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ---hcCCcHHHHHHHHHhCCCceeeecCC-C--ceeehhHHHHHHHHhhhcc
Confidence 22344677899999999986433222 2 2799999999998775543
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=8.5e-11 Score=122.28 Aligned_cols=306 Identities=12% Similarity=0.050 Sum_probs=174.5
Q ss_pred cccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc-ccC---ceEEEEEeCCCCC
Q 036323 176 LIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI-NNF---EIRVRVCVSDPFD 251 (583)
Q Consensus 176 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~ 251 (583)
...|..++||++++++|...|...- .+.....+.|+|++|+|||++++.++++.... ... -..+|+++....+
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~---~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPIL---RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHH---cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 3445689999999999999986422 12345578999999999999999998752211 111 2457788877777
Q ss_pred hHHHHHHHHHHhhc---Ccc-ccccHHHHHHHHHHHhc--CCceeEEEcCCCccccc---chHhhHHhh-ccCC--CCce
Q 036323 252 EFNVAKATIEELEG---SAI-DLHELNSLLRRIGANIA--GQKFFMVLDNLWTDDYR---KWEPFRNCL-MNGL--RGSK 319 (583)
Q Consensus 252 ~~~~~~~il~~l~~---~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~---~~~~l~~~l-~~~~--~gs~ 319 (583)
...++..++.++.. ..+ ...+..+....+.+.+. +++++||||+++.-... ....+.... .... ....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 78899999998842 211 12234445555555553 56789999999654211 112222110 1111 2334
Q ss_pred EEEecCchHHHhhh----c-C--CCeEEcCCCChHHHHHHHHHHhccC-CCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 320 ILITTRKETVARMM----E-S--TDIVYVQGLSELECWSLFRRFALSG-RTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 320 IlvTtR~~~v~~~~----~-~--~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
+|.++........+ . . ...+.+.|++.++..+++...+... ....-.++..+....++..+.|.|..+..+.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45555433322111 1 1 2568899999999999999876311 1111222333444556777778885443222
Q ss_pred -hhh----cc-C--CCHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhccCC--CCcccChHHHHHHH
Q 036323 392 -SLL----QF-K--RTKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCAIFP--KSSYLKKDELVKLW 461 (583)
Q Consensus 392 -~~L----~~-~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~lsifp--~~~~i~~~~Li~~W 461 (583)
... .. . -+.+....+++... .....-++..||.+.+..+..+...- ++..+....+...+
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 111 11 1 24455554444321 12234466789998887666554221 33346666666533
Q ss_pred HH-hccccccCCchHHHHHHHHHHHHhhccccccee
Q 036323 462 MA-QGYIVLKGNNEMKVIGLEYFDCLASRSFYQQFV 496 (583)
Q Consensus 462 ~a-eg~i~~~~~~~~e~~~~~~l~~L~~rsll~~~~ 496 (583)
-. ...+... .........+++.|...|++....
T Consensus 318 ~~~~~~~~~~--~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 318 KEVCEDIGVD--PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHhcCCC--CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11 1111111 122355678899999999998754
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.37 E-value=6.3e-11 Score=117.74 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=115.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHH----H
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGA----N 283 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~ 283 (583)
..++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..+...++..... .+.......+.+ .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 4588999999999999999999853321 11 22333 233456778888888887655332 222223333332 2
Q ss_pred -hcCCceeEEEcCCCcccccchHhhHHhhcc---CCCCceEEEecCchHHHhhh--------c--CCCeEEcCCCChHHH
Q 036323 284 -IAGQKFFMVLDNLWTDDYRKWEPFRNCLMN---GLRGSKILITTRKETVARMM--------E--STDIVYVQGLSELEC 349 (583)
Q Consensus 284 -l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~IlvTtR~~~v~~~~--------~--~~~~~~l~~L~~~ea 349 (583)
..+++.+||+||+|..+...++.+...... ......|++|.... ....+ . ....+++++|+.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 267889999999987665566665533221 12223455665432 21111 1 134678999999999
Q ss_pred HHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhh
Q 036323 350 WSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL 394 (583)
Q Consensus 350 ~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 394 (583)
.+++...+..........-..+..+.|++.|+|+|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764322111122335778899999999999999988776
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.36 E-value=3.9e-11 Score=121.48 Aligned_cols=268 Identities=15% Similarity=0.105 Sum_probs=144.5
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
.+|+|++..+++|..++.... ........+.|+|++|+|||+||+.+++... ..+ ..+..+.... ...+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~--~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~-~~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAK--MRQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEK-PGDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHH--hcCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcC-chhHHHH
Confidence 469999999999999886432 0123355688999999999999999988432 122 1111111111 1112222
Q ss_pred HHHhhcCcc----cccc-HHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHHhhhc
Q 036323 260 IEELEGSAI----DLHE-LNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVARMME 334 (583)
Q Consensus 260 l~~l~~~~~----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~ 334 (583)
+..+..... +... .......+...+.+.+..+|+++..+. ..+.. ...+.+-|..||+...+...+.
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~~------~~~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVRL------DLPPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cceee------cCCCeEEEEecCCccccCHHHH
Confidence 222221110 0000 011122233334444444455443211 11110 1123455666777654433221
Q ss_pred --CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhc------cCC--CHHHHH
Q 036323 335 --STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQ------FKR--TKEEWQ 404 (583)
Q Consensus 335 --~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~------~~~--~~~~w~ 404 (583)
....+.+++++.++..+++.+.+...... -..+....|++.|+|.|-.+..++..+. ... +.+...
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~ 223 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL 223 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 13567899999999999999887533221 1255678899999999976655544321 000 111111
Q ss_pred HHHhhhccccccccCCCcchhhccccCChHHhHHHHh-hhccCCCCcccChHHHHHHHHHhccccccCCchHHHHHHHHH
Q 036323 405 SALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFS-YCAIFPKSSYLKKDELVKLWMAQGYIVLKGNNEMKVIGLEYF 483 (583)
Q Consensus 405 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l 483 (583)
.. ...+...|..|+++.+..+. .+..++.+ .+..+.+.... | .....++..+
T Consensus 224 ~~---------------l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~ 276 (305)
T TIGR00635 224 KA---------------LEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVY 276 (305)
T ss_pred HH---------------HHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhh
Confidence 11 11256678899998887776 55777654 34544444332 1 1223456667
Q ss_pred H-HHhhcccccc
Q 036323 484 D-CLASRSFYQQ 494 (583)
Q Consensus 484 ~-~L~~rsll~~ 494 (583)
+ .|++++||..
T Consensus 277 e~~Li~~~li~~ 288 (305)
T TIGR00635 277 EPYLLQIGFLQR 288 (305)
T ss_pred hHHHHHcCCccc
Confidence 7 6999999963
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.33 E-value=2.6e-11 Score=123.77 Aligned_cols=279 Identities=15% Similarity=0.112 Sum_probs=145.7
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
.-.+|+|+++.++.+..++.... ........+.|+|++|+|||+||+.+++... ..+ .++..+ .......+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~--~~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~ 94 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAK--KRGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLA 94 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHH--hcCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHH
Confidence 34679999999999988885421 0123456788999999999999999998532 111 111111 111111222
Q ss_pred HHHHHhhcCcc-ccccH----HHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHHhh
Q 036323 258 ATIEELEGSAI-DLHEL----NSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVARM 332 (583)
Q Consensus 258 ~il~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~ 332 (583)
.++..+..... -..+. ....+.+...+.+.+..+|+|+..+.. .+. . ...+.+-|..|++...+...
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~~~---~---~l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--SIR---L---DLPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--cee---e---cCCCceEEeecCCcccCCHH
Confidence 22222211100 00000 001111222223333333333321110 000 0 01123456667775443332
Q ss_pred hcC--CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccCCCHHHHHHHHhhh
Q 036323 333 MES--TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSALDSE 410 (583)
Q Consensus 333 ~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~ 410 (583)
+.. ...+++++++.++..+++.+.+......- ..+....|++.|+|.|-.+..+...+ ..|.......
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~ 236 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG 236 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC
Confidence 211 35689999999999999998875433222 24567889999999996555444332 1222111100
Q ss_pred ccccccccCCCcchhhccccCChHHhHHHHh-hhccCCCCcccChHHHHHHHHHhccccccCCchHHHHHHHHHH-HHhh
Q 036323 411 MWQLEEFEGGLSAPLFLSYNDLPFEIKRCFS-YCAIFPKSSYLKKDELVKLWMAQGYIVLKGNNEMKVIGLEYFD-CLAS 488 (583)
Q Consensus 411 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~-~L~~ 488 (583)
.-. ...-......+...+..|++..+..+. .+..|+.+ .+..+.+.... | ...+.+++.++ .|++
T Consensus 237 ~I~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 237 VIT-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQ 303 (328)
T ss_pred CCC-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHH
Confidence 000 000111223456778889988888775 77788776 46666654432 1 11223444556 8999
Q ss_pred cccccce
Q 036323 489 RSFYQQF 495 (583)
Q Consensus 489 rsll~~~ 495 (583)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 9999743
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.32 E-value=4.9e-12 Score=122.64 Aligned_cols=195 Identities=19% Similarity=0.167 Sum_probs=99.4
Q ss_pred eeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH--
Q 036323 182 VRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT-- 259 (583)
Q Consensus 182 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-- 259 (583)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+.... ..+ ..+|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~-------~~~~~~l~G~rg~GKTsLl~~~~~~~~~-~~~-~~~y~~~~~~~~~-~~~~~~~~ 70 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-------PSQHILLYGPRGSGKTSLLKEFINELKE-KGY-KVVYIDFLEESNE-SSLRSFIE 70 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-------cCcEEEEEcCCcCCHHHHHHHHHHHhhh-cCC-cEEEEecccchhh-hHHHHHHH
Confidence 799999999999998643 2568899999999999999999884311 111 3334443333222 222222
Q ss_pred --------HHHhhcCcc----------ccccHHHHHHHHHHHhc--CCceeEEEcCCCccc------ccchHhhHHhhcc
Q 036323 260 --------IEELEGSAI----------DLHELNSLLRRIGANIA--GQKFFMVLDNLWTDD------YRKWEPFRNCLMN 313 (583)
Q Consensus 260 --------l~~l~~~~~----------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~ 313 (583)
...+....+ ...........+.+.+. +++++||+||+.... ..-...+...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 71 ETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 111211100 01111222223333332 345999999995543 1112223333333
Q ss_pred --CCCCceEEEecCchHHHhh--------hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 314 --GLRGSKILITTRKETVARM--------MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 314 --~~~gs~IlvTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
......+|+++.+...... .+....+.+++|+.+++++++....-.. ..- +.-.+..++|+..+||+
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCC
Confidence 2233334444443433322 2234569999999999999999975322 111 12255568899999999
Q ss_pred ccchhh
Q 036323 384 PLAAKT 389 (583)
Q Consensus 384 PLai~~ 389 (583)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998764
No 12
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.24 E-value=1.5e-10 Score=130.86 Aligned_cols=314 Identities=14% Similarity=0.097 Sum_probs=183.3
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEE---EEEeCCCCCh---HH
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRV---RVCVSDPFDE---FN 254 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~---~~ 254 (583)
.++||+.|++.|...+.... .+...++.|.|.+|||||+|+++|... +.+.+...+ +-......+. ..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~----~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq 74 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS----KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQ 74 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh----CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHH
Confidence 37899999999999997654 355679999999999999999999874 222211111 1111222211 12
Q ss_pred HHHHHHHHh-------------------hcCcc-----------------c-----cccHH-----HHHHHHHHHh-cCC
Q 036323 255 VAKATIEEL-------------------EGSAI-----------------D-----LHELN-----SLLRRIGANI-AGQ 287 (583)
Q Consensus 255 ~~~~il~~l-------------------~~~~~-----------------~-----~~~~~-----~~~~~l~~~l-~~k 287 (583)
.+++++.++ +.... . ..... .....+.... +.+
T Consensus 75 ~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~ 154 (849)
T COG3899 75 AFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEH 154 (849)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccC
Confidence 233333332 11100 0 00000 1222222333 356
Q ss_pred ceeEEEcCCCcccccchHhhHHhhccCCC------CceEEEecCch--HHHhhhcCCCeEEcCCCChHHHHHHHHHHhcc
Q 036323 288 KFFMVLDNLWTDDYRKWEPFRNCLMNGLR------GSKILITTRKE--TVARMMESTDIVYVQGLSELECWSLFRRFALS 359 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~------gs~IlvTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 359 (583)
+.++|+||+++.|....+.+......... ..-.+.|.+.. ...........+.|.||+..+...+.......
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 99999999988777666655444333211 11223333332 22222334678999999999999999988743
Q ss_pred CCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccCC------CHHHHHHHHhhhccccccccCCCcchhhccccCCh
Q 036323 360 GRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKR------TKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLP 433 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~------~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 433 (583)
... ...+....|+++..|+|+.+..+-..+.... +...|..-..+.. .....+.+...+..-.+.||
T Consensus 235 ~~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~--~~~~~~~vv~~l~~rl~kL~ 307 (849)
T COG3899 235 TKL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG--ILATTDAVVEFLAARLQKLP 307 (849)
T ss_pred ccc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC--CchhhHHHHHHHHHHHhcCC
Confidence 221 2245677899999999999999998887652 3334433222111 11111224445788899999
Q ss_pred HHhHHHHhhhccCCCCcccChHHHHHHHHHhccccccCCchHHHHHHHHHHHHhhcccccceecCCC---CcEE-EEEEc
Q 036323 434 FEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLKGNNEMKVIGLEYFDCLASRSFYQQFVKDDD---NMVI-GCTMH 509 (583)
Q Consensus 434 ~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~---~~~~-~~~mH 509 (583)
...|..+...|++...| +.+.|...|- ......+...++.|....++-..+.... .... +-..|
T Consensus 308 ~~t~~Vl~~AA~iG~~F--~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 308 GTTREVLKAAACIGNRF--DLDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHHhCccC--CHHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 99999999999998764 5666766652 1344556665666655555432211111 1111 11578
Q ss_pred hhHHHHHHHh
Q 036323 510 DVVHDFAQSL 519 (583)
Q Consensus 510 dlv~~~a~~~ 519 (583)
++|++.|-..
T Consensus 376 ~~vqqaaY~~ 385 (849)
T COG3899 376 DRVQQAAYNL 385 (849)
T ss_pred HHHHHHHhcc
Confidence 8888887543
No 13
>PF05729 NACHT: NACHT domain
Probab=99.12 E-value=5.3e-10 Score=102.20 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=88.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcccccc----CceEEEEEeCCCCChH---HHHHHHHHHhhcCccccccHHHHHHHHH
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINN----FEIRVRVCVSDPFDEF---NVAKATIEELEGSAIDLHELNSLLRRIG 281 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 281 (583)
|++.|+|.+|+||||+++.++.+...... +...+|++........ .+...+........ .........+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHHH
Confidence 57899999999999999998875332222 4566677765543322 23333333332221 11111111111
Q ss_pred HHhcCCceeEEEcCCCccccc-------chHhhH-Hhhcc-CCCCceEEEecCchHH---HhhhcCCCeEEcCCCChHHH
Q 036323 282 ANIAGQKFFMVLDNLWTDDYR-------KWEPFR-NCLMN-GLRGSKILITTRKETV---ARMMESTDIVYVQGLSELEC 349 (583)
Q Consensus 282 ~~l~~k~~LlVlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~IlvTtR~~~v---~~~~~~~~~~~l~~L~~~ea 349 (583)
...++++||||++++.... .+..+. ..+.. ..++++++||+|.... .........+++.+|++++.
T Consensus 78 --~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 78 --EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred --HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2578999999999653221 122323 23333 3678999999998665 33344456899999999999
Q ss_pred HHHHHHHh
Q 036323 350 WSLFRRFA 357 (583)
Q Consensus 350 ~~Lf~~~a 357 (583)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998764
No 14
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.02 E-value=3.6e-08 Score=107.26 Aligned_cols=307 Identities=11% Similarity=0.046 Sum_probs=164.7
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccc---cccC--ceEEEEEeCCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV---INNF--EIRVRVCVSDPFD 251 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~ 251 (583)
..|..+.|||+|+++|...|...-. +.....++.|+|++|+|||++++.|.+.... .... -.+++|++.....
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIk--gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIK--QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHh--cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 3456899999999999998865320 1223467789999999999999999864311 1111 2356777777677
Q ss_pred hHHHHHHHHHHhhcCcc-ccccHHHHHHHHHHHhc---CCceeEEEcCCCcccccchHhhHHhhcc-CCCCceEEE--ec
Q 036323 252 EFNVAKATIEELEGSAI-DLHELNSLLRRIGANIA---GQKFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILI--TT 324 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~Ilv--Tt 324 (583)
...++..|..++....+ ...........+...+. ....+||||+++.-....-+.|...+.. ...+++|++ +|
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEec
Confidence 88888888888854432 22223344445554442 2245899999954221111223333321 223455444 33
Q ss_pred CchHHH----hhhcC---CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccC
Q 036323 325 RKETVA----RMMES---TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFK 397 (583)
Q Consensus 325 R~~~v~----~~~~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~ 397 (583)
.+.... ..+.+ ...+...|.+.++-.+++...+......-.+..++-+++.++...|-.=.||.++-.+....
T Consensus 910 NdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik 989 (1164)
T PTZ00112 910 NTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK 989 (1164)
T ss_pred CchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc
Confidence 322111 11111 23467799999999999998875321112223333444444444444555555554333221
Q ss_pred C----CHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhccC-C--CCcccChHHHHHHH--HHhcccc
Q 036323 398 R----TKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCAIF-P--KSSYLKKDELVKLW--MAQGYIV 468 (583)
Q Consensus 398 ~----~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~lsif-p--~~~~i~~~~Li~~W--~aeg~i~ 468 (583)
. +.++...+..... ...+.-....||.+.|-.+..+... - ....++...+.... +++..-.
T Consensus 990 egskVT~eHVrkAleeiE----------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk 1059 (1164)
T PTZ00112 990 RGQKIVPRDITEATNQLF----------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGK 1059 (1164)
T ss_pred CCCccCHHHHHHHHHHHH----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhh
Confidence 1 2233333332210 1123344567898877766544322 1 12245555554443 2220000
Q ss_pred ccCCchHHHHHHHHHHHHhhcccccce
Q 036323 469 LKGNNEMKVIGLEYFDCLASRSFYQQF 495 (583)
Q Consensus 469 ~~~~~~~e~~~~~~l~~L~~rsll~~~ 495 (583)
.-+....-.....|+.+|...|+|...
T Consensus 1060 ~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1060 YIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 001111112667889999999998653
No 15
>PRK06893 DNA replication initiation factor; Validated
Probab=98.94 E-value=1.2e-08 Score=98.46 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=95.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
.+.+.|+|++|+|||+|++.+++. .......+.|+++... .... . .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~-----------------~----~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFS-----------------P----AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhh-----------------H----HHHhhcc-c
Confidence 357899999999999999999985 2222334456665311 0000 0 1111122 3
Q ss_pred ceeEEEcCCCccc-ccchHh-hHHhhccC-CCCceE-EEecCc---------hHHHhhhcCCCeEEcCCCChHHHHHHHH
Q 036323 288 KFFMVLDNLWTDD-YRKWEP-FRNCLMNG-LRGSKI-LITTRK---------ETVARMMESTDIVYVQGLSELECWSLFR 354 (583)
Q Consensus 288 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~I-lvTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 354 (583)
.-+|||||+|... ...|+. +...+... ..|..+ |+|+.. +.+...+.....+++++++.++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3599999998632 234553 44434322 235555 455544 3455555556789999999999999999
Q ss_pred HHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhh
Q 036323 355 RFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL 394 (583)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 394 (583)
+.+......- -+++..-|++.+.|..-.+..+-..|
T Consensus 172 ~~a~~~~l~l----~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIEL----SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9886443222 25677889999988776665554433
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.86 E-value=2.3e-08 Score=105.28 Aligned_cols=179 Identities=17% Similarity=0.213 Sum_probs=106.6
Q ss_pred CCceeechhHHHH---HHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHH
Q 036323 179 VSEVRGRDEEMRS---IKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 179 ~~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (583)
-.+|+|++..+.. |..++... ....+.|+|++|+||||||+.+++. ....| +.++........
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~-------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ 76 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG-------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKD 76 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC-------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHH
Confidence 3468888877665 77777432 3557888999999999999999874 22222 222221111111
Q ss_pred HHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE--ecCchHH--H
Q 036323 256 AKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI--TTRKETV--A 330 (583)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TtR~~~v--~ 330 (583)
.+.+ ....... ..+++.+|+||+++..+....+.|...+.. |..+++ ||.+... .
T Consensus 77 ir~i-----------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 77 LREV-----------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVN 136 (413)
T ss_pred HHHH-----------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhcc
Confidence 1122 2222111 145788999999987655555656555433 444444 3444321 1
Q ss_pred hh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhh
Q 036323 331 RM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGS 392 (583)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 392 (583)
.. ......+.+.+++.++...++.+.+....... .+...+....|++.|+|.|..+..+..
T Consensus 137 ~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 137 PALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11 22257899999999999999988653211100 022255677899999999986654443
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.5e-08 Score=100.71 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=96.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHH-HHHh
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRI-GANI 284 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l 284 (583)
+.+....+||++|+||||||+.+... ....| ..++...+-.+ ++..+.+.- +...
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvk-----------------dlr~i~e~a~~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVK-----------------DLREIIEEARKNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHH-----------------HHHHHHHHHHHHHh
Confidence 45777889999999999999999883 33344 22333222222 222222222 2223
Q ss_pred cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE--ecCchHHH---hhhcCCCeEEcCCCChHHHHHHHHHHhcc
Q 036323 285 AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI--TTRKETVA---RMMESTDIVYVQGLSELECWSLFRRFALS 359 (583)
Q Consensus 285 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TtR~~~v~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 359 (583)
.+++.+|++|.|+.-+..+.+.| ||.-.+|..|+| ||-++... .......++.+++|+.++-..++.+.+..
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 58999999999988776666665 445556777776 66665432 11234789999999999999999984321
Q ss_pred CCCC-C-CCc-hHHHHHHHHhhhCCCCcc
Q 036323 360 GRTP-S-ECD-QLEGIGRGIVRKCKGLPL 385 (583)
Q Consensus 360 ~~~~-~-~~~-~~~~~~~~I~~~c~GlPL 385 (583)
.... . ... -.+++.+.|++.++|--.
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 1111 1 111 124466778888888544
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.83 E-value=4.7e-08 Score=94.38 Aligned_cols=171 Identities=13% Similarity=0.093 Sum_probs=100.9
Q ss_pred chhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhh
Q 036323 185 RDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELE 264 (583)
Q Consensus 185 R~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (583)
.+..++.+.+++.. .....+.|+|++|+|||+||+.+++.. .......+++++..-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~-------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG-------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred cHHHHHHHHHHHhc-------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH-----
Confidence 44566777776532 235688899999999999999998742 22223345555432110 00
Q ss_pred cCccccccHHHHHHHHHHHhcCCceeEEEcCCCccccc-c-hHhhHHhhcc-CCCCceEEEecCchH---------HHhh
Q 036323 265 GSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYR-K-WEPFRNCLMN-GLRGSKILITTRKET---------VARM 332 (583)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~IlvTtR~~~---------v~~~ 332 (583)
.... ..+.+ .-+|||||++..... . ...+...+.. ...+..+|+||+... +...
T Consensus 82 ---------~~~~----~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------PEVL----EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------HHHH----hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0111 11222 348999999654332 2 2334444432 123457888887432 1222
Q ss_pred hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhh
Q 036323 333 MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSL 393 (583)
Q Consensus 333 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 393 (583)
+.....+++.+++.++...++...+-..... --.+....|++.+.|+|..+..+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 2224679999999999999988765322211 12455677888899998877766443
No 19
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=1.9e-07 Score=101.22 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=116.1
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.++||.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-...+. +..+........
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~ 81 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACRE 81 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHH
Confidence 3578999999999999985432 355667999999999999988876321111110 001111111111
Q ss_pred HHHHhh-----cCc---cccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH-
Q 036323 259 TIEELE-----GSA---IDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET- 328 (583)
Q Consensus 259 il~~l~-----~~~---~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~- 328 (583)
|...-. ... ....++.++++.+... ..++.-++|||+++..+...++.|+..|..-..+.++|+||.+..
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 111000 000 0011122222222111 124455899999987766678888887766666777777777643
Q ss_pred HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhhh
Q 036323 329 VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTIG 391 (583)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 391 (583)
+...+ .....+.+.+++.++..+.+.+.+..++...+ .+....|++.++|..- |+..+-
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 32222 23678999999999999999887644332222 5566789999988654 555433
No 20
>PRK04195 replication factor C large subunit; Provisional
Probab=98.78 E-value=6.1e-07 Score=96.41 Aligned_cols=248 Identities=13% Similarity=0.111 Sum_probs=138.2
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+..+++|.+|+.... .....+.+.|+|++|+||||+|+.++++.. |. .+-++.++..+. .....
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~---~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~ 83 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWL---KGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIER 83 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHh---cCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHH
Confidence 4568999999999999986532 112367899999999999999999998531 22 223344432222 22222
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc----cchHhhHHhhccCCCCceEEEecCchH-HHh-h
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY----RKWEPFRNCLMNGLRGSKILITTRKET-VAR-M 332 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~-~ 332 (583)
++....... .....++-+||||+++.-.. ..+..+...+.. .+..||+|+.+.. ... .
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence 222211110 00113677999999965322 234555555543 2344666664321 111 1
Q ss_pred h-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccCC---CHHHHHHHHh
Q 036323 333 M-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKR---TKEEWQSALD 408 (583)
Q Consensus 333 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~---~~~~w~~~l~ 408 (583)
+ .....+++.+++..+....+...+...+..-. .++...|++.++|..-.+......+.... +.+....+..
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~ 223 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR 223 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc
Confidence 1 23567899999999999888887644332222 45678899999997765554433333221 2333332221
Q ss_pred hhccccccccCCCcchhhcccc-CChHHhHHHHhhhccCCCCcccChHHHHHHHHHhccccc
Q 036323 409 SEMWQLEEFEGGLSAPLFLSYN-DLPFEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVL 469 (583)
Q Consensus 409 ~~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~ 469 (583)
.+...+++.++..-+. .-+......+..+. ++. ..+-.|+.|.+...
T Consensus 224 ------~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ------RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ------CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 1123344555554443 22233333332222 222 35778999998764
No 21
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.78 E-value=9.6e-09 Score=95.75 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=32.7
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCc
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDN 232 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 232 (583)
.|+||++++++|...|... .....+.+.|+|.+|+|||+|++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~----~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA----QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT----SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH----HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999522 34567899999999999999999988753
No 22
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.78 E-value=1.6e-08 Score=88.63 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=79.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCcccc---ccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVI---NNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN 283 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 283 (583)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...++..++.......+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35689999999999999999998742110 003456799988877899999999999998766655666677777777
Q ss_pred hcCCc-eeEEEcCCCcc-cccchHhhHHhhccCCCCceEEEecCc
Q 036323 284 IAGQK-FFMVLDNLWTD-DYRKWEPFRNCLMNGLRGSKILITTRK 326 (583)
Q Consensus 284 l~~k~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTtR~ 326 (583)
+...+ .+||||+++.- +...++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76555 49999999654 3333444433222 566777776654
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=2.3e-07 Score=95.87 Aligned_cols=193 Identities=15% Similarity=0.163 Sum_probs=111.7
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+.-++.+.+.+.... -.+.+.++|+.|+||||+|+.+.+...-...+. ..+.........
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~ 81 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKE 81 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHH
Confidence 3468999999999999886432 356778999999999999999877421111000 000000011111
Q ss_pred HHHHhhc-------C-ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-H
Q 036323 259 TIEELEG-------S-AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-T 328 (583)
Q Consensus 259 il~~l~~-------~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~ 328 (583)
+...... . .....+...+...+... ..+++-++|+|+++......++.+...+......+.+|++|.+. .
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 1111000 0 00111122222221111 12445699999997665556777777776655666677666543 3
Q ss_pred HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 329 VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
+...+ +....+++.+++.++..+.+...+...+..- .++.+..|++.++|.|..+.
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 33222 2257899999999999988887664332211 24566779999999886443
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.76 E-value=1.7e-07 Score=96.30 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=109.2
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCc-eEEEEEeCCCCChH-HHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVRVCVSDPFDEF-NVA 256 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~-~~~ 256 (583)
-..++|++..++.|..++..+ ..+.+.++|++|+||||+|+.+++... ...+. ..+.+++++..... ..+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~-------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP-------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhh
Confidence 357899999999999988533 234578999999999999999887421 11111 12334433211000 000
Q ss_pred H---HHHHHhhcC-ccccccHHHHHHHHHHH---h--cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch
Q 036323 257 K---ATIEELEGS-AIDLHELNSLLRRIGAN---I--AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE 327 (583)
Q Consensus 257 ~---~il~~l~~~-~~~~~~~~~~~~~l~~~---l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 327 (583)
. .....+... .......+.....+... . .+.+-+|||||+..-.......+...+......+++|+|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000000 00000111111111111 1 1345589999996544334445655555444556777776543
Q ss_pred -HHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhh
Q 036323 328 -TVARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKT 389 (583)
Q Consensus 328 -~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 389 (583)
.+...+. ....+++.+++.++...++...+...+..- -.+....|++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY----DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 2222222 246788999999999999988764333221 255677889999887665443
No 25
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=3.5e-07 Score=92.74 Aligned_cols=178 Identities=16% Similarity=0.141 Sum_probs=116.5
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC----ccccccCceEEEEEe-CCCCChHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND----NDVINNFEIRVRVCV-SDPFDEFN 254 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~f~~~~wv~~-~~~~~~~~ 254 (583)
.+++|.+.-++.|...+... .-.+...++|+.|+||||+|+.+++. .....|++...|... +.......
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 35789999999999998543 34567789999999999999888763 122345565555442 22222222
Q ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHH-hh-
Q 036323 255 VAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVA-RM- 332 (583)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~-~~- 332 (583)
.+++.+.+...+ ..+++-++|+|+++..+...++.|...+.....++.+|++|.+.... ..
T Consensus 78 -ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 -IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred -HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 222222222111 13456688888886666677888999998777888888888765422 21
Q ss_pred hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 333 MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 333 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
......+++.+++.++....+.+... . .. .+.+..++..++|.|.-+.
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~-~---~~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN-D---IK----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc-C---CC----HHHHHHHHHHcCCCHHHHH
Confidence 22257899999999999888866531 1 11 3336678899999887554
No 26
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=2.8e-07 Score=101.84 Aligned_cols=195 Identities=13% Similarity=0.162 Sum_probs=115.9
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-...... ..+........
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~ 81 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVE 81 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHH
Confidence 3578999999999999886432 3456689999999999999999874221111000 00000000011
Q ss_pred HHHH-------hhcC-ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hH
Q 036323 259 TIEE-------LEGS-AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ET 328 (583)
Q Consensus 259 il~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~ 328 (583)
+... +... .....++..+...+... ..+++-++|||+++......++.|+..+.....+.++|++|.+ ..
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~k 161 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQK 161 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchh
Confidence 1100 0000 01111222232222211 2466779999999877767788888877665556666655544 44
Q ss_pred HHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 329 VARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 329 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
+... ......|++.+|+.++...++.+.+-..... ...+.+..|++.++|.|--+..+
T Consensus 162 Ll~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~----~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 162 LPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP----FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred chHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4322 2235789999999999999998876432211 12456778999999988644443
No 27
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=5e-08 Score=104.16 Aligned_cols=197 Identities=16% Similarity=0.127 Sum_probs=113.8
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++...-.+.+...+|.|.+... .......-
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCc
Confidence 468999999999988886432 34567999999999999999887743221222222332221100 00000000
Q ss_pred HHHhhcC-ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecC-chHHHhhhc-C
Q 036323 260 IEELEGS-AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTR-KETVARMME-S 335 (583)
Q Consensus 260 l~~l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR-~~~v~~~~~-~ 335 (583)
+..+... .....++.++...+... ..+++-++|||+++......++.|...+......+.+|++|. ...+...+. .
T Consensus 87 v~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 87 VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000000 00111122222222211 234566999999976665667778777766545555555554 333333222 2
Q ss_pred CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 336 TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 336 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
...+++.+++.++....+.+.+...+... ..+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 56899999999999999998775433222 2456788999999988644
No 28
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=2.6e-07 Score=98.99 Aligned_cols=197 Identities=14% Similarity=0.144 Sum_probs=114.7
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccc---cCceEEEEEeCCCCChHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVIN---NFEIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~ 255 (583)
-.++||.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-.. ... . .+..+.....
T Consensus 15 FddVIGQe~vv~~L~~al~~gR------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~----~~~PCG~C~s 83 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I----TAQPCGQCRA 83 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C----CCCCCcccHH
Confidence 3468999999999999996543 356778999999999999988876321100 000 0 0000111111
Q ss_pred HHHHHHH-------hhcC-ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE-ecC
Q 036323 256 AKATIEE-------LEGS-AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI-TTR 325 (583)
Q Consensus 256 ~~~il~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TtR 325 (583)
...|... +... .....++.++.+.+... ..++.-++|||+++..+...++.|+..|..-..++++|+ ||.
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 1111110 0000 00111222222222211 135566999999987776778888877765445555554 554
Q ss_pred chHHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 326 KETVARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 326 ~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
...+...+. ....+.+..++.++..+.+.+.+...+...+ .+..+.|++.++|.|.-...+
T Consensus 164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 454443322 2678999999999999998877643322111 345677999999998754443
No 29
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=4.4e-07 Score=97.46 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=114.9
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-.. ++. ...+......+.
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~-~~pCg~C~sC~~ 80 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR------LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVT-STPCEVCATCKA 80 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCC-CCCCccCHHHHH
Confidence 3578999999999999996442 356888999999999999998876321110 110 001111111111
Q ss_pred HHHHhhc-------C-ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-H
Q 036323 259 TIEELEG-------S-AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-T 328 (583)
Q Consensus 259 il~~l~~-------~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~ 328 (583)
+...-.. . .....++.++...+... ..++.-++|||+++.-+....+.|...+.....+..+|++|.+. .
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 1110000 0 00111122222221111 23566699999997766667777777776655566777766553 3
Q ss_pred HHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhh
Q 036323 329 VARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKT 389 (583)
Q Consensus 329 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 389 (583)
+... ......+++.+++.++....+.+.+...+.... .+....|++.++|.+..+..
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 3222 233678999999999999999887644332222 45567799999997754443
No 30
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=4.6e-07 Score=97.01 Aligned_cols=184 Identities=17% Similarity=0.157 Sum_probs=113.2
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc-------------------ccCc
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI-------------------NNFE 239 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~ 239 (583)
-.+++|.+..++.|...+.... -.+.+.++|+.|+||||+|+.+++...-. ..|.
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~ 88 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFI 88 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCC
Confidence 3468999999999999885432 34567899999999999999887631110 0111
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCc
Q 036323 240 IRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGS 318 (583)
Q Consensus 240 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 318 (583)
..++++...... ..+...+...+... ..+++-++|+|+++..+...++.|+..+......+
T Consensus 89 dlieidaas~~g------------------vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 89 DLIEIDAASRTG------------------VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred ceEEeecccccC------------------HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 122222211111 11222233322221 23566799999997766667788888887655566
Q ss_pred eEE-EecCchHHHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhh
Q 036323 319 KIL-ITTRKETVARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTI 390 (583)
Q Consensus 319 ~Il-vTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 390 (583)
.+| +||....+... ......+++.+++.++....+.+.+...+... ..+....|++.++|.+- |+..+
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 555 45544444322 23367899999999998888887653322211 24556779999999664 44444
No 31
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.66 E-value=2.8e-07 Score=85.95 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=98.8
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+|||.+.-++.+.-++.... ........+.++|++|+||||||.-+.+. ....|. +.+.. ...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~--~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~-~i~------- 87 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAK--KRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGP-AIE------- 87 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHH--CTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECC-C---------
T ss_pred HHHccCcHHHHhhhHHHHHHHH--hcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccch-hhh-------
Confidence 4689999998888766554211 01245778899999999999999999984 333332 22211 100
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccC--------CC-----------Cce
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG--------LR-----------GSK 319 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~-----------gs~ 319 (583)
.. .++...+.. + +++-+|++|.++.-+..+-+.|...+.++ ++ -+-
T Consensus 88 ----------k~---~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 ----------KA---GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ----------SC---HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ----------hH---HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 01 112222221 2 24558888999876655555555544321 11 122
Q ss_pred EEEecCchHHHhhhcC-CC-eEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhh
Q 036323 320 ILITTRKETVARMMES-TD-IVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL 394 (583)
Q Consensus 320 IlvTtR~~~v~~~~~~-~~-~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 394 (583)
|=.|||...+...+.. .. ..+++..+.+|-..+..+.+..-. .+-.++.+.+|+++|.|-|--..-+-+..
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3457887655544443 33 347999999999999988663322 22336778999999999997655444433
No 32
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=4.4e-08 Score=98.14 Aligned_cols=270 Identities=22% Similarity=0.170 Sum_probs=171.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCc-eEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI 284 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (583)
...+.+.++|.|||||||++-.+.. +...|. .+.++....-.+...+.-.+...++...... +.....+....
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~ 85 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRI 85 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHH
Confidence 3467899999999999999988877 556674 4555555554455555555555555443221 22333455566
Q ss_pred cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHHhhhcCCCeEEcCCCChH-HHHHHHHHHhccCCCC
Q 036323 285 AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVARMMESTDIVYVQGLSEL-ECWSLFRRFALSGRTP 363 (583)
Q Consensus 285 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~~ 363 (583)
.+++.++|+||...- ...-..+...+..+.+.-.|+.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 788999999998321 112223444455555666789999976433 23455667777765 7888887765332221
Q ss_pred -CCCchHHHHHHHHhhhCCCCccchhhhhhhhccCCCHHHHHHHHhhhcccccc-------ccCCCcchhhccccCChHH
Q 036323 364 -SECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSALDSEMWQLEE-------FEGGLSAPLFLSYNDLPFE 435 (583)
Q Consensus 364 -~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~-------~~~~i~~~l~~sy~~L~~~ 435 (583)
.-...-.....+|.++..|.|++|...++..+.- .+.+....++.....+.+ ........+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1111224567889999999999999999988765 444444444332222211 2345788999999999999
Q ss_pred hHHHHhhhccCCCCcccChHHHHHHHHHhccccccCCchHHHHHHHHHHHHhhcccccc
Q 036323 436 IKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLKGNNEMKVIGLEYFDCLASRSFYQQ 494 (583)
Q Consensus 436 ~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~rsll~~ 494 (583)
.+-.|..++.|...|... ...|.+-|-... .+....-..+..|++.+++..
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhh
Confidence 999999999999887644 334444332210 122233444667777777753
No 33
>PTZ00202 tuzin; Provisional
Probab=98.65 E-value=1.1e-06 Score=89.24 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=105.8
Q ss_pred ccccccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 173 STSLIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 173 ~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
...+.+.+.|+||+.++.+|...|...+ ...++++.|+|++|+|||||++.+..... + ..+.++.. +.
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d----~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~ 322 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLD----TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GT 322 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccC----CCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CH
Confidence 3455677899999999999999996443 23456999999999999999999987422 1 12233332 67
Q ss_pred HHHHHHHHHHhhcCcccc--ccHHHHHHHHHHHh-c-CCceeEEEcCCCcccc-cchHhhHHhhccCCCCceEEEecCch
Q 036323 253 FNVAKATIEELEGSAIDL--HELNSLLRRIGANI-A-GQKFFMVLDNLWTDDY-RKWEPFRNCLMNGLRGSKILITTRKE 327 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~IlvTtR~~ 327 (583)
.+++..++.+|+..+... .-...+.+.+.+.- . +++.+||+-=-...+. ..+++. ..|.....-|.|++----+
T Consensus 323 eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evple 401 (550)
T PTZ00202 323 EDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHh
Confidence 899999999999743221 11233333333322 2 5666776643211111 112221 1234445567787755444
Q ss_pred HHHhh---hcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 328 TVARM---MESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 328 ~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
.+... +.....|.+++++.++|..+-.+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 33221 1225678899999999988776643
No 34
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=9e-07 Score=94.22 Aligned_cols=194 Identities=13% Similarity=0.151 Sum_probs=114.1
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCce-EEEEEeCCCCChHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEI-RVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~ 258 (583)
.+++|.+..+..|...+... .-.+.+.++|+.|+||||+|+.+++...-...... .-+. .+........
T Consensus 21 ~dliGq~~vv~~L~~ai~~~------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHH
Confidence 46799999999998877543 23567889999999999999999774211111000 0000 0000011111
Q ss_pred HHHHh-------hc-CccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE-ecCchH
Q 036323 259 TIEEL-------EG-SAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI-TTRKET 328 (583)
Q Consensus 259 il~~l-------~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TtR~~~ 328 (583)
+.... .. ......++.++.+..... +.+++-++|+|+++.-....++.|...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 11100 00 001112222222222111 235667999999987666678888888776555666554 555555
Q ss_pred HHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 329 VARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 329 v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
+...+. ....+++.+++.++....+.+.+...+...+ .+....|++.++|.+.-+
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 544333 3567999999999999999988754332222 455677999999977544
No 35
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.63 E-value=9.5e-07 Score=90.04 Aligned_cols=182 Identities=15% Similarity=0.087 Sum_probs=106.4
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEe--CCCCChHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCV--SDPFDEFNVA 256 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~ 256 (583)
-.+++|++..++.+..++.... .+.+.|+|.+|+||||+|+.+++... ...+.. .++.+ +...... ..
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~-------~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~ 85 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKN-------MPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VI 85 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HH
Confidence 3568999999999999985432 34579999999999999999987421 111211 12222 2211111 11
Q ss_pred HHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-HHHhhh-c
Q 036323 257 KATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-TVARMM-E 334 (583)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~-~ 334 (583)
...+..+....+ .....+-++++|+++.-.......+...+......+.+|+++... .....+ .
T Consensus 86 ~~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 86 RNKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 111111110000 001235689999986544334555666665545556777766432 221111 2
Q ss_pred CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 335 STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 335 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
....+++.+++.++....+...+...+..- ..+....|++.++|.+.-+.
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 245789999999999888888764333211 24567788999999877543
No 36
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=2.5e-07 Score=82.17 Aligned_cols=125 Identities=15% Similarity=0.083 Sum_probs=71.8
Q ss_pred eechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHH
Q 036323 183 RGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEE 262 (583)
Q Consensus 183 vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (583)
+|++..+..+...+... ..+.+.|+|.+|+|||+|++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~-------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP-------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh
Confidence 47888999999888542 356788999999999999999998532 212345566554433222111111000
Q ss_pred hhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccC------CCCceEEEecCchH
Q 036323 263 LEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG------LRGSKILITTRKET 328 (583)
Q Consensus 263 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~IlvTtR~~~ 328 (583)
............++.+||+||++.........+...+... ..+..+|+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999753222223333333322 35778888887543
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=98.61 E-value=5.9e-07 Score=91.35 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=106.0
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCc-eEEEEEeCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~ 257 (583)
-.+++|.++.++.|..++... ..+.+.++|++|+||||+|..+++... ...|. .++-++.++..... ..+
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~-------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr 82 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDG-------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVR 82 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHH
Confidence 346889998888888877533 234477999999999999999887421 11221 11112222221111 122
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-HHHhhh-cC
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-TVARMM-ES 335 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~-~~ 335 (583)
.++..+...... ...++.-+++||+++.-.......+...+......+++++++... .+...+ ..
T Consensus 83 ~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 222211110000 002346699999997655445555666554444556777766542 222211 12
Q ss_pred CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 336 TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 336 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
...+++.+++.++....+...+-..+..-. .+....|++.++|..-.+
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 467899999999999998887744332222 455678899999866433
No 38
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.61 E-value=9.1e-07 Score=86.62 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=100.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
+....+.+||++|+||||||+.+.+..+... ..||..|.......-.+.++++-.. ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 4577788999999999999999998533322 4566666554433444444443211 11246
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE--ecCchHHH---hhhcCCCeEEcCCCChHHHHHHHHHHhc--
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI--TTRKETVA---RMMESTDIVYVQGLSELECWSLFRRFAL-- 358 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TtR~~~v~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~-- 358 (583)
++|.+|++|.|+.-+..+.+.+ ||.-..|..++| ||.++... ..+....++.|++|+.++...++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 7899999999977665555544 556667876666 67766442 2234478899999999999888877321
Q ss_pred cCC-C---CCCC---chHHHHHHHHhhhCCCCcc
Q 036323 359 SGR-T---PSEC---DQLEGIGRGIVRKCKGLPL 385 (583)
Q Consensus 359 ~~~-~---~~~~---~~~~~~~~~I~~~c~GlPL 385 (583)
+.. . +-.+ .-...+.+-++..|.|-..
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 111 1 1111 1224566777888888543
No 39
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.1e-06 Score=88.00 Aligned_cols=177 Identities=15% Similarity=0.177 Sum_probs=116.4
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
|..+.+|+.+++++...|...- .+..+.-+.|+|.+|+|||+.++.+.+..+....=...+.|++....+...++..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~---~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 16 PEELPHREEEINQLASFLAPAL---RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccccHHHHHHHHHHHHHHh---cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 4459999999999999886543 2233334889999999999999999984322211112788999999999999999
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhc--CCceeEEEcCCCcccccchHhhHHhhccCCC-Cce--EEEecCchHHHhhh
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIA--GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLR-GSK--ILITTRKETVARMM 333 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~--IlvTtR~~~v~~~~ 333 (583)
|+..++..+.......+....+.+.+. ++.+++|||++..-....-+.+...+..... .++ +|..+.+......+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999998555444555566666666664 5789999999954222211333333333222 343 33344444333222
Q ss_pred cC-------CCeEEcCCCChHHHHHHHHHHhc
Q 036323 334 ES-------TDIVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 334 ~~-------~~~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
.+ ...+..+|-+.+|-...+...+-
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 11 23377888999999999988764
No 40
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.2e-06 Score=92.94 Aligned_cols=202 Identities=17% Similarity=0.173 Sum_probs=115.7
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccccc--C-----------------c
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINN--F-----------------E 239 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f-----------------~ 239 (583)
-.+++|.+...+.|...+.... -.+.+.++|++|+||||+|+.+++...-... + .
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 3568999988888888775432 3456889999999999999998764211100 0 0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHH-HhcCCceeEEEcCCCcccccchHhhHHhhccCCCCc
Q 036323 240 IRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGS 318 (583)
Q Consensus 240 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 318 (583)
....++.+..... .++..+...+.. -..+++-++|+|+++.-.....+.|...+......+
T Consensus 87 dv~el~aa~~~gi------------------d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 87 DVIELDAASNRGI------------------DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred ccEEEeCcccCCH------------------HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 1111111111111 111111111111 123456799999996554445666766665544445
Q ss_pred eEEEecCc-hHHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCC-Cccchhhhhhhhc
Q 036323 319 KILITTRK-ETVARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKG-LPLAAKTIGSLLQ 395 (583)
Q Consensus 319 ~IlvTtR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~~~L~ 395 (583)
.+|++|.+ ..+...+. ....+++.+++.++....+.+.+...+..- ..+....|++.++| ++.++..+-.+..
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44444433 33433322 356899999999999998888764332222 24566778887765 5667776655432
Q ss_pred c---CCCHHHHHHHHh
Q 036323 396 F---KRTKEEWQSALD 408 (583)
Q Consensus 396 ~---~~~~~~w~~~l~ 408 (583)
. .-+.+....++.
T Consensus 225 ~~~~~It~e~V~~~l~ 240 (472)
T PRK14962 225 FSEGKITLETVHEALG 240 (472)
T ss_pred hcCCCCCHHHHHHHHc
Confidence 2 125556655543
No 41
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.58 E-value=9.5e-07 Score=85.32 Aligned_cols=153 Identities=11% Similarity=0.064 Sum_probs=89.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAG 286 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (583)
..+.+.|+|.+|+|||+||+.+++... .... ...+++..... . .+ .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~----~~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------L----AF------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------H----HH------------------hh-cc
Confidence 346788999999999999999987421 1122 23444433210 0 00 01 12
Q ss_pred CceeEEEcCCCcccccchHhhHHhhcc-CCCCc-eEEEecCchHHHh--------hhcCCCeEEcCCCChHHHHHHHHHH
Q 036323 287 QKFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGS-KILITTRKETVAR--------MMESTDIVYVQGLSELECWSLFRRF 356 (583)
Q Consensus 287 k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~IlvTtR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~ 356 (583)
..-+||+||+...+...-..+...+.. ...+. .+|+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 345799999965433333334444432 12333 4667766432211 2223468899999998877777665
Q ss_pred hccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhh
Q 036323 357 ALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL 394 (583)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 394 (583)
+-..... --+++.+.|++.+.|++..+..+...+
T Consensus 170 ~~~~~v~----l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQ----LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4222211 125667788899999999887776555
No 42
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=4.4e-07 Score=94.75 Aligned_cols=193 Identities=10% Similarity=0.064 Sum_probs=114.2
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++...-...... ..+....+ ...
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~ 83 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLE 83 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHH
Confidence 3568999999999999886432 2356889999999999999999874211110000 00000001 111
Q ss_pred HHHHhhcC--------ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEe-cCchH
Q 036323 259 TIEELEGS--------AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILIT-TRKET 328 (583)
Q Consensus 259 il~~l~~~--------~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvT-tR~~~ 328 (583)
+....... .....++.++.+.+... ..++.-++|||+++.-+...++.|+..+........+|++ |....
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 11111000 01122223333333221 2355669999999877767788887777554445555544 44444
Q ss_pred HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 329 VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
+...+ .....|.+.+++.++..+.+.+.+...+... ..+....|++.++|.+.-+.
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHHHH
Confidence 43332 2256799999999999988888764333222 25567889999999886433
No 43
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.58 E-value=2.3e-06 Score=88.59 Aligned_cols=184 Identities=10% Similarity=0.146 Sum_probs=111.0
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc--------------------ccC
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI--------------------NNF 238 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f 238 (583)
-..++|.+..++.|.+++.... -.+.+.++|++|+|||++|+.+.+...-. .++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 86 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL 86 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 4568999999999999885432 34678899999999999998886531100 122
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCC
Q 036323 239 EIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRG 317 (583)
Q Consensus 239 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 317 (583)
+. ++++...... ..+...+...+... ..+++-++|+|++..-.....+.+...+......
T Consensus 87 ~~-~~~~~~~~~~------------------~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 87 DV-IEIDAASNNG------------------VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred CE-EEeeccccCC------------------HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 21 2222111111 11112222222111 1245568999998554444566677777555556
Q ss_pred ceEEEecCchH-HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 318 SKILITTRKET-VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 318 s~IlvTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
+.+|++|.+.. +...+ .....+++.+++.++...++...+-..+..- -.+.+..|++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 66666665443 33222 2256788999999999988888764332211 14567789999999887655443
No 44
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=1.1e-06 Score=95.52 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=116.0
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.++||.+.-++.|.+.+.... -...+.++|..|+||||+|+.+++...-...+ ....+........
T Consensus 15 f~divGQe~vv~~L~~~l~~~r------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~ 81 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCRE 81 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHH
Confidence 3578999999999999886432 34567899999999999999987642111000 0011111122222
Q ss_pred HHHH-------hhcC-ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hH
Q 036323 259 TIEE-------LEGS-AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ET 328 (583)
Q Consensus 259 il~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~ 328 (583)
|... +... .....++.++...+... ..++.-++|||+++..+....+.|+..+......+++|++|.+ ..
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 2110 0000 01112222333322211 2456679999999877767788888877665556655555444 44
Q ss_pred HHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 329 VARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 329 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
+... ......|++.+|+.++....+.+.+-..+... ..+....|++.++|.+--+..+
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~----e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF----EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 4322 22367899999999999999887663322212 2455677999999988744433
No 45
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.6e-06 Score=91.55 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=113.1
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc-------------------ccCc
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI-------------------NNFE 239 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~ 239 (583)
-.+++|.+..++.|.+.+.... -.+.+.++|+.|+||||+|+.+++...-. ..+.
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 3578999999999988885432 34578899999999999998886521000 0111
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCc
Q 036323 240 IRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGS 318 (583)
Q Consensus 240 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 318 (583)
-++.++.+...... ++.++.+..... ..++.-++|+|+++.-+...++.|...+....+.+
T Consensus 86 Dv~eidaas~~~vd------------------dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 86 DVIEIDAASNTSVD------------------DIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred CEEEEecccCCCHH------------------HHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 12223322221111 122222221111 12455689999997665556777888887655666
Q ss_pred eEEEecC-chHHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 319 KILITTR-KETVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 319 ~IlvTtR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
.+|++|. ...+...+ .....+++.+++.++....+.+.+...+..-+ .+....|++.++|.+..+.
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 6665554 44444333 23678999999999999999887754432222 4556779999999876443
No 46
>PF13173 AAA_14: AAA domain
Probab=98.56 E-value=2.8e-07 Score=80.37 Aligned_cols=119 Identities=24% Similarity=0.221 Sum_probs=76.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
.+++.|.|+.|+|||||+++++++.. ....+++++..+....... +.+ +.+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccC
Confidence 36899999999999999999987532 2344566665543210000 000 223333333447
Q ss_pred ceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHHhh-----h-cCCCeEEcCCCChHH
Q 036323 288 KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVARM-----M-ESTDIVYVQGLSELE 348 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~-----~-~~~~~~~l~~L~~~e 348 (583)
+.+|+||++... ..|......+.+..+..+|++|+.+...... + +....++|.||+-.|
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 889999999543 4787766666665567889999987655532 1 124567899998776
No 47
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.55 E-value=5.8e-07 Score=99.72 Aligned_cols=172 Identities=18% Similarity=0.268 Sum_probs=96.7
Q ss_pred CceeechhHHH---HHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHH
Q 036323 180 SEVRGRDEEMR---SIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVA 256 (583)
Q Consensus 180 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (583)
.+|+|.+..+. .|.+.+.. .....+.|+|++|+||||||+.+++. ...+|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~-------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i---- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA-------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV---- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc-------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh----
Confidence 46899988774 45555543 23556789999999999999999974 333331 111110 000
Q ss_pred HHHHHHhhcCccccccHHHHHHHHHHHh--cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE--ecCchH--HH
Q 036323 257 KATIEELEGSAIDLHELNSLLRRIGANI--AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI--TTRKET--VA 330 (583)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TtR~~~--v~ 330 (583)
.+.........+.+ .+++.+|||||++.-+...++.|...+. .|+.+++ ||.+.. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111112221111 2467799999997655445555554433 3555555 344432 22
Q ss_pred hhh-cCCCeEEcCCCChHHHHHHHHHHhccCC---CCCCCchHHHHHHHHhhhCCCCcc
Q 036323 331 RMM-ESTDIVYVQGLSELECWSLFRRFALSGR---TPSECDQLEGIGRGIVRKCKGLPL 385 (583)
Q Consensus 331 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~~~~I~~~c~GlPL 385 (583)
..+ .....+.+.+|+.++...++.+.+-... ......-.++....|++.+.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 211 2256799999999999999987653100 000111124556777888877544
No 48
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.55 E-value=1.3e-06 Score=96.15 Aligned_cols=203 Identities=18% Similarity=0.162 Sum_probs=120.6
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccC---ceEEEEEeCCC---CChH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNF---EIRVRVCVSDP---FDEF 253 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~ 253 (583)
+.++|++..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~-------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP-------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC-------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH
Confidence 46899999999988887432 24578999999999999999998754322222 12334444321 1122
Q ss_pred HHHHHH---------------HHHhhcCc----------------ccccc-HHHHHHHHHHHhcCCceeEEEcCCCcccc
Q 036323 254 NVAKAT---------------IEELEGSA----------------IDLHE-LNSLLRRIGANIAGQKFFMVLDNLWTDDY 301 (583)
Q Consensus 254 ~~~~~i---------------l~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~ 301 (583)
.+...+ +...+... ++... ....+..|.+.++++++.++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 211111 11111000 00011 12356777888888888888887877766
Q ss_pred cchHhhHHhhccCCCCceEEE--ecCchHH-Hhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHh
Q 036323 302 RKWEPFRNCLMNGLRGSKILI--TTRKETV-ARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIV 377 (583)
Q Consensus 302 ~~~~~l~~~l~~~~~gs~Ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~ 377 (583)
..|..+...+....+...+++ ||++... ...+ .....+.+.+++.++.+.++.+.+..... . -..++.+.|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~---ls~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-H---LAAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHH
Confidence 778887766666555555555 5664431 1111 12456789999999999999987643211 1 1144556666
Q ss_pred hhCCCCccchhhhhhh
Q 036323 378 RKCKGLPLAAKTIGSL 393 (583)
Q Consensus 378 ~~c~GlPLai~~~~~~ 393 (583)
+.+..-+-++..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6665556777766443
No 49
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1.2e-06 Score=94.89 Aligned_cols=195 Identities=13% Similarity=0.153 Sum_probs=111.6
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-..... + ..+........
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~ 81 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQ 81 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHH
Confidence 3578999999999999986432 356789999999999999998876321111000 0 00000001111
Q ss_pred HHHH-----hhcC---ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hH
Q 036323 259 TIEE-----LEGS---AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ET 328 (583)
Q Consensus 259 il~~-----l~~~---~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~ 328 (583)
+... +... .....++.+++...... ..+++-++|||++...+....+.|+..+......+++|++|.+ ..
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 1000 0000 00111122222221111 1356679999999765554566677777654455666666644 33
Q ss_pred HHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 329 VARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 329 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
+... .+....+.+.+++.++....+.+.+-..+...+ .+....|++.++|.+.-+..+
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHH
Confidence 2222 222456888999999999999887654332222 456778999999988654443
No 50
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.6e-06 Score=88.45 Aligned_cols=198 Identities=14% Similarity=0.108 Sum_probs=116.7
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccc--cCceEEEEEeCCCCChHHH
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVIN--NFEIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~ 255 (583)
.-..++|-+...+.|...+.... ....+.|+|+.|+||||+|..+.+..--.. .+... ...........
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~ 91 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPV 91 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHH
Confidence 44578999999999999986443 456788999999999999988876321100 01100 00111111122
Q ss_pred HHHHHHH-------hhcC--c-----cccccHHHHHHHHHHHh-----cCCceeEEEcCCCcccccchHhhHHhhccCCC
Q 036323 256 AKATIEE-------LEGS--A-----IDLHELNSLLRRIGANI-----AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLR 316 (583)
Q Consensus 256 ~~~il~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 316 (583)
.+.+... +..+ . ...-.++++ ..+.+++ .++.-++|+|+++..+....+.|...+.....
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 2332221 1000 0 011112332 2333333 35667999999987777777778877765444
Q ss_pred CceEE-EecCchHHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 317 GSKIL-ITTRKETVARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 317 gs~Il-vTtR~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
++.+| +|++...+..... ....+++.+++.++...++.+..... . ...+....|++.++|.|.....+.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45544 4444433332222 25789999999999999998843211 1 113446779999999998665443
No 51
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.53 E-value=2.9e-06 Score=82.91 Aligned_cols=197 Identities=18% Similarity=0.118 Sum_probs=120.7
Q ss_pred hHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc----ccCceEEEEEeCCCCChHHHHHHHHHH
Q 036323 187 EEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVRVCVSDPFDEFNVAKATIEE 262 (583)
Q Consensus 187 ~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (583)
+-+++|.++|..+. ....+.+.|+|.+|+|||++++++.+..-.. ..--.++.+.....++...++..|+.+
T Consensus 44 ~~L~~L~~Ll~~P~----~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 44 EALDRLEELLEYPK----RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHhCCc----ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 45677777776553 4567789999999999999999998631111 111246777888889999999999999
Q ss_pred hhcCccccccHHHHHHHHHHHhcC-CceeEEEcCCCccc---ccchHhhHHhh---ccCCCCceEEEecCchHHHhhh--
Q 036323 263 LEGSAIDLHELNSLLRRIGANIAG-QKFFMVLDNLWTDD---YRKWEPFRNCL---MNGLRGSKILITTRKETVARMM-- 333 (583)
Q Consensus 263 l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~---~~~~~~l~~~l---~~~~~gs~IlvTtR~~~v~~~~-- 333 (583)
++.+.........+.......++. +--+||+|.+++.- ......+...| .+.-.=+-|.+-|+...-+-..
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 998865555555555555555543 34599999996521 11222333333 3333345566666653222111
Q ss_pred ---cCCCeEEcCCCChHH-HHHHHHHHh--ccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 334 ---ESTDIVYVQGLSELE-CWSLFRRFA--LSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 334 ---~~~~~~~l~~L~~~e-a~~Lf~~~a--~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
.-..++.++....++ ...|+.... ..-.. ...-...++++.|...++|+.=-+.
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHH
Confidence 125667777776554 445554432 11111 1222346788999999999765443
No 52
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.8e-06 Score=93.75 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=113.6
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccccc--CceEEEEEeCCCCChHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINN--FEIRVRVCVSDPFDEFNVA 256 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~ 256 (583)
-.++||-+.-++.|.+++.... -...+.++|..|+||||+|+.+.+...-... ....- ...+......
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C 84 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQAC 84 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHH
Confidence 3568999999999999886543 3567789999999999999888653111000 00000 0011111222
Q ss_pred HHHHHHhhc-----CccccccHHHHHHHHHHH----hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEec-Cc
Q 036323 257 KATIEELEG-----SAIDLHELNSLLRRIGAN----IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITT-RK 326 (583)
Q Consensus 257 ~~il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~ 326 (583)
..|...-.. .......++++.+.+... ..++.-++|||+++..+...++.++..+......+.+|++| ..
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 222110000 000011122222222111 12345589999998777667788877776655565665554 43
Q ss_pred hHHHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 327 ETVARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 327 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
..+... ......+++.+++.++....+.+.+...+...+ .+....|++.++|.+.-+..+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 444322 233678999999999999999887644332222 455677899999977654443
No 53
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=2.7e-06 Score=82.24 Aligned_cols=149 Identities=15% Similarity=0.054 Sum_probs=88.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.|+|.+|+|||+|++.+++.. ......+.++++.+ ....+. ..... + .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~--------------~~~~~----l-~~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR--------------DALEA----L-EG 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH--------------HHHHH----H-hc
Confidence 3459999999999999999998742 22223445555322 111100 11111 1 23
Q ss_pred ceeEEEcCCCccc-ccchHh-hHHhhcc-CCCCceEEEecCch---------HHHhhhcCCCeEEcCCCChHHHHHHHHH
Q 036323 288 KFFMVLDNLWTDD-YRKWEP-FRNCLMN-GLRGSKILITTRKE---------TVARMMESTDIVYVQGLSELECWSLFRR 355 (583)
Q Consensus 288 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 355 (583)
.-+|||||+.... ...|.. +...+.. ...|..||+||+.. .+...+.....+++.+++.++-..++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3599999995422 122332 3333322 23456699998852 2222334456899999999999999998
Q ss_pred HhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 356 FALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
.+......- -++....|++.++|-.-.+
T Consensus 174 ~a~~~~l~l----~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLAL----DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 765432211 2556777888888765544
No 54
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.53 E-value=2.2e-06 Score=83.05 Aligned_cols=155 Identities=17% Similarity=0.094 Sum_probs=91.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
.+.+.|+|++|+|||+|++.+++.. ...-..+.++++..... ...+..+.+ . +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~-~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW--------------------FVPEVLEGM----E-Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh--------------------hhHHHHHHh----h-h
Confidence 3578899999999999999988742 22223345555432100 001111122 1 1
Q ss_pred ceeEEEcCCCccc-ccchHh-hHHhhcc-CCCC-ceEEEecCch---------HHHhhhcCCCeEEcCCCChHHHHHHHH
Q 036323 288 KFFMVLDNLWTDD-YRKWEP-FRNCLMN-GLRG-SKILITTRKE---------TVARMMESTDIVYVQGLSELECWSLFR 354 (583)
Q Consensus 288 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~g-s~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 354 (583)
--+|+|||+.... ...|+. +...+.. ...| .++|+||+.. .+...+....++++.++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2489999995432 124443 3333322 1233 4688888754 233345556899999999999999988
Q ss_pred HHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhh
Q 036323 355 RFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSL 393 (583)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 393 (583)
+.+...+. .--+++..-|++.+.|..-.+..+-..
T Consensus 178 ~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 178 LRARLRGF----ELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 76643221 122667788899988876655544433
No 55
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.50 E-value=3.1e-06 Score=79.12 Aligned_cols=91 Identities=11% Similarity=0.079 Sum_probs=63.9
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-HHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCC
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-TVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTP 363 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (583)
+.+-++|+||++.-....++.|...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 456689999997655556777877776655566677666543 222222 225689999999999988888761
Q ss_pred CCCchHHHHHHHHhhhCCCCccc
Q 036323 364 SECDQLEGIGRGIVRKCKGLPLA 386 (583)
Q Consensus 364 ~~~~~~~~~~~~I~~~c~GlPLa 386 (583)
-. .+.+..|++.++|.|..
T Consensus 169 i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC----HHHHHHHHHHcCCCccc
Confidence 11 45678899999999864
No 56
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=3.8e-06 Score=86.24 Aligned_cols=197 Identities=11% Similarity=0.019 Sum_probs=114.1
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccccc--Cc-eEEEEEeCCCCChHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINN--FE-IRVRVCVSDPFDEFNV 255 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~-~~~wv~~~~~~~~~~~ 255 (583)
-.+++|.+...+.|.+.+.... -...+.++|+.|+||+|+|..+.+..--... .. +..-............
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 3578999999999999886543 4557889999999999999777553110000 00 0000000000000111
Q ss_pred HHHHHHHhhcC---------c-----cccccHHHHHHHHHHHh-----cCCceeEEEcCCCcccccchHhhHHhhccCCC
Q 036323 256 AKATIEELEGS---------A-----IDLHELNSLLRRIGANI-----AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLR 316 (583)
Q Consensus 256 ~~~il~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 316 (583)
.+.+...-... . ...-.+++ ++.+.+.+ .+.+-++|||+++..+....+.|...+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111110000 0 00112233 22333333 25567999999988777778888888866555
Q ss_pred CceEEEecCchH-HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 317 GSKILITTRKET-VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 317 gs~IlvTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
++.+|++|.+.. +...+ .....+.+.+++.++..+++...... .. ......+++.++|.|+....+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LP----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 666777666543 33222 23678999999999999999876411 11 112256899999999866544
No 57
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.8e-06 Score=90.40 Aligned_cols=200 Identities=13% Similarity=0.130 Sum_probs=112.2
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEE-eCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVC-VSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~ 257 (583)
-.+++|.+.-++.|..++..+. -...+.++|++|+||||+|..+++...-...+....|.. ...+...-...+
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~ 88 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR 88 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH
Confidence 3578999999999998885432 345688999999999999988876321111110000110 011111111222
Q ss_pred HHHHHhhcC-----ccccccHHHHHHHHHHHh-----cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEec-Cc
Q 036323 258 ATIEELEGS-----AIDLHELNSLLRRIGANI-----AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITT-RK 326 (583)
Q Consensus 258 ~il~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~ 326 (583)
.+....... .......+++.+ +.+.+ .+++-++|+|+++.-....++.+...+....+.+.+|++| +.
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 221110000 001111222222 22222 3455689999997655556778888776655566665554 44
Q ss_pred hHHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhh
Q 036323 327 ETVARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKT 389 (583)
Q Consensus 327 ~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 389 (583)
..+...+. ....+++.+++.++....+...+-..+..- ..+.+..|++.++|.+--+..
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 44433222 245788999999999888887663322111 255678899999998754433
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=3.1e-06 Score=87.69 Aligned_cols=194 Identities=11% Similarity=0.095 Sum_probs=109.2
Q ss_pred CceeechhHHHHHHHHhhcCCCCC---CCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQ---QTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVA 256 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (583)
.+++|.+.-++.|.+++....... ...-.+.+.++|++|+|||++|..+.+...-...- ......-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--------~~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--------EPGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--------CCCCCCCHHH
Confidence 468899999999999997543000 01135678899999999999998886521100000 0000001111
Q ss_pred HHHHHHhhc---------CccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc
Q 036323 257 KATIEELEG---------SAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK 326 (583)
Q Consensus 257 ~~il~~l~~---------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~ 326 (583)
..+...-.. ......++..+.+.+... ..+++-++++|+++..+....+.|...+.....++.+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 111100000 000111122222222111 1245558899999776666666777777665556666666655
Q ss_pred h-HHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 327 E-TVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 327 ~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
. .+...+ .....+.+.+++.++....+.+... .. .+.+..+++.++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3 333332 2357899999999999888875321 11 344677899999999755433
No 59
>PRK05642 DNA replication initiation factor; Validated
Probab=98.49 E-value=2.6e-06 Score=82.43 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=92.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.|+|.+|+|||.|++.+++.. ...-..++|++..+ +... ...+.+. +.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~~~~~~----~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GPELLDN----LEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hHHHHHh----hhhC
Confidence 4678899999999999999998732 22223455665431 1110 0112222 2222
Q ss_pred ceeEEEcCCCccc-ccchHh-hHHhhcc-CCCCceEEEecCchH---------HHhhhcCCCeEEcCCCChHHHHHHHHH
Q 036323 288 KFFMVLDNLWTDD-YRKWEP-FRNCLMN-GLRGSKILITTRKET---------VARMMESTDIVYVQGLSELECWSLFRR 355 (583)
Q Consensus 288 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 355 (583)
=+||+||+.... ...|.. +...+.. ...|..+|+|++... +...+.....+++.+++.++-..+++.
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 278899995321 234443 4444432 234677888887532 112233357789999999999999986
Q ss_pred HhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhh
Q 036323 356 FALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL 394 (583)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 394 (583)
++...... --+++...|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~~~----l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLH----LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCC----CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66432211 125677888888888766655544433
No 60
>PRK09087 hypothetical protein; Validated
Probab=98.49 E-value=2.9e-06 Score=81.42 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=87.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
.+.+.|+|.+|+|||+|++.+++... ..+++.. .+...++. .+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~-----------------~~----~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN-----------------AA----AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH-----------------hh----hc-
Confidence 45689999999999999999887421 1133221 11111111 11 11
Q ss_pred ceeEEEcCCCcccccchHhhHHhhcc-CCCCceEEEecCc---------hHHHhhhcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 288 KFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILITTRK---------ETVARMMESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~IlvTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
-+|++||+..... .-+.+...+.. ...|..+|+|++. ++....+.....+++++++.++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788999954211 12234433322 2346778988873 2333445557899999999999999999887
Q ss_pred ccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 358 LSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
-..... --+++...|++.+.|..-++..+-
T Consensus 167 ~~~~~~----l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 167 ADRQLY----VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHcCCC----CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 432211 126677888898888777766443
No 61
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.3e-06 Score=91.67 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=111.1
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccc-------------------cCc
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVIN-------------------NFE 239 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~ 239 (583)
-.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.. .|.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 3468999999999999996443 345678999999999999988876321111 111
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCc
Q 036323 240 IRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGS 318 (583)
Q Consensus 240 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 318 (583)
-++.++......+ .+..++...+... ..++.-++|||+++.-+....+.+...+......+
T Consensus 89 d~~eidaas~~~v------------------~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 89 DLFEVDAASRTKV------------------EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred eEEEEcccccCCH------------------HHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 1222221111111 1122222221111 13455689999997766667777888776655567
Q ss_pred eEEEecCc-hHHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhh
Q 036323 319 KILITTRK-ETVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKT 389 (583)
Q Consensus 319 ~IlvTtR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 389 (583)
++|++|.+ ..+...+ .....+++.+++.++....+.+.+-..+.... .+....|++.++|.+.-+..
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 66665543 3333222 22567889999999988877766543322222 44567789999998864443
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=1.4e-06 Score=93.52 Aligned_cols=197 Identities=12% Similarity=0.126 Sum_probs=112.3
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-..++|++..++.|.+.+.... -.+.+.++|+.|+||||+|+.+.+...- .-|... ..+......+.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C------~~~~~~-~~Cg~C~sCr~ 81 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK------LTHAYIFSGPRGIGKTSIAKIFAKAINC------LNPKDG-DCCNSCSVCES 81 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhcC------CCCCCC-CCCcccHHHHH
Confidence 3578999999999999885432 3467889999999999999988763211 111110 11111122222
Q ss_pred HHHHhhcC--------ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEec-CchH
Q 036323 259 TIEELEGS--------AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITT-RKET 328 (583)
Q Consensus 259 il~~l~~~--------~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~~~ 328 (583)
+....... .....++..+...+... ..+++-++|+|+++......+..|...+......+.+|++| ....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 21111000 00111122222222211 12334479999997655556777777776554555555544 4334
Q ss_pred HHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhhhh
Q 036323 329 VARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTIGS 392 (583)
Q Consensus 329 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~ 392 (583)
+... ......+++.+++.++....+...+...+..-. .+.+..|++.++|.+. |+..+-.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4322 223568999999999999888886643322111 4456789999999665 4444433
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.7e-06 Score=91.77 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=109.5
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccc-------------------cCc
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVIN-------------------NFE 239 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~ 239 (583)
-.+++|.+.-++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-.. .|.
T Consensus 15 f~divGq~~v~~~L~~~i~~~~------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3468999999999999986433 345678999999999999998876321110 011
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHH-HhcCCceeEEEcCCCcccccchHhhHHhhccCCCCc
Q 036323 240 IRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGS 318 (583)
Q Consensus 240 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 318 (583)
-.++++.+.... ..++..+...+.. -..+++-++|+|+++..+....+.+...+......+
T Consensus 89 d~~ei~~~~~~~------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 89 DLIEVDAASNTQ------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred ceeEeeccccCC------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 111221111111 1111122221111 013556699999997665556777777776655566
Q ss_pred eEEEecCc-hHHHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhh
Q 036323 319 KILITTRK-ETVARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTI 390 (583)
Q Consensus 319 ~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 390 (583)
.+|++|.+ ..+... ......+++.+++.++....+.+.+...+... ..+....|++.++|.+- |+..+
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 56655543 333222 12246789999999999988887664332221 24456778999999775 33333
No 64
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=4.7e-06 Score=90.71 Aligned_cols=199 Identities=12% Similarity=0.109 Sum_probs=116.2
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCc--eEEEEEeCCCCChHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFE--IRVRVCVSDPFDEFNVA 256 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~ 256 (583)
-.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+...-..... ...+ ..+......
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C 92 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHC 92 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHH
Confidence 3578999999999999986432 355788999999999999999877421111000 0000 001111112
Q ss_pred HHHHHHhhcC--------ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEec-Cc
Q 036323 257 KATIEELEGS--------AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITT-RK 326 (583)
Q Consensus 257 ~~il~~l~~~--------~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~ 326 (583)
..|....... .....++.++...+... ..+++-++|+|+++..+....+.|...+..-..++.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 2222111110 01112222333322211 12445589999997665556777877776655566665544 44
Q ss_pred hHHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 327 ETVARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 327 ~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
..+...+. ....+++.+++.++....+.+.+...+.... .+....|++.++|.+.-+....
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 44433322 3578999999999999999887643332222 4567789999999887554433
No 65
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.6e-06 Score=93.52 Aligned_cols=196 Identities=13% Similarity=0.183 Sum_probs=113.7
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+++......... ....++.....+.
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~ 82 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRA 82 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHH
Confidence 3478999999999988885432 345678999999999999999876321100000 0011122223333
Q ss_pred HHHHhhcC--------ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hH
Q 036323 259 TIEELEGS--------AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ET 328 (583)
Q Consensus 259 il~~l~~~--------~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~ 328 (583)
+....... .....++.++...+... ..+++-++|||+++.-+....+.|...+......+.+|+++.+ ..
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 32221110 00111122222222211 1245669999999655545567777777655556666665543 33
Q ss_pred HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 329 VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
+...+ .....+++.+++.++....+.+.+...+.... .+.+..|++.++|.+..+...
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 33222 22567889999999998888877644332211 456778999999988755444
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=4.7e-06 Score=93.76 Aligned_cols=191 Identities=15% Similarity=0.146 Sum_probs=111.9
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
.++||.+..++.|..++.... -.+.+.++|..|+||||+|+.+.+...-..... ...+......+.|
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~ 81 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR------INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVAL 81 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHH
Confidence 468999999999999996433 345678999999999999998876421111100 0000111111111
Q ss_pred HHH---------hhc-CccccccHHHHHHHHHH-HhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEec-Cch
Q 036323 260 IEE---------LEG-SAIDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITT-RKE 327 (583)
Q Consensus 260 l~~---------l~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~~ 327 (583)
... +.. ......++.++.+.+.. -..++.-++|||+++......++.|+..|..-...+.+|++| ...
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 110 000 00011122222222111 123555689999998777677888888887655566666555 444
Q ss_pred HHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 328 TVARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 328 ~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
.+...+. ....|++.+++.++...++.+.+-..+.... .+....|++.++|.+..+
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4443333 3678999999999998888876533222111 445677899999988533
No 67
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=5.7e-07 Score=87.15 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=61.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC--CChHHHHHHHHH-----HhhcCccc-cccHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP--FDEFNVAKATIE-----ELEGSAID-LHELNSLLR 278 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~-----~l~~~~~~-~~~~~~~~~ 278 (583)
....++|+|++|+|||||++.++++.... +|+.++|+.+.+. .+..++++.+.. .++.+... ..-......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999975444 8999999997766 788888888833 33321111 011112222
Q ss_pred HHHHH-hcCCceeEEEcCCC
Q 036323 279 RIGAN-IAGQKFFMVLDNLW 297 (583)
Q Consensus 279 ~l~~~-l~~k~~LlVlDdv~ 297 (583)
..... -.+++.+|++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 24899999999994
No 68
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.40 E-value=6.8e-06 Score=78.54 Aligned_cols=162 Identities=12% Similarity=0.126 Sum_probs=94.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccC--ceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI 284 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (583)
....+.|+|..|+|||.|.+.+++. ..... ..+++++ ..++...+...+... ..+. +.+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~~~~----~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDG-----EIEE----FKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----SHHH----HHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHcc-----cchh----hhhhh
Confidence 4456789999999999999999984 33222 2344543 345555555555432 1222 22333
Q ss_pred cCCceeEEEcCCCccccc-chHh-hHHhhcc-CCCCceEEEecCch---------HHHhhhcCCCeEEcCCCChHHHHHH
Q 036323 285 AGQKFFMVLDNLWTDDYR-KWEP-FRNCLMN-GLRGSKILITTRKE---------TVARMMESTDIVYVQGLSELECWSL 352 (583)
Q Consensus 285 ~~k~~LlVlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 352 (583)
. .-=+|+|||++.-... .|.. +...+.. ...|.+||+|+... .+...+...-.+++.+++.++-..+
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 3 3458999999653222 2332 3333322 23467899998543 2334455677899999999999999
Q ss_pred HHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 353 FRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 353 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
+.+.+...+.. --++++.-|++.+.+..-.|..+
T Consensus 175 l~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 175 LQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 99987543332 22566777888777665554443
No 69
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.3e-06 Score=89.02 Aligned_cols=198 Identities=14% Similarity=0.163 Sum_probs=113.9
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+...-..... ...++.-...+.+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHH
Confidence 467899988888888885432 246788999999999999998877422111000 0011111122222
Q ss_pred HHHhhcC--------ccccccHHHHHHHHHH-HhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hHH
Q 036323 260 IEELEGS--------AIDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ETV 329 (583)
Q Consensus 260 l~~l~~~--------~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v 329 (583)
....... .....++..+...+.. -..+++-++|||+++..+...++.|...+........+|++|.+ ..+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 1110000 0001111222222211 12355679999999766555677777777554345555555544 444
Q ss_pred Hhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCc-cchhhhhhhh
Q 036323 330 ARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLP-LAAKTIGSLL 394 (583)
Q Consensus 330 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~~L 394 (583)
...+ .....+++.+++.++....+...+........ .+.+..|++.++|.+ .|+..+..++
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3322 22567899999999999888886644332122 456777899999965 5776665544
No 70
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=8.6e-06 Score=84.70 Aligned_cols=182 Identities=14% Similarity=0.199 Sum_probs=105.1
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc------ccCceEEEEEeCCCCCh
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI------NNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~wv~~~~~~~~ 252 (583)
-.+++|.+..++.+.+.+.... -.+.+.++|++|+|||++|+.+.+..... ..|...+ +.+... +
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~-~- 86 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA-S- 86 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc-c-
Confidence 3567999999999999986432 35688899999999999999887642110 1121111 111110 0
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHH-HhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEec-CchHHH
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITT-RKETVA 330 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~~~v~ 330 (583)
.....++..+...+.. -..+++-++++|++.......++.+...+......+.+|++| ......
T Consensus 87 --------------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 87 --------------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred --------------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 0001111111111111 012455689999996544445666666665444445555554 333332
Q ss_pred hh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 331 RM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
.. ......+++.+++.++....+...+...+..-. .+.+..|++.++|.+-.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 22 223567899999999999888887644332211 456777888999866533
No 71
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1e-05 Score=87.70 Aligned_cols=195 Identities=15% Similarity=0.128 Sum_probs=113.6
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-..... ...+..-.....
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~ 78 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR------INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVA 78 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHH
Confidence 3578999999999999996432 345678999999999999998876321111000 001111111111
Q ss_pred HHHH---------hhc-CccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE-ecCc
Q 036323 259 TIEE---------LEG-SAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI-TTRK 326 (583)
Q Consensus 259 il~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TtR~ 326 (583)
+... +.. ......++.++...+... ..+++-++|+|+++.......+.|+..+......+.+|+ ||..
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1110 000 000112222232222211 134556999999977666677788887876555665555 4444
Q ss_pred hHHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhh
Q 036323 327 ETVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTI 390 (583)
Q Consensus 327 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 390 (583)
..+...+ .....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+- ++..+
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 4444332 23678999999999998888876643332221 4456778899999775 44444
No 72
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=8.1e-06 Score=89.03 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=110.1
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEE-eCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVC-VSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~ 257 (583)
-.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...-...+....|.. +...+......+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~ 88 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCR 88 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHH
Confidence 3568999999999999885432 345688999999999999988876321111110001110 001111111222
Q ss_pred HHHHHhhcC-----ccccccHHHHHHHHHHH----hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE-ecCch
Q 036323 258 ATIEELEGS-----AIDLHELNSLLRRIGAN----IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI-TTRKE 327 (583)
Q Consensus 258 ~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TtR~~ 327 (583)
.+...-... ......++++...+... ..+++-++|+|+++.......+.|...+..-...+.+|+ |++..
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 221110000 00111122222222111 234556899999976555567778777766545555554 44444
Q ss_pred HHHhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc
Q 036323 328 TVARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL 385 (583)
Q Consensus 328 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL 385 (583)
.+... ......+++.+++.++....+.+.+...+..- ..+.+..|++.++|..-
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMR 223 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHH
Confidence 44433 23367899999999998888877654322111 15567789999999655
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.34 E-value=7e-06 Score=85.14 Aligned_cols=182 Identities=15% Similarity=0.136 Sum_probs=99.7
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
.....+.|+++.+++|.+.+..+-.. .+-..++-+.|+|++|+|||+||+.+++. ....| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch--
Confidence 34567899999999999877432100 00123456889999999999999999984 32233 22211
Q ss_pred ChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCccc-----------ccchHhhHHhh---cc--
Q 036323 251 DEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDD-----------YRKWEPFRNCL---MN-- 313 (583)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~-- 313 (583)
..+. ....+ ........+.+. -...+.+|+||+++.-. ......+...+ ..
T Consensus 190 --~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SELV----RKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHHH----HHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111 11000 001111222222 23467899999985421 11112232222 11
Q ss_pred CCCCceEEEecCchHHH-hhh----cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCc
Q 036323 314 GLRGSKILITTRKETVA-RMM----ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLP 384 (583)
Q Consensus 314 ~~~gs~IlvTtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 384 (583)
...+..||.||...... ..+ .....+++...+.++..++|..+....... ..-. ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 13466788888754322 111 124578999999999999999876433211 1112 345677776643
No 74
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=1.6e-05 Score=84.31 Aligned_cols=170 Identities=15% Similarity=0.075 Sum_probs=102.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.|+|..|+|||+|++.+++.......-..+++++ ..++...+...+.... .....+.+.+. +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 45688999999999999999988321111112233333 3456666666654311 11223333333 3
Q ss_pred ceeEEEcCCCcccc-cc-hHhhHHhhcc-CCCCceEEEecCch---------HHHhhhcCCCeEEcCCCChHHHHHHHHH
Q 036323 288 KFFMVLDNLWTDDY-RK-WEPFRNCLMN-GLRGSKILITTRKE---------TVARMMESTDIVYVQGLSELECWSLFRR 355 (583)
Q Consensus 288 ~~LlVlDdv~~~~~-~~-~~~l~~~l~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 355 (583)
.-+|||||+..... .. .+.+...+.. ...|..||+|+... .+...+...-++.+.+++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 45899999954321 12 2334443322 23455688887642 2223344567888999999999999998
Q ss_pred HhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhh
Q 036323 356 FALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSL 393 (583)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 393 (583)
.+-..+.. ..-.+++...|++.++|.|-.+.-+...
T Consensus 287 ~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 287 EIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 87432210 1223677888999999999887766543
No 75
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.9e-05 Score=86.68 Aligned_cols=191 Identities=14% Similarity=0.178 Sum_probs=108.7
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccccc---C-ceE-EEEEeCCCCChH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINN---F-EIR-VRVCVSDPFDEF 253 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---f-~~~-~wv~~~~~~~~~ 253 (583)
-..++|.+..++.|...+.... -.+.+.++|+.|+||||+|+.+++..--... + .|. +--+....++..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE
Confidence 3468899999999999996432 3567789999999999999888763110000 0 000 000000000000
Q ss_pred HHHHHHHHHhhc-CccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEE-EecCchHHH
Q 036323 254 NVAKATIEELEG-SAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKIL-ITTRKETVA 330 (583)
Q Consensus 254 ~~~~~il~~l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il-vTtR~~~v~ 330 (583)
. +.. ......++..+.+.+... ..+++-++|+|+++......+..|...+......+.+| +|+....+.
T Consensus 91 e--------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 E--------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred E--------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0 000 000111222333332221 13556699999997655556777777776544455444 555544444
Q ss_pred hh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 331 RM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 331 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
.. ......+++.+++.++....+...+...+.... .+.+..|++.++|.+.-+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 33 233578999999999999888876533322111 445677999999976533
No 76
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.8e-05 Score=83.04 Aligned_cols=184 Identities=14% Similarity=0.156 Sum_probs=108.4
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccc--cc-----------------cCce
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV--IN-----------------NFEI 240 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~-----------------~f~~ 240 (583)
..++|.+.-+..|.+++.... -.+.+.++|+.|+||||+|+.++....- .. .|..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 468899999999999996432 3456778999999999999888763110 00 0111
Q ss_pred EEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCce
Q 036323 241 RVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSK 319 (583)
Q Consensus 241 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 319 (583)
.++++.+.. ....+...+...+... ..+++-++|+|+++.......+.|...+....+...
T Consensus 90 ~~eidaas~------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 90 LIEIDAASN------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEEeCccC------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111111100 0111122222222211 135567999999966554556667777765444555
Q ss_pred EEEec-CchHHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 320 ILITT-RKETVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 320 IlvTt-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
+|++| +...+...+ .....+++.+++.++....+...+-..+...+ .+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 433333222 23567899999999998888876643332221 4556778899999776544443
No 77
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.26 E-value=1.5e-05 Score=90.82 Aligned_cols=183 Identities=17% Similarity=0.143 Sum_probs=95.3
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc---cccc-CceEEE-EEeCCCCChHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND---VINN-FEIRVR-VCVSDPFDEFN 254 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~-f~~~~w-v~~~~~~~~~~ 254 (583)
..++||+.++.+++..|.... ..-+.++|++|+||||||+.+++... +... ....+| ++++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~-------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------ 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR-------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------ 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC-------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------
Confidence 578999999999999986543 33456999999999999999887421 1111 122222 22221
Q ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHHh--cCCceeEEEcCCCcccc-----cchH--h-hHHhhccCCCCceEEEec
Q 036323 255 VAKATIEELEGSAIDLHELNSLLRRIGANI--AGQKFFMVLDNLWTDDY-----RKWE--P-FRNCLMNGLRGSKILITT 324 (583)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~-----~~~~--~-l~~~l~~~~~gs~IlvTt 324 (583)
+........+.+..+..+.+.+ .+++.+|++|+++.-.. ..-+ . |...+.. ...++|-||
T Consensus 254 --------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaT 323 (852)
T TIGR03345 254 --------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAAT 323 (852)
T ss_pred --------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEec
Confidence 0000001111111111111111 24689999999865211 1111 1 3232222 124566566
Q ss_pred CchHHHhh-------hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc
Q 036323 325 RKETVARM-------MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL 385 (583)
Q Consensus 325 R~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL 385 (583)
........ ......+.+.+++.++..+++....-.-.......-..+....+++.+.+..-
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 54322111 12256899999999999999754431111101111224445566666655443
No 78
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=3.6e-05 Score=82.22 Aligned_cols=195 Identities=12% Similarity=0.107 Sum_probs=111.8
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|-+.-++.|...+... .-.++..++|+.|+||||+|+.+.+..--....+. .++........
T Consensus 13 fdeiiGqe~v~~~L~~~I~~g------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~ 79 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNN------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQS 79 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcC------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHH
Confidence 356899999999999988543 23557789999999999999877653110000000 00000000000
Q ss_pred HHHHhhc-----CccccccHHHHHHHHHHH----hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-H
Q 036323 259 TIEELEG-----SAIDLHELNSLLRRIGAN----IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-T 328 (583)
Q Consensus 259 il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~ 328 (583)
+...... ........+.+.+.+... ..+++-++|+|+++..+....+.|+..+......+.+|++|.+. .
T Consensus 80 ~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~k 159 (535)
T PRK08451 80 ALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLK 159 (535)
T ss_pred HhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhh
Confidence 0000000 000001122222222110 12455689999997766667777887776655667766666553 2
Q ss_pred HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 329 VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
+...+ .....+++.+++.++....+.+.+...+.... .+.+..|++.++|.+.-+..+
T Consensus 160 L~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 160 LPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 22222 22578999999999999888876643332222 456778999999988554444
No 79
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.6e-05 Score=84.15 Aligned_cols=195 Identities=13% Similarity=0.161 Sum_probs=110.9
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+.-++.|.+.+.... -.+.+.++|+.|+||||+|+.+.+...-..... ...+........
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~ 81 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR------VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVE 81 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHH
Confidence 3578999999999999886432 345678999999999999988876421111000 000111111111
Q ss_pred HHHHh-------hcC-ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE-ecCchH
Q 036323 259 TIEEL-------EGS-AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI-TTRKET 328 (583)
Q Consensus 259 il~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TtR~~~ 328 (583)
+...- .+. .....++.++...+... ..++.-++|+|+++..+....+.|...+......+.+|+ ||....
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 11100 000 00111222233222211 124455899999976665667778877766555665554 544444
Q ss_pred HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCc-cchhhh
Q 036323 329 VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLP-LAAKTI 390 (583)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~ 390 (583)
+...+ .....+++.+++.++....+...+-..+...+ .+....|++.++|.. .|+..+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 44332 23567889999999988888776533322222 455677889998866 444444
No 80
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=3.3e-05 Score=78.64 Aligned_cols=178 Identities=13% Similarity=0.129 Sum_probs=112.6
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
.+..++||+.|++.+.+++...- .....+.+-|.|-+|.|||.+...++.+..-...=..++.+++..-.....++.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl---e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL---ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh---hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 46789999999999999997654 345677888999999999999999988633222223557777776667788888
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcCC--ceeEEEcCCCcccccchHhhHHhhcc-CCCCceEEEecCc--hHHH--
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAGQ--KFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILITTRK--ETVA-- 330 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~IlvTtR~--~~v~-- 330 (583)
.|...+...........+.+..+.....+. .+|+|+|.++.-....-..+...+.+ .-+++++|+.--. -+..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 888887332222222244455555555433 58999999854222222222222322 2345555543211 1111
Q ss_pred -----hh-h-cCCCeEEcCCCChHHHHHHHHHHhc
Q 036323 331 -----RM-M-ESTDIVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 331 -----~~-~-~~~~~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
.. . .....+...|-+.++-.++|....-
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 11 1 1256788899999999999998874
No 81
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.4e-05 Score=84.64 Aligned_cols=180 Identities=14% Similarity=0.176 Sum_probs=110.4
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc---------------------cccc
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND---------------------VINN 237 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~ 237 (583)
-.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+... ...+
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 3468999999999999986432 356688999999999999987765311 0112
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCC
Q 036323 238 FEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLR 316 (583)
Q Consensus 238 f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 316 (583)
|+. ..++....... .++..+...+... ..+++-++|+|++..-+...++.|...+..-..
T Consensus 90 ~n~-~~ld~~~~~~v------------------d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 90 YNI-HELDAASNNSV------------------DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred Cce-EEecccccCCH------------------HHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 221 11221111111 1111222111111 124455889999977666677788888866555
Q ss_pred CceEEE-ecCchHHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 317 GSKILI-TTRKETVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 317 gs~Ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
++.+|+ |+....+...+ .....+++.+++.++....+.+.+...+.... .+.+..|++.++|..--+
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 666555 44444444332 23678999999999999888876643332211 445677999999976544
No 82
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=3.2e-05 Score=81.94 Aligned_cols=183 Identities=13% Similarity=0.153 Sum_probs=107.5
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc---------------------cc
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI---------------------NN 237 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~ 237 (583)
-.+++|.+..++.|.+.+.... -...+.++|++|+||||+|+.+.+...-. .+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS 89 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence 4578999999999999985432 34678899999999999998886531110 01
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCC
Q 036323 238 FEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLR 316 (583)
Q Consensus 238 f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 316 (583)
++ .+++....... ..++..+.+.+.-. ..+++-++|+|++........+.|...+.....
T Consensus 90 ~d-~~~i~g~~~~g------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 90 LD-VLEIDGASHRG------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred Cc-eEEeeccccCC------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 11 11111100000 11112222211110 135667899999965444455667777765445
Q ss_pred CceEEEecCc-hHHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhh
Q 036323 317 GSKILITTRK-ETVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTI 390 (583)
Q Consensus 317 gs~IlvTtR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 390 (583)
++.+|++|.. ..+...+ .....+++.+++.++....+...+-..+..- ..+.+..|++.++|.+. |+..+
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666665533 3333222 2356899999999999888887654322111 14567789999999764 44433
No 83
>PF14516 AAA_35: AAA-like domain
Probab=98.20 E-value=0.00011 Score=74.87 Aligned_cols=203 Identities=12% Similarity=0.066 Sum_probs=118.3
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC-----CC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP-----FD 251 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~ 251 (583)
.+.+..|.|...-+++.+.|..+ ...+.|.|+-.+|||+|...+.+..+. ..|. .+++++... .+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~--------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~ 77 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP--------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSD 77 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC--------CCEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCC
Confidence 44556789986667777777532 358899999999999999998875322 2343 456776542 24
Q ss_pred hHHHHHHHHHHhhcC----cc-------ccccHHHHHHHHHHHh---cCCceeEEEcCCCcccc--cchHhhHHhhc---
Q 036323 252 EFNVAKATIEELEGS----AI-------DLHELNSLLRRIGANI---AGQKFFMVLDNLWTDDY--RKWEPFRNCLM--- 312 (583)
Q Consensus 252 ~~~~~~~il~~l~~~----~~-------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~--~~~~~l~~~l~--- 312 (583)
....++.+...+... .. ...........+.+++ .+++.+|+||+++.--. .....+...|.
T Consensus 78 ~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~ 157 (331)
T PF14516_consen 78 LEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWY 157 (331)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHH
Confidence 555555555444332 11 0112222333343332 26899999999954211 11122333221
Q ss_pred -cCC----CCc-e-EEEecCchHHHhh-----hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhC
Q 036323 313 -NGL----RGS-K-ILITTRKETVARM-----MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKC 380 (583)
Q Consensus 313 -~~~----~gs-~-IlvTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c 380 (583)
... ... + |++.+........ +.....+.|++++.+|...|+..+... .. ....++|...+
T Consensus 158 ~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~t 229 (331)
T PF14516_consen 158 EQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWT 229 (331)
T ss_pred HhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHH
Confidence 111 111 1 2222211111111 112457899999999999999886421 11 22378899999
Q ss_pred CCCccchhhhhhhhccC
Q 036323 381 KGLPLAAKTIGSLLQFK 397 (583)
Q Consensus 381 ~GlPLai~~~~~~L~~~ 397 (583)
||+|.-+..++..+...
T Consensus 230 gGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 230 GGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999999664
No 84
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.20 E-value=1.6e-05 Score=89.72 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=85.5
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCc---cccccC-ceEEEEEeCCCCChHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDN---DVINNF-EIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~f-~~~~wv~~~~~~~~~~~ 255 (583)
..++||++++++++..|.... ..-+.++|++|+|||++|+.+++.. .+...+ ...+|. +. ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~-- 247 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MG-- 247 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HH--
Confidence 468999999999999986443 3345799999999999999988742 111112 233332 11 11
Q ss_pred HHHHHHHhhcCccccccHHHHHHHHHHHh-cCCceeEEEcCCCccc---------ccchHhhHHhhccCCCC-ceEEEec
Q 036323 256 AKATIEELEGSAIDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDD---------YRKWEPFRNCLMNGLRG-SKILITT 324 (583)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~g-s~IlvTt 324 (583)
.++. ...-..+.+..+..+.+.+ ..++.+|++|+++.-. .+.-+.+...+. .| .++|-+|
T Consensus 248 --~l~a----~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaT 318 (731)
T TIGR02639 248 --SLLA----GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGST 318 (731)
T ss_pred --HHhh----hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEec
Confidence 1111 0001112222333333322 3468899999996321 011122333332 23 3455444
Q ss_pred CchHHHh------hh-cCCCeEEcCCCChHHHHHHHHHHh
Q 036323 325 RKETVAR------MM-ESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 325 R~~~v~~------~~-~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
....... .+ .....+++.+++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4322111 11 225689999999999999998654
No 85
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.19 E-value=2.8e-06 Score=85.99 Aligned_cols=90 Identities=19% Similarity=0.147 Sum_probs=59.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC--ChHHHHHHHHHHhhcCcccccc------HHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF--DEFNVAKATIEELEGSAIDLHE------LNSLLR 278 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~------~~~~~~ 278 (583)
...-..|+|++|+|||||++.++++.... +|+..+|+.+.+.. .+.++++.+...+-....+... .....+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45567899999999999999999975444 89999999998876 6667777765322211111110 111122
Q ss_pred HHHHH-hcCCceeEEEcCCC
Q 036323 279 RIGAN-IAGQKFFMVLDNLW 297 (583)
Q Consensus 279 ~l~~~-l~~k~~LlVlDdv~ 297 (583)
.-... -.++++||++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 11221 25799999999994
No 86
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=5.6e-05 Score=82.98 Aligned_cols=196 Identities=13% Similarity=0.144 Sum_probs=111.3
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
..++|.+..+..|..++.... -.+.+.++|+.|+||||+|+.+++...-..... . ....+......+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~----~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-P----TPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-C----CCCCCcccHHHHHH
Confidence 468899999999999886432 235678999999999999999877421110000 0 00111112222222
Q ss_pred HHHhhcC-----c---cccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hHH
Q 036323 260 IEELEGS-----A---IDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ETV 329 (583)
Q Consensus 260 l~~l~~~-----~---~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v 329 (583)
....... . .....+.++...+... ..+++-++|||+++......++.|+..+......+.+|++|.+ ..+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 2211110 0 0111222222222111 1245568999999766656677787777654445555544443 333
Q ss_pred Hhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 330 ARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 330 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
...+ .....+++.+++.++....+...+...+.... .+.+..|++.++|.+..+..+
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 23567888999999988888776543222111 345778999999988655443
No 87
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=6.9e-05 Score=81.35 Aligned_cols=194 Identities=13% Similarity=0.160 Sum_probs=112.5
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|-+.-++.|...+.... -.+.+.++|+.|+||||+|+.+++...-...... .++..-...+.
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~ 81 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKS 81 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHH
Confidence 3478999999999999996432 3567889999999999999998774211110000 00000001111
Q ss_pred HHHH-------hhcCc-cccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hH
Q 036323 259 TIEE-------LEGSA-IDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ET 328 (583)
Q Consensus 259 il~~-------l~~~~-~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~ 328 (583)
+... +.+.. ....++.++.+.+... ..+++-++|+|+++..+...++.|...+......+.+|++|.. ..
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 1110 00000 1111222222222211 2355668999999766655677777777655556666655543 34
Q ss_pred HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhh
Q 036323 329 VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKT 389 (583)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 389 (583)
+...+ .....+++.+++.++....+.+.+...+..- -.+.+..|++.++|.+..+..
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 43322 2256789999999999888887764333222 255677789999998764443
No 88
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.17 E-value=7.5e-05 Score=78.70 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=92.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccC--ceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
...+.|+|.+|+|||+|++.+++.. .... ..+++++. .++...+...+... ..+.... .+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~~----~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFKE----KYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHHH----HHH
Confidence 4568899999999999999999843 2222 23445542 33444455444322 1222222 222
Q ss_pred CCceeEEEcCCCcccccc--hHhhHHhhcc-CCCCceEEEecCc-hHH--------HhhhcCCCeEEcCCCChHHHHHHH
Q 036323 286 GQKFFMVLDNLWTDDYRK--WEPFRNCLMN-GLRGSKILITTRK-ETV--------ARMMESTDIVYVQGLSELECWSLF 353 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~IlvTtR~-~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf 353 (583)
+ .-+|||||++...... .+.+...+.. ...+..+|+||.. +.. ...+.....+++.+.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 3489999996422111 1223333322 1235567887764 221 122223457899999999999999
Q ss_pred HHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhh
Q 036323 354 RRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKT 389 (583)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 389 (583)
.+.+......- -+++...|++.+.|.+-.+.-
T Consensus 278 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 278 QKKAEEEGLEL----PDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCCHHHHHH
Confidence 98874432211 256677888888887665443
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.17 E-value=3.1e-05 Score=78.79 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=87.1
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
.-.+++|.+...+.+..++... ....++.++|++|+|||++|+.+++.. ... ...++.+. .. ....+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~-~~~i~ 85 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKG------RIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR-IDFVR 85 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcC------CCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc-HHHHH
Confidence 3467899999999999998643 245688889999999999999998742 111 23334333 11 11111
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcc-cccchHhhHHhhccCCCCceEEEecCchH-HHhhh-c
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMNGLRGSKILITTRKET-VARMM-E 334 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~~~-~ 334 (583)
..+.... ... .+.+.+-+||||++... .......+...+.....++.+|+||.... +...+ .
T Consensus 86 ~~l~~~~-------------~~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 86 NRLTRFA-------------STV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHHHHH-------------Hhh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 1111110 000 01234568999999654 22223335444554556778888886543 11111 2
Q ss_pred CCCeEEcCCCChHHHHHHHHH
Q 036323 335 STDIVYVQGLSELECWSLFRR 355 (583)
Q Consensus 335 ~~~~~~l~~L~~~ea~~Lf~~ 355 (583)
....+.+...+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 245677777888877766554
No 90
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.15 E-value=4.9e-05 Score=72.67 Aligned_cols=269 Identities=13% Similarity=0.112 Sum_probs=138.3
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+|+|.++-+++|.=.+.... ......--+.++|++|.||||||.-+++... ..+. +.-.....
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk--~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg--vn~k----~tsGp~le------- 89 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAK--KRGEALDHVLLFGPPGLGKTTLAHIIANELG--VNLK----ITSGPALE------- 89 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHH--hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc--CCeE----eccccccc-------
Confidence 4579999998888887775432 1345677899999999999999999998432 2221 11111101
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhc--------cCCCCce-----------
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLM--------NGLRGSK----------- 319 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~--------~~~~gs~----------- 319 (583)
...| +...|.. | ...=+|++|.++..+...-+-+...+. ..+++++
T Consensus 90 ----------K~gD---laaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 90 ----------KPGD---LAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred ----------Chhh---HHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 1111 2221211 1 233466677775543222121222211 1122222
Q ss_pred EEEecCchHHHhhhcC--CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccC
Q 036323 320 ILITTRKETVARMMES--TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFK 397 (583)
Q Consensus 320 IlvTtR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~ 397 (583)
|=.|||.-.+...+.. .-+.+++--+.+|-.+...+.+..-...- -++.+.+|+++..|-|--..-+-+..
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIAnRLLrRV--- 227 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIANRLLRRV--- 227 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHHHHHHHHH---
Confidence 3358886555443332 45677888899999999988773322211 25567889999999997544333322
Q ss_pred CCHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhccCCCCcccChHHHHHHHHHhccccccCCchHHH
Q 036323 398 RTKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLKGNNEMKV 477 (583)
Q Consensus 398 ~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~ 477 (583)
.++..+.....-. ....+.....|..--..|+...++.+..+.-.-.+-++..+.+...- +....+.|+
T Consensus 228 ---RDfa~V~~~~~I~-~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~l-------ge~~~TiEd 296 (332)
T COG2255 228 ---RDFAQVKGDGDID-RDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAAL-------GEDRDTIED 296 (332)
T ss_pred ---HHHHHHhcCCccc-HHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHh-------cCchhHHHH
Confidence 2232222211000 00001112223332333444444444433322222234444443221 123346666
Q ss_pred HHHHHHHHHhhcccccceecC
Q 036323 478 IGLEYFDCLASRSFYQQFVKD 498 (583)
Q Consensus 478 ~~~~~l~~L~~rsll~~~~~~ 498 (583)
+-|-| |++.||+|....+
T Consensus 297 v~EPy---Liq~gfi~RTpRG 314 (332)
T COG2255 297 VIEPY---LIQQGFIQRTPRG 314 (332)
T ss_pred HHhHH---HHHhchhhhCCCc
Confidence 66665 7899999976553
No 91
>PRK06620 hypothetical protein; Validated
Probab=98.14 E-value=2.8e-05 Score=73.95 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=79.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQK 288 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 288 (583)
+.+.|+|++|+|||+|++.+++... . .++. .... . + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------~-------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------N-------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------c-------h-------hHH-hcC
Confidence 5789999999999999999887432 1 1111 0000 0 0 001 123
Q ss_pred eeEEEcCCCcccccchHhhHHhhcc-CCCCceEEEecCchH-------HHhhhcCCCeEEcCCCChHHHHHHHHHHhccC
Q 036323 289 FFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILITTRKET-------VARMMESTDIVYVQGLSELECWSLFRRFALSG 360 (583)
Q Consensus 289 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~IlvTtR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 360 (583)
-+|++||++.-.. ..+...+.. ...|..||+|++... ....+...-++++++++.++-..++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 5789999952211 123222221 134668999887432 22334446689999999999888888776422
Q ss_pred CCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 361 RTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
... --+++.+-|++.+.|.--.+.
T Consensus 164 ~l~----l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 SVT----ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCC----CCHHHHHHHHHHccCCHHHHH
Confidence 111 125677778888877554443
No 92
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.12 E-value=3.3e-05 Score=73.25 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=79.0
Q ss_pred ccccccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 173 STSLIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 173 ~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.+.++....++|-|.+++.|++....-- ......-+.++|..|+|||+|++.+.+...-++ .--|.+.
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl---~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~----- 87 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFL---QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVS----- 87 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHH---cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEEC-----
Confidence 3445566789999999999988654332 223455677899999999999999887311111 1112222
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCC-cccccchHhhHHhhccC----CCCceEEEecCch
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLW-TDDYRKWEPFRNCLMNG----LRGSKILITTRKE 327 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~----~~gs~IlvTtR~~ 327 (583)
..+..++..+.+.|+. ...+|+|++||+- +.+...+..|+..|..+ +.+..|-.||..+
T Consensus 88 --------------k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 88 --------------KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred --------------HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 1233444555555553 4579999999983 33334566677766432 2344455566555
Q ss_pred HHH
Q 036323 328 TVA 330 (583)
Q Consensus 328 ~v~ 330 (583)
.+.
T Consensus 152 HLv 154 (249)
T PF05673_consen 152 HLV 154 (249)
T ss_pred hcc
Confidence 443
No 93
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.11 E-value=0.0001 Score=78.12 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=94.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccccc-Cc-eEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINN-FE-IRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
...+.|+|.+|+|||+|++.+++. .... .. .++|++. .++...+...+... ..+. +.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 445899999999999999999984 3222 22 3555543 34555555555322 1122 222233
Q ss_pred CCceeEEEcCCCccc-ccch-HhhHHhhcc-CCCCceEEEecC-chHHH--------hhhcCCCeEEcCCCChHHHHHHH
Q 036323 286 GQKFFMVLDNLWTDD-YRKW-EPFRNCLMN-GLRGSKILITTR-KETVA--------RMMESTDIVYVQGLSELECWSLF 353 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~IlvTtR-~~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf 353 (583)
.+.-+|+|||++... ...+ +.+...+.. ...|..||+||. .+.-. ..+.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 356689999996321 1111 223333321 123456888874 33221 12333568899999999999999
Q ss_pred HHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhh
Q 036323 354 RRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKT 389 (583)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 389 (583)
.+.+...... --+++...|++.+.|.--.+.-
T Consensus 273 ~~~~~~~~~~----l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 273 RKMLEIEHGE----LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHhcCCC----CCHHHHHHHHhccccCHHHHHH
Confidence 9887432221 1256778888888886554443
No 94
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.10 E-value=1.5e-05 Score=82.46 Aligned_cols=120 Identities=11% Similarity=0.101 Sum_probs=75.6
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
..++++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|..+.|+.+....+..++...
T Consensus 174 l~d~~i~e~~le~l~~~L~~~---------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G 244 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK---------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG 244 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC---------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcc
Confidence 346788899999999998543 36778999999999999999886544556788889999887775554432
Q ss_pred HHHHhhcCccccccH-HHHHHHHHHHh--cCCceeEEEcCCCcccccc-hHhhHHhh
Q 036323 259 TIEELEGSAIDLHEL-NSLLRRIGANI--AGQKFFMVLDNLWTDDYRK-WEPFRNCL 311 (583)
Q Consensus 259 il~~l~~~~~~~~~~-~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~-~~~l~~~l 311 (583)
. ......-.-. .-..+.+.... .+++++||+|++...+... +..+...+
T Consensus 245 ~----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 245 Y----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred c----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 2 1111110000 11222222222 2468999999996554333 33444333
No 95
>CHL00181 cbbX CbbX; Provisional
Probab=98.09 E-value=0.00019 Score=71.41 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=73.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.++|++|+|||++|+.+++.....+.-...-|+.++. .. +.....+.. . ......+... .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~--~---~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT--A---PKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc--h---HHHHHHHHHc---c
Confidence 34578999999999999999976321111111112444441 11 222221111 0 1111222221 2
Q ss_pred ceeEEEcCCCcc---------cccchHhhHHhhccCCCCceEEEecCchHHHhhh--------cCCCeEEcCCCChHHHH
Q 036323 288 KFFMVLDNLWTD---------DYRKWEPFRNCLMNGLRGSKILITTRKETVARMM--------ESTDIVYVQGLSELECW 350 (583)
Q Consensus 288 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~--------~~~~~~~l~~L~~~ea~ 350 (583)
.-+|+||++..- ..+....|...+.....+.+||+++........+ .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999541 1112233444444444566777777643332111 12457999999999999
Q ss_pred HHHHHHhcc
Q 036323 351 SLFRRFALS 359 (583)
Q Consensus 351 ~Lf~~~a~~ 359 (583)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998887643
No 96
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.08 E-value=5.6e-05 Score=78.87 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=89.2
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
.....+.|+++.+++|.+.+..+-.. .+-..++-|.++|++|+|||+||+.+++.. ... |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh--
Confidence 33457899999999998876422100 011345678899999999999999999842 222 222221
Q ss_pred ChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcc-----------cccchHhhHHhhcc-----
Q 036323 251 DEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTD-----------DYRKWEPFRNCLMN----- 313 (583)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~~----- 313 (583)
..+ .....+. .......+.+. -...+.+|+||+++.- +......+...+..
T Consensus 199 --~~l----~~~~~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 --SEL----VQKFIGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --HHH----hHhhccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 1111100 01122222222 2346789999999531 01111223333311
Q ss_pred CCCCceEEEecCchHHHh-hh-c---CCCeEEcCCCChHHHHHHHHHHhc
Q 036323 314 GLRGSKILITTRKETVAR-MM-E---STDIVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 314 ~~~gs~IlvTtR~~~v~~-~~-~---~~~~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
...+..||.||....... .+ . -...+++++.+.++-.++|+.+..
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 123556777776543221 11 1 145789999999999999998764
No 97
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.07 E-value=0.00012 Score=78.11 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=93.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccC--ceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI 284 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (583)
....+.|+|.+|+|||+|++.+++. ....+ ..+++++.. .+...+...+... ..+.. .+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~~----~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEEF----KEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHHH----HHHH
Confidence 3456889999999999999999984 33332 234455432 3334444444321 11222 2233
Q ss_pred cCCceeEEEcCCCccccc--chHhhHHhhcc-CCCCceEEEecCchH---------HHhhhcCCCeEEcCCCChHHHHHH
Q 036323 285 AGQKFFMVLDNLWTDDYR--KWEPFRNCLMN-GLRGSKILITTRKET---------VARMMESTDIVYVQGLSELECWSL 352 (583)
Q Consensus 285 ~~k~~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 352 (583)
. +.-+|||||++..... ..+.+...+.. ...|..||+||.... +...+.....+++.+.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 3458999999542211 11233333321 123455788776431 122333456899999999999999
Q ss_pred HHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 353 FRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 353 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
+.+.+-..... --+++...|++.+.|..-.+.
T Consensus 289 l~~~~~~~~~~----l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGID----LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCC----CCHHHHHHHHcCcCCCHHHHH
Confidence 99887432211 125678889999998776544
No 98
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=9.8e-06 Score=82.52 Aligned_cols=90 Identities=18% Similarity=0.126 Sum_probs=61.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC--CChHHHHHHHHHHhhcCcccc--cc----HHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP--FDEFNVAKATIEELEGSAIDL--HE----LNSLLR 278 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~--~~----~~~~~~ 278 (583)
....++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .++.++++.++..+-....+. .. .....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4567899999999999999999986433 37999999999865 678888888854333221111 11 112222
Q ss_pred HHHHH-hcCCceeEEEcCCC
Q 036323 279 RIGAN-IAGQKFFMVLDNLW 297 (583)
Q Consensus 279 ~l~~~-l~~k~~LlVlDdv~ 297 (583)
..... -.+++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 25899999999994
No 99
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.06 E-value=2.9e-05 Score=88.76 Aligned_cols=154 Identities=20% Similarity=0.177 Sum_probs=84.3
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc---ccccC-ceEEEEEeCCCCChHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND---VINNF-EIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~ 255 (583)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH
Confidence 468999999999999996543 33456999999999999998877421 11111 233442 1 11111
Q ss_pred HHHHHHHhhcCccccccHHHHHHHHHHHh-cCCceeEEEcCCCccc-------ccchHh-hHHhhccCCCCceEEEecCc
Q 036323 256 AKATIEELEGSAIDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDD-------YRKWEP-FRNCLMNGLRGSKILITTRK 326 (583)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~IlvTtR~ 326 (583)
+.+.. -..+.+..+..+.+.+ ..++.+|++|+++.-. ...... |...+.. ...++|.+|..
T Consensus 247 -------~ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~ 316 (821)
T CHL00095 247 -------LAGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTL 316 (821)
T ss_pred -------hccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCH
Confidence 11111 1122222222222222 3568999999995310 011222 2222222 12455655554
Q ss_pred hHHHh------h-hcCCCeEEcCCCChHHHHHHHHH
Q 036323 327 ETVAR------M-MESTDIVYVQGLSELECWSLFRR 355 (583)
Q Consensus 327 ~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~ 355 (583)
..... . ......+.+...+.++...++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 44321 1 12256788999999998888764
No 100
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.05 E-value=5.4e-05 Score=74.67 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=80.2
Q ss_pred ceeechhHHHHHHHHhhcC--------CCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 181 EVRGRDEEMRSIKSMLLCQ--------GSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.++|.+..+++|.+..... .+-...+....+.++|++|+||||+|+.+++.....+......++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788877766665432211 0001123456788999999999999999876311111111112233221
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc--------ccchHhhHHhhccCCCCceEEEec
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD--------YRKWEPFRNCLMNGLRGSKILITT 324 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IlvTt 324 (583)
.++ .....+. ........+... ..-+|+||+++.-. .+..+.+...+........+++++
T Consensus 83 ~~l----~~~~~g~-----~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADL----VGEYIGH-----TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHh----hhhhccc-----hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 1111000 011112222221 23589999996421 112333444443433344555665
Q ss_pred CchHHHh------hhc-C-CCeEEcCCCChHHHHHHHHHHhc
Q 036323 325 RKETVAR------MME-S-TDIVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 325 R~~~v~~------~~~-~-~~~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
....... .+. . ...+++++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4332211 111 1 34688999999999999988764
No 101
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.05 E-value=0.00013 Score=72.66 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=71.4
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCce
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKF 289 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 289 (583)
-+.++|++|+|||++|+.+++.....+......|+.++. .+ +...+.+.. . ......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~--~---~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT--A---PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc--h---HHHHHHHHHc---cCc
Confidence 578999999999999977665311111111112444432 11 222222211 1 1111222221 336
Q ss_pred eEEEcCCCcc---------cccchHhhHHhhccCCCCceEEEecCchHHHhhh--c------CCCeEEcCCCChHHHHHH
Q 036323 290 FMVLDNLWTD---------DYRKWEPFRNCLMNGLRGSKILITTRKETVARMM--E------STDIVYVQGLSELECWSL 352 (583)
Q Consensus 290 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~--~------~~~~~~l~~L~~~ea~~L 352 (583)
+|+||++..- ....+..|...+.....+.+||+++......... . ....+++++++.+|-..+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999521 1122344555555545566777776543222111 1 145789999999999999
Q ss_pred HHHHhc
Q 036323 353 FRRFAL 358 (583)
Q Consensus 353 f~~~a~ 358 (583)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888763
No 102
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.00021 Score=75.54 Aligned_cols=154 Identities=15% Similarity=0.059 Sum_probs=86.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.|+|++|+|||+|++.+++.. ......+++++ ...+...+...+... .. ..++..+. +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 4568899999999999999999843 22222234443 233444444444321 11 12333332 4
Q ss_pred ceeEEEcCCCcccccc--hHhhHHhhcc-CCCCceEEEecCc-hH--------HHhhhcCCCeEEcCCCChHHHHHHHHH
Q 036323 288 KFFMVLDNLWTDDYRK--WEPFRNCLMN-GLRGSKILITTRK-ET--------VARMMESTDIVYVQGLSELECWSLFRR 355 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~IlvTtR~-~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 355 (583)
.-+|++||+....... .+.+...+.. ...|..||+||.. +. +...+.....+.+.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4589999985432211 1223333321 1235578888754 22 122233457889999999999999988
Q ss_pred HhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 356 FALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
.+-..... --+++...|+..+.|.
T Consensus 283 k~~~~~~~----l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIR----IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCC----CCHHHHHHHHHhcCCC
Confidence 77432211 1245566676666654
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.04 E-value=3.9e-05 Score=74.11 Aligned_cols=183 Identities=14% Similarity=0.152 Sum_probs=112.5
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceE-EEEEeCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIR-VRVCVSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~~~~~~~ 257 (583)
-.+++|.+..++.|.+.+... ..+....+|++|.|||+-|..+++..--.+.|.++ +-.++|..-... +.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~-------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR-------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc-------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh
Confidence 357899999999999999652 46788899999999999998887643333445443 223444322111 000
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHh--cCCc-eeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hHHHhhh
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANI--AGQK-FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ETVARMM 333 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~~~~ 333 (583)
. ...+...+........ ..++ -++|||+++....+.|..++..+......++.|+.+.. ..+...+
T Consensus 107 ~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 E----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred h----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 0 0111111111110000 1123 38899999887778999999888776666665544433 2222222
Q ss_pred -cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 334 -ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 334 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
.....+..++|.+++...-+...+-.++..-+ .+..+.|++.++|-
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCc
Confidence 12456888999999999888888755443333 45567789999884
No 104
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00016 Score=78.76 Aligned_cols=193 Identities=14% Similarity=0.145 Sum_probs=109.7
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+..++.|.+.+.... -.+.+.++|+.|+|||++|+.+.+...-...-+ ..+++.......
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~ 81 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKA 81 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHH
Confidence 4578999999999999986543 356777899999999999988865311100000 011111122222
Q ss_pred HHHHhhcC-----c---cccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEE-ecCchH
Q 036323 259 TIEELEGS-----A---IDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILI-TTRKET 328 (583)
Q Consensus 259 il~~l~~~-----~---~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TtR~~~ 328 (583)
+....... . .....+.++...+... ..++.-++|+|+++.-....+..|...+......+.+|+ ||....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 21111000 0 0111122222222211 135566889999976555567777777755444555554 444443
Q ss_pred HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 329 VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
+...+ .....+++.+++.++....+...+-..+...+ .+.+..|++.++|.+..+.
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 33322 23567889999999998888876643322122 4556778888888776433
No 105
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=8.6e-05 Score=73.82 Aligned_cols=167 Identities=18% Similarity=0.204 Sum_probs=103.2
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
++.|.+|+.++..+..++.... ..-+..|.|.|-+|.|||.+.+.+++... ...+|+++-+.++..-++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~----~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS----CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC----cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHH
Confidence 5678999999999998885443 23456679999999999999999998541 13589999999999999999
Q ss_pred HHHHhhcCcccc-------ccHHHHHHHHHH--Hhc--CCceeEEEcCCCcccccchHh-hHHh---hcc-CCCCceEEE
Q 036323 259 TIEELEGSAIDL-------HELNSLLRRIGA--NIA--GQKFFMVLDNLWTDDYRKWEP-FRNC---LMN-GLRGSKILI 322 (583)
Q Consensus 259 il~~l~~~~~~~-------~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~---l~~-~~~gs~Ilv 322 (583)
|+........+. .+.......+.+ ... ++.++|||||++. ..+.+. +... +.. .....-+|+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~ii 153 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVII 153 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEE
Confidence 999985222111 122223333333 112 4589999999943 222222 1111 111 112233344
Q ss_pred ecCc--hHH-HhhhcC--CCeEEcCCCChHHHHHHHHHH
Q 036323 323 TTRK--ETV-ARMMES--TDIVYVQGLSELECWSLFRRF 356 (583)
Q Consensus 323 TtR~--~~v-~~~~~~--~~~~~l~~L~~~ea~~Lf~~~ 356 (583)
++-. +.. ...++. .-++..+.-+.+|...++.+.
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4332 222 221333 345566777888888877653
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=0.00022 Score=76.94 Aligned_cols=161 Identities=12% Similarity=0.047 Sum_probs=92.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.|+|..|+|||.|++.+++.......-..+++++. .++...+...+... ..+. +++.+. +
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~~----f~~~y~-~ 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGDS----FRRRYR-E 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHHH----HHHHhh-c
Confidence 345899999999999999999984221111123344442 33444444443321 1122 222222 2
Q ss_pred ceeEEEcCCCcccc-cchH-hhHHhhcc-CCCCceEEEecCch---------HHHhhhcCCCeEEcCCCChHHHHHHHHH
Q 036323 288 KFFMVLDNLWTDDY-RKWE-PFRNCLMN-GLRGSKILITTRKE---------TVARMMESTDIVYVQGLSELECWSLFRR 355 (583)
Q Consensus 288 ~~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 355 (583)
.=+|||||+..... ..|. .|...+.. ...|..|||||... .+...+...-.+++.+.+.+.-..++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 35899999964322 1222 23333322 23356688888752 2333345577899999999999999998
Q ss_pred HhccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 356 FALSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
.+......- -+++..-|++.+.+..-.|.
T Consensus 458 ka~~r~l~l----~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 458 KAVQEQLNA----PPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHhcCCCC----CHHHHHHHHHhccCCHHHHH
Confidence 874432221 25667777777776544433
No 107
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00015 Score=73.56 Aligned_cols=97 Identities=11% Similarity=0.095 Sum_probs=66.8
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH-HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCC
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET-VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTP 363 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (583)
+++-++|||+++..+....+.|...+.....++.+|+||.+.. +...+ +....+.+.+++.+++.+.+..... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-E--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-c---
Confidence 4445667899987777778888888866556777777776653 33332 2367899999999999988876531 1
Q ss_pred CCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 364 SECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 364 ~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
.. .+.+..++..++|.|+....+
T Consensus 181 ~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 233456789999999755444
No 108
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00011 Score=74.18 Aligned_cols=197 Identities=15% Similarity=0.085 Sum_probs=111.8
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccc-------------cccCceEEEEEe
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV-------------INNFEIRVRVCV 246 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~ 246 (583)
.+++|.+..++.+...+..+. -.+...++|+.|+||+++|..+.+..-- ...++-..|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEec
Confidence 367899999999999986442 3578899999999999999776542100 111222334421
Q ss_pred CCCCChHHHHHHHHHHhh--cCccccccHHHHHHHHHHHh-----cCCceeEEEcCCCcccccchHhhHHhhccCCCCce
Q 036323 247 SDPFDEFNVAKATIEELE--GSAIDLHELNSLLRRIGANI-----AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSK 319 (583)
Q Consensus 247 ~~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 319 (583)
.....-..+-..-+...+ ......-.++++ +.+.+.+ .+++-++|+|+++..+....+.|+..+....+..-
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~f 156 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTL 156 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeE
Confidence 100000000001111111 001111112221 2233333 35566999999977666677778888855443444
Q ss_pred EEEecCchHHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 320 ILITTRKETVARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 320 IlvTtR~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
|++|+....+...+. ....+++.+++.++..+.+.+..... .. ......++..++|.|..+...
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---IL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc---cc----hhHHHHHHHHcCCCHHHHHHH
Confidence 444544444443333 36789999999999999998864211 10 111356889999999766543
No 109
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00043 Score=65.58 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=106.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeC-CCCChHHHHHHHHHHhhcCccc--cccHHHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVS-DPFDEFNVAKATIEELEGSAID--LHELNSLLRRIGA 282 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~ 282 (583)
.+.+++.|+|.-|+|||.+++....... + +.++-+.+. ...+...+...++..+...+.. ....+...+.|..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 3456999999999999999995443211 1 111213333 3446677788888888763221 1122333333333
Q ss_pred Hh-cCCc-eeEEEcCCCcccccchHhhHHhhccCCCC---ceEEEecCch-------HHHhhhc-CCCe-EEcCCCChHH
Q 036323 283 NI-AGQK-FFMVLDNLWTDDYRKWEPFRNCLMNGLRG---SKILITTRKE-------TVARMME-STDI-VYVQGLSELE 348 (583)
Q Consensus 283 ~l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~IlvTtR~~-------~v~~~~~-~~~~-~~l~~L~~~e 348 (583)
.. ++++ ..+++|+.+....+..+.++........+ -+|+..-..+ .+..... .... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 4666 89999999776666666655433221111 2233332211 0111111 1334 8999999999
Q ss_pred HHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhh
Q 036323 349 CWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGS 392 (583)
Q Consensus 349 a~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 392 (583)
...++.....+...+ .+-.-.+....|.....|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999988876544322 2112245567799999999999988764
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.94 E-value=0.00011 Score=82.20 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=85.2
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc---ccccC-ceEEEEEeCCCCChHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND---VINNF-EIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~ 255 (583)
..++||+.++.++++.|.... ..-+.++|++|+|||++|+.+++... +...+ ++.+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~-------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~-- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR-------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG-- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC-------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH--
Confidence 468999999999999996532 23446899999999999999886321 11111 3334321 111
Q ss_pred HHHHHHHhhcCccccccHHHHHHHHHHHh-cCCceeEEEcCCCcc--------cccchHhhHHhhccCCCCceEEEecCc
Q 036323 256 AKATIEELEGSAIDLHELNSLLRRIGANI-AGQKFFMVLDNLWTD--------DYRKWEPFRNCLMNGLRGSKILITTRK 326 (583)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~IlvTtR~ 326 (583)
.++ .+. .-..+.+.....+.+.+ +.++.+|+||+++.- ...+...+..++... ...++|-+|..
T Consensus 252 --~ll---aG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 252 --SLL---AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred --HHh---ccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 111 111 01112222222222222 346789999999531 011222222222221 23445555544
Q ss_pred hHHHhh-------hcCCCeEEcCCCChHHHHHHHHHH
Q 036323 327 ETVARM-------MESTDIVYVQGLSELECWSLFRRF 356 (583)
Q Consensus 327 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 356 (583)
...... ......+.+++++.++..+++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 332111 122568999999999999999864
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.93 E-value=2.9e-05 Score=67.70 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 036323 211 ISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~ 231 (583)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999985
No 112
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.93 E-value=0.00013 Score=83.69 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=82.7
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccc---c-CceEEE-EEeCCCCChHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVIN---N-FEIRVR-VCVSDPFDEFN 254 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~~~w-v~~~~~~~~~~ 254 (583)
..++||+.++.+++..|.... ..-+.++|++|+|||++|+.+........ . ....+| ++++ .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~-------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT-------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------A 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------H
Confidence 468999999999999996543 33455899999999999998877421110 0 112222 2211 1
Q ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHHh-c-CCceeEEEcCCCccc-----ccchHhhHHhh-ccCCCC-ceEEEecC
Q 036323 255 VAKATIEELEGSAIDLHELNSLLRRIGANI-A-GQKFFMVLDNLWTDD-----YRKWEPFRNCL-MNGLRG-SKILITTR 325 (583)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~-----~~~~~~l~~~l-~~~~~g-s~IlvTtR 325 (583)
++ .+. .-..+.+..+..+.+.+ . +++.+|++|+++.-. .... .....| +....| .++|.+|.
T Consensus 240 ----l~---a~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~-d~~~~Lk~~l~~g~i~~IgaTt 310 (852)
T TIGR03346 240 ----LI---AGA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM-DAGNMLKPALARGELHCIGATT 310 (852)
T ss_pred ----Hh---hcc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh-HHHHHhchhhhcCceEEEEeCc
Confidence 11 000 00112222222222222 2 468999999996421 0011 111112 112223 34555554
Q ss_pred chHHHh-------hhcCCCeEEcCCCChHHHHHHHHHH
Q 036323 326 KETVAR-------MMESTDIVYVQGLSELECWSLFRRF 356 (583)
Q Consensus 326 ~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~ 356 (583)
...... .......+.+...+.++...++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 443211 1122567889999999999988765
No 113
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.85 E-value=0.0002 Score=82.03 Aligned_cols=45 Identities=29% Similarity=0.388 Sum_probs=37.5
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++||+.++.+++..|.... ..-+.++|++|+|||+||+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~-------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT-------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC-------cCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999996543 335569999999999999988774
No 114
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.75 E-value=0.00018 Score=63.02 Aligned_cols=87 Identities=21% Similarity=0.058 Sum_probs=44.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC-
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ- 287 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k- 287 (583)
..+.|+|++|+||||+++.++..... ....++++..+........... ...................+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 57889999999999999999885322 2223455544433222211111 011111111111222222333333333
Q ss_pred ceeEEEcCCCcc
Q 036323 288 KFFMVLDNLWTD 299 (583)
Q Consensus 288 ~~LlVlDdv~~~ 299 (583)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999654
No 115
>PRK08116 hypothetical protein; Validated
Probab=97.75 E-value=0.00014 Score=71.80 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=58.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQK 288 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 288 (583)
..+.|+|.+|+|||.||..+++.. ......++++++ .+++..+........ ..+...+. +.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~~~----~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENEII----RSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHHHH----HHhcCCC
Confidence 357899999999999999999853 222334555553 334444444433211 11222222 2233333
Q ss_pred eeEEEcCCCcccccchHh--hHHhhcc-CCCCceEEEecCc
Q 036323 289 FFMVLDNLWTDDYRKWEP--FRNCLMN-GLRGSKILITTRK 326 (583)
Q Consensus 289 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~IlvTtR~ 326 (583)
||||||+.......|.. +...+.. -..+..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995544445543 4333332 2345679999874
No 116
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00095 Score=67.08 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=66.4
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-HHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCC
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-TVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTP 363 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (583)
++.=++|+|+++..+....+.|...|..-..++.+|++|.+. .+...+ +....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--
Confidence 445589999998777777888888887766677777666654 344333 336789999999999998886532 1
Q ss_pred CCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 364 SECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 364 ~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
. ....+++.++|.|+....+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 1 1245789999999976544
No 117
>PRK10536 hypothetical protein; Provisional
Probab=97.72 E-value=0.00072 Score=65.05 Aligned_cols=137 Identities=16% Similarity=0.154 Sum_probs=74.8
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEE----eCC-----
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVC----VSD----- 248 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~----- 248 (583)
+...+.+|......+..+|.. ..++.+.|++|+|||+||..+..+.-..+.|..++-.. ..+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~---------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfL 123 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES---------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFL 123 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc---------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcC
Confidence 345577888889999988843 23999999999999999988776422233454333221 111
Q ss_pred CCChHH----HHHHHHHHhhcCccccccHHHHHH--------HHHHHhcCCce---eEEEcCCCcccccchHhhHHhhcc
Q 036323 249 PFDEFN----VAKATIEELEGSAIDLHELNSLLR--------RIGANIAGQKF---FMVLDNLWTDDYRKWEPFRNCLMN 313 (583)
Q Consensus 249 ~~~~~~----~~~~il~~l~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~ 313 (583)
+-+..+ .+.-+...|..-. .....+.+.. .=..+++++.+ +||+|.+.+.+. ..+...+..
T Consensus 124 PG~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR 199 (262)
T PRK10536 124 PGDIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTR 199 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhh
Confidence 011111 1222222221100 0011111110 00124566655 999999976554 334444555
Q ss_pred CCCCceEEEecCch
Q 036323 314 GLRGSKILITTRKE 327 (583)
Q Consensus 314 ~~~gs~IlvTtR~~ 327 (583)
.+.+|++|+|--..
T Consensus 200 ~g~~sk~v~~GD~~ 213 (262)
T PRK10536 200 LGENVTVIVNGDIT 213 (262)
T ss_pred cCCCCEEEEeCChh
Confidence 66899999987543
No 118
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.0006 Score=70.10 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=82.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAG 286 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (583)
....+.|+|..|.|||.|++.+.+. ...+......+.++ .......+...+... -....++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 5778999999999999999999984 33344322222222 233444444443321 223344443
Q ss_pred CceeEEEcCCCccc-ccchH-hhHHhhcc-CCCCceEEEecCch---------HHHhhhcCCCeEEcCCCChHHHHHHHH
Q 036323 287 QKFFMVLDNLWTDD-YRKWE-PFRNCLMN-GLRGSKILITTRKE---------TVARMMESTDIVYVQGLSELECWSLFR 354 (583)
Q Consensus 287 k~~LlVlDdv~~~~-~~~~~-~l~~~l~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 354 (583)
.-=++++||++--. .+.|. .+...+.. ...|..||+|++.. .+...+...-.+++.+++.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 33489999996421 11222 24444432 22344899998642 333445567889999999999999999
Q ss_pred HHhccC
Q 036323 355 RFALSG 360 (583)
Q Consensus 355 ~~a~~~ 360 (583)
+.+...
T Consensus 255 kka~~~ 260 (408)
T COG0593 255 KKAEDR 260 (408)
T ss_pred HHHHhc
Confidence 876433
No 119
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0011 Score=66.80 Aligned_cols=96 Identities=9% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hHHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCC
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ETVARMME-STDIVYVQGLSELECWSLFRRFALSGRTP 363 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (583)
+++-++|||+++..+...-+.|...|..-..++.+|++|.+ ..+...+. ....+.+.+++.+++...+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45669999999776666667788878666667767766664 33433332 36788999999999988887531
Q ss_pred CCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 364 SECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 364 ~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
.. ...+..++..++|.|+....+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2225568999999998665443
No 120
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=0.00029 Score=77.01 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=41.5
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....+++|-++.++++..++.... ......+++.|+|++|+||||+++.++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~--~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQV--LENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcc--cccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999986543 11223468999999999999999999874
No 121
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.66 E-value=0.00062 Score=61.79 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=76.6
Q ss_pred echhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc------------------ccCceEEEEE
Q 036323 184 GRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI------------------NNFEIRVRVC 245 (583)
Q Consensus 184 GR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~ 245 (583)
|-++..+.|.+.+... .-...+.++|+.|+||+++|..+.+..--. ....-..|+.
T Consensus 1 gq~~~~~~L~~~~~~~------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCT------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHcC------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe
Confidence 5566777788777543 245578999999999999998876531110 1111222332
Q ss_pred eCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh-----cCCceeEEEcCCCcccccchHhhHHhhccCCCCceE
Q 036323 246 VSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI-----AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKI 320 (583)
Q Consensus 246 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 320 (583)
-.... ..-..+++. .+.+.+ .++.=++||||++..+......|+..+.....++.+
T Consensus 75 ~~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 75 PDKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred ccccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 22110 011222222 222222 234569999999887777888899888877788888
Q ss_pred EEecCchH-HHhhh-cCCCeEEcCCCC
Q 036323 321 LITTRKET-VARMM-ESTDIVYVQGLS 345 (583)
Q Consensus 321 lvTtR~~~-v~~~~-~~~~~~~l~~L~ 345 (583)
|++|.+.. +.... .....+.+.+|+
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEECChHHChHHHHhhceEEecCCCC
Confidence 88888754 33322 235566666654
No 122
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0015 Score=65.80 Aligned_cols=177 Identities=9% Similarity=0.040 Sum_probs=99.5
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhh----
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELE---- 264 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~---- 264 (583)
-+.|.+.+..+ .-.....++|+.|+||+++|..+.+..--..... ...+..-...+.+...-.
T Consensus 11 ~~~l~~~~~~~------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~ 77 (325)
T PRK06871 11 YQQITQAFQQG------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFH 77 (325)
T ss_pred HHHHHHHHHcC------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEE
Confidence 45566666432 2356788999999999999988755211000000 000011111111111000
Q ss_pred ------cCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-HHHhhh-cC
Q 036323 265 ------GSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-TVARMM-ES 335 (583)
Q Consensus 265 ------~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~-~~ 335 (583)
+.......+.++.+.+... ..+++=++|+|+++..+....+.|+..|.....++.+|++|.+. .+...+ +.
T Consensus 78 ~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 78 ILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 0001112222222222211 13556688999998777777888888887766777777777654 343332 23
Q ss_pred CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 336 TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 336 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
...+.+.+++.++..+.+..... .. ...+...++.++|.|+.+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~-----~~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS-----AE----ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc-----cC----hHHHHHHHHHcCCCHHHH
Confidence 67899999999999988887541 11 112455788999999633
No 123
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.65 E-value=0.00042 Score=73.85 Aligned_cols=170 Identities=11% Similarity=0.164 Sum_probs=91.5
Q ss_pred cCCceeechhHHHHHHHHhhcCCC------CCCCCceEEEEEEecCCchHHHHHHHHHcCcccc---ccCceEEEEEeCC
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGS------DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI---NNFEIRVRVCVSD 248 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~ 248 (583)
.-..+.|.+..+++|.+.+..+-. ..+-..++-+.++|++|+|||++|+.+++..... .......|+++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 345678899999999887642110 0011234568899999999999999999853211 0112334444432
Q ss_pred CCChHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCccc-------ccch-----HhhHHhhcc--
Q 036323 249 PFDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDD-------YRKW-----EPFRNCLMN-- 313 (583)
Q Consensus 249 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~-- 313 (583)
. ++ +....+. ....+..+....++. ..+++++|+||+++.-- .... ..+...+..
T Consensus 260 ~----eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 11 1100000 011122222333322 23578999999996311 0111 223333322
Q ss_pred CCCCceEEEecCchHHHh-hh-c---CCCeEEcCCCChHHHHHHHHHHh
Q 036323 314 GLRGSKILITTRKETVAR-MM-E---STDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 314 ~~~gs~IlvTtR~~~v~~-~~-~---~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
...+..||.||....... .+ . -...++++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 123445666665543321 11 1 14568999999999999999876
No 124
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00083 Score=68.47 Aligned_cols=163 Identities=8% Similarity=0.035 Sum_probs=90.0
Q ss_pred ceee-chhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 181 EVRG-RDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 181 ~~vG-R~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
.++| -+.-++.|...+... .-.+...++|+.|+|||++|..+.+..--....... ........+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~ 72 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRI 72 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHH
Confidence 3456 666777788777543 345677999999999999998875531100000000 00000111111
Q ss_pred HHHhhcC------ccccccHHHHHHHHHHH----hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-H
Q 036323 260 IEELEGS------AIDLHELNSLLRRIGAN----IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-T 328 (583)
Q Consensus 260 l~~l~~~------~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~ 328 (583)
...-... ......++++.+.+... ..+.+-++|+|++...+....+.|+..+.....++.+|++|.+. .
T Consensus 73 ~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 73 DSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 0000000 00011122222222111 23455689999997666666777888887666677777777653 3
Q ss_pred HHhhh-cCCCeEEcCCCChHHHHHHHHHH
Q 036323 329 VARMM-ESTDIVYVQGLSELECWSLFRRF 356 (583)
Q Consensus 329 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 356 (583)
+...+ .....+++.+++.++....+...
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 33322 23678999999999998887653
No 125
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.61 E-value=0.00071 Score=76.64 Aligned_cols=136 Identities=15% Similarity=0.200 Sum_probs=76.5
Q ss_pred CceeechhHHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.+..++.|.+.+...... .......++.++|++|+|||+||+.++... +...+.++.+.......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc---
Confidence 46889999999988887643210 012234578999999999999999998732 22345555544222111
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcCCc-eeEEEcCCCcccccchHhhHHhhccC-----------CCCceEEEecC
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAGQK-FFMVLDNLWTDDYRKWEPFRNCLMNG-----------LRGSKILITTR 325 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTtR 325 (583)
...+.+.++.....+. ...+.+.++.++ -+|+||+++...++.++.|...+..+ -.++.||+||.
T Consensus 526 --~~~lig~~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn 602 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSN 602 (731)
T ss_pred --HHHHhcCCCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCC
Confidence 1112222211111000 112223333344 59999999877766677777666432 12355777775
Q ss_pred c
Q 036323 326 K 326 (583)
Q Consensus 326 ~ 326 (583)
.
T Consensus 603 ~ 603 (731)
T TIGR02639 603 A 603 (731)
T ss_pred c
Confidence 3
No 126
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.60 E-value=0.00046 Score=72.40 Aligned_cols=159 Identities=13% Similarity=0.135 Sum_probs=87.1
Q ss_pred CceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
..+.|.+..+++|.+.+.-+-.. .+-...+-+.|+|++|+|||+||+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 46789999999988877422100 01123456889999999999999999984 33333 222111
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc--------c--cc-hHhhHHhh---cc--CCCC
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD--------Y--RK-WEPFRNCL---MN--GLRG 317 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--~~-~~~l~~~l---~~--~~~g 317 (583)
.+. ....+. ....+...+.....+.+.+|+||+++.-. . .. ...+...+ .. ...+
T Consensus 252 eL~----~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELI----QKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhh----hhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 111000 00111112222234578899999974210 0 00 11122222 11 2335
Q ss_pred ceEEEecCchHHHhh-h-c---CCCeEEcCCCChHHHHHHHHHHhc
Q 036323 318 SKILITTRKETVARM-M-E---STDIVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 318 s~IlvTtR~~~v~~~-~-~---~~~~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
..||+||........ + . ....+++.+.+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543322 1 1 145788999999999999987753
No 127
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.59 E-value=0.001 Score=69.22 Aligned_cols=161 Identities=12% Similarity=0.138 Sum_probs=87.4
Q ss_pred ccCCceeechhHHHHHHHHhhcCCC------CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGS------DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
+.-.++.|-+..+++|.+.+..+-. ..+-..++-+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f-----i~i~~-- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF-----IRVVG-- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh--
Confidence 3445788999988888876642110 0011345678899999999999999999842 2222 12211
Q ss_pred ChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc------c----cc----hHhhHHhhcc--C
Q 036323 251 DEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD------Y----RK----WEPFRNCLMN--G 314 (583)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~----~~----~~~l~~~l~~--~ 314 (583)
..+ .....+. ....+...+.......+.+|+||+++.-. . .. +..+...+.. .
T Consensus 213 --s~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 --SEF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred --HHH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111 1111110 01111222222334678999999985310 0 01 1122222221 2
Q ss_pred CCCceEEEecCchHHHh-h-hc---CCCeEEcCCCChHHHHHHHHHHh
Q 036323 315 LRGSKILITTRKETVAR-M-ME---STDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 315 ~~gs~IlvTtR~~~v~~-~-~~---~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
..+..||+||....... . +. -...++++..+.++..++|....
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 24567888887544322 1 11 24568898888888888888665
No 128
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.59 E-value=0.00075 Score=77.38 Aligned_cols=139 Identities=16% Similarity=0.253 Sum_probs=76.6
Q ss_pred CceeechhHHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.+.-++.+...+...... ..+....++.++|++|+|||+||+.+++.. ...-...+.++++.... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-----~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-----K 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-----h
Confidence 46899999999988888643200 011223578899999999999999988632 11112234444443211 1
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcCC-ceeEEEcCCCcccccchHhhHHhhccC-----------CCCceEEEecC
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAGQ-KFFMVLDNLWTDDYRKWEPFRNCLMNG-----------LRGSKILITTR 325 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTtR 325 (583)
.....+.+.++.....+. ...+.+.++.+ .-+|+||++...+...+..|...+..+ ..++.||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112223332222111110 01122223223 359999999776666777777766432 12344778887
Q ss_pred c
Q 036323 326 K 326 (583)
Q Consensus 326 ~ 326 (583)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 129
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.59 E-value=0.0025 Score=72.12 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=90.3
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
...+|.++-+++|.++|..... .......++.++|++|+||||+++.++.. ....| +-+..+...+...+...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-VNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-cccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 4689999999999988864220 01124558999999999999999999873 22222 123333322322211110
Q ss_pred HHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccc----hHhhHHhhccC---------------CCCceE
Q 036323 260 IEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRK----WEPFRNCLMNG---------------LRGSKI 320 (583)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~I 320 (583)
....+. ....+.+.+... ...+-+|+||.++...... ...+...+.+. ..+..+
T Consensus 396 -~~~~g~-----~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYIGS-----MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccCCC-----CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 000000 111233333332 2234478899996533221 23444444321 134445
Q ss_pred EEecCchHHHhh-hcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 321 LITTRKETVARM-MESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 321 lvTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
|.|+....+... ......+++.+++.++-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 556654433222 2235688999999999888877765
No 130
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.57 E-value=0.00086 Score=77.17 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=78.8
Q ss_pred CceeechhHHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.+..++.+...+...... .......++.++|++|+|||++|+.+... ....-...+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 46899999999999988653210 01123467889999999999999998873 111112334445443322111
Q ss_pred HHHHHhhcCccccc---cHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccC-----------CCCceEEEe
Q 036323 258 ATIEELEGSAIDLH---ELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG-----------LRGSKILIT 323 (583)
Q Consensus 258 ~il~~l~~~~~~~~---~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvT 323 (583)
...+.+.++... ....+...++. ....+|+||++....+..+..|...+..+ ..++.||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 122222222211 11222222221 22349999999877777788777777443 134558888
Q ss_pred cCc
Q 036323 324 TRK 326 (583)
Q Consensus 324 tR~ 326 (583)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 874
No 131
>PRK12377 putative replication protein; Provisional
Probab=97.57 E-value=0.00022 Score=69.12 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=56.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.|+|.+|+|||+||..+++.. ......++++++. +++..+-..... .......... + .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~l~~----l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKFLQE----L-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHHHHH----h-cC
Confidence 3578899999999999999999853 2333334555543 344443333211 1111222222 2 35
Q ss_pred ceeEEEcCCCcccccchHh--hHHhhcc-CCCCceEEEecCc
Q 036323 288 KFFMVLDNLWTDDYRKWEP--FRNCLMN-GLRGSKILITTRK 326 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~IlvTtR~ 326 (583)
.-||||||+.......|.. |...+.. -.+...+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999995544445543 3333332 1223447888763
No 132
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.57 E-value=0.0023 Score=63.05 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=27.6
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHH
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (583)
.|.|.|++|+|||+||+.+.+. ... ..+.+++....+..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHH
Confidence 5669999999999999999862 211 2345555555444444
No 133
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.56 E-value=0.0022 Score=65.73 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=118.5
Q ss_pred chhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHH-HHHHcCccccccCceEEEEEeCCC---CChHHHHHHHH
Q 036323 185 RDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLA-QLAYNDNDVINNFEIRVRVCVSDP---FDEFNVAKATI 260 (583)
Q Consensus 185 R~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il 260 (583)
|.+.+++|..||.+.. -..|.|.|+-|+||+.|+ .++..+.+. ++.+++.+- .+...+...+.
T Consensus 1 R~e~~~~L~~wL~e~~-------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP-------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred CchHHHHHHHHHhcCC-------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHH
Confidence 6678899999997654 468999999999999999 888775322 455554321 12223333333
Q ss_pred HHhh-----------------------cCccc-cccHHH--------HHHHHHH-------------------Hhc---C
Q 036323 261 EELE-----------------------GSAID-LHELNS--------LLRRIGA-------------------NIA---G 286 (583)
Q Consensus 261 ~~l~-----------------------~~~~~-~~~~~~--------~~~~l~~-------------------~l~---~ 286 (583)
.+++ +.... ..+.+. ....|++ +|+ .
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 3322 11111 111111 1111111 011 1
Q ss_pred CceeEEEcCCCccccc---chHhhHH---hhccCCCCceEEEecCchHHHh----hhc--CCCeEEcCCCChHHHHHHHH
Q 036323 287 QKFFMVLDNLWTDDYR---KWEPFRN---CLMNGLRGSKILITTRKETVAR----MME--STDIVYVQGLSELECWSLFR 354 (583)
Q Consensus 287 k~~LlVlDdv~~~~~~---~~~~l~~---~l~~~~~gs~IlvTtR~~~v~~----~~~--~~~~~~l~~L~~~ea~~Lf~ 354 (583)
++=+|||||.-..... .|+.|.. .|.. .+=.+||++|-+..... .+. ..+.+.|...+++.|..+..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 2568999998442111 1222221 1222 23456787776654333 332 26788899999999999999
Q ss_pred HHhccCCCC------------CCC----chHHHHHHHHhhhCCCCccchhhhhhhhccCCCHHH
Q 036323 355 RFALSGRTP------------SEC----DQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEE 402 (583)
Q Consensus 355 ~~a~~~~~~------------~~~----~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~ 402 (583)
.+....... ... .....-....+..+||--.-|..+++.++...++++
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 887433110 000 123344566889999999999999999998876653
No 134
>CHL00176 ftsH cell division protein; Validated
Probab=97.55 E-value=0.0012 Score=72.85 Aligned_cols=179 Identities=14% Similarity=0.145 Sum_probs=94.5
Q ss_pred CCceeechhHHHHHHHH---hhcCCC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 179 VSEVRGRDEEMRSIKSM---LLCQGS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~---L~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
-.++.|.++..+++.+. |..+.. .-+....+-+.++|++|+|||+||+.+++... .-|+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~-------~p~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE-------VPFFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CCeeeccHH----
Confidence 34678877666555544 332210 00112345688999999999999999987421 122333211
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc----------ccchHh-hHHhh---cc--CCCC
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRKWEP-FRNCL---MN--GLRG 317 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~-l~~~l---~~--~~~g 317 (583)
++. ....+. ....+...+.......+++|+||+++.-. ...+.. +...+ .. ...+
T Consensus 251 ~f~----~~~~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFVGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhhhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 111000 11122233344446788999999995321 111222 22222 11 2345
Q ss_pred ceEEEecCchHHHh-hh-c---CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCC
Q 036323 318 SKILITTRKETVAR-MM-E---STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKG 382 (583)
Q Consensus 318 s~IlvTtR~~~v~~-~~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G 382 (583)
..||.||....... .+ . -...+.+...+.++-.++++.++.... ..+ ......|++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSP--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cch--hHHHHHHHhcCCC
Confidence 56676776543322 11 1 246788999999999999988764311 111 2234567788777
No 135
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.55 E-value=0.0017 Score=70.34 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=104.2
Q ss_pred ccCCceeechhHHHHHHHHhh---cCCC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLL---CQGS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD 251 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~---~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 251 (583)
+.-.+++|-+..++++.+.+. .+.. ..+....+-+.++|++|+|||+||+.+++... .. ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccH---
Confidence 334578898877666655443 1100 00112345588999999999999999987421 12 222221
Q ss_pred hHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc----------ccchHh----hHHhhc--cCC
Q 036323 252 EFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRKWEP----FRNCLM--NGL 315 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~ 315 (583)
.++ .....+. ....+...+.......+.+|+||+++.-. ...+.. +...+. ...
T Consensus 122 -~~~----~~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDF----VEMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHH----HHHHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111 1111110 11122223333334678999999994311 011222 222221 122
Q ss_pred CCceEEEecCchHHH-hhh----cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC-ccchhh
Q 036323 316 RGSKILITTRKETVA-RMM----ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL-PLAAKT 389 (583)
Q Consensus 316 ~gs~IlvTtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~ 389 (583)
.+..||.||...... ..+ .-...+++...+.++-.++|..+...... ..... ...|++.+.|. +-.|..
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFSGADLAN 266 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCCHHHHHH
Confidence 345566667654321 111 12467889988888888888877632211 11111 34677777763 333433
Q ss_pred hhh---h--hccC---CCHHHHHHHHhhh
Q 036323 390 IGS---L--LQFK---RTKEEWQSALDSE 410 (583)
Q Consensus 390 ~~~---~--L~~~---~~~~~w~~~l~~~ 410 (583)
+.. . .+.+ -+.+.....++..
T Consensus 267 l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 267 LLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 322 1 1111 1556666666554
No 136
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00026 Score=78.00 Aligned_cols=138 Identities=17% Similarity=0.298 Sum_probs=84.3
Q ss_pred CceeechhHHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.+.-+..+.+.+.....+ .......+....|+.|||||.||+.++.. .-+.=+..+-++.|.... +
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~E-----k 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYME-----K 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHH-----H
Confidence 57899999999999988644321 12345668888999999999999888762 111013344444443221 1
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcCCce-eEEEcCCCcccccchHhhHHhhccC----C-------CCceEEEecC
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAGQKF-FMVLDNLWTDDYRKWEPFRNCLMNG----L-------RGSKILITTR 325 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~IlvTtR 325 (583)
--.+.|-+.++.--..++ -..|-+..+.++| +|.||.+....++.++.|...|..+ + .++-||+||.
T Consensus 564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 223344444443222221 2234445567887 8889999877777777777776543 2 2456777776
No 137
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.51 E-value=0.014 Score=66.60 Aligned_cols=165 Identities=15% Similarity=0.179 Sum_probs=84.8
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
..++|.++-+++|.+++..... .......++.++|++|+|||++|+.+++. ....|- -++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~-~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKL-RGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHh-hcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcC--
Confidence 3578999999998887643210 01123458999999999999999999884 222331 122232222221110
Q ss_pred HHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccc----hHhhHHhhcc--------C-------CCCceE
Q 036323 260 IEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRK----WEPFRNCLMN--------G-------LRGSKI 320 (583)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~--------~-------~~gs~I 320 (583)
. ...-.......+.+.+.... .++-+|+||.++...... ...|...+.. . ..+..+
T Consensus 392 --~--~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 392 --H--RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred --C--CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0 00000011122333333332 233478999985532211 1223332221 0 123344
Q ss_pred EEecCchH-HHhh-hcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 321 LITTRKET-VARM-MESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 321 lvTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
|.||.... +... ......+++.+++.++-.+++..+.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55555432 1111 2235688999999998888877653
No 138
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0027 Score=64.65 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=65.5
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-HHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCC
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-TVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTP 363 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (583)
+++=++|+|+++..+...-+.|+..|..-..++.+|++|.+. .+...+ +....+.+.+++.+++...+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~--~--- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV--T--- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc--C---
Confidence 566699999997777667778888887766677777666654 344332 335678999999999988876532 1
Q ss_pred CCCchHHHHHHHHhhhCCCCccchh
Q 036323 364 SECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 364 ~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
.. .+.+..+++.++|.|....
T Consensus 182 ~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CC----HHHHHHHHHHcCCCHHHHH
Confidence 11 2235678999999996443
No 139
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.00025 Score=75.10 Aligned_cols=189 Identities=14% Similarity=0.180 Sum_probs=114.5
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
++++|.+.-...|...+.... -.......|+-|+||||+|+-++.-..-.. | ....++..-...+.|
T Consensus 16 ~evvGQe~v~~~L~nal~~~r------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR------IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEI 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc------chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhh
Confidence 467999999999999996543 345567899999999999988765211110 0 111122222222222
Q ss_pred HHHh--------hcCccccccHHHHHHHHHHHh-cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hHH
Q 036323 260 IEEL--------EGSAIDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ETV 329 (583)
Q Consensus 260 l~~l--------~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v 329 (583)
-..- ..+.....++.++.+.+.-.- .++.=+.|+|.|+-.....|+.|+..|.....+...|+.|.+ ..+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 2210 001112223333333322211 244458999999877777899988888766666666665554 444
Q ss_pred Hh-hhcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc
Q 036323 330 AR-MMESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL 385 (583)
Q Consensus 330 ~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL 385 (583)
.. .+.....|.+..++.++-...+...+.......+ .+....|++...|...
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 33 2344788999999999999988888755444333 4455667777777554
No 140
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.45 E-value=0.0054 Score=62.59 Aligned_cols=168 Identities=10% Similarity=0.110 Sum_probs=94.2
Q ss_pred chhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc--ccC---ceEEEEEeCCCCChHHHHHHH
Q 036323 185 RDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI--NNF---EIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 185 R~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f---~~~~wv~~~~~~~~~~~~~~i 259 (583)
|+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+.+..... ..+ ..-.|...........++..|
T Consensus 1 ~~~~a~~la~~I~~~~----~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l 76 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD----SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEEL 76 (325)
T ss_pred ChHHHHHHHHHHhccC----CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHH
Confidence 3445677777776542 2568899999999999999999987743332 112 122333333222233444444
Q ss_pred HHHhhcCcc------------------------------------------------------------------ccccH
Q 036323 260 IEELEGSAI------------------------------------------------------------------DLHEL 273 (583)
Q Consensus 260 l~~l~~~~~------------------------------------------------------------------~~~~~ 273 (583)
..++..... ...+.
T Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (325)
T PF07693_consen 77 FDQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEV 156 (325)
T ss_pred HHHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHH
Confidence 443322100 00011
Q ss_pred HHHHHHHHHHhc--CCceeEEEcCCCcccccchHhhHHhhcc--CCCCceEEEecCchHHHhhhcC--------------
Q 036323 274 NSLLRRIGANIA--GQKFFMVLDNLWTDDYRKWEPFRNCLMN--GLRGSKILITTRKETVARMMES-------------- 335 (583)
Q Consensus 274 ~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~~~~-------------- 335 (583)
+.....+.+.+. ++|.++|+||++..+++....+...+.. ..++..+|+..-...+...+..
T Consensus 157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 113334444443 5789999999987666655554444432 3367777776655544432211
Q ss_pred -----CCeEEcCCCChHHHHHHHHHH
Q 036323 336 -----TDIVYVQGLSELECWSLFRRF 356 (583)
Q Consensus 336 -----~~~~~l~~L~~~ea~~Lf~~~ 356 (583)
..++.+++++..+-..+|...
T Consensus 237 LeKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 237 LEKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HHhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 245777888877766666555
No 141
>PRK08181 transposase; Validated
Probab=97.44 E-value=0.00038 Score=68.31 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=54.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQK 288 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 288 (583)
.-+.|+|++|+|||.||..+.+.. ......++|+++ .+++..+..... ..........+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcC
Confidence 358899999999999999988742 222223445443 344444432211 11222222222 234
Q ss_pred eeEEEcCCCcccccchH--hhHHhhccCCCCceEEEecCch
Q 036323 289 FFMVLDNLWTDDYRKWE--PFRNCLMNGLRGSKILITTRKE 327 (583)
Q Consensus 289 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~IlvTtR~~ 327 (583)
=||||||+.......+. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999544333332 2444443221123588888743
No 142
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.41 E-value=0.0024 Score=66.81 Aligned_cols=118 Identities=22% Similarity=0.215 Sum_probs=72.6
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCce
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKF 289 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 289 (583)
++.|.|+-++|||||++.+... ..+. .+++..-+......-+. +....+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~-----------------d~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELL-----------------DLLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHH-----------------HHHHHHHHhhccCCc
Confidence 9999999999999999777663 1111 44444322111111111 111111111122778
Q ss_pred eEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHHh-----hh-cCCCeEEcCCCChHHHHHH
Q 036323 290 FMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVAR-----MM-ESTDIVYVQGLSELECWSL 352 (583)
Q Consensus 290 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~-----~~-~~~~~~~l~~L~~~ea~~L 352 (583)
+|+||.|.. ...|......+.+..+. +|++|+-+..... .+ +....+++.||+..|-..+
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 999999954 46899877777776555 7888877654432 22 2367889999999887654
No 143
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.41 E-value=0.0025 Score=59.79 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=74.7
Q ss_pred cccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHH
Q 036323 176 LIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 176 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (583)
.++-..++|-|...+.|++....-. .+....-|.+||.-|+|||+|++.+.+. +....-. -|.|..
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~---~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k------- 121 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFA---EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDK------- 121 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHH---cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcH-------
Confidence 3445678999999998887654322 1233456789999999999999999883 3333322 122221
Q ss_pred HHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCC-cccccchHhhHHhhccC---CCCceEEEecCc
Q 036323 256 AKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLW-TDDYRKWEPFRNCLMNG---LRGSKILITTRK 326 (583)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~---~~gs~IlvTtR~ 326 (583)
.+..++..+...|+. ..+||+|..||+- +.+...+..+...|..+ .+...++..|.+
T Consensus 122 ------------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 ------------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ------------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 122233334444443 4689999999983 33445677788777542 333344444443
No 144
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0046 Score=61.45 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=97.4
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
.....+=|-++.+++|.+...-+-.. -+-..++=|.++|++|.|||-||++|+++ ....| +.+...
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH-
Confidence 34456678999999998876432200 01245677889999999999999999994 43334 333221
Q ss_pred ChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc-CCceeEEEcCCCc-----------ccccchHhhH---Hhhcc--
Q 036323 251 DEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA-GQKFFMVLDNLWT-----------DDYRKWEPFR---NCLMN-- 313 (583)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~-----------~~~~~~~~l~---~~l~~-- 313 (583)
++.+..-+.. ..+.+.+.+..+ ..+.+|++|.++. .+.+....+. ..+..
T Consensus 220 -------ElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 -------ELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred -------HHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 1222111111 224444444433 4689999999843 1111122222 33322
Q ss_pred CCCCceEEEecCchHHHhh--hcC---CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCc
Q 036323 314 GLRGSKILITTRKETVARM--MES---TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLP 384 (583)
Q Consensus 314 ~~~gs~IlvTtR~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 384 (583)
...+.+||..|...+.... +.+ ...++++.-+.+.-.++|+-+.-.-. ....-+++ .|++.|.|.-
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e----~la~~~~g~s 357 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLE----LLARLTEGFS 357 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHH----HHHHhcCCCc
Confidence 2345788988876544321 122 56778774444445566665542211 12222333 3666666643
No 145
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.40 E-value=0.00053 Score=71.86 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=82.4
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH-
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT- 259 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i- 259 (583)
.++||++.++.+...+.... -|.|.|++|+|||+||+.+.........|... -+..+ ...+++..+
T Consensus 21 ~i~gre~vI~lll~aalag~---------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l~ 87 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPLS 87 (498)
T ss_pred hccCcHHHHHHHHHHHccCC---------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcHH
Confidence 47999999999999887554 67899999999999999998732222233211 01111 111221111
Q ss_pred HHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC---------CCceEEEecCchHHH
Q 036323 260 IEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL---------RGSKILITTRKETVA 330 (583)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~IlvTtR~~~v~ 330 (583)
+..... ... ........+. ..-+|++|+++.........|...+.... -..++++++.++-..
T Consensus 88 i~~~~~----~g~---f~r~~~G~L~-~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE 159 (498)
T PRK13531 88 IQALKD----EGR---YQRLTSGYLP-EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPE 159 (498)
T ss_pred Hhhhhh----cCc---hhhhcCCccc-cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcc
Confidence 111000 000 0000101111 12289999998877767777776663211 123455554443211
Q ss_pred ------hhhcC-CCeEEcCCCChHHH-HHHHHHH
Q 036323 331 ------RMMES-TDIVYVQGLSELEC-WSLFRRF 356 (583)
Q Consensus 331 ------~~~~~-~~~~~l~~L~~~ea-~~Lf~~~ 356 (583)
..+.. .-.+.+++++.++. .+++...
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11111 33577899985444 7777653
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.37 E-value=0.00055 Score=78.27 Aligned_cols=137 Identities=19% Similarity=0.250 Sum_probs=77.1
Q ss_pred CceeechhHHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.+.-++.+.+.+...... .......++.++|++|+|||.||+.+... .-+.....+-++++.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh-----
Confidence 57899999999999988543210 12234558899999999999999887663 1111122222333321111
Q ss_pred HHHHHhhcCcccc---ccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEe
Q 036323 258 ATIEELEGSAIDL---HELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILIT 323 (583)
Q Consensus 258 ~il~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvT 323 (583)
.-...+.+.++.- .....+...++ +...-+|+||++...++..++.|...+..+. .++.||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 0111222222211 11112333333 2345699999997776666777776665442 45667777
Q ss_pred cCc
Q 036323 324 TRK 326 (583)
Q Consensus 324 tR~ 326 (583)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 147
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.36 E-value=0.0011 Score=64.08 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=56.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.++|.+|+|||+||..+++... ..-..+++++ ..+++..+-..... .....+.+.. .+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~~l~----~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQLLN----DLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHHHHH----Hhc-c
Confidence 35788999999999999999988532 2223445553 33344443333211 1112222222 233 3
Q ss_pred ceeEEEcCCCcccccchHh--hHHhhcc-CCCCceEEEecCc
Q 036323 288 KFFMVLDNLWTDDYRKWEP--FRNCLMN-GLRGSKILITTRK 326 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~IlvTtR~ 326 (583)
.=||||||+.......|.. +...+.. -.....+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4589999996655556664 3333322 1223457777763
No 148
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0028 Score=64.45 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hHHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCC
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ETVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTP 363 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 363 (583)
++.-++|+|+++..+....+.|...|..-.+++.+|++|.+ ..+...+ +....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 44558999999887777888888888776667766655554 4444332 336789999999999998887642 1
Q ss_pred CCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 364 SECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 364 ~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
. . ...++..++|.|+....+
T Consensus 206 ~---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C---h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755443
No 149
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.35 E-value=0.0005 Score=63.36 Aligned_cols=100 Identities=22% Similarity=0.297 Sum_probs=50.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
..-+.|+|.+|+|||.||..+.+... ...+ .+.|++. .+ ++..+..... ....+.....+ . +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~~------~~----L~~~l~~~~~-~~~~~~~~~~l----~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFITA------SD----LLDELKQSRS-DGSYEELLKRL----K-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEH------HH----HHHHHHCCHC-CTTHCHHHHHH----H-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEeec------Cc----eecccccccc-ccchhhhcCcc----c-c
Confidence 45688999999999999998887422 2222 3455553 23 3344433321 11222233322 2 3
Q ss_pred ceeEEEcCCCcccccchHh--hHHhhccC-CCCceEEEecCc
Q 036323 288 KFFMVLDNLWTDDYRKWEP--FRNCLMNG-LRGSKILITTRK 326 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IlvTtR~ 326 (583)
.=||||||+-......|.. +...+... .++ .+||||.-
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 4588999996544444432 33333221 223 47788874
No 150
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.34 E-value=0.0011 Score=66.58 Aligned_cols=121 Identities=11% Similarity=0.164 Sum_probs=68.8
Q ss_pred echhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHh
Q 036323 184 GRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEEL 263 (583)
Q Consensus 184 GR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (583)
+|........+++..-. .....+-+.|+|..|+|||.||..+++... ...+. +.+++++ .++..+-...
T Consensus 135 ~~~~~~~~~~~fi~~~~---~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~~------~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYP---PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHFP------EFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhh---ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEHH------HHHHHHHHHH
Confidence 45555555555554322 112345788999999999999999998532 22233 4455543 3444444443
Q ss_pred hcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHh--hHHhh-ccC-CCCceEEEecC
Q 036323 264 EGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEP--FRNCL-MNG-LRGSKILITTR 325 (583)
Q Consensus 264 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~IlvTtR 325 (583)
... +....+..+ .+-=||||||+..+....|.. +...+ ... ..+..+|+||.
T Consensus 204 ~~~-----~~~~~l~~l-----~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 204 SDG-----SVKEKIDAV-----KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred hcC-----cHHHHHHHh-----cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 211 122222222 245599999997666667754 44433 222 24556888886
No 151
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0017 Score=63.31 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=49.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccc--cccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDV--INNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
-++|.++|+||.|||+|++.+++...+ .+.|....-+.+.. ..++...+.. ....+..+.+.+.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 578999999999999999999987544 34454444444332 2233332222 12234556667777776
Q ss_pred CCce--eEEEcCCCc
Q 036323 286 GQKF--FMVLDNLWT 298 (583)
Q Consensus 286 ~k~~--LlVlDdv~~ 298 (583)
++.. .+.+|.|.+
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 6653 455888843
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0021 Score=72.14 Aligned_cols=135 Identities=15% Similarity=0.193 Sum_probs=75.7
Q ss_pred CceeechhHHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.++.++.|.+.+...... ........+.++|++|+|||+||+.+.... . ...+.++++.......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhccccc---
Confidence 35899999999999888632100 012334578999999999999999998742 1 1233445443222111
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcC-CceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEecC
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAG-QKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILITTR 325 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR 325 (583)
...+.+.++.-...+ ....+.+.+.. ...+|+||++.....+.++.|...+..+. .++-||+||.
T Consensus 530 --~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 530 --VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred --HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 222322222111000 00112222333 34699999998777667777776664321 2444777775
No 153
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.30 E-value=0.00035 Score=65.32 Aligned_cols=130 Identities=22% Similarity=0.207 Sum_probs=61.7
Q ss_pred echhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeC----CCC-----ChHH
Q 036323 184 GRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVS----DPF-----DEFN 254 (583)
Q Consensus 184 GR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~-----~~~~ 254 (583)
.+..+.....+.|.. ..++.+.|++|+|||.||....-+.-..+.|+.++++.-. +.. +..+
T Consensus 4 p~~~~Q~~~~~al~~---------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 4 PKNEEQKFALDALLN---------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp --SHHHHHHHHHHHH----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred CCCHHHHHHHHHHHh---------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 445566677777753 4499999999999999997776554344778777766421 110 0000
Q ss_pred ----HHHHHHHHhhcCccccccHHHHHHHH------HHHhcCC---ceeEEEcCCCcccccchHhhHHhhccCCCCceEE
Q 036323 255 ----VAKATIEELEGSAIDLHELNSLLRRI------GANIAGQ---KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKIL 321 (583)
Q Consensus 255 ----~~~~il~~l~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il 321 (583)
.+.-+...+..-. .....+.+.+.= ..+++|+ ..++|+|++.+....++..+ +...+.||++|
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEE
Confidence 1111222221110 111122221100 0133454 35999999977655555554 55567799999
Q ss_pred EecCc
Q 036323 322 ITTRK 326 (583)
Q Consensus 322 vTtR~ 326 (583)
++--.
T Consensus 151 ~~GD~ 155 (205)
T PF02562_consen 151 ITGDP 155 (205)
T ss_dssp EEE--
T ss_pred EecCc
Confidence 98754
No 154
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.00052 Score=65.64 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=28.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEe
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCV 246 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 246 (583)
.-.++|+|..|+|||||+..+..+ ....|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 335679999999999999998874 6667877766643
No 155
>PRK06526 transposase; Provisional
Probab=97.27 E-value=0.0007 Score=66.08 Aligned_cols=101 Identities=15% Similarity=0.075 Sum_probs=51.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
..-+.|+|++|+|||+||..+..... ...+. +.|+ +..+++..+..... ... +...+... .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~-----~~~---~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH-----AGR---LQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh-----cCc---HHHHHHHh--cc
Confidence 34688999999999999999876422 12222 2232 22334443332211 111 11223222 23
Q ss_pred ceeEEEcCCCcccccchH--hhHHhhcc-CCCCceEEEecCch
Q 036323 288 KFFMVLDNLWTDDYRKWE--PFRNCLMN-GLRGSKILITTRKE 327 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~IlvTtR~~ 327 (583)
.-||||||+.......+. .+...+.. ...++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 469999999543322222 23333322 22344 88888754
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.26 E-value=0.0013 Score=75.50 Aligned_cols=139 Identities=15% Similarity=0.245 Sum_probs=77.5
Q ss_pred CceeechhHHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.+.-++.|.+.+...... ........+.++|++|+|||+||+.+.+. .-..-...+-++.+.......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 57899999999998888533210 11223456779999999999999888762 1111122334444432221111
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcCCc-eeEEEcCCCcccccchHhhHHhhccC-----------CCCceEEEecC
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAGQK-FFMVLDNLWTDDYRKWEPFRNCLMNG-----------LRGSKILITTR 325 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTtR 325 (583)
..+.+.++.-...++ ...+.+.+..++ .+++||++...++..++.|...+..+ ...+.+|+||.
T Consensus 585 ---~~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred ---HHhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 111122211111000 112333444455 48999999877777777777766543 23566777776
Q ss_pred c
Q 036323 326 K 326 (583)
Q Consensus 326 ~ 326 (583)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 4
No 157
>PRK06921 hypothetical protein; Provisional
Probab=97.25 E-value=0.0013 Score=64.67 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=53.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccccc-CceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINN-FEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAG 286 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (583)
...+.++|.+|+|||+||..+++.. ... ...+++++.. +++..+.... ......+. .+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~-~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLN-RM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHH-Hh-c
Confidence 4578899999999999999999853 222 3345566532 2333322211 11111122 22 2
Q ss_pred CceeEEEcCCCc-----ccccchHh--hHHhhcc-CCCCceEEEecCc
Q 036323 287 QKFFMVLDNLWT-----DDYRKWEP--FRNCLMN-GLRGSKILITTRK 326 (583)
Q Consensus 287 k~~LlVlDdv~~-----~~~~~~~~--l~~~l~~-~~~gs~IlvTtR~ 326 (583)
+-=||||||+.. +....|.. +...+.. -..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 22234443 4443322 1234557888863
No 158
>PRK09183 transposase/IS protein; Provisional
Probab=97.22 E-value=0.0014 Score=64.33 Aligned_cols=101 Identities=14% Similarity=0.113 Sum_probs=51.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.|+|++|+|||+||..++.... ...+ .+.+++ ..++...+...... .. +...+... ..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~ 164 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VMA 164 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hcC
Confidence 34677999999999999999876321 1222 223333 22333333222111 11 11222222 234
Q ss_pred ceeEEEcCCCcccccchH--hhHHhhcc-CCCCceEEEecCc
Q 036323 288 KFFMVLDNLWTDDYRKWE--PFRNCLMN-GLRGSKILITTRK 326 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~IlvTtR~ 326 (583)
.-++|+||+.......+. .+...+.. -..++ +|+||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 569999999643333332 24433322 12344 7888874
No 159
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.22 E-value=0.011 Score=63.63 Aligned_cols=205 Identities=14% Similarity=0.117 Sum_probs=117.8
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc------ccccCceEEEEEeCCCCCh
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND------VINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~------~~~~f~~~~wv~~~~~~~~ 252 (583)
+..+-+|+.|..+|.+.+...-. ..+..+.+-|.|.+|+|||..+..|.+... .-..|+ .+.++.-.-...
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~--~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~ 471 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFIS--DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASP 471 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcC--CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCH
Confidence 34567999999999998865431 124456999999999999999999877421 122343 345565556678
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhc-----CCceeEEEcCCCcccccchHhhHHhhcc-CCCCceEEEecCc
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIA-----GQKFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILITTRK 326 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~IlvTtR~ 326 (583)
.+++..|...+.+..... ....+.|..+.. .+.+++++|+++.--....+-+...|.+ ..++++++|-+=.
T Consensus 472 ~~~Y~~I~~~lsg~~~~~---~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVTW---DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHhcccCcccH---HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 899999999998764321 122333433332 3568889998733111122334444544 4567776664421
Q ss_pred --hHHHh-----hhc---CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 327 --ETVAR-----MME---STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 327 --~~v~~-----~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
-+... ... ....+...|-+..+-.++......+. ........+-++++|+.-.|-.-.|+.+.
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 11111 111 13456677777777777776665332 11222233334455555445444444444
No 160
>PRK08118 topology modulation protein; Reviewed
Probab=97.22 E-value=0.00014 Score=66.27 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=27.0
Q ss_pred EEEEEecCCchHHHHHHHHHcCcccc-ccCceEEE
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVI-NNFEIRVR 243 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 243 (583)
-|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999864443 45666665
No 161
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0021 Score=65.49 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=82.5
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccc-------------------cCceE
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVIN-------------------NFEIR 241 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 241 (583)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+...-.. .+..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 35677778888888886432 2344699999999999999988876421100 11223
Q ss_pred EEEEeCCCCC---hHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCc
Q 036323 242 VRVCVSDPFD---EFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGS 318 (583)
Q Consensus 242 ~wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 318 (583)
..++.++... ..+..+.+.+....... .++.-++++|+++....+.-..++..+......+
T Consensus 77 lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 77 LELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EEecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 3333333222 12222222222211110 2566799999997655555566766666666778
Q ss_pred eEEEecCch-HHHhhhcC-CCeEEcCCCCh
Q 036323 319 KILITTRKE-TVARMMES-TDIVYVQGLSE 346 (583)
Q Consensus 319 ~IlvTtR~~-~v~~~~~~-~~~~~l~~L~~ 346 (583)
.+|++|... .+...+.+ ...+.+.+.+.
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchH
Confidence 888888743 33322222 55667776333
No 162
>PRK04296 thymidine kinase; Provisional
Probab=97.18 E-value=0.00079 Score=62.90 Aligned_cols=113 Identities=10% Similarity=-0.028 Sum_probs=60.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccc--cccHHHHHHHHHHHhcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAID--LHELNSLLRRIGANIAG 286 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~ 286 (583)
.++.|+|..|.||||++..+... ...+...++.+. ..++.......+.+.++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999887763 222222233332 1112122222344444322111 2234455555554 334
Q ss_pred CceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH
Q 036323 287 QKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET 328 (583)
Q Consensus 287 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 328 (583)
+.-+||+|.+.--+.++...+...+ ...|..|++|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5569999999432222233333332 345788999988744
No 163
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0007 Score=72.80 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=92.8
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
..+-+|-++-.++|++.|.-.. -...-..++++++|++|+|||+|++.+++ .....|- -+.++.--+..++-.-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~-l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQK-LTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHH-HhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhccc
Confidence 3567899999999999985432 01223457999999999999999999988 3444442 2344443333322100
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccccc----chHhhHHhhcc-CCC------------CceE-
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYR----KWEPFRNCLMN-GLR------------GSKI- 320 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~-~~~------------gs~I- 320 (583)
=-..+ ..-...+++.+++. +.++=|++||.++....+ .-..++..|.+ .++ =|.|
T Consensus 396 RRTYI------GamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 RRTYI------GAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccc------ccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 00000 11112344444443 456678999998542211 11223333322 111 1333
Q ss_pred EEecCc-hH-H-HhhhcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 321 LITTRK-ET-V-ARMMESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 321 lvTtR~-~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
.|||-| -+ . +..+....++++.+-+++|=.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 344433 22 2 2233446789999999999887777665
No 164
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.16 E-value=0.0019 Score=62.09 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=51.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHH----hhcC-----ccccccHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEE----LEGS-----AIDLHELNSL 276 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~----l~~~-----~~~~~~~~~~ 276 (583)
....++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+ .++... +... .....+....
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 45779999999999999999888764 22334567899887 4444433 233322 1000 0111122223
Q ss_pred HHHHHHHhcCCceeEEEcCC
Q 036323 277 LRRIGANIAGQKFFMVLDNL 296 (583)
Q Consensus 277 ~~~l~~~l~~k~~LlVlDdv 296 (583)
...+...+..+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 34444444456668888887
No 165
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.018 Score=62.21 Aligned_cols=166 Identities=13% Similarity=0.145 Sum_probs=90.3
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
...-+|.++-.++|.+++.-.. -.++-+.++++.+|++|||||++|+.++.- ....|. -++++.-.+..++-.-
T Consensus 410 deDHYgm~dVKeRILEfiAV~k-Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGK-LRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHh-hcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhhccc
Confidence 4567899999999999986432 113456789999999999999999999873 333332 2345544444332110
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc---c-chHhhHHhhcc-CC------------CCceEE
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY---R-KWEPFRNCLMN-GL------------RGSKIL 321 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~-~~~~l~~~l~~-~~------------~gs~Il 321 (583)
=-..+ ..-...+++.|+.. +-.+=|+.||.|+.-.. . .-..|+..|.+ .+ -=|+|+
T Consensus 484 RRTYV------GAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 RRTYV------GAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ceeee------ccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 00000 11123345555544 33455788888843110 0 11123333321 11 125565
Q ss_pred EecCchHH----HhhhcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 322 ITTRKETV----ARMMESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 322 vTtR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
+......+ .........|+|.+-..+|-..+-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 43321111 1112335688888888888776666554
No 166
>PRK04132 replication factor C small subunit; Provisional
Probab=97.16 E-value=0.0074 Score=68.12 Aligned_cols=155 Identities=13% Similarity=0.014 Sum_probs=95.7
Q ss_pred cCCchHHHHHHHHHcCccccccC-ceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEc
Q 036323 216 MGGIGKTTLAQLAYNDNDVINNF-EIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLD 294 (583)
Q Consensus 216 ~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 294 (583)
+.++||||+|..++++. ..+.+ ..++-++.++..... ..++++..+....+. -..+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 78899999999999852 11222 235556666544433 333333332211100 01245699999
Q ss_pred CCCcccccchHhhHHhhccCCCCceEEEecCch-HHHhhhc-CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHH
Q 036323 295 NLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-TVARMME-STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGI 372 (583)
Q Consensus 295 dv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~ 372 (583)
+++..+......|+..+......+++|++|.+. .+...+. ....+.+.+++.++-...+...+...+..- ..+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i----~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC----CHHH
Confidence 998776667777877776544566666666553 3333322 267899999999998888877654322111 1456
Q ss_pred HHHHhhhCCCCccchhhh
Q 036323 373 GRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 373 ~~~I~~~c~GlPLai~~~ 390 (583)
...|++.|+|.+..+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 778999999988654433
No 167
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.14 E-value=0.0018 Score=61.60 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=52.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHh----hcC-----ccccccHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEEL----EGS-----AIDLHELNSL 276 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l----~~~-----~~~~~~~~~~ 276 (583)
+...++.|+|.+|+|||+++.+++.. ....-..++|++... ++...+.+ +.... ... ..+..+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 55789999999999999999888763 223346789999875 55544333 32221 000 0111222233
Q ss_pred HHHHHHHhcC-CceeEEEcCC
Q 036323 277 LRRIGANIAG-QKFFMVLDNL 296 (583)
Q Consensus 277 ~~~l~~~l~~-k~~LlVlDdv 296 (583)
...+.+.+.. +.-+||+|.+
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCc
Confidence 4444444433 4558888887
No 168
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.14 E-value=0.0027 Score=61.47 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=53.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCcccccc----CceEEEEEeCCCCChHHHHHHHHHHhhcCcc------------c
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINN----FEIRVRVCVSDPFDEFNVAKATIEELEGSAI------------D 269 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------~ 269 (583)
....++.|+|.+|+|||+|+.+++........ -..++|++....++...+ .++++....... .
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 45679999999999999999988743222221 357899998777665443 333333322110 1
Q ss_pred cccHHHHHHHHHHHhc-C-CceeEEEcCC
Q 036323 270 LHELNSLLRRIGANIA-G-QKFFMVLDNL 296 (583)
Q Consensus 270 ~~~~~~~~~~l~~~l~-~-k~~LlVlDdv 296 (583)
..+.......+...+. . +.-|||+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 1222333344444443 3 5568899988
No 169
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.0013 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 170
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0099 Score=61.83 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=84.5
Q ss_pred CCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh
Q 036323 205 TNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI 284 (583)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (583)
......+.+.|++|+|||+||..++.. ..|+.+--++-.+-.... .......+.....+.-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhh
Confidence 345677889999999999999998863 456544322211100000 1111122223333344
Q ss_pred cCCceeEEEcCCCcccccch------------HhhHHhhccC-CCCce--EEEecCchHHHhhhcC----CCeEEcCCCC
Q 036323 285 AGQKFFMVLDNLWTDDYRKW------------EPFRNCLMNG-LRGSK--ILITTRKETVARMMES----TDIVYVQGLS 345 (583)
Q Consensus 285 ~~k~~LlVlDdv~~~~~~~~------------~~l~~~l~~~-~~gs~--IlvTtR~~~v~~~~~~----~~~~~l~~L~ 345 (583)
+..--.||+||+.. .-+| ..|...|... ..|-| |+-||....+...|+- ...|+++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 55667999999943 1222 2233333222 23333 4557777778777654 5678899998
Q ss_pred h-HHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhC
Q 036323 346 E-LECWSLFRRFALSGRTPSECDQLEGIGRGIVRKC 380 (583)
Q Consensus 346 ~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c 380 (583)
. ++..+.++..- ...+.+.+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 67777776642 122334455666666666
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0016 Score=72.02 Aligned_cols=155 Identities=20% Similarity=0.197 Sum_probs=83.3
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCc---cccccC--ceEEEEEeCCCCChHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDN---DVINNF--EIRVRVCVSDPFDEFN 254 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~f--~~~~wv~~~~~~~~~~ 254 (583)
..++||++|+.++++.|.... .+-+ .++|.+|||||+++.-++... .+.... ..++-++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~-----KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD--------- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT-----KNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD--------- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC-----CCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec---------
Confidence 468999999999999997654 2222 367999999999987666521 111111 1111111
Q ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHHh-cCCceeEEEcCCCcc-------c--ccchHhhHHhhccCCCCceEEEec
Q 036323 255 VAKATIEELEGSAIDLHELNSLLRRIGANI-AGQKFFMVLDNLWTD-------D--YRKWEPFRNCLMNGLRGSKILITT 324 (583)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------~--~~~~~~l~~~l~~~~~gs~IlvTt 324 (583)
+..-+.+. .-..+.++....+.+.+ +.++.+|++|.++.- . .+.-+.|...|..+. --.|=.||
T Consensus 234 ----~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT 307 (786)
T COG0542 234 ----LGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATT 307 (786)
T ss_pred ----HHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEecc
Confidence 11111111 11233444444444433 345899999998641 0 111222333333322 12244555
Q ss_pred CchHH--Hh----hhcCCCeEEcCCCChHHHHHHHHHH
Q 036323 325 RKETV--AR----MMESTDIVYVQGLSELECWSLFRRF 356 (583)
Q Consensus 325 R~~~v--~~----~~~~~~~~~l~~L~~~ea~~Lf~~~ 356 (583)
-++-- .. .......+.+...+.+++..+++..
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 44311 10 1123678889999999998888643
No 172
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.0038 Score=63.26 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH-HHhhhc-CCCeEEcCCCChHHHHHHHHHH
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET-VARMME-STDIVYVQGLSELECWSLFRRF 356 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~ 356 (583)
+++-++|+|++..-+......+...+.....++.+|++|.+.. +...+. ....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444667788876666666667777755445666777776643 333322 2577889999999998888653
No 173
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.10 E-value=0.0025 Score=59.37 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=36.4
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
-.++||-++.++++.-.-.+ ++.+-+.|.||+|+||||-+..+++
T Consensus 26 l~dIVGNe~tv~rl~via~~-------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE-------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc-------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 45789999999988876643 4577788999999999998877766
No 174
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.08 E-value=0.0029 Score=60.50 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=31.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
....++.|.|.+|+||||||.+++.. ....-..++|++....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCC
Confidence 55789999999999999999988763 22223456778765444
No 175
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.07 E-value=0.011 Score=59.61 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=24.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+..++|+|++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999985
No 176
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.07 E-value=0.0071 Score=59.56 Aligned_cols=173 Identities=17% Similarity=0.194 Sum_probs=96.2
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC-ccccccCceEEEEEeCCCCCh-HHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND-NDVINNFEIRVRVCVSDPFDE-FNVA 256 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~wv~~~~~~~~-~~~~ 256 (583)
...++|-.++...+-.++...- -.+...-|.|+|+.|.|||+|......+ .++.++| +-|...+..-. .-.+
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~---~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTI---LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIAL 96 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHH---HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHH
Confidence 4468898888888888875432 1234557789999999999999888775 2233333 33444433222 2234
Q ss_pred HHHHHHhh----cCccccccHHHHHHHHHHHhc------CCceeEEEcCCCcccccchHh-hHHhh---c-cCCCCceEE
Q 036323 257 KATIEELE----GSAIDLHELNSLLRRIGANIA------GQKFFMVLDNLWTDDYRKWEP-FRNCL---M-NGLRGSKIL 321 (583)
Q Consensus 257 ~~il~~l~----~~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~-l~~~l---~-~~~~gs~Il 321 (583)
+.|..++. .......+..+....+...|+ +-++++|+|.++-.-...-.. +-..+ . ...|-|.|-
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig 176 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIG 176 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEE
Confidence 44444443 222223333334444444443 235788888774321111111 22222 1 245567788
Q ss_pred EecCchHH---HhhhcC---CC-eEEcCCCChHHHHHHHHHHh
Q 036323 322 ITTRKETV---ARMMES---TD-IVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 322 vTtR~~~v---~~~~~~---~~-~~~l~~L~~~ea~~Lf~~~a 357 (583)
+|||-... ...+.+ .. ++-+++++-++...++++..
T Consensus 177 ~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 177 VTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99996422 222222 23 44567788888888888865
No 177
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.05 E-value=0.0021 Score=69.78 Aligned_cols=44 Identities=30% Similarity=0.502 Sum_probs=36.1
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+++|.+..++.+...+.... ..-+.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~-------~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN-------PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999998774332 34567999999999999999976
No 178
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.05 E-value=0.00051 Score=60.55 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=62.9
Q ss_pred eechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccc-cccCceEEEEEeCCCCChHHHHHHHHH
Q 036323 183 RGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV-INNFEIRVRVCVSDPFDEFNVAKATIE 261 (583)
Q Consensus 183 vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (583)
||+...++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|... ++... +
T Consensus 1 vG~S~~~~~l~~~l~~~a-----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~---------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P---------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C----------
T ss_pred CCCCHHHHHHHHHHHHHh-----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c----------
Confidence 466667777777665432 23456789999999999999998874322 1122211 11100 0
Q ss_pred HhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccC-CCCceEEEecCch
Q 036323 262 ELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG-LRGSKILITTRKE 327 (583)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IlvTtR~~ 327 (583)
.+.+.. .+.-.|+|+|+..-+......+...+... ....|+|.||...
T Consensus 62 ---------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 25557889999776666666677777543 5678999998743
No 179
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.05 E-value=0.0037 Score=60.14 Aligned_cols=91 Identities=15% Similarity=0.042 Sum_probs=53.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccc----cCceEEEEEeCCCCChHHHHHHHHHHhhcCc---------ccccc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVIN----NFEIRVRVCVSDPFDEFNVAKATIEELEGSA---------IDLHE 272 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~---------~~~~~ 272 (583)
....++.|+|.+|+|||+||..++....... .=..++|++....++...+ .++........ ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCC
Confidence 4567999999999999999988875321111 1145789888776665443 33333322110 01233
Q ss_pred HHHHHHHHHHHhc----CCceeEEEcCCC
Q 036323 273 LNSLLRRIGANIA----GQKFFMVLDNLW 297 (583)
Q Consensus 273 ~~~~~~~l~~~l~----~k~~LlVlDdv~ 297 (583)
.+++...+..... .+.-|+|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4444444444432 344589999973
No 180
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.04 E-value=0.00033 Score=61.78 Aligned_cols=88 Identities=23% Similarity=0.186 Sum_probs=46.8
Q ss_pred EEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCcee
Q 036323 211 ISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFF 290 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 290 (583)
|.|+|++|+|||+||+.++.. .. ....-+.++...+..++....--. ... .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 679999999999999999873 21 123335666666666544321111 000 000000011111 17889
Q ss_pred EEEcCCCcccccchHhhHHhh
Q 036323 291 MVLDNLWTDDYRKWEPFRNCL 311 (583)
Q Consensus 291 lVlDdv~~~~~~~~~~l~~~l 311 (583)
+|||++...+...+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999655555555555554
No 181
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.04 E-value=0.0023 Score=62.62 Aligned_cols=90 Identities=22% Similarity=0.220 Sum_probs=53.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccc----cCceEEEEEeCCCCChHHHHHHHHHHhhcCcc------------c
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVIN----NFEIRVRVCVSDPFDEFNVAKATIEELEGSAI------------D 269 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------~ 269 (583)
....+.=|+|.+|+|||.|+.+++-...... .=..++|++-...++...+. +|++....... +
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCC
Confidence 3456889999999999999987764322221 22468999998888877664 45555432211 1
Q ss_pred cccHHHHHHHHHHHhc-CCceeEEEcCC
Q 036323 270 LHELNSLLRRIGANIA-GQKFFMVLDNL 296 (583)
Q Consensus 270 ~~~~~~~~~~l~~~l~-~k~~LlVlDdv 296 (583)
..+...++..+...+. .+--|||+|.+
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHhhccccceEEEEecch
Confidence 1222233333333343 33458889987
No 182
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.0019 Score=65.47 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=55.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQK 288 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 288 (583)
..+.++|.+|+|||+||..+++.. ...-..++++++. +++..+...-... ..+....... +. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~~~~~----l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD------ELIEILREIRFNN---DKELEEVYDL----LI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHHHHHH----hc-cC
Confidence 568999999999999999998853 2222345565543 2333332211111 1111111222 22 23
Q ss_pred eeEEEcCCCcccccchHh--hHHhhcc-CCCCceEEEecCc
Q 036323 289 FFMVLDNLWTDDYRKWEP--FRNCLMN-GLRGSKILITTRK 326 (583)
Q Consensus 289 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~IlvTtR~ 326 (583)
=||||||+.......|.. +...+.. -..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996554444432 4444432 1234568888874
No 183
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.02 E-value=0.0058 Score=69.49 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=92.4
Q ss_pred cCCceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD 251 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 251 (583)
.-.++.|.+..+++|.+++...-.. -+-...+.+.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecH----
Confidence 3446889999999998877432100 011234568899999999999999998842 2222 222211
Q ss_pred hHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc-----------cchHhhHHhhccC-CCCce
Q 036323 252 EFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY-----------RKWEPFRNCLMNG-LRGSK 319 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~ 319 (583)
.+. .... ......+...+.......+.+|+||++..... .....+...+... ..+..
T Consensus 247 --~i~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 --EIM----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred --HHh----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 110 0000 00111222223333345678999999843110 0122233333221 22333
Q ss_pred EEE-ecCchH-HHhhhc----CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCc
Q 036323 320 ILI-TTRKET-VARMME----STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLP 384 (583)
Q Consensus 320 Ilv-TtR~~~-v~~~~~----~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 384 (583)
++| ||.... +...+. -...+.+...+.++-.+++....-... ..... ....+++.+.|.-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccccc----CHHHHHHhCCCCC
Confidence 444 444332 211111 134677888888888888886542111 11111 2355777777754
No 184
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.00 E-value=0.00062 Score=68.84 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=41.5
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+++|-++.++++++++.... .+.....+++.|+|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a-~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA-QGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH-hcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997654 112345689999999999999999999874
No 185
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.00 E-value=0.01 Score=67.43 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=92.8
Q ss_pred CCceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
-..+.|.+..+++|.+.+..+-.. .+-..++-+.++|++|+|||+||+.+++.. ...| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH---
Confidence 346788888888777766421100 011234568899999999999999999842 2222 222210
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcc------c-cc-----chHhhHHhhcc--CCCCc
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTD------D-YR-----KWEPFRNCLMN--GLRGS 318 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~-~~-----~~~~l~~~l~~--~~~gs 318 (583)
.++....+. ....+.......-...+.+|+||+++.- . .. ....+...+.. ...+.
T Consensus 522 -----~l~~~~vGe-----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -----EILSKWVGE-----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -----HHhhcccCc-----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111111110 0111222222223456799999998431 0 00 11223333322 22345
Q ss_pred eEEEecCchHHHh-h-h---cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 319 KILITTRKETVAR-M-M---ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 319 ~IlvTtR~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
.||.||..+.... . + .-...+.++..+.++-.++|+.+..... .....+ ...+++.|.|.
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~ 656 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGY 656 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCC
Confidence 5666776554322 1 1 1256788888888888888876542211 111122 24466777764
No 186
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.99 E-value=0.0015 Score=64.90 Aligned_cols=136 Identities=23% Similarity=0.245 Sum_probs=72.2
Q ss_pred eeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC-ccccccCceEEE----EEeCCCC------
Q 036323 182 VRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND-NDVINNFEIRVR----VCVSDPF------ 250 (583)
Q Consensus 182 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~w----v~~~~~~------ 250 (583)
+-+|..+..--.++|+.++ ...|.+.|.+|.|||-||....-. ...++.|..++- +.++++.
T Consensus 226 i~prn~eQ~~ALdlLld~d-------I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDD-------IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred cCcccHHHHHHHHHhcCCC-------CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCc
Confidence 3457777777777886554 889999999999999988554211 122334433221 2223221
Q ss_pred ---ChHHHHHHHHHHhhcCc-cccccHHHHHHHHH---------HHhcCC---ceeEEEcCCCcccccchHhhHHhhccC
Q 036323 251 ---DEFNVAKATIEELEGSA-IDLHELNSLLRRIG---------ANIAGQ---KFFMVLDNLWTDDYRKWEPFRNCLMNG 314 (583)
Q Consensus 251 ---~~~~~~~~il~~l~~~~-~~~~~~~~~~~~l~---------~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~ 314 (583)
.+.-.++.|...+..-. .+......+...+. .+.+|+ +-++|+|.+.+-.+.+ +...+...
T Consensus 299 eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe---ikTiltR~ 375 (436)
T COG1875 299 EEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE---LKTILTRA 375 (436)
T ss_pred hhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH---HHHHHHhc
Confidence 11112233332222110 01111112222211 123444 3589999997654444 44456677
Q ss_pred CCCceEEEecCch
Q 036323 315 LRGSKILITTRKE 327 (583)
Q Consensus 315 ~~gs~IlvTtR~~ 327 (583)
+.||||+.|.-..
T Consensus 376 G~GsKIVl~gd~a 388 (436)
T COG1875 376 GEGSKIVLTGDPA 388 (436)
T ss_pred cCCCEEEEcCCHH
Confidence 8899999987633
No 187
>PHA00729 NTP-binding motif containing protein
Probab=96.99 E-value=0.0053 Score=58.15 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999998873
No 188
>PTZ00494 tuzin-like protein; Provisional
Probab=96.97 E-value=0.046 Score=56.23 Aligned_cols=171 Identities=13% Similarity=0.172 Sum_probs=105.6
Q ss_pred cccccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 174 TSLIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 174 ~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
..+..+..+|.|+.|-..+.+.|.... ...++++.+.|.-|.||++|.+....... -..++|++... +
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld----~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---E 432 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMA----PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---E 432 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhcc----CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---c
Confidence 344567789999999888888886554 46789999999999999999988776322 23567887754 4
Q ss_pred HHHHHHHHHhhcCcccc-cc----HHHHHHHHHHHhcCCceeEEEcCCCccc-ccchHhhHHhhccCCCCceEEEecCch
Q 036323 254 NVAKATIEELEGSAIDL-HE----LNSLLRRIGANIAGQKFFMVLDNLWTDD-YRKWEPFRNCLMNGLRGSKILITTRKE 327 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~-~~----~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IlvTtR~~ 327 (583)
+.++.+.+.++.+..+. .| +.+....-+....++.-+||+-=-...+ ...+++. ..|.....-|+|++----+
T Consensus 433 DtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplE 511 (664)
T PTZ00494 433 DTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMK 511 (664)
T ss_pred chHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHh
Confidence 56788888888775432 22 2222222333344565566653221111 1112221 1233444567777755444
Q ss_pred HHHhh---hcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 328 TVARM---MESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 328 ~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
.+... +.....|.+++++..+|.++-.+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 33221 1225678899999999988876643
No 189
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.94 E-value=0.0086 Score=56.82 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=96.3
Q ss_pred CCceeechhHHH---HHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHH
Q 036323 179 VSEVRGRDEEMR---SIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 179 ~~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (583)
-.+++|.++... -|++.|..+. .-++..++-|..+|++|.|||.+|+.+.+...+ .| +.+. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe-~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk-------a 184 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPE-RFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK-------A 184 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChH-HhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec-------h
Confidence 357889876653 4566665543 223567889999999999999999999995332 22 1111 1
Q ss_pred HHHHHHHhhcCccccccHHHHHHHHHH-HhcCCceeEEEcCCCccc------------ccchHhhHHhhc--cCCCCceE
Q 036323 256 AKATIEELEGSAIDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDD------------YRKWEPFRNCLM--NGLRGSKI 320 (583)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------------~~~~~~l~~~l~--~~~~gs~I 320 (583)
.+-|.+..+.. ...+..+-+ .-+.-++++.||.++--. .+..+.|+.-+. ..+.|...
T Consensus 185 t~liGehVGdg-------ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 185 TELIGEHVGDG-------ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHHHHHHhhhH-------HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 11122222211 111222222 223568999999874210 111223333332 13446555
Q ss_pred EEecCchHHHhh-hcC--CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 321 LITTRKETVARM-MES--TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 321 lvTtR~~~v~~~-~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
|-.|.+...... ..+ ...++...-+++|-.+++..++-.-..+- ..-.+.++++.+|+
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-----~~~~~~~~~~t~g~ 318 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-----DADLRYLAAKTKGM 318 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-----ccCHHHHHHHhCCC
Confidence 666665544322 222 45677777888888888888773222111 11134566777664
No 190
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.93 E-value=0.004 Score=57.38 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=27.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEE
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRV 244 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 244 (583)
....+|.++|++|+||||+|+.+++. ....+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 34569999999999999999999873 33445455555
No 191
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0071 Score=61.83 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=57.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC-CChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP-FDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
..++|+|+|++|+||||++..++.... ...+ .+..++.... ....+-+....+.++.+.....+...+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999988876322 1222 2334443221 122333344334444332222344455555544322
Q ss_pred C-CceeEEEcCCCccc--ccchHhhHHhhccCCCCceEEE
Q 036323 286 G-QKFFMVLDNLWTDD--YRKWEPFRNCLMNGLRGSKILI 322 (583)
Q Consensus 286 ~-k~~LlVlDdv~~~~--~~~~~~l~~~l~~~~~gs~Ilv 322 (583)
. +.=++++|-.-... ......+...+....+...++|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 1 23478888874321 2234445444433333333443
No 192
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.91 E-value=0.0092 Score=53.45 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=60.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC---CCChHHHHHHHHHHh-----hcC-----ccccc---c
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD---PFDEFNVAKATIEEL-----EGS-----AIDLH---E 272 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l-----~~~-----~~~~~---~ 272 (583)
..|-|++..|.||||+|....-. ...+=..+.++..-. .......++.+- .+ +.. ..... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 46778888999999999666542 222222233333322 223333333320 00 000 00011 1
Q ss_pred HHHHHHHHHHHhcCC-ceeEEEcCCCcc---cccchHhhHHhhccCCCCceEEEecCchH
Q 036323 273 LNSLLRRIGANIAGQ-KFFMVLDNLWTD---DYRKWEPFRNCLMNGLRGSKILITTRKET 328 (583)
Q Consensus 273 ~~~~~~~l~~~l~~k-~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 328 (583)
.....+..++.+... -=|||||++-.. ..-..+.+...+.....+.-+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122333344444443 459999998321 22245567777766677888999999843
No 193
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0016 Score=63.62 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=48.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAG 286 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (583)
+..-+.++|.+|+|||.||..+.+... ..--.+.++++ .++..++....... .....|.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~------~el~~~Lk~~~~~~--------~~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITA------PDLLSKLKAAFDEG--------RLEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEH------HHHHHHHHHHHhcC--------chHHHHHHHh-h
Confidence 455788999999999999999998533 22233455543 34555554444321 1112222211 1
Q ss_pred CceeEEEcCCCcccccchH
Q 036323 287 QKFFMVLDNLWTDDYRKWE 305 (583)
Q Consensus 287 k~~LlVlDdv~~~~~~~~~ 305 (583)
+-=||||||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2349999999665555554
No 194
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.89 E-value=0.0042 Score=63.16 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=61.7
Q ss_pred HHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCce-EEEEEeCC-CCChHHHHHHHHHHhhc
Q 036323 188 EMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEI-RVRVCVSD-PFDEFNVAKATIEELEG 265 (583)
Q Consensus 188 e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~il~~l~~ 265 (583)
...++++.+..-. ...-+.|+|.+|+|||||++.+++... .++-+. ++|+.+.+ ..++.++++.+...+..
T Consensus 119 ~~~RvID~l~PiG------kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG------KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC------CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3455777775332 334568999999999999999887421 112233 36666655 44667777877776664
Q ss_pred Ccccccc-----HHHHHHHHHHHh--cCCceeEEEcCC
Q 036323 266 SAIDLHE-----LNSLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 266 ~~~~~~~-----~~~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
...+... .......+.+++ ++++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4322111 111111222222 588999999999
No 195
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.87 E-value=0.0028 Score=57.73 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=66.4
Q ss_pred eeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHH
Q 036323 182 VRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIE 261 (583)
Q Consensus 182 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (583)
++|....+.++.+.+..-. ....-|.|+|..|+||+.+|+.+++.... .-...+-|+++.- +... +-.
T Consensus 1 liG~s~~m~~~~~~~~~~a-----~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~-~~~~----~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----SSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAAL-PEEL----LES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----TSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS--HHH----HHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----CCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhh-hcch----hhh
Confidence 3677778888887775543 22345669999999999999999984221 1122233444432 2222 223
Q ss_pred HhhcCccc-----cccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccC------C-----CCceEEEecC
Q 036323 262 ELEGSAID-----LHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG------L-----RGSKILITTR 325 (583)
Q Consensus 262 ~l~~~~~~-----~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~IlvTtR 325 (583)
.+.+.... ......+.. ....=.|+||++..-.......|...+..+ . ...|||.||.
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~------~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLE------QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS 142 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHH------HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES
T ss_pred hhhccccccccccccccCCcee------eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecC
Confidence 33332111 011111111 123447899999765555555566665321 1 2568888887
Q ss_pred c
Q 036323 326 K 326 (583)
Q Consensus 326 ~ 326 (583)
.
T Consensus 143 ~ 143 (168)
T PF00158_consen 143 K 143 (168)
T ss_dssp S
T ss_pred c
Confidence 4
No 196
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.86 E-value=0.0062 Score=58.34 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=114.3
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCc---cc-cccCceEEEEEeCCC-------
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDN---DV-INNFEIRVRVCVSDP------- 249 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~-~~~f~~~~wv~~~~~------- 249 (583)
.+.++++....+..... .+..+-..++|++|.||-|.+..+.+.. .+ +-.-+..-|.+-+..
T Consensus 14 ~l~~~~e~~~~Lksl~~-------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS-------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred hcccHHHHHHHHHHhcc-------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 35677777777766553 2347788899999999999886554431 11 112233344432221
Q ss_pred ---C-----------ChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCce-eEEEcCCCcccccchHhhHHhhccC
Q 036323 250 ---F-----------DEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKF-FMVLDNLWTDDYRKWEPFRNCLMNG 314 (583)
Q Consensus 250 ---~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 314 (583)
. ...-+.+++++.+....+-.. -..+.| ++|+-.+++-..+....|+.....-
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 1 112233444444332211000 012344 5666666443333444566655555
Q ss_pred CCCceEEEecCch--HHHhhhcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhh
Q 036323 315 LRGSKILITTRKE--TVARMMESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGS 392 (583)
Q Consensus 315 ~~gs~IlvTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 392 (583)
...+|+|+...+. -....-...-.+.+...+++|-...+...+-.++-.- | .+++.+|+++++|+-.-.-.+..
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHHhcccHHHHHHHHH
Confidence 5678888754431 1111112245688999999999999998875443321 2 67899999999997554444433
Q ss_pred hhccCC----------CHHHHHHHHhhhc
Q 036323 393 LLQFKR----------TKEEWQSALDSEM 411 (583)
Q Consensus 393 ~L~~~~----------~~~~w~~~l~~~~ 411 (583)
.++.+. ..-+|+-++.+..
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHH
Confidence 332221 2347877766544
No 197
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.86 E-value=0.0037 Score=67.39 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=58.7
Q ss_pred CCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh
Q 036323 205 TNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI 284 (583)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (583)
.+.-+++.++|++|.||||||.-++++. .| .++=+++|+.-+...+-..|...+....... .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 4567899999999999999999988743 22 2566777877666666655555544332110 1
Q ss_pred cCCceeEEEcCCCcccccchHhhHHhh
Q 036323 285 AGQKFFMVLDNLWTDDYRKWEPFRNCL 311 (583)
Q Consensus 285 ~~k~~LlVlDdv~~~~~~~~~~l~~~l 311 (583)
.+++.-||+|.++.......+.++..+
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHH
Confidence 267888999999654433345555544
No 198
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.023 Score=60.26 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=85.1
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCC-----CCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQ-----QTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~-----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.-..+=|.+..+.+|.+++..-..+. +-..++-|.++|++|+|||.||+.++++..+ -++.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEeecch---
Confidence 34567789999988888876432100 1134567889999999999999999985332 22333321
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc-----------cchHhhHHhhcc---C-CCC
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY-----------RKWEPFRNCLMN---G-LRG 317 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~-~~g 317 (583)
+|+..+.+ .+.+.+.+...+.-..-+++++||+++--.+ ....+|...+.. . ..|
T Consensus 258 -----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 -----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred -----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 12222221 1122222333334456799999999843111 112233333311 1 112
Q ss_pred ceEEE---ecCchHHHhhh---cC-CCeEEcCCCChHHHHHHHHHHh
Q 036323 318 SKILI---TTRKETVARMM---ES-TDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 318 s~Ilv---TtR~~~v~~~~---~~-~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
-.||| |+|...+-..+ +. .+.|.+.--+..+-.+++...+
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 22332 45544332222 22 4567777777666666666554
No 199
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.85 E-value=0.0008 Score=57.68 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 200
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.84 E-value=0.0085 Score=64.01 Aligned_cols=160 Identities=17% Similarity=0.113 Sum_probs=81.9
Q ss_pred CceeechhHHHHHHHHhhcC---CCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQ---GSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVA 256 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~---~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (583)
.++.|.+..++.+......- ....+-..++-|.++|++|+|||.+|+.+.+.. .-.| +-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH--------
Confidence 45778776666555432110 000012345678899999999999999998842 1121 1122111
Q ss_pred HHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc-------cc-ch----HhhHHhhccCCCCceEEEec
Q 036323 257 KATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD-------YR-KW----EPFRNCLMNGLRGSKILITT 324 (583)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~-~~----~~l~~~l~~~~~gs~IlvTt 324 (583)
+.....+. .. ..+.+.+...-...+++|+||+++..- .. .- ..+...+.....+..||.||
T Consensus 295 --l~~~~vGe--se---~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFGGIVGE--SE---SRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hcccccCh--HH---HHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 11100000 01 111122222223578999999985310 00 01 11222223333445566677
Q ss_pred CchHH-Hhhh----cCCCeEEcCCCChHHHHHHHHHHhcc
Q 036323 325 RKETV-ARMM----ESTDIVYVQGLSELECWSLFRRFALS 359 (583)
Q Consensus 325 R~~~v-~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 359 (583)
..... ...+ .-...+.++..+.++-.++|..+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 65432 1111 12567888888999999999887643
No 201
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.84 E-value=0.012 Score=54.43 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=63.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeC--CCCChHHHH------HHHHHHhhcCc------cccccH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVS--DPFDEFNVA------KATIEELEGSA------IDLHEL 273 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~~------~~il~~l~~~~------~~~~~~ 273 (583)
..+++|+|..|+|||||.+.++.. .....+.+++.-. ...+..... .++++.++... ...+.-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 458999999999999999999873 2223344443211 111221111 11333333211 111222
Q ss_pred HHHHHHHHHHhcCCceeEEEcCCCc-ccccchHhhHHhhccC-CC-CceEEEecCchHHH
Q 036323 274 NSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNG-LR-GSKILITTRKETVA 330 (583)
Q Consensus 274 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~IlvTtR~~~v~ 330 (583)
+...-.+...+-..+-++++|+.-. -|......+...+... .. |..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2223345555667888999999743 2222333444444332 22 66788888876654
No 202
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.84 E-value=0.0078 Score=58.28 Aligned_cols=87 Identities=18% Similarity=0.144 Sum_probs=53.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCc------------------
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSA------------------ 267 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------ 267 (583)
+...++.|.|.+|+|||+|+.++... ...+=..++|++..+. ..++.+++ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 56789999999999999999998653 1122346788887654 34444432 2222110
Q ss_pred --cccccHHHHHHHHHHHhcC-CceeEEEcCCC
Q 036323 268 --IDLHELNSLLRRIGANIAG-QKFFMVLDNLW 297 (583)
Q Consensus 268 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 297 (583)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666654 56689999974
No 203
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.83 E-value=0.0042 Score=55.93 Aligned_cols=39 Identities=28% Similarity=0.207 Sum_probs=28.3
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
++.|+|.+|+|||+++..+.... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36799999999999999987742 2233456777766543
No 204
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0084 Score=54.93 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=59.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC--CCChHHHHHHHHHHhhc--Cccc----------cccH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD--PFDEFNVAKATIEELEG--SAID----------LHEL 273 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~--~~~~----------~~~~ 273 (583)
..+++|+|..|.|||||.+.++.-. ....+.+++.-.. ....... ...+.- +... .+.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 4589999999999999999998732 2223333332110 0000000 011110 0000 1111
Q ss_pred HHHHHHHHHHhcCCceeEEEcCCCc-ccccchHhhHHhhccCCCCceEEEecCchHHHh
Q 036323 274 NSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILITTRKETVAR 331 (583)
Q Consensus 274 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 331 (583)
+...-.+...+-.++-+|++|+... -|......+...+.....+..||++|.+.....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 1122234455567788999999743 222233344444433233567888888776654
No 205
>PHA02244 ATPase-like protein
Probab=96.80 E-value=0.0067 Score=61.56 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|.|+|++|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999874
No 206
>PRK13695 putative NTPase; Provisional
Probab=96.79 E-value=0.0021 Score=59.14 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 207
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.78 E-value=0.015 Score=52.84 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCceeEEEcCCCc--ccccchHhhHHhhc-cCCCCceEEEecCchHHHhhhc
Q 036323 273 LNSLLRRIGANIAGQKFFMVLDNLWT--DDYRKWEPFRNCLM-NGLRGSKILITTRKETVARMME 334 (583)
Q Consensus 273 ~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~l~~~l~-~~~~gs~IlvTtR~~~v~~~~~ 334 (583)
-++..-.+.+.+-+++-+|+-|.--. +....|+-+ ..|. -+..|+.||++|-+......+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34444456666778899999996421 222345543 3343 3567999999999988876653
No 208
>PRK06696 uridine kinase; Validated
Probab=96.76 E-value=0.0017 Score=62.46 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=35.9
Q ss_pred echhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 184 GRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 184 GR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.|++-+++|.+.+.... .+.+.+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~----~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN----LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC----CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888888886533 346889999999999999999999873
No 209
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.76 E-value=0.0015 Score=59.82 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=28.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccc-ccCceEEEEEeCCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVI-NNFEIRVRVCVSDP 249 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 249 (583)
..++.+.|+.|+|||.||+.+.+. .. +.....+-++.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcc
Confidence 467889999999999999998873 22 33445555666543
No 210
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.76 E-value=0.0074 Score=60.81 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=41.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCcccc----ccCceEEEEEeCCCCChHHHHHHHHHHhhc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVRVCVSDPFDEFNVAKATIEELEG 265 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 265 (583)
+..+++-|+|.+|+|||+|+.+++-..... ..=..++|++....++...+. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 557899999999999999998766321211 112468999998888877654 34555543
No 211
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.75 E-value=0.0033 Score=63.13 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=53.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCc-----cccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSA-----IDLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 280 (583)
+..+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++... ..+.+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 56779999999999999999887753 22334567888887766543 233333221 1223445555555
Q ss_pred HHHhc-CCceeEEEcCC
Q 036323 281 GANIA-GQKFFMVLDNL 296 (583)
Q Consensus 281 ~~~l~-~k~~LlVlDdv 296 (583)
...++ +..-+||+|.+
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55444 34569999997
No 212
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.022 Score=60.45 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=84.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
+.-|.++|++|+|||-||++|+|. ..-+| +.+..+ +++... .+ . +...+.+..++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkY---VG-E-----SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKY---VG-E-----SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHH---hh-h-----HHHHHHHHHHHhhcCC
Confidence 556889999999999999999994 44444 333221 111111 11 0 1111222222233467
Q ss_pred ceeEEEcCCCc-----ccccc------hHhhHHhhc--cCCCCceEEEecCchHHHhh--hcC---CCeEEcCCCChHHH
Q 036323 288 KFFMVLDNLWT-----DDYRK------WEPFRNCLM--NGLRGSKILITTRKETVARM--MES---TDIVYVQGLSELEC 349 (583)
Q Consensus 288 ~~LlVlDdv~~-----~~~~~------~~~l~~~l~--~~~~gs~IlvTtR~~~v~~~--~~~---~~~~~l~~L~~~ea 349 (583)
+++|+||.++. .+... .++|+.-+. ....|..||-.|..+++... +.+ ...+.++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 99999999853 11112 223333332 23456677776665554321 222 56777888888999
Q ss_pred HHHHHHHhccCCCC-CCCchHHHHHHHHhhhCCCCc
Q 036323 350 WSLFRRFALSGRTP-SECDQLEGIGRGIVRKCKGLP 384 (583)
Q Consensus 350 ~~Lf~~~a~~~~~~-~~~~~~~~~~~~I~~~c~GlP 384 (583)
.++++........+ ...-++.++++ ..+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~--~~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIAR--NTKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhh--cccccCCc
Confidence 99998877532222 22235555543 24455543
No 213
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.73 E-value=0.0036 Score=62.81 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=54.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCc-----cccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSA-----IDLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 280 (583)
+..+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++... ..+...++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 56789999999999999999887763 22333456788877655542 233333221 1223445555555
Q ss_pred HHHhc-CCceeEEEcCCC
Q 036323 281 GANIA-GQKFFMVLDNLW 297 (583)
Q Consensus 281 ~~~l~-~k~~LlVlDdv~ 297 (583)
....+ +..-++|+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55443 456699999983
No 214
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.72 E-value=0.011 Score=57.05 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=72.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-----CCChHHHHHHHHHHhhcCcc-------ccccHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-----PFDEFNVAKATIEELEGSAI-------DLHELN 274 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~-------~~~~~~ 274 (583)
...+++|+|.+|+|||||++.+.. ....-.+.+++.-.+ .....+...++++.++.... +.+.-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 345899999999999999999987 333333444443221 11223345555665553321 112222
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCccc-ccchHhhHHhhcc--CCCCceEEEecCchHHHhhhcC
Q 036323 275 SLLRRIGANIAGQKFFMVLDNLWTDD-YRKWEPFRNCLMN--GLRGSKILITTRKETVARMMES 335 (583)
Q Consensus 275 ~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~~~~ 335 (583)
.-.-.+.+.|.-++-++|.|..-+.- ...-.++...|.. ...|...+..|-+-.+...+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 22234556677889999999974422 1122334444432 2346778888888888776544
No 215
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.71 E-value=0.0035 Score=57.27 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=74.6
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHH---HHHHHHHHHhcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELN---SLLRRIGANIAG 286 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~---~~~~~l~~~l~~ 286 (583)
++.|.|.+|+|||++|..+..... . ..+++.-... ...+....+.......+..-...+ .+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~--~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~- 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG--L---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA- 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC--C---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-
Confidence 688999999999999999876311 1 1233333332 233455555444443322211111 23333433333
Q ss_pred CceeEEEcCCCc--c-----cc-cchHh----hHHhhccCCCCceEEEecCchHHHhhhcCCCeEEcCCCChHHHHHHHH
Q 036323 287 QKFFMVLDNLWT--D-----DY-RKWEP----FRNCLMNGLRGSKILITTRKETVARMMESTDIVYVQGLSELECWSLFR 354 (583)
Q Consensus 287 k~~LlVlDdv~~--~-----~~-~~~~~----l~~~l~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 354 (583)
+.-++++|.+-. . +. ..|.. +...+. ..+..+|+|+... -.+..+.++.-..|.
T Consensus 76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~Ev------------g~g~vp~~~~~r~~~ 141 (170)
T PRK05800 76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNEV------------GMGIVPEYRLGRHFR 141 (170)
T ss_pred CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcCC------------cccccCCCHHHHHHH
Confidence 233789998721 0 10 12222 222222 3455567776421 122333444445555
Q ss_pred HHhccCCCCCCCchHHHHHHHHhhhCCCCccchh
Q 036323 355 RFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAK 388 (583)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 388 (583)
..++ ..+..+...++++..-..|+|+-++
T Consensus 142 d~lG-----~lnq~la~~ad~V~~v~~Gi~~~lK 170 (170)
T PRK05800 142 DIAG-----RLNQQLAAAADEVYLVVAGLPLKLK 170 (170)
T ss_pred HHHH-----HHHHHHHHHCCEEEEEeCCCcEecC
Confidence 5542 1222344445555666678887653
No 216
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.69 E-value=0.0046 Score=57.09 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=59.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhc--C-------------cccccc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEG--S-------------AIDLHE 272 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~-------------~~~~~~ 272 (583)
..+++|.|..|+|||||++.+..-. ....+.+++.-. +.......+-..+.- + ....+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4589999999999999999998742 112223332211 111110001111100 0 001111
Q ss_pred HHHHHHHHHHHhcCCceeEEEcCCCcc-cccchHhhHHhhccCCCCceEEEecCchHHHh
Q 036323 273 LNSLLRRIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMNGLRGSKILITTRKETVAR 331 (583)
Q Consensus 273 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 331 (583)
-+...-.+...+-.++-++++|+.... |....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122223344555677889999997432 22223334444433234677888888876654
No 217
>PRK09354 recA recombinase A; Provisional
Probab=96.68 E-value=0.0062 Score=61.70 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=55.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCc-----cccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSA-----IDLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 280 (583)
+..+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++... ..+...++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 56789999999999999999888763 23334567899887776642 233333221 1123345555555
Q ss_pred HHHhc-CCceeEEEcCC
Q 036323 281 GANIA-GQKFFMVLDNL 296 (583)
Q Consensus 281 ~~~l~-~k~~LlVlDdv 296 (583)
...++ +..-+||+|.+
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 55543 45669999998
No 218
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.68 E-value=0.0098 Score=65.12 Aligned_cols=134 Identities=14% Similarity=0.106 Sum_probs=74.1
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
....++|....+.++.+.+..-. .....|.|+|..|+|||++|+.+++..... -...+.+++..... ..+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a-----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~~~--~~~~ 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA-----RSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAALSE--TLLE 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh-----CcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCCCH--HHHH
Confidence 45689999999999988876443 234467799999999999999998742211 11234445543211 2221
Q ss_pred HHHHHhhcCcccc-cc-HHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEec
Q 036323 258 ATIEELEGSAIDL-HE-LNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILITT 324 (583)
Q Consensus 258 ~il~~l~~~~~~~-~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTt 324 (583)
..+.+..... .. .......+ .....-.|+||++..-.......|...+..+. ...+||.||
T Consensus 265 ---~~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s 338 (534)
T TIGR01817 265 ---SELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338 (534)
T ss_pred ---HHHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeC
Confidence 1222211100 00 00000000 01234568999997665556666766664321 135788877
Q ss_pred Cc
Q 036323 325 RK 326 (583)
Q Consensus 325 R~ 326 (583)
..
T Consensus 339 ~~ 340 (534)
T TIGR01817 339 NR 340 (534)
T ss_pred CC
Confidence 54
No 219
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.67 E-value=0.036 Score=55.62 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=30.6
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++=.......+...+... +.|.|.|.+|+||||+|+.++..
T Consensus 46 ~y~f~~~~~~~vl~~l~~~---------~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD---------RRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred CccCCHHHHHHHHHHHhcC---------CcEEEEeCCCChHHHHHHHHHHH
Confidence 3444444566677777432 35889999999999999999873
No 220
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.025 Score=62.30 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=101.5
Q ss_pred CCceeechh---HHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 179 VSEVRGRDE---EMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 179 ~~~~vGR~~---e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
-.++.|-++ |++++++.|..+.-. -+..-++=+.++|++|+|||-||++++.... +-|+.++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH----
Confidence 346777764 566666667544200 0123466788999999999999999998533 334444432
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc---------------ccchHhhHHhhccCCC--
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD---------------YRKWEPFRNCLMNGLR-- 316 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~-- 316 (583)
+..+.+.+.. ...+.++...- -.+.++++.+|++.... ...++++..-+.....
T Consensus 379 ----EFvE~~~g~~--asrvr~lf~~a---r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGVG--ASRVRDLFPLA---RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhcccc--hHHHHHHHHHh---hccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2222222221 22222222221 24568899999874311 1123333333322222
Q ss_pred CceEEEecCchHHHhh--hcC---CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 317 GSKILITTRKETVARM--MES---TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 317 gs~IlvTtR~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
+..+|-+|+..++... +.+ ...+.++.-+..+..++|.-++-..... .+..++.+ |+..+-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHH
Confidence 2333445554444321 122 5678888888889999999887433222 23345555 888888877553
No 221
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0085 Score=67.31 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=73.9
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCC-CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQT-NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
..++|.++.+..|.+.+.....+-.+ .....+.+.|+.|+|||.||+.+... +-+..+..+-++.+.. ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------hh-
Confidence 46788888888888888765421112 25667889999999999999888762 3333344444554432 22
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCce-eEEEcCCCcccccchHhhHHhhc
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKF-FMVLDNLWTDDYRKWEPFRNCLM 312 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~ 312 (583)
...+.+.++.-.. .+....|.+.++.++| +|+||||...+......+...+.
T Consensus 633 -vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred -hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 3333333322111 1123356666677776 77799997766655555555553
No 222
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.65 E-value=0.0098 Score=60.58 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=33.9
Q ss_pred eeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 182 VRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 182 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
++|+...+.++.+.+..-. ....-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a-----~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-----PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-----CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4677777777777765443 23456789999999999999999864
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.64 E-value=0.0057 Score=57.28 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=50.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCcc---ccccHHHHH-HHHHH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSAI---DLHELNSLL-RRIGA 282 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~~~-~~l~~ 282 (583)
++++.++|+.|+||||.+.+++.....+ -..+..++... .....+.++...+.++.+.. ...+...+. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4689999999999998887776532222 33455566532 33556677777888775522 122223333 33433
Q ss_pred HhcCCceeEEEcCC
Q 036323 283 NIAGQKFFMVLDNL 296 (583)
Q Consensus 283 ~l~~k~~LlVlDdv 296 (583)
.-..+.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 32233348888876
No 224
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.62 E-value=0.016 Score=51.43 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=57.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
..+++|+|..|.|||||++.+.... ....+.+|++-.. .+.-.. +.+.-+...-.+...+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhcC
Confidence 4589999999999999999998732 2233444432100 000000 0111122222344555667
Q ss_pred ceeEEEcCCCc-ccccchHhhHHhhccCCCCceEEEecCchHHHh
Q 036323 288 KFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILITTRKETVAR 331 (583)
Q Consensus 288 ~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 331 (583)
+-++++|+... -|......+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 78999999743 2223344454444433 246788887765543
No 225
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.62 E-value=0.011 Score=60.26 Aligned_cols=59 Identities=17% Similarity=0.060 Sum_probs=41.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCcccc----ccCceEEEEEeCCCCChHHHHHHHHHHhhc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVRVCVSDPFDEFNVAKATIEELEG 265 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 265 (583)
....++-|+|.+|+|||+|+.+++-..... ..-..++|++....++...+.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 566789999999999999998876322221 1124689999998888777544 4555543
No 226
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.61 E-value=0.01 Score=53.87 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=62.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC--CChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP--FDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
..+++|.|..|+|||||.+.++.. .....+.+++.-..- .+..+... ..++-. .+.+.-+...-.+...+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 458999999999999999999873 223444555432111 11111111 011100 112222223334555566
Q ss_pred CCceeEEEcCCCc-ccccchHhhHHhhcc-CCCCceEEEecCchHHHh
Q 036323 286 GQKFFMVLDNLWT-DDYRKWEPFRNCLMN-GLRGSKILITTRKETVAR 331 (583)
Q Consensus 286 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IlvTtR~~~v~~ 331 (583)
.++-++++|+.-. -|......+...+.. ...|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7788999999743 222233344444432 233667888888766443
No 227
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.04 Score=59.53 Aligned_cols=162 Identities=15% Similarity=0.041 Sum_probs=85.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC--ChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF--DEFNVAKATIEELEGSAIDLHELNSLLRRIGANI 284 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (583)
...-|.|.|..|+|||+||+.+++... +++.-.+..++++.-. ....+++. +.....+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 455788999999999999999998644 4455556666665421 11111111 122333455
Q ss_pred cCCceeEEEcCCCc------ccccchHh----hHHhh----c-cCCCCc--eEEEecCchHHHh-hhcC----CCeEEcC
Q 036323 285 AGQKFFMVLDNLWT------DDYRKWEP----FRNCL----M-NGLRGS--KILITTRKETVAR-MMES----TDIVYVQ 342 (583)
Q Consensus 285 ~~k~~LlVlDdv~~------~~~~~~~~----l~~~l----~-~~~~gs--~IlvTtR~~~v~~-~~~~----~~~~~l~ 342 (583)
.-.+-+|||||++- .+..+|.. +...+ . ....+. .+|.|.....-.. .+.. ...+.|.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67899999999842 11122321 11111 1 122333 3455554432221 1111 3456788
Q ss_pred CCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCC-Cccchhhh
Q 036323 343 GLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKG-LPLAAKTI 390 (583)
Q Consensus 343 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~ 390 (583)
++...+-.++++... .... .....+...-+..+|+| .|.-+.++
T Consensus 572 ap~~~~R~~IL~~~~-s~~~---~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF-SKNL---SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHH-Hhhh---hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 888877777766543 2211 11112233447788876 45555544
No 228
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.008 Score=62.17 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...++.|+|++|+||||++..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988876
No 229
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.58 E-value=0.0072 Score=60.17 Aligned_cols=88 Identities=15% Similarity=0.082 Sum_probs=45.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC-ChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF-DEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
..++++|+|++|+||||++..++........-..+..++..... ...+.+....+.++.......+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 46799999999999999998887642222111234455543211 122333333333333322223334444444433 3
Q ss_pred CCceeEEEcCC
Q 036323 286 GQKFFMVLDNL 296 (583)
Q Consensus 286 ~k~~LlVlDdv 296 (583)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 2 347777753
No 230
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.56 E-value=0.0091 Score=54.42 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=74.4
Q ss_pred EEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcC--Cc
Q 036323 211 ISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAG--QK 288 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~--k~ 288 (583)
+.|.|.+|+|||++|.++... ....++++.-...++. ++...|.......+...... +....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~-E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTI-ETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEe-ecHHHHHHHHHhcCCC
Confidence 679999999999999988763 1234556655555543 34444443322222221111 112223333321 34
Q ss_pred eeEEEcCCCc--cc-----c--------cchHhhHHhhccCCCCceEEEecCchHHHhhhcCCCeEEcCCCChHHHHHHH
Q 036323 289 FFMVLDNLWT--DD-----Y--------RKWEPFRNCLMNGLRGSKILITTRKETVARMMESTDIVYVQGLSELECWSLF 353 (583)
Q Consensus 289 ~LlVlDdv~~--~~-----~--------~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf 353 (583)
-.+++|.+-. .+ . ..+..+...+. ..+..+|++|.. +-.+..+.+..-..|
T Consensus 75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnE------------vG~g~vp~~~~~r~f 140 (169)
T cd00544 75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNE------------VGLGVVPENALGRRF 140 (169)
T ss_pred CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECC------------cCCCCCCCCHHHHHH
Confidence 4799998721 10 0 01111222222 245556666642 113344455555666
Q ss_pred HHHhccCCCCCCCchHHHHHHHHhhhCCCCccc
Q 036323 354 RRFALSGRTPSECDQLEGIGRGIVRKCKGLPLA 386 (583)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 386 (583)
...++. .+..+...+++++.-..|+|+-
T Consensus 141 ~d~lG~-----lnq~la~~ad~v~~vv~Gip~~ 168 (169)
T cd00544 141 RDELGR-----LNQRLAALADEVYLVVSGIPLK 168 (169)
T ss_pred HHHHHH-----HHHHHHHHCCEEEEEECCccee
Confidence 665531 2223444455555666777764
No 231
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.52 E-value=0.0074 Score=61.48 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=71.7
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
..++|+...+.++.+.+..-. ....-|.|+|..|+||+++|+.++...... -...+.+++.... ...+...+
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a-----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~~-~~~~~~~l 77 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA-----PLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-ENLLDSEL 77 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCCC-HHHHHHHH
Confidence 358999998988888876543 234467899999999999999998632111 1223344555422 12112222
Q ss_pred HHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEecCc
Q 036323 260 IEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILITTRK 326 (583)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~ 326 (583)
+..-........ ......+. ....=.|+|||+..-.......|...+..+. ...+||.||..
T Consensus 78 fg~~~~~~~g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 78 FGHEAGAFTGAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccccCCcc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 111000000000 00001111 1233468899997655555666666664321 13678887764
No 232
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.50 E-value=0.014 Score=59.52 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=40.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCcccc---c-cCceEEEEEeCCCCChHHHHHHHHHHhh
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVI---N-NFEIRVRVCVSDPFDEFNVAKATIEELE 264 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (583)
....++-|+|.+|+|||+|+..++-..... + .-..++|++....++...+ .++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 457789999999999999998776432211 1 1136899999988887765 44555554
No 233
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.50 E-value=0.012 Score=59.50 Aligned_cols=58 Identities=17% Similarity=0.065 Sum_probs=39.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCcccc---c-cCceEEEEEeCCCCChHHHHHHHHHHhh
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVI---N-NFEIRVRVCVSDPFDEFNVAKATIEELE 264 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (583)
....++.|+|.+|+|||+|+..++...... + .-..++|++....++... +.++.+.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 457899999999999999998886522111 1 113578999887777665 334444443
No 234
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.50 E-value=0.02 Score=53.64 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=51.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh---
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI--- 284 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--- 284 (583)
-+++.|.|.+|+||||++..+...... .-..++++ ... ......+.+..+.. ...+..........-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~--~g~~v~~~-apT----~~Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEA--AGKRVIGL-APT----NKAAKELREKTGIE---AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHH--TT--EEEE-ESS----HHHHHHHHHHHTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHh--CCCeEEEE-CCc----HHHHHHHHHhhCcc---hhhHHHHHhcCCcccccc
Confidence 357889999999999999887763222 21222333 221 12222333333211 111111111000000
Q ss_pred ---cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc
Q 036323 285 ---AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK 326 (583)
Q Consensus 285 ---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~ 326 (583)
..+.-+||+|++.-.+...+..+...... .|+++|+.--.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 13346999999966555556555554433 47788776543
No 235
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.47 E-value=0.01 Score=58.00 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=51.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccC-ceEEEEEeCCCCC-hHHHHHHHHHHhhcC-------cccccc-----
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNF-EIRVRVCVSDPFD-EFNVAKATIEELEGS-------AIDLHE----- 272 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~----- 272 (583)
+.+-++|.|.+|+|||||++.+++. +..+| +.++++-+.+... ..++...+...-... ..+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4567889999999999999999984 44445 4455566655443 344444444321110 001100
Q ss_pred HHHHHHHHHHHh---cCCceeEEEcCC
Q 036323 273 LNSLLRRIGANI---AGQKFFMVLDNL 296 (583)
Q Consensus 273 ~~~~~~~l~~~l---~~k~~LlVlDdv 296 (583)
.....-.+.+++ +++.+||++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 111222344444 388999999998
No 236
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.47 E-value=0.016 Score=53.20 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=60.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCc---ccccc---Cc--eEEEEEeCCCCChHHHHHHHHHHhhcCcc-------ccc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDN---DVINN---FE--IRVRVCVSDPFDEFNVAKATIEELEGSAI-------DLH 271 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~-------~~~ 271 (583)
...+++|+|+.|+|||||.+.+..+. .+... |. .+.|+ .+ .+.+..++.... ..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34589999999999999999886321 11111 10 12222 11 344555543211 111
Q ss_pred cHHHHHHHHHHHhcCC--ceeEEEcCCCc-ccccchHhhHHhhcc-CCCCceEEEecCchHHHh
Q 036323 272 ELNSLLRRIGANIAGQ--KFFMVLDNLWT-DDYRKWEPFRNCLMN-GLRGSKILITTRKETVAR 331 (583)
Q Consensus 272 ~~~~~~~~l~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IlvTtR~~~v~~ 331 (583)
.-+...-.+...+-.+ +-++++|+.-. -+......+...+.. ...|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1122222344455556 77889998733 222233334444432 124677888888876654
No 237
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.47 E-value=0.027 Score=53.36 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCceeEEEcCCCc-ccccchHhhHHhhcc--CCCCceEEEecCchHHHhhh
Q 036323 274 NSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMN--GLRGSKILITTRKETVARMM 333 (583)
Q Consensus 274 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~~ 333 (583)
+.-.-.+.+.|-..+-+|+-|+--. -|...-+.+...+.. ...|..||+.|-++.++..+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 3334456667778888999997521 122222334444433 24577899999999998854
No 238
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.46 E-value=0.022 Score=59.29 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...++|+|++|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999998854
No 239
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.45 E-value=0.032 Score=50.81 Aligned_cols=115 Identities=12% Similarity=-0.008 Sum_probs=59.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEE-------EeCCCCCh--HHHHHHHHHHhhcCccccccHHHHHH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRV-------CVSDPFDE--FNVAKATIEELEGSAIDLHELNSLLR 278 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~ 278 (583)
..+++|+|..|.|||||++.+..-... ..+.+++ .+.+.... ..+...+.-. .....+.-+...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 458999999999999999999874211 1121111 12222211 1222222110 1112222233333
Q ss_pred HHHHHhcCCceeEEEcCCCc-ccccchHhhHHhhccCCCCceEEEecCchHHH
Q 036323 279 RIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILITTRKETVA 330 (583)
Q Consensus 279 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~ 330 (583)
.+...+-.++=++++|+--. -|......+...+... +..||++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 45555667788999998633 1222333344444332 35688888776554
No 240
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.035 Score=57.46 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=51.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCcccc--ccCceEEEEEeCCC-CChHHHHHHHHHHhhcCccccccHHHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVI--NNFEIRVRVCVSDP-FDEFNVAKATIEELEGSAIDLHELNSLLRRIGAN 283 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 283 (583)
..++|.++|+.|+||||.+..++...... .+-..+..+++... ....+.+....+.++.+.....+...+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46799999999999999998887632211 11123444444321 1223335555555554433333445555555443
Q ss_pred hcCCceeEEEcCCCc
Q 036323 284 IAGQKFFMVLDNLWT 298 (583)
Q Consensus 284 l~~k~~LlVlDdv~~ 298 (583)
.+.-++++|.+-.
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456899999843
No 241
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.43 E-value=0.023 Score=52.25 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=55.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEE------eCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVC------VSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIG 281 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 281 (583)
..+++|+|..|+|||||.+.+..-. ....+.+++. +.+... .+.-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 4599999999999999999988632 1222222221 111111 111122223344
Q ss_pred HHhcCCceeEEEcCCCcc-cccchHhhHHhhccC-CC-CceEEEecCchHHHh
Q 036323 282 ANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMNG-LR-GSKILITTRKETVAR 331 (583)
Q Consensus 282 ~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~IlvTtR~~~v~~ 331 (583)
..+..++-++++|+.-.. |......+...+... .. +..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 555667889999987431 222233333444321 12 356777777765544
No 242
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.023 Score=59.30 Aligned_cols=55 Identities=27% Similarity=0.347 Sum_probs=38.6
Q ss_pred Cceeech---hHHHHHHHHhhcCCC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccc
Q 036323 180 SEVRGRD---EEMRSIKSMLLCQGS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV 234 (583)
Q Consensus 180 ~~~vGR~---~e~~~l~~~L~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 234 (583)
.++-|-| .|+++|++.|..+.. .-+..-++-|.++|++|.|||-||+.++....+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 3455655 577888888865531 001234567889999999999999999985443
No 243
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.41 E-value=0.0064 Score=57.20 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=57.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQK 288 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 288 (583)
.++.|+|+.|+||||++..+... ...+....++. +.++... ........+.... -..+.....+.++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~--~~~~~~~~i~q~~-vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEF--VHESKRSLINQRE-VGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccc--cccCccceeeecc-cCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999887763 22222333332 2221110 0000000000000 01112234556677777778
Q ss_pred eeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHH
Q 036323 289 FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVA 330 (583)
Q Consensus 289 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~ 330 (583)
=++++|.+- +.+....+.. ....|..++.|+-...+.
T Consensus 76 d~ii~gEir--d~e~~~~~l~---~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMR--DLETIRLALT---AAETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCC--CHHHHHHHHH---HHHcCCEEEEEecCCcHH
Confidence 899999994 3333333222 223466677777655444
No 244
>PRK08233 hypothetical protein; Provisional
Probab=96.39 E-value=0.0092 Score=55.12 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+|+|.|.+|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999874
No 245
>PTZ00035 Rad51 protein; Provisional
Probab=96.38 E-value=0.024 Score=57.82 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=38.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCcccc---c-cCceEEEEEeCCCCChHHHHHHHHHHhh
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVI---N-NFEIRVRVCVSDPFDEFNVAKATIEELE 264 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (583)
....++.|+|.+|+|||+|+..++-..... . .-..++|++....++... +.++.+.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 567899999999999999998886432211 1 123567998877766665 334444443
No 246
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.38 E-value=0.013 Score=66.12 Aligned_cols=132 Identities=16% Similarity=0.148 Sum_probs=72.9
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
..++|+...+..+.+.+..-. ....-|.|+|..|+|||++|+.+++..... -...+.+++.... . ..+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a-----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~-~-~~~~~- 445 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA-----QSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP-A-GLLES- 445 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh-----CCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC-h-hHhhh-
Confidence 468999998888877765432 234468899999999999999998743211 1233444544321 1 11111
Q ss_pred HHHhhcCcccc--ccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEecCc
Q 036323 260 IEELEGSAIDL--HELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILITTRK 326 (583)
Q Consensus 260 l~~l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~ 326 (583)
.+.+..... .........+. ....=.|+|||+..-.......|...+.... .+.+||.||..
T Consensus 446 --~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 446 --DLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred --hhcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 122211100 00000111111 1234579999997655555666666663321 34588888764
No 247
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.36 E-value=0.039 Score=51.30 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcc-cccchHhhHHhhcc-CCCCceEEEecCchHHHhhh
Q 036323 276 LLRRIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMN-GLRGSKILITTRKETVARMM 333 (583)
Q Consensus 276 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~IlvTtR~~~v~~~~ 333 (583)
-.-.+.+.|.-++=++.||..-+. |++....+...+.. ...|-..|+.|-.-..|..+
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 333566667778889999998542 23333334333332 34577777778776666654
No 248
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.34 E-value=0.025 Score=57.76 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=57.1
Q ss_pred ceEEEEEEecCCchHH-HHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKT-TLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI 284 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKT-tLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (583)
+.++|.++|+.|+||| |||+..+......++ ..+..++... .....+-++...+-++.+-.-..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 4789999999999999 566655543211222 2344555433 22445556666666666644444555555554433
Q ss_pred cCCceeEEEcCCCcc--cccchHhhHHhhccC
Q 036323 285 AGQKFFMVLDNLWTD--DYRKWEPFRNCLMNG 314 (583)
Q Consensus 285 ~~k~~LlVlDdv~~~--~~~~~~~l~~~l~~~ 314 (583)
++. =+|.+|-+-.. |......+...+...
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 333 46667776432 222344455555443
No 249
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.013 Score=53.81 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=59.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhh---cCc---cc--------cccH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELE---GSA---ID--------LHEL 273 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~---~~~---~~--------~~~~ 273 (583)
..+++|+|..|.|||||.+.++... ....+.++++-....... ..+...+. ... .. .+.-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4589999999999999999998732 122333433211000000 00000010 000 00 1111
Q ss_pred HHHHHHHHHHhcCCceeEEEcCCCc-ccccchHhhHHhhccC-CCCceEEEecCchHHHh
Q 036323 274 NSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNG-LRGSKILITTRKETVAR 331 (583)
Q Consensus 274 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IlvTtR~~~v~~ 331 (583)
+...-.+...+..++=++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1222245556667888999999743 1222233344444321 23677888888876554
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.012 Score=60.51 Aligned_cols=88 Identities=10% Similarity=0.082 Sum_probs=49.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAG 286 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (583)
..++.++|+.|+||||++..+............+..++... .....+.+....+.++.......+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 46899999999999999988876321111123344554322 2234455555555555443222222333333333 344
Q ss_pred CceeEEEcCCC
Q 036323 287 QKFFMVLDNLW 297 (583)
Q Consensus 287 k~~LlVlDdv~ 297 (583)
+ -++++|..-
T Consensus 216 ~-DlVLIDTaG 225 (374)
T PRK14722 216 K-HMVLIDTIG 225 (374)
T ss_pred C-CEEEEcCCC
Confidence 4 566799884
No 251
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.31 E-value=0.029 Score=56.85 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=39.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccc----cCceEEEEEeCCCCChHHHHHHHHHHh
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVIN----NFEIRVRVCVSDPFDEFNVAKATIEEL 263 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (583)
....++-|+|.+|+|||+|+.+++....... .-..++|++....++...+. ++++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 4578999999999999999988875422211 11268999998887776544 344443
No 252
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.31 E-value=0.017 Score=53.06 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=58.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC--CCChHHHHHHHHHHhhc--Cccc----------cccH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD--PFDEFNVAKATIEELEG--SAID----------LHEL 273 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~--~~~~----------~~~~ 273 (583)
..+++|+|..|+|||||.+.++.-. ....+.++++-.. ....... ...+.- +... .+.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 4589999999999999999998631 2222333322110 0011111 111110 0000 1111
Q ss_pred HHHHHHHHHHhcCCceeEEEcCCCc-ccccchHhhHHhhcc-CCCCceEEEecCchHHHh
Q 036323 274 NSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMN-GLRGSKILITTRKETVAR 331 (583)
Q Consensus 274 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IlvTtR~~~v~~ 331 (583)
+...-.+...+-.++-++++|+... -|......+...+.. ...|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1222234445566777999999743 222223334444432 123667888888776554
No 253
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.27 E-value=0.014 Score=59.71 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=63.3
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHH
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATI 260 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (583)
.++|+++.+..+...+.... -+.+.|.+|+|||+||+.+... .. ....++.+.......++.....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~---------~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG---------HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC---------CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchh
Confidence 37888888888877776543 6789999999999999999873 22 2334556666555554433222
Q ss_pred HHhh---cCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhh
Q 036323 261 EELE---GSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCL 311 (583)
Q Consensus 261 ~~l~---~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l 311 (583)
-... .......+ .-+ ..+-+.++++|.++...+.....+...+
T Consensus 91 ~~~~~~~~~~~~~~~-gpl-------~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 91 YAALLLEPGEFRFVP-GPL-------FAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred HhhhhccCCeEEEec-CCc-------ccccceEEEEeccccCCHHHHHHHHHHH
Confidence 1111 00000000 000 0011159999999876655555555554
No 254
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.27 E-value=0.092 Score=52.97 Aligned_cols=49 Identities=27% Similarity=0.167 Sum_probs=34.1
Q ss_pred eEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 338 IVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 338 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
++++++++.+|+..++..+.-.+.... ....+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999998764433221 1222445666777779998643
No 255
>PRK07667 uridine kinase; Provisional
Probab=96.27 E-value=0.0054 Score=57.45 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~-----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK-----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC-----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665443 45689999999999999999998773
No 256
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.26 E-value=0.0042 Score=66.22 Aligned_cols=49 Identities=27% Similarity=0.330 Sum_probs=39.1
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+++|.++.+++|++.|.... .+-....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa-~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAA-QGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHH-HhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 58999999999999993221 01124567999999999999999999876
No 257
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.25 E-value=0.022 Score=61.28 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=42.6
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEE
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVC 245 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 245 (583)
.+++--.+-++++..||...- .+....+++.+.|++|+||||.++.+++.. .|+..=|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~--~~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMF--SGSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHh--ccCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 345555667888999987532 122346699999999999999999998742 355555654
No 258
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.14 Score=51.29 Aligned_cols=134 Identities=9% Similarity=0.025 Sum_probs=78.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCc--------cccccCceEEEEEe-CCCCChHHHHHHHHHHhhcCccccccHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDN--------DVINNFEIRVRVCV-SDPFDEFNVAKATIEELEGSAIDLHELNSLL 277 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 277 (583)
-.++..++|..|.||+++|..+.+.. ....|-+...+++. .......++ +++.+.+...+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC----------
Confidence 45677899999999999998876531 01111112223321 111111111 12222221110
Q ss_pred HHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hHHHhh-hcCCCeEEcCCCChHHHHHHHHH
Q 036323 278 RRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ETVARM-MESTDIVYVQGLSELECWSLFRR 355 (583)
Q Consensus 278 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~ 355 (583)
.-.+.+=++|+|++...+....+.|...+...+.++.+|++|.+ ..+... ......+++.+++.++....+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 00146778999998665555677788888776677777765544 344433 23377899999999998877765
Q ss_pred H
Q 036323 356 F 356 (583)
Q Consensus 356 ~ 356 (583)
.
T Consensus 161 ~ 161 (299)
T PRK07132 161 K 161 (299)
T ss_pred c
Confidence 3
No 259
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.24 E-value=0.023 Score=59.73 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=45.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCccc---cccHHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSAID---LHELNSLLRRIGA 282 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~~ 282 (583)
.+.+|.++|.+|+||||++..++..... ..+ .+.-+++.. .....+.+..+...++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4679999999999999999888764322 223 233333322 112344455555555433111 1222222222222
Q ss_pred HhcCCceeEEEcCC
Q 036323 283 NIAGQKFFMVLDNL 296 (583)
Q Consensus 283 ~l~~k~~LlVlDdv 296 (583)
.+.+. -++|+|..
T Consensus 172 ~~~~~-DvVIIDTA 184 (437)
T PRK00771 172 KFKKA-DVIIVDTA 184 (437)
T ss_pred HhhcC-CEEEEECC
Confidence 22333 56777776
No 260
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.022 Score=55.94 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=57.9
Q ss_pred CCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHH-hhc---C-ccccccHHHHHHH
Q 036323 205 TNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEE-LEG---S-AIDLHELNSLLRR 279 (583)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l~~---~-~~~~~~~~~~~~~ 279 (583)
-+..+++=|+|+.|+||||||.+++-. .+..-..++|++..+.+++..+.. +... +.. . +.....-..+...
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 367889999999999999999887653 333444789999999888775433 3333 221 1 1222223334444
Q ss_pred HHHHhcCCceeEEEcCC
Q 036323 280 IGANIAGQKFFMVLDNL 296 (583)
Q Consensus 280 l~~~l~~k~~LlVlDdv 296 (583)
+......+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444444669999998
No 261
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.21 E-value=0.031 Score=58.88 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=45.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC-ChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF-DEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAG 286 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (583)
.+++.++|++|+||||++..++........-..+..++....- ...+.+....+.++.+.....+...+...+... .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999988776532201222345555543211 111223333333333322223334455555432 2
Q ss_pred CceeEEEcCC
Q 036323 287 QKFFMVLDNL 296 (583)
Q Consensus 287 k~~LlVlDdv 296 (583)
..=+|++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3468899976
No 262
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.21 E-value=0.019 Score=53.21 Aligned_cols=37 Identities=24% Similarity=0.143 Sum_probs=26.1
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD 248 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 248 (583)
++.|.|.+|+|||+|+.++..... ..=..++|++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC
Confidence 367999999999999988766321 2224467777654
No 263
>PRK05439 pantothenate kinase; Provisional
Probab=96.20 E-value=0.021 Score=57.08 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCceEEEEEEecCCchHHHHHHHHHc
Q 036323 205 TNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+.+-+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999988766
No 264
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.15 E-value=0.017 Score=62.63 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=74.9
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
...++|+...++++.+.+..-. ....-|.|+|..|+|||++|+.+++..... -...+.+++..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a-----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~--~~~e- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA-----ASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPE--SLAE- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh-----CCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCCh--HHHH-
Confidence 5678999999999988886544 334578899999999999999998742211 12334455554321 1111
Q ss_pred HHHHhhcCcccc--ccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEecC
Q 036323 259 TIEELEGSAIDL--HELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILITTR 325 (583)
Q Consensus 259 il~~l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR 325 (583)
..+.+..... .........+. ....=.|+||++..-.......|...+..+. .+.+||.||.
T Consensus 256 --~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 256 --SELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred --HHhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 1222211100 00000000011 1223357999997665555666666664321 2458888876
Q ss_pred c
Q 036323 326 K 326 (583)
Q Consensus 326 ~ 326 (583)
.
T Consensus 331 ~ 331 (509)
T PRK05022 331 R 331 (509)
T ss_pred C
Confidence 4
No 265
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.14 E-value=0.037 Score=53.64 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=33.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
+...++.|.|.+|+|||+||.++... ....-..++|++... +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 56789999999999999999887552 112345577887654 34444443
No 266
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.13 E-value=0.042 Score=55.83 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=39.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCcccccc----CceEEEEEeCCCCChHHHHHHHHHHh
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINN----FEIRVRVCVSDPFDEFNVAKATIEEL 263 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l 263 (583)
+...++-|+|.+|+|||+|+.+++........ =..++|++....++...+.+ +++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 45779999999999999999888754222111 14789999988777766543 34444
No 267
>PRK14974 cell division protein FtsY; Provisional
Probab=96.12 E-value=0.04 Score=55.92 Aligned_cols=89 Identities=21% Similarity=0.147 Sum_probs=45.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC--ChHHHHHHHHHHhhcCcc---ccccHHH-HHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF--DEFNVAKATIEELEGSAI---DLHELNS-LLRRI 280 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~---~~~~~~~-~~~~l 280 (583)
++.++.++|++|+||||++..++.... ...+. ++.+.. +.+ ...+.+......++.... ...+... +...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998877775321 12232 333332 222 223344555555543311 1112222 22333
Q ss_pred HHHhcCCceeEEEcCCCc
Q 036323 281 GANIAGQKFFMVLDNLWT 298 (583)
Q Consensus 281 ~~~l~~k~~LlVlDdv~~ 298 (583)
........-++++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 322222233899998843
No 268
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.063 Score=50.89 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=32.8
Q ss_pred HHHHHhcCCceeEEEcCCCcc-cccchHhhHHhhcc--CCCCceEEEecCchHHHhhhc
Q 036323 279 RIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMN--GLRGSKILITTRKETVARMME 334 (583)
Q Consensus 279 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~~~ 334 (583)
.+.+.|.-++=+||+|..-+. |......+...|.. ...+-.+|+.|-+-.+...++
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 455667778889999997432 11122223333322 344667888888877666543
No 269
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.10 E-value=0.024 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999977644
No 270
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.10 E-value=0.042 Score=52.96 Aligned_cols=50 Identities=18% Similarity=0.054 Sum_probs=30.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
+...++.|.|.+|+||||||.+++... .+.. ..+++++... +..++.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 345699999999999999986665431 1222 3345665332 344555554
No 271
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.05 E-value=0.019 Score=54.93 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+|+|.|.+|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 272
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.05 E-value=0.058 Score=51.95 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=29.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD 248 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 248 (583)
+...++.|.|.+|+|||+|+..+.... ...-..++|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 456799999999999999998876431 12234677887644
No 273
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.03 E-value=0.048 Score=52.94 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=18.4
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+..|+|++|+|||+|+..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999988765
No 274
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.02 E-value=0.068 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|+|||||.+.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 275
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.02 E-value=0.0047 Score=53.32 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 036323 211 ISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~ 231 (583)
|.|.|.+|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998874
No 276
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.98 E-value=0.067 Score=59.70 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=79.7
Q ss_pred CceeechhHHHHHHHHhhcCCCC-----CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD-----QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFN 254 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (583)
..+.|-+...+++.+.+...... ....-.+-|.|+|++|+|||++|+.+++.. ...| +.++.++
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------
Confidence 35667666555555443221100 001123348899999999999999998742 2222 1222211
Q ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc----------ccchHhhHHhh----cc--CCCCc
Q 036323 255 VAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRKWEPFRNCL----MN--GLRGS 318 (583)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~l~~~l----~~--~~~gs 318 (583)
+ .....+. ....+...+.......+++|+||+++.-. ...+......+ .. ...+.
T Consensus 221 ~----~~~~~g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 F----VEMFVGV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred h----HHhhhcc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1 1111100 01112222233334578999999985421 01122222222 11 22345
Q ss_pred eEEEecCchHHHhh--hc---CCCeEEcCCCChHHHHHHHHHHhc
Q 036323 319 KILITTRKETVARM--ME---STDIVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 319 ~IlvTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
.+|.||..++.... .. -...+.+...+.++-.+++..+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 55667766543221 11 146778888888888888877653
No 277
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.013 Score=55.01 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=43.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHh--hcCccccccHHHHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEEL--EGSAIDLHELNSLLRRIGAN 283 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l--~~~~~~~~~~~~~~~~l~~~ 283 (583)
.++.+|+|.|.+|+||||+|+.++.. ...+. +.-++....+...+. ....... .-..+...+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk~~~~-~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYKDQSH-LPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeeccccccchhh-cCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45789999999999999999999883 22221 111221111110000 0000011 11123455677777888888
Q ss_pred hcCCc
Q 036323 284 IAGQK 288 (583)
Q Consensus 284 l~~k~ 288 (583)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 87777
No 278
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.97 E-value=0.07 Score=52.85 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=36.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELE 264 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (583)
...++.|.|.+|+||||++.+++.+.. ..+-..++|+++.. +..++...+...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 345888999999999999988876421 22134577887655 34556666655443
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0057 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|.|.|++|+|||||++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456889999999999999999874
No 280
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.022 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.061 Score=54.95 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=53.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC-CChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP-FDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI 284 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (583)
...+++.|+|+.|+||||++..++..... .-..+.+++.... ....+.++...+.++.+.....+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~--~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLK--QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 45789999999999999999888764211 1123555665332 22344555555555543222344455555554332
Q ss_pred c-CCceeEEEcCCCc
Q 036323 285 A-GQKFFMVLDNLWT 298 (583)
Q Consensus 285 ~-~k~~LlVlDdv~~ 298 (583)
. +..=++++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3446888998743
No 282
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.91 E-value=0.014 Score=58.57 Aligned_cols=84 Identities=20% Similarity=0.098 Sum_probs=51.3
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (583)
+..+++-|+|+.|+||||||..+... .+..-..++|++..+.++.. .++.++.... .+...++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 45679999999999999999888763 33445668999988776653 3344443321 123345555555
Q ss_pred HHHhcCC-ceeEEEcCC
Q 036323 281 GANIAGQ-KFFMVLDNL 296 (583)
Q Consensus 281 ~~~l~~k-~~LlVlDdv 296 (583)
..+++.. .-++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 5555443 458899988
No 283
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.90 E-value=0.093 Score=49.62 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|.|..|+|||||++.+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999875
No 284
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.052 Score=58.30 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=35.9
Q ss_pred CceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++=|-++-..+|.+....+-.. -+-..++-|.++|+||+|||++|+.+.+.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 34555777777776655433200 01245778889999999999999999983
No 285
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.88 E-value=0.0066 Score=53.62 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 286
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.88 E-value=0.05 Score=49.80 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999888763
No 287
>PRK10867 signal recognition particle protein; Provisional
Probab=95.86 E-value=0.029 Score=58.92 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=20.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998876655
No 288
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.86 E-value=0.029 Score=58.87 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+.++.++|.+|+||||+|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999998777653
No 289
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.051 Score=58.95 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=73.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHH-HHHHHHHHh
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNS-LLRRIGANI 284 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l 284 (583)
...+.+.++|++|.|||.||+.+++. ...+|-. +... .++... ....+. +........
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~-----v~~~--------~l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFIS-----VKGS--------ELLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEE-----eeCH--------HHhccc------cchHHHHHHHHHHHHH
Confidence 44568999999999999999999983 3333422 2111 111100 011111 222233333
Q ss_pred cCCceeEEEcCCCc-----c-c-c----cchHhhHHhhcc--CCCCceEEEecCchHHHhh--h---cCCCeEEcCCCCh
Q 036323 285 AGQKFFMVLDNLWT-----D-D-Y----RKWEPFRNCLMN--GLRGSKILITTRKETVARM--M---ESTDIVYVQGLSE 346 (583)
Q Consensus 285 ~~k~~LlVlDdv~~-----~-~-~----~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~--~---~~~~~~~l~~L~~ 346 (583)
+..+++|++|.+.. . + . .....+...+.. ...+..||-||..+..... . .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 57899999999843 1 0 0 122333333322 2334445555554433221 1 1256788999999
Q ss_pred HHHHHHHHHHhc
Q 036323 347 LECWSLFRRFAL 358 (583)
Q Consensus 347 ~ea~~Lf~~~a~ 358 (583)
++..+.|+.+..
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
No 290
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.037 Score=58.95 Aligned_cols=89 Identities=16% Similarity=0.053 Sum_probs=45.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
...+++|+|.+|+||||++..+............+..++... .....+.+......++.......+...+...+... .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 457999999999999999988765321111122344444321 11122223333333332222223334444444432 3
Q ss_pred CCceeEEEcCCC
Q 036323 286 GQKFFMVLDNLW 297 (583)
Q Consensus 286 ~k~~LlVlDdv~ 297 (583)
..-+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588899873
No 291
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.84 E-value=0.087 Score=47.84 Aligned_cols=119 Identities=18% Similarity=0.036 Sum_probs=61.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceE--EEEEeCCCCChHHHHHHHHHH---hhcC-----cccc---ccHH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIR--VRVCVSDPFDEFNVAKATIEE---LEGS-----AIDL---HELN 274 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~il~~---l~~~-----~~~~---~~~~ 274 (583)
...|-|++..|.||||.|..+.-.. ....+.+. =|+.-.........+..+.-. .+.. .+.. ....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 3577788889999999996665421 11222221 123322222333343332000 0000 0001 1122
Q ss_pred HHHHHHHHHhcCCc-eeEEEcCCCc---ccccchHhhHHhhccCCCCceEEEecCch
Q 036323 275 SLLRRIGANIAGQK-FFMVLDNLWT---DDYRKWEPFRNCLMNGLRGSKILITTRKE 327 (583)
Q Consensus 275 ~~~~~l~~~l~~k~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 327 (583)
......++.+...+ =|||||.+-. ...-..+.+...+...+.+.-||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 33344445554444 4999999832 11223456667676667788999999975
No 292
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.82 E-value=0.0065 Score=56.96 Aligned_cols=22 Identities=45% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 293
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.047 Score=52.63 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHHHHHhcCCceeEEEcCCCc-cccc---chHhhHHhhccCCCCceEEEecCchHHHh
Q 036323 278 RRIGANIAGQKFFMVLDNLWT-DDYR---KWEPFRNCLMNGLRGSKILITTRKETVAR 331 (583)
Q Consensus 278 ~~l~~~l~~k~~LlVlDdv~~-~~~~---~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 331 (583)
-.|.+.|..++=||+||.-.. -|.. ..-.+...+... |+.||++|-+-....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~ 203 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhH
Confidence 356667788899999998532 1222 223333333332 889999999866544
No 294
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.17 Score=50.14 Aligned_cols=59 Identities=8% Similarity=0.058 Sum_probs=39.6
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc-hHHHhhh-cCCCeEEcCCC
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK-ETVARMM-ESTDIVYVQGL 344 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~~~~-~~~~~~~l~~L 344 (583)
++.-++|+|+++..+.+.++.++..+.....++.+|++|.+ ..+.... +....+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45568999999877777888888888776667766666665 4443332 22456666655
No 295
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.81 E-value=0.09 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|+|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999998753
No 296
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.80 E-value=0.055 Score=51.25 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=35.5
Q ss_pred HHHhcCCceeEEEcCCCc-ccccchHhhHHhhcc-CCCCceEEEecCchHHHhhhcCCCeEEcCCC
Q 036323 281 GANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMN-GLRGSKILITTRKETVARMMESTDIVYVQGL 344 (583)
Q Consensus 281 ~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L 344 (583)
...+-.++-++++|+.-. -|......+...+.. ...|..||++|.+...... .+.+.+..+
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 344455678999998743 222233444444432 2246678888887665543 566666553
No 297
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.78 E-value=0.071 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999763
No 298
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.78 E-value=0.0079 Score=57.02 Aligned_cols=26 Identities=38% Similarity=0.477 Sum_probs=23.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+...+|+|+|++|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999863
No 299
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.77 E-value=0.067 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998874
No 300
>PTZ00301 uridine kinase; Provisional
Probab=95.76 E-value=0.015 Score=55.11 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999988865
No 301
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.74 E-value=0.0099 Score=58.72 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 190 RSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 190 ~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++.+... .+-+.++|++|+|||++++...+.
T Consensus 23 ~~ll~~l~~~--------~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSN--------GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHC--------TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHc--------CCcEEEECCCCCchhHHHHhhhcc
Confidence 4555555543 346689999999999999998864
No 302
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.74 E-value=0.008 Score=57.08 Aligned_cols=26 Identities=38% Similarity=0.578 Sum_probs=23.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+..+|+|.|.+|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999998874
No 303
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.71 E-value=0.043 Score=53.91 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=29.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD 248 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 248 (583)
+...++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 4567999999999999999988765311 1223567777754
No 304
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.12 Score=49.78 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|+|||||.+.+..-
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999763
No 305
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.13 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3469999999999999999998764
No 306
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.68 E-value=0.13 Score=50.76 Aligned_cols=114 Identities=15% Similarity=0.052 Sum_probs=58.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCc-c------cc-ccHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSA-I------DL-HELNSLLR 278 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-~------~~-~~~~~~~~ 278 (583)
...-++|+|..|+|||||.+.+.... ......+++.-.+ ....+...++......-+ . +. .+... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEE-eecchhHHHHHHHhcccccccccccccccccchH-HH
Confidence 35789999999999999999998742 2223333332111 000011122222211110 0 00 01111 11
Q ss_pred HHHHHh-cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHH
Q 036323 279 RIGANI-AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVA 330 (583)
Q Consensus 279 ~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~ 330 (583)
.+...+ ...+=++++|.+- ..+.+..+...+ ..|..+|+||-+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIG--REEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 122222 2478899999983 333444444444 2477899999876554
No 307
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.017 Score=53.06 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999884
No 308
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.66 E-value=0.0075 Score=45.94 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
++.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988874
No 309
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.66 E-value=0.092 Score=56.35 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=68.8
Q ss_pred eEEEEEEecCCchHHH-HHHHHHcCccccccC--ceEEEEEeCCCCChHHHHHHHHHHhhcCcc----------cc----
Q 036323 208 VQIISMVGMGGIGKTT-LAQLAYNDNDVINNF--EIRVRVCVSDPFDEFNVAKATIEELEGSAI----------DL---- 270 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----------~~---- 270 (583)
..||.|+|..|+|||| |++.+|.+ .| .+.+-.+-........+.+.+.+.++..-. +.
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4599999999999995 67777774 22 122222223333445667777777754311 00
Q ss_pred ------ccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhh---ccCCCCceEEEecCc---hHHHhhhcCCCe
Q 036323 271 ------HELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCL---MNGLRGSKILITTRK---ETVARMMESTDI 338 (583)
Q Consensus 271 ------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l---~~~~~gs~IlvTtR~---~~v~~~~~~~~~ 338 (583)
.+---+.+.|.+..-.|=-.||+|.+++... .-+.+...| ......-++||||-. ...+..++....
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~ 524 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQ 524 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCce
Confidence 1111233334443334556899999965322 112222222 233457899999875 445555554333
Q ss_pred EE
Q 036323 339 VY 340 (583)
Q Consensus 339 ~~ 340 (583)
+.
T Consensus 525 f~ 526 (1042)
T KOG0924|consen 525 FT 526 (1042)
T ss_pred ee
Confidence 33
No 310
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.66 E-value=0.13 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|.|..|.|||||.+.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999863
No 311
>PRK06762 hypothetical protein; Provisional
Probab=95.66 E-value=0.0082 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+.+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 312
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.66 E-value=0.011 Score=57.46 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHH
Q 036323 190 RSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIE 261 (583)
Q Consensus 190 ~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (583)
.+|+..+... .++..+|+|.|.||+|||||...+.......++--.++=|+-|++++--.++-+=++
T Consensus 38 ~~ll~~l~p~-----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPR-----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhc-----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 4556566443 367889999999999999999888775545555556666777777776666554443
No 313
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.038 Score=49.70 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=61.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
..+++|+|..|.|||||.+.+.... ......+++......... .......+.-.. +.+.-+...-.+...+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYVP-QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEEe-eCCHHHHHHHHHHHHHhcC
Confidence 3689999999999999999998732 233444444322111100 001111111100 0111122223345555667
Q ss_pred ceeEEEcCCCc-ccccchHhhHHhhcc-CCCCceEEEecCchHHHhh
Q 036323 288 KFFMVLDNLWT-DDYRKWEPFRNCLMN-GLRGSKILITTRKETVARM 332 (583)
Q Consensus 288 ~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IlvTtR~~~v~~~ 332 (583)
+-++++|+... -|......+...+.. ...+..+|++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 88999999743 122223334443432 1125678888887766554
No 314
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.64 E-value=0.043 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.3
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....+++|.|++|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988863
No 315
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.13 Score=49.74 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=31.9
Q ss_pred HHHHhcCCceeEEEcCCCc-ccccchHhhHHhhccCCCCceEEEecCchHHHhh
Q 036323 280 IGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILITTRKETVARM 332 (583)
Q Consensus 280 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~ 332 (583)
+...+-.++-+|+||+... -|......+...+.....|..||++|.+......
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 4445566788999999743 2222334455555432236678888887766543
No 316
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.61 E-value=0.018 Score=54.83 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999988863
No 317
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.61 E-value=0.084 Score=48.45 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...++.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999998874
No 318
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.61 E-value=0.12 Score=49.49 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|+.|+|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999998763
No 319
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.59 E-value=0.016 Score=50.23 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCc
Q 036323 187 EEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDN 232 (583)
Q Consensus 187 ~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 232 (583)
++..++-+.|...- ....+|.+.|.-|+||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l-----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL-----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC-----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555554322 234589999999999999999998753
No 320
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.58 E-value=0.017 Score=55.39 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHH
Q 036323 188 EMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVA 256 (583)
Q Consensus 188 e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (583)
+..++++.+.... ++..+|+|.|+||+|||||...+....+..++=-.++=|+-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~-----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHT-----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGT-----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhc-----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 4556666665433 457899999999999999998887643333333345555555555544433
No 321
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.57 E-value=0.11 Score=49.00 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.++.-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999763
No 322
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.57 E-value=0.093 Score=48.39 Aligned_cols=118 Identities=17% Similarity=0.012 Sum_probs=62.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC---CCChHHHHHHHH--HH--hhcC-----cccc---cc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD---PFDEFNVAKATI--EE--LEGS-----AIDL---HE 272 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il--~~--l~~~-----~~~~---~~ 272 (583)
...|.|+|..|-||||.|..+.-. ...+=..+..+..-. .......+..+- .- .+.. .... ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 468889999999999999665442 111111222222221 223333333210 00 0000 0011 11
Q ss_pred HHHHHHHHHHHhcCCc-eeEEEcCCCc---ccccchHhhHHhhccCCCCceEEEecCch
Q 036323 273 LNSLLRRIGANIAGQK-FFMVLDNLWT---DDYRKWEPFRNCLMNGLRGSKILITTRKE 327 (583)
Q Consensus 273 ~~~~~~~l~~~l~~k~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 327 (583)
........++.+...+ =|||||.+-. ...-..+.+...+...+.+.-||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 2233444455554444 4999999832 11224556777776667788999999975
No 323
>PRK04328 hypothetical protein; Provisional
Probab=95.56 E-value=0.05 Score=53.12 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=30.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP 249 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 249 (583)
+...++.|.|.+|+|||+|+.++... ....-...+|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 45779999999999999999887653 1122345678877653
No 324
>PRK06547 hypothetical protein; Provisional
Probab=95.55 E-value=0.017 Score=52.93 Aligned_cols=26 Identities=31% Similarity=0.311 Sum_probs=23.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999774
No 325
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.17 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999998753
No 326
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.54 E-value=0.015 Score=51.96 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=25.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEE
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVC 245 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 245 (583)
..+|-|+|.+|+||||||+.+.+. ....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999874 333333445554
No 327
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.52 E-value=0.063 Score=53.06 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=47.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh--HHHHHHHHHHhhcCc---cccccH-HHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE--FNVAKATIEELEGSA---IDLHEL-NSLLRR 279 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~---~~~~~~-~~~~~~ 279 (583)
...+++.++|++|+||||++..++... ...-..+.+++... +.. .+-+....+..+... ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 346899999999999999998887632 22223455555432 221 233333444443221 011122 222333
Q ss_pred HHHHhcCCceeEEEcCCC
Q 036323 280 IGANIAGQKFFMVLDNLW 297 (583)
Q Consensus 280 l~~~l~~k~~LlVlDdv~ 297 (583)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444334445588889873
No 328
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.52 E-value=0.08 Score=52.04 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=45.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC-ChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc-
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF-DEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA- 285 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~- 285 (583)
..+++++|.+|+||||++..+.... ...-..+.+++..... .....+....+.++.......+...+...+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 4689999999999999998876532 1111234445443221 12222233333333221122333444444433212
Q ss_pred CCceeEEEcCCCc
Q 036323 286 GQKFFMVLDNLWT 298 (583)
Q Consensus 286 ~k~~LlVlDdv~~ 298 (583)
.+.=++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 2456889998743
No 329
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.48 E-value=0.11 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|.|..|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 330
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.47 E-value=0.028 Score=52.96 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=57.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcccc-------ccHHHHHHHH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDL-------HELNSLLRRI 280 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-------~~~~~~~~~l 280 (583)
.+++.|.|+.|.||||+.+.+.... +..+. ..++.... ....+...++..+....... .+..++.. +
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~-i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAY-I 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHH-H
Confidence 4789999999999999998875421 11111 11111110 01122223333332221110 01112211 1
Q ss_pred HHHhcCCceeEEEcCCCccc-ccc----hHhhHHhhccCCCCceEEEecCchHHHhhhc
Q 036323 281 GANIAGQKFFMVLDNLWTDD-YRK----WEPFRNCLMNGLRGSKILITTRKETVARMME 334 (583)
Q Consensus 281 ~~~l~~k~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~ 334 (583)
.. +..++-|+++|...... ..+ ...+...+.. .|+.+|++|-....+..+.
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 11 23567899999974321 111 1122333332 3788999999988876554
No 331
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.47 E-value=0.036 Score=49.42 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
++.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998773
No 332
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.46 E-value=0.18 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|..|+|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999875
No 333
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.45 E-value=0.051 Score=60.81 Aligned_cols=85 Identities=18% Similarity=0.099 Sum_probs=55.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (583)
+..+++-|.|.+|+|||||+.+++.. ....-..++|++..+.++.. .+++++.... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 55789999999999999999776552 22223457898887766632 4555554321 223345555555
Q ss_pred HHHhc-CCceeEEEcCCC
Q 036323 281 GANIA-GQKFFMVLDNLW 297 (583)
Q Consensus 281 ~~~l~-~k~~LlVlDdv~ 297 (583)
...++ ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 356699999984
No 334
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.45 E-value=0.067 Score=55.28 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=49.3
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (583)
....++.|.|.+|+|||||+.+++.. ....-..++|++.... ...+ ..-+..++.... ...+.+.+.+.+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 34579999999999999999988763 2222245677765432 2222 222334433221 123344444444
Q ss_pred HHHhcCCceeEEEcCCC
Q 036323 281 GANIAGQKFFMVLDNLW 297 (583)
Q Consensus 281 ~~~l~~k~~LlVlDdv~ 297 (583)
. ..+.-+||+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 3 2466789999983
No 335
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.45 E-value=0.034 Score=60.50 Aligned_cols=135 Identities=16% Similarity=0.057 Sum_probs=70.5
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-..++|....+.++.+.+..-. .....|.|+|..|+||+.||+.++..... .-...+.+++..-. ...+.
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A-----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r--~~~pfv~inca~~~--~~~~e- 272 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLA-----MLDAPLLITGDTGTGKDLLAYACHLRSPR--GKKPFLALNCASIP--DDVVE- 272 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHh-----CCCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeccccCC--HHHHH-
Confidence 3468999988888877764322 12334779999999999999998753211 11223445554432 12221
Q ss_pred HHHHhhcCcccc-ccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEecCc
Q 036323 259 TIEELEGSAIDL-HELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILITTRK 326 (583)
Q Consensus 259 il~~l~~~~~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~ 326 (583)
..+.+..... ........-+.+ ....=.|+||+++.-.......|...+..+. ...+||.||..
T Consensus 273 --~elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 273 --SELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred --HHhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 1222211100 000000000000 1223457899997655555566666664321 13478887764
Q ss_pred h
Q 036323 327 E 327 (583)
Q Consensus 327 ~ 327 (583)
.
T Consensus 349 ~ 349 (520)
T PRK10820 349 N 349 (520)
T ss_pred C
Confidence 3
No 336
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.42 E-value=0.18 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|+|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998763
No 337
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.40 E-value=0.016 Score=55.72 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|.|.|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999998773
No 338
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.40 E-value=0.11 Score=58.30 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....|+|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999854
No 339
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.39 E-value=0.13 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|.|||||.+.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999988753
No 340
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.38 E-value=0.081 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|..|+|||||.+.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999975
No 341
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.13 Score=48.67 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+++|+|..|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999975
No 342
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.37 E-value=0.1 Score=50.03 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=30.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP 249 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 249 (583)
+...++.|.|.+|+|||++|.+++.. ....=..+++++....
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~--~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQ--GLKNGEKAMYISLEER 55 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCC
Confidence 45679999999999999999888753 1122245677777653
No 343
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.036 Score=48.94 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=32.0
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGS 266 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 266 (583)
+|.|.|++|+||||+|+.+.++.... . .+.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~---------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----L---------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----e---------eeccHHHHHHHHHcCCC
Confidence 68899999999999999998842211 0 12335788888877654
No 344
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.13 Score=58.17 Aligned_cols=130 Identities=17% Similarity=0.149 Sum_probs=76.7
Q ss_pred hhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhc
Q 036323 186 DEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEG 265 (583)
Q Consensus 186 ~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 265 (583)
.....+|.+.+.. ..++.|.|..|+||||-.-+++-+.-. .....+-+.-........+...+.+.++.
T Consensus 52 ~~~~~~i~~ai~~---------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~ 120 (845)
T COG1643 52 TAVRDEILKAIEQ---------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGE 120 (845)
T ss_pred HHHHHHHHHHHHh---------CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCC
Confidence 3467888888843 459999999999999998776653221 12234444444445666778888888876
Q ss_pred Cccc-------------------cccHHHHHHHHH-HHhcCCceeEEEcCCCcccccchHhhHHh----hccCCCCceEE
Q 036323 266 SAID-------------------LHELNSLLRRIG-ANIAGQKFFMVLDNLWTDDYRKWEPFRNC----LMNGLRGSKIL 321 (583)
Q Consensus 266 ~~~~-------------------~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~----l~~~~~gs~Il 321 (583)
...+ ......+.+.++ +.+-.+=-.+|+|.+++... .-+-++.. +....+.-|||
T Consensus 121 ~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl-~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 121 KLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSL-NTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred CcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhH-HHHHHHHHHHHHHhhcCCCceEE
Confidence 4210 112344444444 22233445899999976432 11222222 22233358999
Q ss_pred EecCch
Q 036323 322 ITTRKE 327 (583)
Q Consensus 322 vTtR~~ 327 (583)
|+|-.-
T Consensus 200 imSATl 205 (845)
T COG1643 200 IMSATL 205 (845)
T ss_pred EEeccc
Confidence 998754
No 345
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.33 E-value=0.061 Score=56.39 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=48.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcC------cccccc-----HHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGS------AIDLHE-----LNS 275 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~-----~~~ 275 (583)
....++|+|..|+|||||++.+.... .....++++.-....+..++....+...... ..+... ...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 35579999999999999999887632 1223445544333444544444443332111 011100 111
Q ss_pred HHHHHHHHh--cCCceeEEEcCC
Q 036323 276 LLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 276 ~~~~l~~~l--~~k~~LlVlDdv 296 (583)
..-.+.+++ +++.+||++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122233333 488999999998
No 346
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.32 E-value=0.13 Score=50.04 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|+|||||++.+...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999774
No 347
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.055 Score=55.06 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=57.8
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI 268 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 268 (583)
..++-..|-.. --...++.|-|.+|||||||..++..+ ....- .+++|+-.+. ... .+--...++....
T Consensus 79 ~~EldRVLGGG-----~V~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~ 147 (456)
T COG1066 79 IEELDRVLGGG-----LVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQ-IKLRADRLGLPTN 147 (456)
T ss_pred hHHHHhhhcCC-----cccccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHH-HHHHHHHhCCCcc
Confidence 45555555322 134568999999999999999998874 33333 5666665443 222 2223445543322
Q ss_pred -----ccccHHHHHHHHHHHhcCCceeEEEcCCC
Q 036323 269 -----DLHELNSLLRRIGANIAGQKFFMVLDNLW 297 (583)
Q Consensus 269 -----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 297 (583)
...+++.+.+.+.+ .++-|+|+|-+.
T Consensus 148 ~l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred ceEEehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 23456666655554 688899999984
No 348
>PRK03839 putative kinase; Provisional
Probab=95.27 E-value=0.012 Score=54.28 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.|.|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 349
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.26 E-value=0.29 Score=47.34 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|+|||||++.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 3469999999999999999999763
No 350
>PRK06217 hypothetical protein; Validated
Probab=95.26 E-value=0.06 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHHcCc
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDN 232 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~ 232 (583)
.|.|.|.+|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998753
No 351
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.25 E-value=0.025 Score=48.15 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=32.2
Q ss_pred ceeechhHH----HHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 181 EVRGRDEEM----RSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 181 ~~vGR~~e~----~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+++|..-.. +.|...+... ...++-|++.+|.+|+|||.+++.++++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~----~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP----NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC----CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 345554444 4444455333 3567889999999999999988777654
No 352
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.23 E-value=0.055 Score=54.89 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 036323 211 ISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~ 231 (583)
+.+.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999988864
No 353
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.23 E-value=0.013 Score=66.25 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+++.|+|+.|.|||||.+.+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 47899999999999999988754
No 354
>PRK04040 adenylate kinase; Provisional
Probab=95.21 E-value=0.015 Score=54.11 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+|+|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999998873
No 355
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.43 Score=48.67 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=35.3
Q ss_pred cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhh
Q 036323 334 ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL 394 (583)
Q Consensus 334 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 394 (583)
....++++...+.+|+.++..-+.-..-.....+ -++--+++.-..+|+|--+..++..+
T Consensus 401 qpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~-~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 401 QPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVP-GEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcC-cccchhhhhhhcCCCHHHHHHHHHhc
Confidence 3466788999999999888766542211110001 02334556777789996555555443
No 356
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.18 E-value=0.015 Score=54.10 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.++|.|.|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999886
No 357
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.17 E-value=0.081 Score=49.31 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=26.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccC--------ceEEEEEeCCC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNF--------EIRVRVCVSDP 249 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 249 (583)
.++.|.|.+|+|||+++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999998876542222222 35677776654
No 358
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.15 E-value=0.19 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|.|||||.+.+...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999764
No 359
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.42 Score=52.50 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred echhHHHHHHHHhhc-----CCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 184 GRDEEMRSIKSMLLC-----QGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 184 GR~~e~~~l~~~L~~-----~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
|-++-+.+|.+-+.- .-...+-.+..=|.++|++|.|||-||++|+..-. .-|++|-.+ +
T Consensus 676 GLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP--------E 740 (953)
T KOG0736|consen 676 GLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP--------E 740 (953)
T ss_pred CHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH--------H
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCc---------ccccchHhhHHhh--------ccCCCCceEE
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWT---------DDYRKWEPFRNCL--------MNGLRGSKIL 321 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~---------~~~~~~~~l~~~l--------~~~~~gs~Il 321 (583)
++..--++ ...++.+..++-+.. ++++|.||.+++ +.-...+.+.+.| .....+.-||
T Consensus 741 LLNMYVGq--SE~NVR~VFerAR~A---~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 741 LLNMYVGQ--SEENVREVFERARSA---APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred HHHHHhcc--hHHHHHHHHHHhhcc---CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEE
Q ss_pred EecCchHHHhh--hcC---CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhC
Q 036323 322 ITTRKETVARM--MES---TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKC 380 (583)
Q Consensus 322 vTtR~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c 380 (583)
=.|..+++... +.+ .+.+.+++=+++++..=..+..-..-.-.+.-.+.+ |+++|
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~e----iAk~c 875 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVE----IAKKC 875 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHH----HHhhC
No 360
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.14 E-value=0.17 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|+|||||++.++.-
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 361
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.12 E-value=0.025 Score=55.73 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=18.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+.|.|+|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 57899999999999999998773
No 362
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.12 E-value=0.027 Score=54.14 Aligned_cols=86 Identities=23% Similarity=0.247 Sum_probs=50.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCcccccc-CceEEEEEeCCCCChHHHHHHHHHHhhcC---------------ccc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINN-FEIRVRVCVSDPFDEFNVAKATIEELEGS---------------AID 269 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~ 269 (583)
+...++.|.|.+|+|||+|+.++... .... =..++|++...+ ...+.+.+- .++-. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 45679999999999999999887642 2222 345677777553 333333322 22211 001
Q ss_pred -----cccHHHHHHHHHHHhcC-CceeEEEcCC
Q 036323 270 -----LHELNSLLRRIGANIAG-QKFFMVLDNL 296 (583)
Q Consensus 270 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv 296 (583)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23566666776666553 4478888986
No 363
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.11 E-value=0.056 Score=58.51 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=37.7
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|....++++.+.+..-. ....-|.|.|..|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A-----~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA-----RSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh-----CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 458999998888888775433 23457889999999999999999874
No 364
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.09 E-value=0.082 Score=52.20 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+..++.|.|.+|+|||||...+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999998874
No 365
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.11 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|..|+|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 366
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.47 Score=49.13 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=79.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQK 288 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 288 (583)
|--.++|+||.|||+++.++++.. .|+. +=+.++...+-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~ydI-ydLeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYDI-YDLELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCce-EEeeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 445699999999999999999853 2332 1122222111111 2222221 2345
Q ss_pred eeEEEcCCCcc--------c-----c-----cchHhhHHhhc----cCCCCceEEEecCchHHHh--hhcC---CCeEEc
Q 036323 289 FFMVLDNLWTD--------D-----Y-----RKWEPFRNCLM----NGLRGSKILITTRKETVAR--MMES---TDIVYV 341 (583)
Q Consensus 289 ~LlVlDdv~~~--------~-----~-----~~~~~l~~~l~----~~~~gs~IlvTtR~~~v~~--~~~~---~~~~~l 341 (583)
-+|||.|++-. . . -.+.-|+..+. .++.---||+||...+-.. .+.+ ...+++
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 56677776321 0 0 11222333331 1221223556776543221 1122 456788
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccC
Q 036323 342 QGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFK 397 (583)
Q Consensus 342 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~ 397 (583)
.-=+.+.-..|+..+..... .+ .+..+|.+...|.-+.=..++..|-.+
T Consensus 368 gyCtf~~fK~La~nYL~~~~---~h----~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE---DH----RLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC---Cc----chhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 88889999999999874322 22 234455555566655556666555433
No 367
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.04 E-value=0.11 Score=56.16 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=54.8
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCc-
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSA- 267 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~- 267 (583)
+..|-++|... =....++.|.|.+|+|||||+.+++... ..+-..++++...+ +...+...+ +.++-..
T Consensus 249 i~~lD~~lgGG-----~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~ 318 (484)
T TIGR02655 249 VVRLDEMCGGG-----FFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA-YSWGIDFE 318 (484)
T ss_pred hHhHHHHhcCC-----ccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChH
Confidence 34555555332 2567799999999999999998887642 22233456666544 333444332 3333211
Q ss_pred --------------cccccHHHHHHHHHHHhcC-CceeEEEcCC
Q 036323 268 --------------IDLHELNSLLRRIGANIAG-QKFFMVLDNL 296 (583)
Q Consensus 268 --------------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 296 (583)
+.....++....+.+.+.. +.-++|+|.+
T Consensus 319 ~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 319 EMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred HHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 1112234455555555533 4457778876
No 368
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.03 E-value=0.012 Score=49.31 Aligned_cols=21 Identities=48% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 036323 211 ISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~ 231 (583)
|.|+|.+|+|||+||..++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998774
No 369
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.03 E-value=0.18 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 469999999999999999999753
No 370
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.02 E-value=0.014 Score=49.92 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=18.2
Q ss_pred EEEEecCCchHHHHHHHHHcCccccccCc
Q 036323 211 ISMVGMGGIGKTTLAQLAYNDNDVINNFE 239 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 239 (583)
|.|.|.+|+|||++|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999988 3555554
No 371
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.01 E-value=0.17 Score=50.99 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|+.|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999763
No 372
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.19 Score=52.65 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=44.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
...+++++|+.|+||||++..+............+..+.... .....+.+....+.++.+.....+..++...+.. +.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 457999999999999999987765211111122333333222 1223333444444444333222333333333332 33
Q ss_pred CCceeEEEcCC
Q 036323 286 GQKFFMVLDNL 296 (583)
Q Consensus 286 ~k~~LlVlDdv 296 (583)
+ .-++++|-.
T Consensus 269 ~-~d~VLIDTa 278 (420)
T PRK14721 269 G-KHMVLIDTV 278 (420)
T ss_pred C-CCEEEecCC
Confidence 3 346777765
No 373
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.99 E-value=0.017 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 374
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.98 E-value=0.039 Score=56.04 Aligned_cols=63 Identities=8% Similarity=0.109 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCceeEEEcCCCccc-ccchHhhHHhhcc--CCCCceEEEecCchHHHhhhcCCCe
Q 036323 276 LLRRIGANIAGQKFFMVLDNLWTDD-YRKWEPFRNCLMN--GLRGSKILITTRKETVARMMESTDI 338 (583)
Q Consensus 276 ~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~~~~~~~ 338 (583)
-...|...+.+++-++++|.+...- .-.--.+...+.. ...|+.+++.|+.+++.+.+.+...
T Consensus 514 eR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 514 ERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred HHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 3445667778888899999873311 0011112222322 1257777887887888777655443
No 375
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.96 E-value=0.099 Score=57.27 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+....++|+|+.|+|||||++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999875
No 376
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.95 E-value=0.15 Score=48.57 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.++.-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 377
>PF13479 AAA_24: AAA domain
Probab=94.94 E-value=0.081 Score=50.33 Aligned_cols=20 Identities=45% Similarity=0.408 Sum_probs=17.8
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 036323 209 QIISMVGMGGIGKTTLAQLA 228 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v 228 (583)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46789999999999999876
No 378
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.94 E-value=0.68 Score=40.93 Aligned_cols=83 Identities=10% Similarity=0.202 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHHhhhchHhHH
Q 036323 2 VDAIVSAVLEQLISVAAKEANEGVRLAVGVGQEVEKLKRNFQAIQAVLHDAEHRQV-REEGVRLWLDQLKDASYNMEDVL 80 (583)
Q Consensus 2 a~~~~~~~~~~l~~~l~~~~~~e~~~~~~v~~~i~~L~~~l~~i~~~l~~ae~~~~-~~~~~~~Wl~~lr~~ayd~eD~l 80 (583)
||.+.+++++.+.+.|...+.+...-....+.-+++|..++++|.-++++.+.-+. -+..-+.=++++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777888899999999999999998887432 23332555778888888899988
Q ss_pred HHHH
Q 036323 81 DEWI 84 (583)
Q Consensus 81 D~~~ 84 (583)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8874
No 379
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.93 E-value=0.31 Score=48.36 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|.|||||.+.++.-
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 458999999999999999999763
No 380
>PRK15453 phosphoribulokinase; Provisional
Probab=94.91 E-value=0.11 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+..+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998875
No 381
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.91 E-value=0.029 Score=56.44 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=42.9
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...|+|.++.+++|++.+.... .+.+..-+++.++|+.|.|||||+..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA-~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAA-QGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHH-hccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999987654 22356788999999999999999988876
No 382
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.91 E-value=0.019 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 383
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.91 E-value=0.015 Score=53.80 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 384
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.91 E-value=0.19 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
++++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988764
No 385
>PRK00625 shikimate kinase; Provisional
Probab=94.91 E-value=0.017 Score=52.82 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999773
No 386
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.89 E-value=0.081 Score=55.31 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=46.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcC-------ccccccH-----H
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGS-------AIDLHEL-----N 274 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-------~~~~~~~-----~ 274 (583)
....++|+|..|+|||||++.+..... ....++...-.+.-...++....+..-... ..+.... .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 345789999999999999998887422 122233222222333444444433321111 0011111 1
Q ss_pred HHHHHHHHHh--cCCceeEEEcCC
Q 036323 275 SLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 275 ~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
...-.+.+++ +++++||++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222234444 578999999998
No 387
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.89 E-value=0.075 Score=59.59 Aligned_cols=131 Identities=17% Similarity=0.127 Sum_probs=69.9
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
+.++|....+.++.+.+..-. ....-|.|+|..|+||+++|+.+++..... -...+.+++..-. ...+...
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a-----~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~~-~~~~~~e- 395 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA-----KSSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLYP-DEALAEE- 395 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh-----CcCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCCC-hHHHHHH-
Confidence 457899988888887775433 223347899999999999999998742111 1122334544332 1222222
Q ss_pred HHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEecCc
Q 036323 260 IEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILITTRK 326 (583)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~ 326 (583)
+.+....... ......+ -....=.|+||++..........|...+..+. ...+||.||..
T Consensus 396 ---lfg~~~~~~~-~~~~g~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 396 ---FLGSDRTDSE-NGRLSKF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred ---hcCCCCcCcc-CCCCCce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 2221100000 0000000 01234469999997655555666666664321 13467777654
No 388
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.89 E-value=0.016 Score=54.55 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+|+|.|.+|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 389
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.87 E-value=0.022 Score=54.49 Aligned_cols=29 Identities=38% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCceEEEEEEecCCchHHHHHHHHHcCcc
Q 036323 205 TNTVQIISMVGMGGIGKTTLAQLAYNDND 233 (583)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 233 (583)
..++.+|.++||+|+||||..+.++.+..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHh
Confidence 35677889999999999999999987533
No 390
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.87 E-value=0.06 Score=55.68 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=36.9
Q ss_pred CceeechhHHHHHHHHhhcC-------CCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQ-------GSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|.++.++.+.-.+... ..-.....++-|.++|++|+|||+||+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789888888887666532 00001123467889999999999999999874
No 391
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.81 E-value=0.084 Score=50.06 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=32.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC-ChHHHHHHH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF-DEFNVAKAT 259 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 259 (583)
..-++|.|.+|+|||+|+..+.++. .-+.++++.+.+.. ...++.+.+
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~ 63 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEEL 63 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHH
Confidence 3578899999999999999998753 22344777776543 334444444
No 392
>PRK05973 replicative DNA helicase; Provisional
Probab=94.80 E-value=0.13 Score=49.38 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=31.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
....++.|.|.+|+|||+++.++..... ..-..+++++.... ..++...
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHH
Confidence 3456889999999999999988766421 22234666665543 3444444
No 393
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.80 E-value=0.13 Score=51.84 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=46.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeC-CCCChHHHHHHHHHHhhcC-------cccccc-----H
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVS-DPFDEFNVAKATIEELEGS-------AIDLHE-----L 273 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~-------~~~~~~-----~ 273 (583)
....++|+|..|+|||||.+.+.+... -+..+..-+. +..+..++....+..-... ..+... .
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 345789999999999999999887422 1233333333 2334444444444332111 011100 1
Q ss_pred HHHHHHHHHHh--cCCceeEEEcCC
Q 036323 274 NSLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 274 ~~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
....-.+.+++ +++.+||++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 11122233333 588999999998
No 394
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.80 E-value=0.028 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999998864
No 395
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.80 E-value=0.02 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 396
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.78 E-value=0.13 Score=54.75 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=49.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (583)
....++.|.|.+|+|||||+.+++.... ..-..++|++.... ...+.. -++.++.... ...+.+.+...+
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 3466999999999999999998876422 22235677776543 222222 2344433211 123445554444
Q ss_pred HHHhcCCceeEEEcCCC
Q 036323 281 GANIAGQKFFMVLDNLW 297 (583)
Q Consensus 281 ~~~l~~k~~LlVlDdv~ 297 (583)
. +.+.-++|+|.+.
T Consensus 153 ~---~~~~~lVVIDSIq 166 (446)
T PRK11823 153 E---EEKPDLVVIDSIQ 166 (446)
T ss_pred H---hhCCCEEEEechh
Confidence 3 2356699999984
No 397
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.78 E-value=0.04 Score=49.40 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=29.6
Q ss_pred hHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 187 EEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 187 ~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+.+++|.+.|. + ++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~---------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK---------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT---------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc---------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45788888883 2 68999999999999999999885
No 398
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.77 E-value=0.019 Score=51.25 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4689999999999999998874
No 399
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.75 E-value=0.13 Score=45.61 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 036323 211 ISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~ 231 (583)
|+|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999775
No 400
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.74 E-value=0.41 Score=47.92 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...++++.|+.|+|||||.+.+..-
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999763
No 401
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.73 E-value=0.14 Score=48.27 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHhcCCceeEEEcCCCcc-cccchH-hhHHhhccCC-C-CceEEEecCchHHHh
Q 036323 280 IGANIAGQKFFMVLDNLWTD-DYRKWE-PFRNCLMNGL-R-GSKILITTRKETVAR 331 (583)
Q Consensus 280 l~~~l~~k~~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~IlvTtR~~~v~~ 331 (583)
+...+..++-++++|+.... +..... .+...+.... . |..||++|.+.....
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 44556678899999998432 222334 4444443322 2 556888888776654
No 402
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.72 E-value=0.15 Score=52.12 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.+..-
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999753
No 403
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.72 E-value=0.018 Score=53.26 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 404
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.72 E-value=0.3 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|.|..|+|||||.+.++..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998753
No 405
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.71 E-value=0.36 Score=46.25 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|+|||||++.++.-
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3558999999999999999998763
No 406
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.71 E-value=0.26 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|.|+.|.|||||.+.++.-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999763
No 407
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.71 E-value=0.18 Score=53.66 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI 268 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 268 (583)
+..|-+.|... -....++.|.|.+|+|||||+.++..... ..-..++|++.... ...+.. -+..++....
T Consensus 80 i~~LD~vLgGG-----i~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~ 149 (454)
T TIGR00416 80 FGELDRVLGGG-----IVPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEES--LQQIKM-RAIRLGLPEP 149 (454)
T ss_pred cHHHHHHhcCC-----ccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcCC--HHHHHH-HHHHcCCChH
Confidence 45555555322 24567999999999999999998866422 12134677765433 222221 1223322211
Q ss_pred -----ccccHHHHHHHHHHHhcCCceeEEEcCCC
Q 036323 269 -----DLHELNSLLRRIGANIAGQKFFMVLDNLW 297 (583)
Q Consensus 269 -----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 297 (583)
...+.+.+...+.+ .+.-++|+|.+.
T Consensus 150 ~l~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 150 NLYVLSETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred HeEEcCCCCHHHHHHHHHh---cCCcEEEEecch
Confidence 12344444444432 356689999984
No 408
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.32 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|..|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 409
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.70 E-value=0.55 Score=44.19 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|.|..|.|||||++.+..-
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3558999999999999999999874
No 410
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.027 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999987766
No 411
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.69 E-value=0.33 Score=52.11 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|+|||||++.++.-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 412
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.69 E-value=0.23 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.+..-
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999763
No 413
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.46 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDN 232 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~ 232 (583)
.-+-+|-|+.|+||||||..+.-++
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999997765
No 414
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.68 E-value=0.22 Score=48.35 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCc-ccccchHhhHHhhcc--CCCCceEEEecCchHHHhhhc
Q 036323 275 SLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMN--GLRGSKILITTRKETVARMME 334 (583)
Q Consensus 275 ~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~~~ 334 (583)
...-.+...|..++=+|+||.--+ -|....-.+...+.. ...|..||+++-+.+.+...+
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 334455666777888999998632 111111223333322 245778999999988776543
No 415
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.022 Score=52.79 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=21.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999885
No 416
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.11 Score=57.98 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++++|+.|+||||++..++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 579999999999999999888763
No 417
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.67 E-value=0.07 Score=54.76 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=59.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.|.|+.|+||||+...+.+. +..+....++. +.++... ..... ..+........+.......++..|...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 468999999999999999988763 33333344433 2222111 00000 000000000111123556677778888
Q ss_pred ceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHH
Q 036323 288 KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETV 329 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v 329 (583)
+=.|++|.+- +.+.+... +.....|..++.|.-....
T Consensus 196 pd~i~vgEir--d~~~~~~~---l~aa~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 196 PDVILIGEMR--DLETVELA---LTAAETGHLVFGTLHTNSA 232 (343)
T ss_pred CCEEEEeCCC--CHHHHHHH---HHHHHcCCcEEEEEcCCCH
Confidence 9999999994 33344432 2233446666666654433
No 418
>PRK05922 type III secretion system ATPase; Validated
Probab=94.64 E-value=0.15 Score=53.32 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=47.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCc-------ccccc-----H
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSA-------IDLHE-----L 273 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~-------~~~~~-----~ 273 (583)
....++|+|..|+|||||.+.+.+.. ..+..+.+-++. .....+.+.+......... .+... .
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34568999999999999999998742 123333333333 2233444444443322211 01000 1
Q ss_pred HHHHHHHHHHh--cCCceeEEEcCC
Q 036323 274 NSLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 274 ~~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
....-.+.+++ +++++||++||+
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11222334444 589999999999
No 419
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.61 E-value=0.025 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
++++|+|++|+|||||++.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999873
No 420
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.61 E-value=0.033 Score=57.23 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=46.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccc----cccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDV----INNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIG 281 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 281 (583)
..++=+-|+|..|.|||.|...+|+...+ +-||. .....+-+.+.........+ ..+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l----~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPL----PQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccH----HHHH
Confidence 45778889999999999999999986433 22332 23334444433222122222 2333
Q ss_pred HHhcCCceeEEEcCCCccc
Q 036323 282 ANIAGQKFFMVLDNLWTDD 300 (583)
Q Consensus 282 ~~l~~k~~LlVlDdv~~~~ 300 (583)
+.+.++..||.||.+.-.|
T Consensus 122 ~~l~~~~~lLcfDEF~V~D 140 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTD 140 (362)
T ss_pred HHHHhcCCEEEEeeeeccc
Confidence 4456677799999985443
No 421
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.2 Score=48.35 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999764
No 422
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.59 E-value=0.13 Score=47.98 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 423
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.57 E-value=0.49 Score=42.50 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHhhcC------ccccccHHHHHHHHHHHhcCCceeEEEcCCC----cccccchHhhHHhhccCCCCceE
Q 036323 251 DEFNVAKATIEELEGS------AIDLHELNSLLRRIGANIAGQKFFMVLDNLW----TDDYRKWEPFRNCLMNGLRGSKI 320 (583)
Q Consensus 251 ~~~~~~~~il~~l~~~------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~----~~~~~~~~~l~~~l~~~~~gs~I 320 (583)
+.....+.++.+++.. +.+.+.-++..-.|.+.+..++-+|+-|.-- ...-....++.-.+ ....|+..
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceE
Confidence 3445566667766543 2233444455556777788889999988652 11112333333222 34568888
Q ss_pred EEecCchHHHhhhc
Q 036323 321 LITTRKETVARMME 334 (583)
Q Consensus 321 lvTtR~~~v~~~~~ 334 (583)
++.|-++.++..|.
T Consensus 201 VlVTHD~~LA~Rc~ 214 (228)
T COG4181 201 VLVTHDPQLAARCD 214 (228)
T ss_pred EEEeCCHHHHHhhh
Confidence 99999999887654
No 424
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.56 E-value=0.032 Score=51.66 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=28.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEe
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCV 246 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 246 (583)
.+++.|+|+.|+|||||++.+.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 46889999999999999999988 34456654554443
No 425
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.56 E-value=0.022 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998863
No 426
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.52 Score=43.04 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+.|.|..|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 4788999999999999999865
No 427
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.55 E-value=0.084 Score=55.74 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=53.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC-ChHHHHHHHHHHhhcC-------cccccc-----
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF-DEFNVAKATIEELEGS-------AIDLHE----- 272 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~----- 272 (583)
....-++|.|.+|+|||||+..+.++... .+-+.++++-+.+.. ...++...+...-... ..+...
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 34567899999999999999888875322 245777777766543 3444555544321110 001111
Q ss_pred HHHHHHHHHHHh---cCCceeEEEcCC
Q 036323 273 LNSLLRRIGANI---AGQKFFMVLDNL 296 (583)
Q Consensus 273 ~~~~~~~l~~~l---~~k~~LlVlDdv 296 (583)
.......+.+++ +++++||++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 112223344555 378999999999
No 428
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.54 E-value=0.1 Score=56.29 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=36.4
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~-----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS-----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh-----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 458999888888877764332 23446789999999999999999874
No 429
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.53 E-value=0.82 Score=45.42 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=46.7
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-HHHhhhcC-CCeEEcCCCChHHHHHHHHH
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-TVARMMES-TDIVYVQGLSELECWSLFRR 355 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~~~-~~~~~l~~L~~~ea~~Lf~~ 355 (583)
+++-++|+|+++..+....+.|...+.....++.+|++|.+. .+...+.+ ...+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 556699999998777778888888887766667677666554 44433333 56777766 66666666543
No 430
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.53 E-value=0.028 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHHcCc
Q 036323 211 ISMVGMGGIGKTTLAQLAYNDN 232 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~~ 232 (583)
|.|+|..|+|||||.+.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998753
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.53 E-value=0.11 Score=55.13 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=45.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAG 286 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (583)
..|++++|+.|+||||++..++...........+..++... .....+-+....+.++.......+..+....+. .+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hccC
Confidence 47999999999999999988876322121112334444322 122334444444444433222222222222222 2333
Q ss_pred CceeEEEcCCC
Q 036323 287 QKFFMVLDNLW 297 (583)
Q Consensus 287 k~~LlVlDdv~ 297 (583)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 477788763
No 432
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.51 E-value=0.089 Score=56.99 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=37.8
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|....++++.+.+..-. .....|.|.|..|+||+.+|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A-----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA-----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh-----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 458999998888888875432 23457889999999999999999874
No 433
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.50 E-value=0.12 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=21.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+.+|.++|.+|+||||++..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988765
No 434
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.49 E-value=0.25 Score=48.35 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|..|.|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3559999999999999999998763
No 435
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.46 E-value=0.21 Score=53.74 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=69.4
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
..++|......++...+.... .....+.|.|..|+||+++|+.+...... .....+-+++... ..+.+...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-----~~~~~vli~Ge~GtGK~~~A~~ih~~~~~--~~~~~~~~~c~~~--~~~~~~~~ 204 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-----RSDITVLINGESGTGKELVARALHRHSPR--ANGPFIALNMAAI--PKDLIESE 204 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-----CcCCeEEEECCCCCCHHHHHHHHHHhCCC--CCCCeEEEeCCCC--CHHHHHHH
Confidence 357888777777777665432 22345789999999999999999874221 1122233344332 12222222
Q ss_pred HHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEecCch
Q 036323 260 IEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILITTRKE 327 (583)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~~ 327 (583)
+ .+........ ..............-.|+||++..-.......|...+..+. .+.+||+||...
T Consensus 205 l---fg~~~~~~~~-~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 205 L---FGHEKGAFTG-ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred h---cCCCCCCCCC-cccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 2 2211100000 00000000011223458999997655555666666554321 245788888643
No 436
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.46 E-value=0.29 Score=54.17 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....++|+|..|.|||||++.+..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999876
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.46 E-value=0.023 Score=64.59 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAY 229 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~ 229 (583)
..+++.|+|+.+.||||+.+.+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHH
Confidence 45788999999999999998874
No 438
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.46 E-value=0.026 Score=51.39 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.0
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 036323 211 ISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~ 231 (583)
|.|+|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999998764
No 439
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.46 E-value=0.3 Score=54.22 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=20.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....++|+|..|+|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998865
No 440
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.45 E-value=0.11 Score=54.24 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=49.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC-hHHHHHHHHHHhhcC-------cccccc-----H
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD-EFNVAKATIEELEGS-------AIDLHE-----L 273 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~-----~ 273 (583)
....++|+|..|+|||||++.+++.. ..+.++..-+.+... ..++...++..-... ..+... .
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34578999999999999999998632 224555566655433 344444443331111 001111 1
Q ss_pred HHHHHHHHHHh--cCCceeEEEcCC
Q 036323 274 NSLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 274 ~~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
....-.+.+++ +++++||++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 11122233444 589999999999
No 441
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.45 E-value=0.042 Score=54.10 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=34.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP 249 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 249 (583)
+..+++.|.|.+|+|||+++.++... ...+...++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC
Confidence 56789999999999999999888773 4455778999988764
No 442
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.43 E-value=0.1 Score=50.85 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=35.8
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++|..--.+.++..+.+--.+....++-+++.+|.+|+||.-.++.++++
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n 133 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAEN 133 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHH
Confidence 456665555555555543222224567889999999999999999888775
No 443
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.43 E-value=0.2 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHC
Confidence 45899999999999999999976
No 444
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.42 E-value=0.22 Score=48.26 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=35.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEE 262 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (583)
...++.|.|.+|+|||+++.+++.+... .+=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 4568999999999999999887664222 2123466666554 455666666544
No 445
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.42 E-value=0.029 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|++|+|||||++.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3568999999999999999999874
No 446
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.41 E-value=0.093 Score=49.32 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=48.2
Q ss_pred CCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc---ccccHHHHHHHHH
Q 036323 205 TNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI---DLHELNSLLRRIG 281 (583)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~ 281 (583)
...+.++.|.|.+|+||||++..+..... ....+.++...--........+... ..... .......+...+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 36788999999999999999998876311 2344555432211111112222222 11111 1122334555666
Q ss_pred HHhcCCceeEEEcCCCcccccchHhhHHhhcc
Q 036323 282 ANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMN 313 (583)
Q Consensus 282 ~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 313 (583)
+..-.+++=+|+|..-.. ......+...+..
T Consensus 87 ~~a~~~~~nii~E~tl~~-~~~~~~~~~~~k~ 117 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSN-PSKLRKLIREAKA 117 (199)
T ss_dssp HHHHHCT--EEEE--TTS-SHHHHHHHHHHHC
T ss_pred HHHHHcCCCEEEecCCCC-hhHHHHHHHHHHc
Confidence 666677778888987432 2233334444544
No 447
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.41 E-value=0.17 Score=51.16 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....+++++|++|+||||++..++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999888764
No 448
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.41 E-value=0.024 Score=50.11 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998863
No 449
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.40 E-value=0.033 Score=49.02 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=26.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD 248 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 248 (583)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999998853 224455555565544
No 450
>PRK08149 ATP synthase SpaL; Validated
Probab=94.39 E-value=0.17 Score=53.00 Aligned_cols=86 Identities=12% Similarity=0.216 Sum_probs=48.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcC-------cccccc-----H
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGS-------AIDLHE-----L 273 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~-------~~~~~~-----~ 273 (583)
....++|+|.+|+|||||...+++... -+.++...+.. ..+..++....+...... ..+... .
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 455789999999999999999987422 22333333332 234445555555432211 011111 1
Q ss_pred HHHHHHHHHHh--cCCceeEEEcCC
Q 036323 274 NSLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 274 ~~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
......+.+++ +++++||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 11222233333 589999999999
No 451
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.39 E-value=0.034 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+..+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999877
No 452
>PRK15115 response regulator GlrR; Provisional
Probab=94.32 E-value=0.11 Score=55.64 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=33.0
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++|....+.++.+....-. .....|.|.|.+|+|||++|+.+.+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a-----~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA-----QSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhc-----cCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 46787777776666553322 22345679999999999999999874
No 453
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.32 E-value=0.034 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 454
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.031 Score=50.06 Aligned_cols=20 Identities=40% Similarity=0.735 Sum_probs=18.3
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 036323 210 IISMVGMGGIGKTTLAQLAY 229 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~ 229 (583)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999998876
No 455
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.31 E-value=0.17 Score=52.98 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=48.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC-hHHHHHHHHHHhhcC-------ccccccH-----
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD-EFNVAKATIEELEGS-------AIDLHEL----- 273 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~----- 273 (583)
....++|+|..|+|||||++.+++... .+.++++-+..... ..++....+..-+.. ..+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456789999999999999999987422 23445555555433 334444343321111 0011111
Q ss_pred HHHHHHHHHHh--cCCceeEEEcCC
Q 036323 274 NSLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 274 ~~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
....-.+.+++ +++.+||++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11222233444 588999999999
No 456
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.31 E-value=0.16 Score=53.21 Aligned_cols=88 Identities=16% Similarity=0.179 Sum_probs=49.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcC-------cccc-c----cHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGS-------AIDL-H----ELN 274 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-------~~~~-~----~~~ 274 (583)
....++|.|..|+|||||+..++..... ...++...-.+.....+.+...+..-+.. ..+. . ...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4557899999999999999999875321 12233322223345555655554432211 0011 0 111
Q ss_pred HHHHHHHHHh--cCCceeEEEcCCC
Q 036323 275 SLLRRIGANI--AGQKFFMVLDNLW 297 (583)
Q Consensus 275 ~~~~~l~~~l--~~k~~LlVlDdv~ 297 (583)
.....+.+++ ++++.||++||+-
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchH
Confidence 2222333333 4789999999983
No 457
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.29 E-value=0.041 Score=52.05 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+.+.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 5678899999999999999999875
No 458
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.29 E-value=0.53 Score=42.72 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=26.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEE
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVC 245 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 245 (583)
...+++|.|++|.|||||...++.- ...-.+.+|++
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF---~~P~~G~i~i~ 59 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGF---ETPASGEILIN 59 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhc---cCCCCceEEEc
Confidence 3468999999999999999988752 12223456664
No 459
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.27 E-value=0.25 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred CCEEEEECCCCCcHHHHHHHHHC
Confidence 45899999999999999999976
No 460
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.26 E-value=0.17 Score=49.74 Aligned_cols=81 Identities=19% Similarity=0.196 Sum_probs=43.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
..++.|.|..|+||||++..+.+. +...-..++ .+.++.... +.. ..++.... .........++..|+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~~~~~ii--tiEdp~E~~--~~~-~~q~~v~~---~~~~~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNII--TVEDPVEYQ--IPG-INQVQVNE---KAGLTFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEE--EECCCceec--CCC-ceEEEeCC---cCCcCHHHHHHHHhccC
Confidence 458999999999999999888663 221111222 222221100 000 00111010 00113455667777888
Q ss_pred ceeEEEcCCCc
Q 036323 288 KFFMVLDNLWT 298 (583)
Q Consensus 288 ~~LlVlDdv~~ 298 (583)
+=.|+++++-+
T Consensus 150 PD~i~vgEiR~ 160 (264)
T cd01129 150 PDIIMVGEIRD 160 (264)
T ss_pred CCEEEeccCCC
Confidence 88999999943
No 461
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.26 E-value=0.037 Score=51.41 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999874
No 462
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.26 E-value=0.22 Score=48.77 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=53.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccc--cccCceEEEEEeCCCC-ChHHHHHHHHHHhhcC-------cccccc----
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDV--INNFEIRVRVCVSDPF-DEFNVAKATIEELEGS-------AIDLHE---- 272 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~---- 272 (583)
.-+-++|.|-.|+|||+|+..+.++... +.+-+.++++-+.+.. ...++...+...-... ..+...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4557799999999999999988875321 1234677788777654 3445555554431111 001111
Q ss_pred -HHHHHHHHHHHh---cCCceeEEEcCC
Q 036323 273 -LNSLLRRIGANI---AGQKFFMVLDNL 296 (583)
Q Consensus 273 -~~~~~~~l~~~l---~~k~~LlVlDdv 296 (583)
.....-.+.+++ +++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 111222344444 278999999998
No 463
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.26 E-value=0.13 Score=53.71 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=46.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC-ChHHHHHHHHHHhhcC-------cccccc-----H
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF-DEFNVAKATIEELEGS-------AIDLHE-----L 273 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~-----~ 273 (583)
....++|+|..|+|||||.+.+.+... .+..+...+.... ...++...+...-... ..+... .
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 345789999999999999998887422 2333344444432 2333333333221100 011100 1
Q ss_pred HHHHHHHHHHh--cCCceeEEEcCC
Q 036323 274 NSLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 274 ~~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
....-.+.+++ +++++||++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 11122233343 588999999998
No 464
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.22 E-value=0.27 Score=45.47 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...++.|.|.+|+||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998863
No 465
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.22 E-value=0.12 Score=57.26 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=46.6
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccc-cCceEEEEEeCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVIN-NFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~ 257 (583)
-.+++|.++.++.+...+... +.+.++|++|+||||+|+.+.+. ... .|...+++.-+ ..+...++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~---------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~-~~~~~~~~~ 84 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK---------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNP-EDPNMPRIV 84 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC---------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCC-CCCchHHHH
Confidence 357899998888888777432 25559999999999999999874 322 33333333222 223344455
Q ss_pred HHHHHhh
Q 036323 258 ATIEELE 264 (583)
Q Consensus 258 ~il~~l~ 264 (583)
.+...++
T Consensus 85 ~v~~~~g 91 (608)
T TIGR00764 85 EVPAGEG 91 (608)
T ss_pred HHHHhhc
Confidence 5555444
No 466
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.22 E-value=0.35 Score=49.86 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCCCC--CCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEe-CCCCChHHHHHHHHHHhhc
Q 036323 189 MRSIKSMLLCQGSDQ--QTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCV-SDPFDEFNVAKATIEELEG 265 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~ 265 (583)
.++|++.|.....+. ....+.+|..+|.-|+||||-|-.+++..+. ..+.. .-|++ ...+...+-++.+.++.+.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kv-llVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKV-LLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCce-EEEecccCChHHHHHHHHHHHHcCC
Confidence 456666665321111 1345789999999999999999877764322 22222 22221 2223444556666666554
No 467
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.065 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=22.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++.|.|++|+|||||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999999985
No 468
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.21 E-value=0.095 Score=56.07 Aligned_cols=86 Identities=23% Similarity=0.190 Sum_probs=45.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEE-EeCCCCChHHHHHHHHHHhhc----C-cccc----ccHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRV-CVSDPFDEFNVAKATIEELEG----S-AIDL----HELNSL 276 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-~~~~~~~~~~~~~~il~~l~~----~-~~~~----~~~~~~ 276 (583)
.-.-.+|+|.+|+|||||++.+.+... ..+-++.++| -+.+..... ..+-+.+.. . .... .....+
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~ 490 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAEL 490 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHH
Confidence 455678999999999999999988421 1223344333 344332221 122222211 1 1111 111222
Q ss_pred HHHHHHHh--cCCceeEEEcCC
Q 036323 277 LRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 277 ~~~l~~~l--~~k~~LlVlDdv 296 (583)
.-.+.+++ .++.+||++|++
T Consensus 491 ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 491 AIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHcCCCEEEEEeCc
Confidence 22333444 588999999998
No 469
>PRK13947 shikimate kinase; Provisional
Probab=94.21 E-value=0.031 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 470
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.33 Score=49.09 Aligned_cols=34 Identities=6% Similarity=-0.101 Sum_probs=26.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhh
Q 036323 21 ANEGVRLAVGVGQEVEKLKRNFQAIQAVLHDAEH 54 (583)
Q Consensus 21 ~~~e~~~~~~v~~~i~~L~~~l~~i~~~l~~ae~ 54 (583)
+..++.++.+...-...++.-+..|+..+..+..
T Consensus 12 ~ar~~al~G~~d~~~~~~~g~~~~~~r~l~s~~d 45 (491)
T KOG0738|consen 12 LAREYALLGNYDSAGIYYRGLLYLMNRYLVSTGD 45 (491)
T ss_pred HHHHHHHhcCcchhHHHHHhHHHHHHHHHhccCC
Confidence 3467888888888888888888888888876553
No 471
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.19 E-value=0.37 Score=47.13 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=72.4
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
.+.|+|-.. ..++..++.... ...+.+.|+|+.|+|||+-++.+++. ....+-+..+..++...+...
T Consensus 71 ~~~~l~tkt-~r~~~~~~~~A~-----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~ 138 (297)
T COG2842 71 APDFLETKT-VRRIFFRTRPAS-----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILI 138 (297)
T ss_pred cccccccch-hHhHhhhhhhhh-----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHH
Confidence 345665543 233444443222 33448889999999999999999883 122223344555555555555
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhcc
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMN 313 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 313 (583)
+......... .........+...+.+..-++++|+...-....++.+......
T Consensus 139 i~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 139 ICAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HHHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 5555544422 2233445555566688888999999876656666666654433
No 472
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=94.18 E-value=0.36 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|.++|..|+||||++..+...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~ 23 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGK 23 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3679999999999999998765
No 473
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.16 E-value=0.27 Score=48.34 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=38.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGS 266 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 266 (583)
..++.|-|.+|+|||++|..++.+...... ..++|++.. .+..++...++.....-
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlE--m~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLE--MSEEELAARLLARLSGV 74 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESS--S-HHHHHHHHHHHHHTS
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCC--CCHHHHHHHHHHHhhcc
Confidence 458889999999999999988875333222 456666543 46677888887777544
No 474
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.14 E-value=0.38 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 475
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.14 E-value=0.052 Score=62.51 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=71.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCc--cccccCceEEEEEeCCCC----ChH--HHHHHHHHHhhcCccccccHHHHHHH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDN--DVINNFEIRVRVCVSDPF----DEF--NVAKATIEELEGSAIDLHELNSLLRR 279 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~----~~~--~~~~~il~~l~~~~~~~~~~~~~~~~ 279 (583)
..-+.|+|.+|+||||+.+.+.-.. +....=+..+++.+.... ... .+..-+...+...... ......
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~----~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIA----KQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCc----chhhHH
Confidence 4478899999999999998875421 111112233444332110 011 1112222222222111 112222
Q ss_pred HHHHhcCCceeEEEcCCCcccccch----HhhHHhhccCCCCceEEEecCchHHHhhhcCCCeEEcCCCChHHHH
Q 036323 280 IGANIAGQKFFMVLDNLWTDDYRKW----EPFRNCLMNGLRGSKILITTRKETVARMMESTDIVYVQGLSELECW 350 (583)
Q Consensus 280 l~~~l~~k~~LlVlDdv~~~~~~~~----~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~ea~ 350 (583)
..++++..++++++|.+.......- ..+.. +...-+.+.+|+|+|....-........+++..+.++.-.
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~-f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINK-FLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHH-HhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 2567788999999999854322211 11212 2233457889999997655544444555666666665544
No 476
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.13 E-value=0.56 Score=57.01 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDN 232 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 232 (583)
.++-|.++|++|+|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999863
No 477
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.13 E-value=0.034 Score=51.61 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=18.3
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999988863
No 478
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.12 E-value=0.48 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....++|+|..|+|||||++.+..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999865
No 479
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.22 Score=47.60 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCceeechhHHHHHHHHhhcCCC------CCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGS------DQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+.+=|=.+++++|.+...-+-- .-+-..++-|.++|++|.|||-+|+.|+|
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 34566777888888776532210 00123456788999999999999999999
No 480
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.12 E-value=0.46 Score=52.82 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....++|+|..|+|||||++.+...
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999988763
No 481
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.11 E-value=0.14 Score=49.84 Aligned_cols=77 Identities=16% Similarity=0.045 Sum_probs=41.8
Q ss_pred EEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC--hHHHHHHHHHHhh----cCc--cccccHHHHHHHHH
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD--EFNVAKATIEELE----GSA--IDLHELNSLLRRIG 281 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~----~~~--~~~~~~~~~~~~l~ 281 (583)
+|+|.|.+|+||||+++.+.......+ ..+..++...... -...-..+..... -.. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998876321111 1233343322222 1122222222211 112 45667777777787
Q ss_pred HHhcCCc
Q 036323 282 ANIAGQK 288 (583)
Q Consensus 282 ~~l~~k~ 288 (583)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776654
No 482
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.11 E-value=0.11 Score=50.79 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=46.2
Q ss_pred ceEEEEEEecCCchHHHHH-HHHHcCccccccCceE-EEEEeCCCC-ChHHHHHHHHHHhhcC-------ccccccHHH-
Q 036323 207 TVQIISMVGMGGIGKTTLA-QLAYNDNDVINNFEIR-VRVCVSDPF-DEFNVAKATIEELEGS-------AIDLHELNS- 275 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~- 275 (583)
+-+-++|.|.+|+|||+|| ..+.+.. +-+.+ +++-+.+.. ...++.+.+...-... ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4557889999999999996 6565531 23334 555555543 3444555544321110 001111110
Q ss_pred ----HHHHHHHHh--cCCceeEEEcCC
Q 036323 276 ----LLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 276 ----~~~~l~~~l--~~k~~LlVlDdv 296 (583)
..-.+.+++ +++.+||++||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112222322 588999999999
No 483
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.11 E-value=0.038 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999774
No 484
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.11 E-value=0.047 Score=45.32 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=19.9
Q ss_pred eEEEEEEecCCchHHHHHHHHH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAY 229 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~ 229 (583)
...++|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4688999999999999999876
No 485
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.09 E-value=0.034 Score=48.86 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999874
No 486
>PRK13949 shikimate kinase; Provisional
Probab=94.08 E-value=0.035 Score=50.73 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|.|+|++|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 487
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.08 E-value=0.13 Score=55.60 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEEecCCchHHHHHHHH--------------------HcCccccccC---ceEEEEEeCCCCChHHHHHHHHHHhhcCc
Q 036323 211 ISMVGMGGIGKTTLAQLA--------------------YNDNDVINNF---EIRVRVCVSDPFDEFNVAKATIEELEGSA 267 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v--------------------~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 267 (583)
|+|+|+.|+|||||.+.+ |-++....-+ ...-|+.-..+.......+..+..+.-..
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Q ss_pred c-------ccccHHHHHHHHHHHhcCCceeEEEcCCCc-ccccchHhhHHhhccCCCCceEEEecCchHHHhhhcCCCeE
Q 036323 268 I-------DLHELNSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILITTRKETVARMMESTDIV 339 (583)
Q Consensus 268 ~-------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~~~~~~ 339 (583)
. ..+.-+...-.|...+-.++-+||||.--+ -|.+..+.|...|.... |+ ||+.|-++.....+. ..++
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~~va-~~i~ 507 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLDRVA-TRIW 507 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHHhhc-ceEE
Q ss_pred EcCC
Q 036323 340 YVQG 343 (583)
Q Consensus 340 ~l~~ 343 (583)
.+.+
T Consensus 508 ~~~~ 511 (530)
T COG0488 508 LVED 511 (530)
T ss_pred EEcC
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.07 E-value=0.17 Score=53.03 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=48.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC-CChHHHHHHHHHHhhcC-------ccccccHHH---
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP-FDEFNVAKATIEELEGS-------AIDLHELNS--- 275 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~--- 275 (583)
....++|+|..|+|||||.+.+.+.. +.+..++..+... ....+.+.+....-... ..+....+.
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 45688999999999999999988742 2344455555443 33445455443211000 001111111
Q ss_pred --HHHHHHHHh--cCCceeEEEcCC
Q 036323 276 --LLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 276 --~~~~l~~~l--~~k~~LlVlDdv 296 (583)
..-.+.+++ +++++||++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122233444 588999999999
No 489
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.06 E-value=0.2 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.3
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.....++|+|..|+|||||++.+...
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34568999999999999999988874
No 490
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.05 E-value=0.24 Score=52.26 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 186 DEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 186 ~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+-+.++..||..-..-...-+.+++.|+|++|+||||.++.++..
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 3457788888861100012245679999999999999999988763
No 491
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.03 E-value=0.13 Score=53.26 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=37.4
Q ss_pred CceeechhHHHHHHHHhhcC-------CCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQ-------GSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|.++.++.+..++... .........+.+.++|++|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999998888777431 00001112467899999999999999998874
No 492
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=94.03 E-value=0.3 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 493
>PRK14530 adenylate kinase; Provisional
Probab=94.03 E-value=0.036 Score=52.87 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 494
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.84 Score=49.83 Aligned_cols=180 Identities=17% Similarity=0.182 Sum_probs=93.3
Q ss_pred CceeechhHHHHHHHHhhcCCCCC------CCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQ------QTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
.++-|..+.++.|.+.+..+.... .-....-|.++|++|+|||-||..+..... .-++++-.+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----
Confidence 355677777777777776554110 112334588999999999999999887321 123455432
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc-----------ccchHhhHHhhc--cCCCCceE
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD-----------YRKWEPFRNCLM--NGLRGSKI 320 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~--~~~~gs~I 320 (583)
+++. +.++.+. .+ ......+.-.-++++|.||.+++-. ....+++...+. .+-.|.-|
T Consensus 736 ElL~---KyIGaSE---q~---vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 ELLS---KYIGASE---QN---VRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred HHHH---HHhcccH---HH---HHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 2222 2222221 11 2222223335689999999986411 112344444442 23456666
Q ss_pred EE-ecCchHHHhh-hcC---CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCc
Q 036323 321 LI-TTRKETVARM-MES---TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLP 384 (583)
Q Consensus 321 lv-TtR~~~v~~~-~~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 384 (583)
+. |||..-+-.. +.+ .+.+.-+.-+..+-.++|....-.-. ...+-+ .+.++.++.|..
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~-~~~~vd----l~~~a~~T~g~t 870 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL-KDTDVD----LECLAQKTDGFT 870 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC-Cccccc----hHHHhhhcCCCc
Confidence 65 5554322111 122 34444455556667777776542111 112222 344666666654
No 495
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.99 E-value=0.083 Score=49.29 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=30.9
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..++|.+..+..|.-.... ..-+.++|.+|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG---------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG---------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC---------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC---------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4678888888777766642 35788999999999999998854
No 496
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.98 E-value=0.34 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....++|+|..|+|||||++.+..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998865
No 497
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.98 E-value=0.031 Score=50.61 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 036323 211 ISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~ 231 (583)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998874
No 498
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.44 Score=51.71 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=38.9
Q ss_pred ccCCceeechhHHH---HHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccc
Q 036323 177 IDVSEVRGRDEEMR---SIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV 234 (583)
Q Consensus 177 ~~~~~~vGR~~e~~---~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 234 (583)
+...++-|.++.++ ++++.|.++..- -+..-++-|.++|++|.|||.||+.+.....+
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 34456788776554 555555543210 01245677899999999999999999986444
No 499
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.96 E-value=0.066 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|..|+|||||.+.++..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 348999999999999999999873
No 500
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.95 E-value=0.038 Score=49.35 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHHcC
Q 036323 211 ISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~ 231 (583)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999999863
Done!